AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45518

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45518.t1 MTR_2g097390 93.808 646 37 1 1 646 1 643 0.0 1218
MS.gene45518.t1 MTR_2g097310 83.821 649 93 4 1 646 1 640 0.0 1091
MS.gene45518.t1 MTR_2g097350 82.435 649 104 3 1 646 1 642 0.0 1045
MS.gene45518.t1 MTR_2g097380 81.174 494 49 3 153 646 114 563 0.0 823
MS.gene45518.t1 MTR_4g064120 42.130 629 308 15 46 646 28 628 3.42e-155 461
MS.gene45518.t1 MTR_2g097410 51.454 447 199 9 213 646 302 743 2.11e-152 458
MS.gene45518.t1 MTR_4g064180 41.456 632 308 15 46 646 28 628 8.02e-151 450
MS.gene45518.t1 MTR_7g062120 52.320 388 179 3 263 646 357 742 8.64e-149 449
MS.gene45518.t1 MTR_4g064150 48.519 439 210 7 222 646 299 735 5.30e-146 441
MS.gene45518.t1 MTR_2g097467 38.658 626 335 13 50 646 51 656 2.13e-140 424
MS.gene45518.t1 MTR_4g064200 46.285 471 226 7 196 646 189 652 7.92e-140 422
MS.gene45518.t1 MTR_2g097473 39.165 623 336 15 50 646 51 656 1.45e-138 419
MS.gene45518.t1 MTR_2g097463 46.651 433 218 5 222 646 230 657 4.90e-137 416
MS.gene45518.t1 MTR_5g097480 30.933 375 250 4 274 643 173 543 2.95e-62 216
MS.gene45518.t1 MTR_3g056110 29.026 534 330 16 133 643 34 541 7.28e-60 209
MS.gene45518.t1 MTR_4g133660 30.079 379 253 5 273 644 170 543 8.65e-59 207
MS.gene45518.t1 MTR_2g082090 31.565 377 245 4 274 643 208 578 7.66e-58 205
MS.gene45518.t1 MTR_2g026250 29.765 383 258 5 269 643 216 595 1.14e-57 205
MS.gene45518.t1 MTR_3g089055 29.570 372 255 3 276 643 201 569 1.22e-54 196
MS.gene45518.t1 MTR_3g089055 29.570 372 255 3 276 643 196 564 1.65e-54 196
MS.gene45518.t1 MTR_5g094450 30.263 380 250 8 274 643 157 531 8.88e-54 193
MS.gene45518.t1 MTR_1g029420 29.839 372 254 3 276 643 223 591 1.80e-53 193
MS.gene45518.t1 MTR_7g027190 31.218 394 232 8 273 643 295 672 2.12e-53 194
MS.gene45518.t1 MTR_4g104020 27.749 382 255 8 275 643 146 519 1.21e-44 167
MS.gene45518.t1 MTR_4g102790 26.684 386 259 9 274 645 288 663 1.30e-44 169
MS.gene45518.t1 MTR_7g074650 30.959 365 238 8 282 645 442 793 3.10e-44 169
MS.gene45518.t1 MTR_8g442410 27.481 393 251 9 273 646 150 527 6.41e-44 165
MS.gene45518.t1 MTR_3g065980 30.612 392 242 8 268 643 162 539 1.12e-43 165
MS.gene45518.t1 MTR_5g009080 25.339 442 264 9 263 643 41 477 1.23e-39 152
MS.gene45518.t1 MTR_4g076140 24.943 437 263 9 267 643 37 468 1.73e-37 145
MS.gene45518.t1 MTR_3g022830 24.337 415 259 7 279 643 26 435 2.06e-37 145
MS.gene45518.t1 MTR_4g097080 24.485 388 257 10 278 645 133 504 1.09e-33 135
MS.gene45518.t1 MTR_2g089100 26.942 412 246 10 275 646 49 445 2.71e-32 130
MS.gene45518.t1 MTR_4g077760 27.632 380 248 10 275 643 191 554 5.78e-32 131
MS.gene45518.t1 MTR_2g034260 24.359 390 271 8 270 643 202 583 2.24e-31 129
MS.gene45518.t1 MTR_2g034250 24.485 388 274 6 270 643 202 584 3.38e-31 129
MS.gene45518.t1 MTR_1g096030 27.411 394 243 13 278 643 80 458 4.67e-31 127
MS.gene45518.t1 MTR_5g015490 24.869 382 269 10 278 645 114 491 1.08e-30 126
MS.gene45518.t1 MTR_1g069725 27.632 380 253 11 270 644 101 463 5.81e-30 124
MS.gene45518.t1 MTR_7g109580 25.526 380 264 9 273 643 184 553 1.31e-29 124
MS.gene45518.t1 MTR_2g034280 23.834 386 276 7 270 643 195 574 9.68e-29 121
MS.gene45518.t1 MTR_4g076020 27.005 374 234 12 282 646 88 431 1.59e-28 119
MS.gene45518.t1 MTR_7g057230 26.804 291 194 6 363 643 375 656 3.49e-28 120
MS.gene45518.t1 MTR_6g047750 25.397 378 257 10 279 643 296 661 6.99e-26 113
MS.gene45518.t1 MTR_5g058860 26.531 392 250 16 278 644 119 497 8.70e-24 105
MS.gene45518.t1 MTR_1g086970 24.379 443 280 17 231 643 60 477 5.61e-23 103
MS.gene45518.t1 MTR_2g099110 28.428 299 199 6 278 569 74 364 7.87e-22 99.4
MS.gene45518.t1 MTR_4g095500 22.551 439 279 10 260 646 41 470 9.82e-22 99.4
MS.gene45518.t1 MTR_3g072710 24.752 404 254 14 273 644 115 500 1.21e-21 99.4
MS.gene45518.t1 MTR_5g015950 21.362 426 272 9 275 646 32 448 2.42e-20 94.7
MS.gene45518.t1 MTR_3g053270 21.362 426 272 9 275 646 32 448 2.42e-20 94.7
MS.gene45518.t1 MTR_8g093070 23.559 399 270 14 261 646 122 498 2.60e-18 89.0
MS.gene45518.t1 MTR_0092s0100 24.868 378 248 11 279 643 376 730 3.22e-18 89.4
MS.gene45518.t1 MTR_0092s0100 24.868 378 248 11 279 643 373 727 3.24e-18 89.4
MS.gene45518.t1 MTR_4g026485 24.533 375 252 12 279 643 270 623 1.15e-17 87.4
MS.gene45518.t1 MTR_2g097370 90.625 32 3 0 62 93 1 32 6.94e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45518.t1 AT2G29060 42.165 619 316 11 50 645 57 656 3.59e-166 491
MS.gene45518.t1 AT2G29060 41.058 643 326 13 50 645 57 693 2.78e-163 484
MS.gene45518.t1 AT1G07530 51.410 461 204 7 203 646 310 767 3.60e-162 484
MS.gene45518.t1 AT1G07520 48.098 447 216 8 211 646 90 531 8.28e-142 424
MS.gene45518.t1 AT1G07520 48.098 447 216 8 211 646 90 531 8.28e-142 424
MS.gene45518.t1 AT2G29065 41.531 614 325 16 50 646 34 630 2.70e-141 426
MS.gene45518.t1 AT1G07520 48.098 447 216 8 211 646 254 695 2.47e-140 426
MS.gene45518.t1 AT1G07520 48.098 447 216 8 211 646 255 696 2.55e-140 426
MS.gene45518.t1 AT2G37650 48.177 384 191 4 266 645 323 702 7.68e-126 388
MS.gene45518.t1 AT2G37650 48.177 384 191 4 266 645 335 714 1.18e-125 388
MS.gene45518.t1 AT3G46600 43.155 431 234 5 220 646 126 549 3.53e-119 366
MS.gene45518.t1 AT3G46600 43.560 427 230 5 224 646 162 581 8.34e-119 366
MS.gene45518.t1 AT5G59450 40.570 456 260 6 201 646 146 600 5.85e-116 360
MS.gene45518.t1 AT3G46600 45.745 376 197 4 275 646 1 373 7.94e-114 346
MS.gene45518.t1 AT5G48150 33.333 375 242 5 274 643 118 489 4.32e-65 223
MS.gene45518.t1 AT5G48150 33.333 375 242 5 274 643 118 489 4.32e-65 223
MS.gene45518.t1 AT5G48150 33.333 375 242 5 274 643 118 489 4.32e-65 223
MS.gene45518.t1 AT5G48150 33.333 375 242 5 274 643 118 489 4.32e-65 223
MS.gene45518.t1 AT2G04890 31.818 374 241 4 274 643 49 412 1.08e-64 219
MS.gene45518.t1 AT1G50600 31.095 402 257 6 251 643 135 525 3.55e-60 210
MS.gene45518.t1 AT1G50600 31.095 402 257 6 251 643 206 596 1.02e-59 211
MS.gene45518.t1 AT1G50600 31.095 402 257 6 251 643 210 600 1.35e-59 210
MS.gene45518.t1 AT1G21450 27.788 529 351 13 128 643 82 592 3.89e-55 198
MS.gene45518.t1 AT4G17230 29.178 377 260 3 273 645 153 526 1.47e-49 181
MS.gene45518.t1 AT4G17230 29.178 377 260 3 273 645 153 526 1.47e-49 181
MS.gene45518.t1 AT3G54220 31.566 396 254 9 254 645 269 651 1.03e-46 175
MS.gene45518.t1 AT2G01570 30.311 386 240 11 268 643 214 580 5.95e-44 166
MS.gene45518.t1 AT1G66350 30.287 383 238 10 268 643 145 505 2.48e-43 163
MS.gene45518.t1 AT3G03450 27.720 386 255 8 268 643 173 544 1.44e-42 162
MS.gene45518.t1 AT1G14920 28.534 382 252 8 268 643 162 528 2.74e-42 160
MS.gene45518.t1 AT5G17490 26.190 378 261 7 270 643 152 515 6.65e-40 154
MS.gene45518.t1 AT1G50420 22.940 449 278 9 257 643 36 478 1.10e-35 141
MS.gene45518.t1 AT1G63100 28.729 362 233 10 266 618 244 589 5.59e-35 140
MS.gene45518.t1 AT1G63100 28.729 362 233 10 266 618 269 614 5.70e-35 141
MS.gene45518.t1 AT5G66770 29.067 375 238 12 282 643 224 583 1.65e-33 136
MS.gene45518.t1 AT5G41920 29.534 386 235 14 272 643 37 399 8.20e-32 128
MS.gene45518.t1 AT4G37650 25.278 360 235 9 277 611 145 495 7.95e-31 127
MS.gene45518.t1 AT3G50650 25.895 363 236 10 298 643 195 541 7.94e-28 118
MS.gene45518.t1 AT5G52510 24.548 387 260 9 276 643 266 639 8.07e-28 119
MS.gene45518.t1 AT3G49950 24.570 407 281 9 258 645 10 409 7.83e-25 107
MS.gene45518.t1 AT4G08250 24.936 393 265 13 270 644 97 477 2.24e-24 107
MS.gene45518.t1 AT1G55580 25.604 414 253 11 275 643 41 444 3.54e-24 106
MS.gene45518.t1 AT3G60630 28.571 210 125 8 349 544 327 525 1.50e-11 67.8

Find 113 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAAAATGGAGGAGTATT+TGG 0.132396 2.1:+6568111 None:intergenic
TCTTAATCTGGTTTAATATT+TGG 0.136631 2.1:+6567722 None:intergenic
TTCTATTTGGTTCTTCTTGC+TGG 0.149493 2.1:-6566700 MS.gene45518:CDS
TTCACTCTCTCCAATGAATT+TGG 0.151096 2.1:+6567346 None:intergenic
AGTCTTCACATTATAGATTT+TGG 0.160984 2.1:-6567463 MS.gene45518:CDS
ATGCTATGAATAAATATATT+TGG 0.170780 2.1:+6567097 None:intergenic
AATCTTCTTCCATGAGAAAT+TGG 0.197500 2.1:+6568433 None:intergenic
CAAAGATTGGCACATTTCTT+TGG 0.204755 2.1:-6567670 MS.gene45518:CDS
TTTCTCAATGTGTCACAAAA+TGG 0.237333 2.1:-6567988 MS.gene45518:CDS
GTGAAGACTTTCTGTTTCTT+TGG 0.238565 2.1:+6567477 None:intergenic
CAAACAGATTCTATGGTTCT+AGG 0.245218 2.1:-6567837 MS.gene45518:CDS
TTTATTCATAGCATTGTTAA+TGG 0.248656 2.1:-6567088 MS.gene45518:CDS
ACAAAGTTATTAGGAGAAAA+TGG 0.257230 2.1:+6568099 None:intergenic
GAATTCACTTCCACTGTTCT+TGG 0.261009 2.1:-6568561 MS.gene45518:CDS
GATTGGGAAACAAAGTTATT+AGG 0.262305 2.1:+6568090 None:intergenic
CATATATGCATTGGCATTCT+AGG 0.265664 2.1:-6566868 MS.gene45518:CDS
TTTGATAAAGTACTAGTTCT+TGG 0.268048 2.1:-6567919 MS.gene45518:CDS
TGAAATATCATTACAAGAAA+TGG 0.276552 2.1:+6567753 None:intergenic
ATTATTGAAAGAAGGGAAAA+AGG 0.276813 2.1:+6568059 None:intergenic
ATTCACTCTTACTTTGTTCA+TGG 0.287286 2.1:+6568580 None:intergenic
AAACTATAATCACTGAAGTT+AGG 0.291953 2.1:+6568213 None:intergenic
GAATCCGAGAGGTGCTGTTT+TGG 0.303272 2.1:-6567140 MS.gene45518:CDS
GAGAAAATGGAGGAGTATTT+GGG 0.303863 2.1:+6568112 None:intergenic
TGTTTGAGGTGAAGGAAAAT+TGG 0.305166 2.1:-6566748 MS.gene45518:CDS
TGGAAGGGTAGAATTCTATT+TGG 0.313548 2.1:-6566713 MS.gene45518:CDS
GAGAAGAATGTGTCTTAATC+TGG 0.320149 2.1:+6567710 None:intergenic
CATTCTAGGCACATGGGAAA+TGG 0.323083 2.1:-6566854 MS.gene45518:CDS
GAATTATCAAACAGATTCTA+TGG 0.344805 2.1:-6567844 MS.gene45518:CDS
GATAGATCTTCCAAATTCAT+TGG 0.350686 2.1:-6567356 MS.gene45518:CDS
TTGGGAAAGTATCAAAGTTC+AGG 0.363131 2.1:-6567248 MS.gene45518:CDS
TGGGTTTAGATCTTTGAAAC+TGG 0.374406 2.1:-6566834 MS.gene45518:CDS
TCTATTTGGTTCTTCTTGCT+GGG 0.374895 2.1:-6566699 MS.gene45518:CDS
TCCTCAAACATCAACCTAAC+AGG 0.379387 2.1:+6566962 None:intergenic
GGAGTATTTGGGAGTAGAAA+AGG 0.380526 2.1:+6568123 None:intergenic
TTGATAATTCTTCATTCTGC+TGG 0.383176 2.1:+6567857 None:intergenic
ACCTGATGAGACAGTTGTTT+CGG 0.393796 2.1:-6567164 MS.gene45518:CDS
TAGCCTGTGAAGGCTGTGAT+AGG 0.399278 2.1:-6566907 MS.gene45518:CDS
GCAATACCATTGTACTCAAA+AGG 0.401991 2.1:+6567277 None:intergenic
CTTGGTACTAAATTCACAAA+AGG 0.404219 2.1:-6567901 MS.gene45518:CDS
GTTGAAGAGCATAGGAATCT+TGG 0.409119 2.1:+6568388 None:intergenic
GATGTTTGAGGAAGACGTTT+GGG 0.411150 2.1:-6566951 MS.gene45518:CDS
GAGTGAATGAAACAGGTCTT+AGG 0.420195 2.1:-6567330 MS.gene45518:CDS
GTAGGAGGAAGAGGAGGAAG+AGG 0.424502 2.1:+6568327 None:intergenic
GAAAGAGCATTATTGAAAGA+AGG 0.427388 2.1:+6568051 None:intergenic
GAGTATTTGGGAGTAGAAAA+GGG 0.432472 2.1:+6568124 None:intergenic
TTGGAGAGAGTGAATGAAAC+AGG 0.438708 2.1:-6567337 MS.gene45518:CDS
ACTCTTCATGTTCATTGTGT+TGG 0.439658 2.1:+6568481 None:intergenic
ATGAGGAAGTTGTGGATTTG+AGG 0.441434 2.1:-6567801 MS.gene45518:CDS
AACTATAATCACTGAAGTTA+GGG 0.442010 2.1:+6568214 None:intergenic
AAAGAGCATTATTGAAAGAA+GGG 0.443472 2.1:+6568052 None:intergenic
CTCTTACTTTGTTCATGGAG+TGG 0.447982 2.1:+6568585 None:intergenic
TGATGTTTGAGGAAGACGTT+TGG 0.448987 2.1:-6566952 MS.gene45518:CDS
AAGACACATTCTTCTCCAAC+AGG 0.450645 2.1:-6567703 MS.gene45518:CDS
GAAGCACGTTTAGCAGGAAC+TGG 0.455780 2.1:-6567637 MS.gene45518:CDS
ATTCTAGGCACATGGGAAAT+GGG 0.456200 2.1:-6566853 MS.gene45518:CDS
GGTTATGGTTTCAAGTGGCT+TGG 0.456727 2.1:-6567436 MS.gene45518:CDS
CTTTGAGTTCCATCACCTGT+TGG 0.456885 2.1:+6567688 None:intergenic
TATCCCTGTGATCCTCAACT+TGG 0.460979 2.1:+6567375 None:intergenic
GCAGATTATAAATAAATTGA+AGG 0.461295 2.1:-6566807 MS.gene45518:CDS
TCCTGTTAGGTTGATGTTTG+AGG 0.467599 2.1:-6566963 MS.gene45518:CDS
GCAGCAGCAGTAGGAGGAAG+AGG 0.470349 2.1:+6568318 None:intergenic
GAAGAGTCTTCCAATGCTCT+TGG 0.479029 2.1:-6568465 MS.gene45518:CDS
TCCGAAACAACTGTCTCATC+AGG 0.480396 2.1:+6567163 None:intergenic
TGCCAATGCATATATGTCTC+TGG 0.481671 2.1:+6566875 None:intergenic
CCACCCAAGTTGAGGATCAC+AGG 0.486139 2.1:-6567379 MS.gene45518:CDS
TATCGTTTATCGAAAAGATC+TGG 0.498438 2.1:-6567406 MS.gene45518:CDS
GCACTTGAAGCACGTTTAGC+AGG 0.499951 2.1:-6567643 MS.gene45518:CDS
TTGAATGTGAGGATCCTGTT+AGG 0.507367 2.1:-6566976 MS.gene45518:CDS
AAAATTGGATGCTACAAGGT+TGG 0.509330 2.1:-6566733 MS.gene45518:CDS
TTGGTACTAAATTCACAAAA+GGG 0.510419 2.1:-6567900 MS.gene45518:CDS
AACCCTATCACAGCCTTCAC+AGG 0.513850 2.1:+6566904 None:intergenic
GTTGATATAACCAAGAGCAT+TGG 0.514520 2.1:+6568455 None:intergenic
CATTCTTCTCCAACAGGTGA+TGG 0.515669 2.1:-6567697 MS.gene45518:CDS
TTATATCAACCAATTTCTCA+TGG 0.530130 2.1:-6568442 MS.gene45518:CDS
AAGAAGTTATGAGGAAGTTG+TGG 0.533441 2.1:-6567809 MS.gene45518:CDS
CTAGTTGTGAAGGTCTATGC+TGG 0.539897 2.1:+6566674 None:intergenic
GGCCAGAGACATATATGCAT+TGG 0.541953 2.1:-6566877 MS.gene45518:CDS
TACTCATGCTGGATGGAAGA+AGG 0.547361 2.1:+6568264 None:intergenic
GGCATGCTGATGAATAAACT+TGG 0.547453 2.1:+6567551 None:intergenic
TTGGATGCTACAAGGTTGGA+AGG 0.548278 2.1:-6566729 MS.gene45518:CDS
TAGGAGACAAAGAAGTTATG+AGG 0.549337 2.1:-6567818 MS.gene45518:CDS
CAGATTATAAATAAATTGAA+GGG 0.550775 2.1:-6566806 MS.gene45518:CDS
ATTCATAGCATTGTTAATGG+TGG 0.554304 2.1:-6567085 MS.gene45518:CDS
ATCCCTGTGATCCTCAACTT+GGG 0.558025 2.1:+6567376 None:intergenic
AGGTGATGGAACTCAAAGAT+TGG 0.559955 2.1:-6567683 MS.gene45518:CDS
AGCCTGTGAAGGCTGTGATA+GGG 0.569110 2.1:-6566906 MS.gene45518:CDS
ATGTTTGAGGAAGACGTTTG+GGG 0.578234 2.1:-6566950 MS.gene45518:CDS
AAATCCAAAACAGCACCTCT+CGG 0.585044 2.1:+6567136 None:intergenic
AATTTGTTATAGATGGACAA+AGG 0.588146 2.1:-6568618 None:intergenic
GCATTGGCATTCTAGGCACA+TGG 0.590416 2.1:-6566861 MS.gene45518:CDS
TATATGTGGATCAAGTTCAA+AGG 0.594302 2.1:+6568170 None:intergenic
CTCAGTAAGTTGAAGAGCAT+AGG 0.600415 2.1:+6568380 None:intergenic
CACCCAAGTTGAGGATCACA+GGG 0.601694 2.1:-6567378 MS.gene45518:CDS
CGTTTATCGAAAAGATCTGG+TGG 0.602238 2.1:-6567403 MS.gene45518:CDS
AAGGAAAATTGGATGCTACA+AGG 0.606455 2.1:-6566737 MS.gene45518:CDS
CCTGTGATCCTCAACTTGGG+TGG 0.609546 2.1:+6567379 None:intergenic
GTGTTGGTTATGGTTTCAAG+TGG 0.612035 2.1:-6567441 MS.gene45518:CDS
TGTTTGAGGAAGACGTTTGG+GGG 0.623857 2.1:-6566949 MS.gene45518:CDS
TAGTTGTATGAGTCTATATG+TGG 0.625308 2.1:+6568156 None:intergenic
GCAGCAGTAGGAGGAAGAGG+AGG 0.633732 2.1:+6568321 None:intergenic
TGGATGCTACAAGGTTGGAA+GGG 0.641743 2.1:-6566728 MS.gene45518:CDS
CATTGGCATTCTAGGCACAT+GGG 0.643663 2.1:-6566860 MS.gene45518:CDS
GTAAGCTTTGACCATATCTG+CGG 0.645774 2.1:+6567573 None:intergenic
GTTTATAAAACCAAGAACAG+TGG 0.646066 2.1:+6568551 None:intergenic
AAGGCTGTGATAGGGTTCAG+AGG 0.656517 2.1:-6566898 MS.gene45518:CDS
CTGGTGGGCCACCCAAGTTG+AGG 0.658509 2.1:-6567387 MS.gene45518:CDS
ATGTGGATCAAGTTCAAAGG+AGG 0.665342 2.1:+6568173 None:intergenic
ATGAATGTTATAGCCTGTGA+AGG 0.667099 2.1:-6566917 MS.gene45518:CDS
TTGTTGATACTCATGCTGGA+TGG 0.669072 2.1:+6568257 None:intergenic
TAACAACAATGTTGAATGTG+AGG 0.669855 2.1:-6566987 MS.gene45518:CDS
AAGTTATTAGGAGAAAATGG+AGG 0.670375 2.1:+6568102 None:intergenic
GTTTATCGAAAAGATCTGGT+GGG 0.689733 2.1:-6567402 MS.gene45518:CDS
GTTGTTTCGGAGAATCCGAG+AGG 0.745211 2.1:-6567151 MS.gene45518:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGCTATGAATAAATATATT+TGG + chr2.1:6568200-6568219 None:intergenic 15.0%
!! CAGATTATAAATAAATTGAA+GGG - chr2.1:6568488-6568507 MS.gene45518:CDS 15.0%
!!! TTTTATAAACAAATTTCTCA+TGG - chr2.1:6566756-6566775 MS.gene45518:CDS 15.0%
!! GCAGATTATAAATAAATTGA+AGG - chr2.1:6568487-6568506 MS.gene45518:CDS 20.0%
!! TGAAATATCATTACAAGAAA+TGG + chr2.1:6567544-6567563 None:intergenic 20.0%
!! TTTATTCATAGCATTGTTAA+TGG - chr2.1:6568206-6568225 MS.gene45518:CDS 20.0%
!!! ATAATTGCAAGTTTTTCAAA+AGG + chr2.1:6567768-6567787 None:intergenic 20.0%
!!! TAATTGCAAGTTTTTCAAAA+GGG + chr2.1:6567767-6567786 None:intergenic 20.0%
!!! TCTTAATCTGGTTTAATATT+TGG + chr2.1:6567575-6567594 None:intergenic 20.0%
! AAACTATAATCACTGAAGTT+AGG + chr2.1:6567084-6567103 None:intergenic 25.0%
! AACTATAATCACTGAAGTTA+GGG + chr2.1:6567083-6567102 None:intergenic 25.0%
! ACAAAGTTATTAGGAGAAAA+TGG + chr2.1:6567198-6567217 None:intergenic 25.0%
! ACAATGGTATTGCAAAAAAT+TGG - chr2.1:6568027-6568046 MS.gene45518:CDS 25.0%
! ATTATTGAAAGAAGGGAAAA+AGG + chr2.1:6567238-6567257 None:intergenic 25.0%
! CAATGGTATTGCAAAAAATT+GGG - chr2.1:6568028-6568047 MS.gene45518:CDS 25.0%
! GAATTATCAAACAGATTCTA+TGG - chr2.1:6567450-6567469 MS.gene45518:CDS 25.0%
! TTAAACCTTGTCACAAAAAA+AGG + chr2.1:6568245-6568264 None:intergenic 25.0%
! TTATATCAACCAATTTCTCA+TGG - chr2.1:6566852-6566871 MS.gene45518:CDS 25.0%
! TTGGTACTAAATTCACAAAA+GGG - chr2.1:6567394-6567413 MS.gene45518:CDS 25.0%
!! AGTCTTCACATTATAGATTT+TGG - chr2.1:6567831-6567850 MS.gene45518:CDS 25.0%
!! TAATAGTGATTTTCTGTTTG+AGG - chr2.1:6568532-6568551 MS.gene45518:CDS 25.0%
!! TTTGATAAAGTACTAGTTCT+TGG - chr2.1:6567375-6567394 MS.gene45518:CDS 25.0%
!!! AAAGAGCATTATTGAAAGAA+GGG + chr2.1:6567245-6567264 None:intergenic 25.0%
!!! AAGTTCAGGATTTTAAGATA+AGG - chr2.1:6568060-6568079 MS.gene45518:CDS 25.0%
!!! TGTTTTGGATTTGATTAAGA+AGG - chr2.1:6568169-6568188 MS.gene45518:CDS 25.0%
!!! TTTTTTTGTGACAAGGTTTA+AGG - chr2.1:6568244-6568263 MS.gene45518:CDS 25.0%
AAGTTATTAGGAGAAAATGG+AGG + chr2.1:6567195-6567214 None:intergenic 30.0%
AATCTTCTTCCATGAGAAAT+TGG + chr2.1:6566864-6566883 None:intergenic 30.0%
ATTCACTCTTACTTTGTTCA+TGG + chr2.1:6566717-6566736 None:intergenic 30.0%
ATTCATAGCATTGTTAATGG+TGG - chr2.1:6568209-6568228 MS.gene45518:CDS 30.0%
CTTGGTACTAAATTCACAAA+AGG - chr2.1:6567393-6567412 MS.gene45518:CDS 30.0%
GAAAAAGGTTGAAGTAGATT+GGG + chr2.1:6567223-6567242 None:intergenic 30.0%
GATAGATCTTCCAAATTCAT+TGG - chr2.1:6567938-6567957 MS.gene45518:CDS 30.0%
GATTGGGAAACAAAGTTATT+AGG + chr2.1:6567207-6567226 None:intergenic 30.0%
GTTTATAAAACCAAGAACAG+TGG + chr2.1:6566746-6566765 None:intergenic 30.0%
TAACAACAATGTTGAATGTG+AGG - chr2.1:6568307-6568326 MS.gene45518:CDS 30.0%
TAGTTGTATGAGTCTATATG+TGG + chr2.1:6567141-6567160 None:intergenic 30.0%
TATATGTGGATCAAGTTCAA+AGG + chr2.1:6567127-6567146 None:intergenic 30.0%
TATCGTTTATCGAAAAGATC+TGG - chr2.1:6567888-6567907 MS.gene45518:CDS 30.0%
TTTCTCAATGTGTCACAAAA+TGG - chr2.1:6567306-6567325 MS.gene45518:CDS 30.0%
! TTGATAATTCTTCATTCTGC+TGG + chr2.1:6567440-6567459 None:intergenic 30.0%
!! AATGTTCCTTTTGAGTACAA+TGG - chr2.1:6568011-6568030 MS.gene45518:CDS 30.0%
!! CACATTATAGATTTTGGTGT+TGG - chr2.1:6567837-6567856 MS.gene45518:CDS 30.0%
!! GAAAGAGCATTATTGAAAGA+AGG + chr2.1:6567246-6567265 None:intergenic 30.0%
!!! ATAGATTTTGGTGTTGGTTA+TGG - chr2.1:6567843-6567862 MS.gene45518:CDS 30.0%
AAAATTGGATGCTACAAGGT+TGG - chr2.1:6568561-6568580 MS.gene45518:CDS 35.0%
AAGAAGTTATGAGGAAGTTG+TGG - chr2.1:6567485-6567504 MS.gene45518:CDS 35.0%
AAGGAAAATTGGATGCTACA+AGG - chr2.1:6568557-6568576 MS.gene45518:CDS 35.0%
ACTCTTCATGTTCATTGTGT+TGG + chr2.1:6566816-6566835 None:intergenic 35.0%
ATGAATGTTATAGCCTGTGA+AGG - chr2.1:6568377-6568396 MS.gene45518:CDS 35.0%
CAAACAGATTCTATGGTTCT+AGG - chr2.1:6567457-6567476 MS.gene45518:CDS 35.0%
CAAAGATTGGCACATTTCTT+TGG - chr2.1:6567624-6567643 MS.gene45518:CDS 35.0%
GAGAAGAATGTGTCTTAATC+TGG + chr2.1:6567587-6567606 None:intergenic 35.0%
GAGTATTTGGGAGTAGAAAA+GGG + chr2.1:6567173-6567192 None:intergenic 35.0%
GCAATACCATTGTACTCAAA+AGG + chr2.1:6568020-6568039 None:intergenic 35.0%
GGAAAAAGGTTGAAGTAGAT+TGG + chr2.1:6567224-6567243 None:intergenic 35.0%
GTTTATCGAAAAGATCTGGT+GGG - chr2.1:6567892-6567911 MS.gene45518:CDS 35.0%
TAGGAGACAAAGAAGTTATG+AGG - chr2.1:6567476-6567495 MS.gene45518:CDS 35.0%
TGGAAGGGTAGAATTCTATT+TGG - chr2.1:6568581-6568600 MS.gene45518:CDS 35.0%
TTCACTCTCTCCAATGAATT+TGG + chr2.1:6567951-6567970 None:intergenic 35.0%
! CATATATGCATTGGCATTCT+AGG - chr2.1:6568426-6568445 MS.gene45518:CDS 35.0%
! GTGAAGACTTTCTGTTTCTT+TGG + chr2.1:6567820-6567839 None:intergenic 35.0%
! GTTGATATAACCAAGAGCAT+TGG + chr2.1:6566842-6566861 None:intergenic 35.0%
! TGTTTGAGGTGAAGGAAAAT+TGG - chr2.1:6568546-6568565 MS.gene45518:CDS 35.0%
!! GAGAAAATGGAGGAGTATTT+GGG + chr2.1:6567185-6567204 None:intergenic 35.0%
!! TCTATTTGGTTCTTCTTGCT+GGG - chr2.1:6568595-6568614 MS.gene45518:CDS 35.0%
!! TGATTTTCTGTTTGAGGTGA+AGG - chr2.1:6568538-6568557 MS.gene45518:CDS 35.0%
!! TGGGTTTAGATCTTTGAAAC+TGG - chr2.1:6568460-6568479 MS.gene45518:CDS 35.0%
!! TTCTATTTGGTTCTTCTTGC+TGG - chr2.1:6568594-6568613 MS.gene45518:CDS 35.0%
!! TTGGGAAAGTATCAAAGTTC+AGG - chr2.1:6568046-6568065 MS.gene45518:CDS 35.0%
!!! AGTTTTGTTGATACTCATGC+TGG + chr2.1:6567044-6567063 None:intergenic 35.0%
!!! ATGCACCTTTTTTTGTGACA+AGG - chr2.1:6568237-6568256 MS.gene45518:CDS 35.0%
AAATCCAAAACAGCACCTCT+CGG + chr2.1:6568161-6568180 None:intergenic 40.0%
AAGACACATTCTTCTCCAAC+AGG - chr2.1:6567591-6567610 MS.gene45518:CDS 40.0%
ACCTGATGAGACAGTTGTTT+CGG - chr2.1:6568130-6568149 MS.gene45518:CDS 40.0%
ATGAGGAAGTTGTGGATTTG+AGG - chr2.1:6567493-6567512 MS.gene45518:CDS 40.0%
ATGTGGATCAAGTTCAAAGG+AGG + chr2.1:6567124-6567143 None:intergenic 40.0%
ATGTTTGAGGAAGACGTTTG+GGG - chr2.1:6568344-6568363 MS.gene45518:CDS 40.0%
ATTCTAGGCACATGGGAAAT+GGG - chr2.1:6568441-6568460 MS.gene45518:CDS 40.0%
CGTTTATCGAAAAGATCTGG+TGG - chr2.1:6567891-6567910 MS.gene45518:CDS 40.0%
CTCTTACTTTGTTCATGGAG+TGG + chr2.1:6566712-6566731 None:intergenic 40.0%
GAAAAAATCTGCCGCAGATA+TGG - chr2.1:6567710-6567729 MS.gene45518:CDS 40.0%
GAATTCACTTCCACTGTTCT+TGG - chr2.1:6566733-6566752 MS.gene45518:CDS 40.0%
GAGTGAATGAAACAGGTCTT+AGG - chr2.1:6567964-6567983 MS.gene45518:CDS 40.0%
GATGTTTGAGGAAGACGTTT+GGG - chr2.1:6568343-6568362 MS.gene45518:CDS 40.0%
GGCATGCTGATGAATAAACT+TGG + chr2.1:6567746-6567765 None:intergenic 40.0%
TCCTCAAACATCAACCTAAC+AGG + chr2.1:6568335-6568354 None:intergenic 40.0%
TGATGTTTGAGGAAGACGTT+TGG - chr2.1:6568342-6568361 MS.gene45518:CDS 40.0%
TGCCAATGCATATATGTCTC+TGG + chr2.1:6568422-6568441 None:intergenic 40.0%
TTGAATGTGAGGATCCTGTT+AGG - chr2.1:6568318-6568337 MS.gene45518:CDS 40.0%
TTGGAGAGAGTGAATGAAAC+AGG - chr2.1:6567957-6567976 MS.gene45518:CDS 40.0%
TTGTTGATACTCATGCTGGA+TGG + chr2.1:6567040-6567059 None:intergenic 40.0%
! CTCAGTAAGTTGAAGAGCAT+AGG + chr2.1:6566917-6566936 None:intergenic 40.0%
! GGAGTATTTGGGAGTAGAAA+AGG + chr2.1:6567174-6567193 None:intergenic 40.0%
! GTAAGCTTTGACCATATCTG+CGG + chr2.1:6567724-6567743 None:intergenic 40.0%
! GTTGAAGAGCATAGGAATCT+TGG + chr2.1:6566909-6566928 None:intergenic 40.0%
!! AGGTGATGGAACTCAAAGAT+TGG - chr2.1:6567611-6567630 MS.gene45518:CDS 40.0%
!! GGAGAAAATGGAGGAGTATT+TGG + chr2.1:6567186-6567205 None:intergenic 40.0%
!! GTGTTGGTTATGGTTTCAAG+TGG - chr2.1:6567853-6567872 MS.gene45518:CDS 40.0%
!! TCCTGTTAGGTTGATGTTTG+AGG - chr2.1:6568331-6568350 MS.gene45518:CDS 40.0%
!!! ATCTGCGGCAGATTTTTTCT+TGG + chr2.1:6567709-6567728 None:intergenic 40.0%
!!! TGGAAGCTTGTGTTTTGAAG+TGG + chr2.1:6567420-6567439 None:intergenic 40.0%
ATCCCTGTGATCCTCAACTT+GGG + chr2.1:6567921-6567940 None:intergenic 45.0%
CATTCTAGGCACATGGGAAA+TGG - chr2.1:6568440-6568459 MS.gene45518:CDS 45.0%
CATTCTTCTCCAACAGGTGA+TGG - chr2.1:6567597-6567616 MS.gene45518:CDS 45.0%
CATTGGCATTCTAGGCACAT+GGG - chr2.1:6568434-6568453 MS.gene45518:CDS 45.0%
GAAGAGTCTTCCAATGCTCT+TGG - chr2.1:6566829-6566848 MS.gene45518:CDS 45.0%
GGCCAGAGACATATATGCAT+TGG - chr2.1:6568417-6568436 MS.gene45518:CDS 45.0%
TACTCATGCTGGATGGAAGA+AGG + chr2.1:6567033-6567052 None:intergenic 45.0%
TATCCCTGTGATCCTCAACT+TGG + chr2.1:6567922-6567941 None:intergenic 45.0%
TCCGAAACAACTGTCTCATC+AGG + chr2.1:6568134-6568153 None:intergenic 45.0%
TGGATGCTACAAGGTTGGAA+GGG - chr2.1:6568566-6568585 MS.gene45518:CDS 45.0%
TGTTTGAGGAAGACGTTTGG+GGG - chr2.1:6568345-6568364 MS.gene45518:CDS 45.0%
TTGGATGCTACAAGGTTGGA+AGG - chr2.1:6568565-6568584 MS.gene45518:CDS 45.0%
! CTTTGAGTTCCATCACCTGT+TGG + chr2.1:6567609-6567628 None:intergenic 45.0%
! GGTTATGGTTTCAAGTGGCT+TGG - chr2.1:6567858-6567877 MS.gene45518:CDS 45.0%
AACCCTATCACAGCCTTCAC+AGG + chr2.1:6568393-6568412 None:intergenic 50.0%
AAGGCTGTGATAGGGTTCAG+AGG - chr2.1:6568396-6568415 MS.gene45518:CDS 50.0%
AGCCTGTGAAGGCTGTGATA+GGG - chr2.1:6568388-6568407 MS.gene45518:CDS 50.0%
GAAGCACGTTTAGCAGGAAC+TGG - chr2.1:6567657-6567676 MS.gene45518:CDS 50.0%
GCACTTGAAGCACGTTTAGC+AGG - chr2.1:6567651-6567670 MS.gene45518:CDS 50.0%
TAGCCTGTGAAGGCTGTGAT+AGG - chr2.1:6568387-6568406 MS.gene45518:CDS 50.0%
! CACCCAAGTTGAGGATCACA+GGG - chr2.1:6567916-6567935 MS.gene45518:CDS 50.0%
! GCATTGGCATTCTAGGCACA+TGG - chr2.1:6568433-6568452 MS.gene45518:CDS 50.0%
! GTTGTTTCGGAGAATCCGAG+AGG - chr2.1:6568143-6568162 MS.gene45518:CDS 50.0%
!!! GAATCCGAGAGGTGCTGTTT+TGG - chr2.1:6568154-6568173 MS.gene45518:CDS 50.0%
CCTGTGATCCTCAACTTGGG+TGG + chr2.1:6567918-6567937 None:intergenic 55.0%
GTAGGAGGAAGAGGAGGAAG+AGG + chr2.1:6566970-6566989 None:intergenic 55.0%
! CCACCCAAGTTGAGGATCAC+AGG - chr2.1:6567915-6567934 MS.gene45518:CDS 55.0%
ACAGCAGCAGCAGCAGCAGT+AGG + chr2.1:6566988-6567007 None:intergenic 60.0%
GCAGCAGCAGTAGGAGGAAG+AGG + chr2.1:6566979-6566998 None:intergenic 60.0%
GCAGCAGTAGGAGGAAGAGG+AGG + chr2.1:6566976-6566995 None:intergenic 60.0%
GCAGCAGCAGCAGCAGTAGG+AGG + chr2.1:6566985-6567004 None:intergenic 65.0%
! CTGGTGGGCCACCCAAGTTG+AGG - chr2.1:6567907-6567926 MS.gene45518:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 6566688 6568628 6566688 ID=MS.gene45518
chr2.1 mRNA 6566688 6568628 6566688 ID=MS.gene45518.t1;Parent=MS.gene45518
chr2.1 exon 6566688 6568628 6566688 ID=MS.gene45518.t1.exon1;Parent=MS.gene45518.t1
chr2.1 CDS 6566688 6568628 6566688 ID=cds.MS.gene45518.t1;Parent=MS.gene45518.t1
Gene Sequence

>MS.gene45518

ATGGACAAAGGAGTTGTTGATCCACTCCATGAACAAAGTAAGAGTGAATTCACTTCCACTGTTCTTGGTTTTATAAACAAATTTCTCATGGAAGATGATGACATAGAAGAAGACTACAATATGTTCCAACACAATGAACATGAAGAGTCTTCCAATGCTCTTGGTTATATCAACCAATTTCTCATGGAAGAAGATTTTGAAAAAGAATACACTATGTTCCAAGATTCCTATGCTCTTCAACTTACTGAGAAATCATTTCATGATGTTATTGCTCACACTCCTCTTCCTCCTCTTCCTCCTACTGCTGCTGCTGCTGCTGTTACTGCTTTTACTACTACTCTTCCTTCTTCCATCCAGCATGAGTATCAACAAAACTACAACTTTGTGCATAGCCCTAACTTCAGTGATTATAGTTTAAGCAGTGATAGCACTACCTCCTTTGAACTTGATCCACATATAGACTCATACAACTACAATTATAACCCTTTTCTACTCCCAAATACTCCTCCATTTTCTCCTAATAACTTTGTTTCCCAATCTACTTCAACCTTTTTCCCTTCTTTCAATAATGCTCTTTCTCATGAGCTACTTCAGACAGAAAACTTTGAAGAAGAGCATTTTCTCAATGTGTCACAAAATGGATCAGAACAAGTGTATGTAGATGATAGCAATGAGTTATCAGAATTATTTGATAAAGTACTAGTTCTTGGTACTAAATTCACAAAAGGGCCACTTCAAAACACAAGCTTCCAGCAGAATGAAGAATTATCAAACAGATTCTATGGTTCTAGGAGACAAAGAAGTTATGAGGAAGTTGTGGATTTGAGGACACTATTGATGCTGTGTGCACAATCCATTTCTTGTAATGATATTTCAAATGCTAACCAAATATTAAACCAGATTAAGACACATTCTTCTCCAACAGGTGATGGAACTCAAAGATTGGCACATTTCTTTGGAAATGCACTTGAAGCACGTTTAGCAGGAACTGGTTCACATATCTATAGAGCTCTATCTTCCAAGAAAAAATCTGCCGCAGATATGGTCAAAGCTTACCAAGTTTATTCATCAGCATGCCCTTTTGAAAAACTTGCAATTATGTTCTCAAACGATGCAATTTTGAATGTAGCCAAAGAAACAGAAAGTCTTCACATTATAGATTTTGGTGTTGGTTATGGTTTCAAGTGGCTTGGTTTTATATATCGTTTATCGAAAAGATCTGGTGGGCCACCCAAGTTGAGGATCACAGGGATAGATCTTCCAAATTCATTGGAGAGAGTGAATGAAACAGGTCTTAGGCTTGCAAGTTATTGCAAACGTTTCAATGTTCCTTTTGAGTACAATGGTATTGCAAAAAATTGGGAAAGTATCAAAGTTCAGGATTTTAAGATAAGGAAAAATGAGTTTGTTGCTGTGACTTGTGTGTTTAAGTTTGAGAATCTACCTGATGAGACAGTTGTTTCGGAGAATCCGAGAGGTGCTGTTTTGGATTTGATTAAGAAGGCAAATCCAAATATATTTATTCATAGCATTGTTAATGGTGGTTATGATGCACCTTTTTTTGTGACAAGGTTTAAGGAAGCTGTTTTTTATTATTCAGCATTGTTTGATATGCTTGATAACAACAATGTTGAATGTGAGGATCCTGTTAGGTTGATGTTTGAGGAAGACGTTTGGGGGAAAGATATAATGAATGTTATAGCCTGTGAAGGCTGTGATAGGGTTCAGAGGCCAGAGACATATATGCATTGGCATTCTAGGCACATGGGAAATGGGTTTAGATCTTTGAAACTGGATAAGCAGATTATAAATAAATTGAAGGGTAAGTTAAGAGATGATGCATATAATAGTGATTTTCTGTTTGAGGTGAAGGAAAATTGGATGCTACAAGGTTGGAAGGGTAGAATTCTATTTGGTTCTTCTTGCTGGGTTCCAGCATAG
Protein sequence

>MS.gene45518.t1

MDKGVVDPLHEQSKSEFTSTVLGFINKFLMEDDDIEEDYNMFQHNEHEESSNALGYINQFLMEEDFEKEYTMFQDSYALQLTEKSFHDVIAHTPLPPLPPTAAAAAVTAFTTTLPSSIQHEYQQNYNFVHSPNFSDYSLSSDSTTSFELDPHIDSYNYNYNPFLLPNTPPFSPNNFVSQSTSTFFPSFNNALSHELLQTENFEEEHFLNVSQNGSEQVYVDDSNELSELFDKVLVLGTKFTKGPLQNTSFQQNEELSNRFYGSRRQRSYEEVVDLRTLLMLCAQSISCNDISNANQILNQIKTHSSPTGDGTQRLAHFFGNALEARLAGTGSHIYRALSSKKKSAADMVKAYQVYSSACPFEKLAIMFSNDAILNVAKETESLHIIDFGVGYGFKWLGFIYRLSKRSGGPPKLRITGIDLPNSLERVNETGLRLASYCKRFNVPFEYNGIAKNWESIKVQDFKIRKNEFVAVTCVFKFENLPDETVVSENPRGAVLDLIKKANPNIFIHSIVNGGYDAPFFVTRFKEAVFYYSALFDMLDNNNVECEDPVRLMFEEDVWGKDIMNVIACEGCDRVQRPETYMHWHSRHMGNGFRSLKLDKQIINKLKGKLRDDAYNSDFLFEVKENWMLQGWKGRILFGSSCWVPA