AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45520.t1 MTR_2g097410 96.770 743 24 0 1 743 1 743 0.0 1501
MS.gene45520.t1 MTR_4g064150 58.095 735 249 12 21 743 48 735 0.0 805
MS.gene45520.t1 MTR_4g064120 56.609 696 208 10 54 743 21 628 0.0 762
MS.gene45520.t1 MTR_4g064180 56.178 696 211 10 54 743 21 628 0.0 750
MS.gene45520.t1 MTR_4g064160 48.753 722 314 17 35 743 8 686 0.0 623
MS.gene45520.t1 MTR_7g062120 44.930 710 329 16 61 743 68 742 0.0 562
MS.gene45520.t1 MTR_4g064200 52.891 467 191 6 294 743 198 652 6.10e-167 496
MS.gene45520.t1 MTR_2g097467 51.535 456 201 4 295 743 214 656 1.80e-165 492
MS.gene45520.t1 MTR_2g097463 50.858 466 215 5 284 743 200 657 5.67e-164 488
MS.gene45520.t1 MTR_2g097473 50.641 468 210 5 284 743 202 656 3.63e-163 486
MS.gene45520.t1 MTR_2g097310 52.079 457 202 9 291 743 197 640 1.53e-159 476
MS.gene45520.t1 MTR_2g097350 51.902 447 197 9 302 743 209 642 5.07e-154 462
MS.gene45520.t1 MTR_2g097390 51.678 447 198 9 302 743 210 643 1.38e-153 461
MS.gene45520.t1 MTR_2g097380 48.624 436 167 10 310 743 183 563 4.57e-133 405
MS.gene45520.t1 MTR_2g082090 32.979 376 245 4 367 740 208 578 5.96e-67 232
MS.gene45520.t1 MTR_3g056110 32.021 381 242 8 367 740 171 541 1.24e-60 214
MS.gene45520.t1 MTR_4g133660 30.607 379 255 5 366 741 170 543 1.41e-60 213
MS.gene45520.t1 MTR_5g094450 33.505 388 231 10 367 740 157 531 4.43e-60 212
MS.gene45520.t1 MTR_5g097480 30.851 376 253 4 367 740 173 543 1.15e-59 211
MS.gene45520.t1 MTR_7g027190 31.472 394 235 6 366 740 295 672 2.88e-56 204
MS.gene45520.t1 MTR_1g029420 29.679 374 256 4 369 740 223 591 1.44e-54 198
MS.gene45520.t1 MTR_2g026250 28.059 474 312 9 272 740 146 595 1.98e-54 197
MS.gene45520.t1 MTR_3g089055 30.851 376 249 7 369 740 201 569 3.04e-54 196
MS.gene45520.t1 MTR_3g089055 30.851 376 249 7 369 740 196 564 3.28e-54 196
MS.gene45520.t1 MTR_7g074650 31.793 368 235 6 375 742 442 793 2.21e-52 195
MS.gene45520.t1 MTR_8g442410 31.920 401 251 8 351 740 135 524 7.05e-51 186
MS.gene45520.t1 MTR_3g065980 31.218 394 231 6 366 740 167 539 2.18e-50 185
MS.gene45520.t1 MTR_4g104020 29.803 406 248 10 354 740 132 519 3.98e-50 184
MS.gene45520.t1 MTR_3g022830 26.555 418 250 6 372 740 26 435 3.40e-44 165
MS.gene45520.t1 MTR_4g102790 29.199 387 252 10 367 742 288 663 2.99e-43 167
MS.gene45520.t1 MTR_4g076140 26.402 428 250 5 371 740 48 468 3.11e-43 163
MS.gene45520.t1 MTR_4g076020 27.851 377 231 7 375 743 88 431 2.55e-42 160
MS.gene45520.t1 MTR_1g069725 28.052 385 247 11 364 741 102 463 3.33e-41 157
MS.gene45520.t1 MTR_4g097080 29.474 380 256 7 369 742 131 504 1.70e-40 156
MS.gene45520.t1 MTR_2g089100 26.290 407 259 9 368 743 49 445 3.66e-38 148
MS.gene45520.t1 MTR_2g034260 27.778 396 256 11 362 740 201 583 4.82e-36 144
MS.gene45520.t1 MTR_2g034250 28.101 395 257 8 362 740 201 584 1.09e-35 143
MS.gene45520.t1 MTR_4g077760 26.509 381 255 10 368 740 191 554 1.80e-35 142
MS.gene45520.t1 MTR_5g015490 28.125 384 258 7 371 742 114 491 5.28e-34 137
MS.gene45520.t1 MTR_8g065750 83.824 68 11 0 27 94 38 105 2.31e-32 121
MS.gene45520.t1 MTR_5g058860 26.253 419 271 12 346 741 94 497 5.25e-32 131
MS.gene45520.t1 MTR_2g034280 25.765 392 267 7 362 740 194 574 2.87e-31 130
MS.gene45520.t1 MTR_1g096030 27.456 397 243 14 371 740 80 458 1.44e-30 126
MS.gene45520.t1 MTR_7g109580 28.093 388 248 11 366 740 184 553 2.47e-30 127
MS.gene45520.t1 MTR_3g072710 25.721 416 261 13 355 741 104 500 3.49e-30 125
MS.gene45520.t1 MTR_6g047750 26.963 382 250 12 372 740 296 661 1.88e-29 125
MS.gene45520.t1 MTR_7g057230 25.867 375 259 8 372 740 295 656 3.91e-29 124
MS.gene45520.t1 MTR_5g015950 21.934 424 276 8 368 743 32 448 7.15e-27 115
MS.gene45520.t1 MTR_3g053270 21.934 424 276 8 368 743 32 448 7.15e-27 115
MS.gene45520.t1 MTR_4g095500 22.803 421 274 9 368 743 56 470 1.10e-26 114
MS.gene45520.t1 MTR_1g086970 25.505 396 255 13 366 740 101 477 4.01e-26 113
MS.gene45520.t1 MTR_5g009080 29.048 210 142 2 371 580 56 258 5.77e-26 112
MS.gene45520.t1 MTR_5g009080 28.188 149 107 0 592 740 329 477 2.23e-17 86.3
MS.gene45520.t1 MTR_3g087300 89.286 56 6 0 335 390 153 208 2.02e-25 105
MS.gene45520.t1 MTR_2g099110 26.733 303 204 6 371 667 74 364 1.31e-23 105
MS.gene45520.t1 MTR_8g093070 24.121 398 263 16 359 743 127 498 1.73e-22 102
MS.gene45520.t1 MTR_8g020840 24.365 394 242 14 358 727 163 524 3.20e-17 86.3
MS.gene45520.t1 MTR_0092s0100 23.016 378 259 8 372 740 376 730 1.24e-16 84.7
MS.gene45520.t1 MTR_0092s0100 23.016 378 259 8 372 740 373 727 1.35e-16 84.7
MS.gene45520.t1 MTR_4g026485 24.458 323 215 8 376 691 274 574 2.55e-16 83.6
MS.gene45520.t1 MTR_8g077940 22.691 379 262 12 372 740 183 540 8.87e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45520.t1 AT1G07530 48.729 708 305 11 68 743 86 767 0.0 633
MS.gene45520.t1 AT2G29060 47.178 691 268 14 62 742 53 656 0.0 580
MS.gene45520.t1 AT2G29060 46.906 695 301 14 62 742 53 693 0.0 575
MS.gene45520.t1 AT2G29065 44.695 754 282 18 1 743 1 630 0.0 558
MS.gene45520.t1 AT1G07520 46.802 688 291 15 69 743 70 695 0.0 558
MS.gene45520.t1 AT1G07520 46.802 688 291 15 69 743 71 696 0.0 558
MS.gene45520.t1 AT1G07520 51.786 560 217 12 194 743 15 531 0.0 548
MS.gene45520.t1 AT1G07520 51.786 560 217 12 194 743 15 531 0.0 548
MS.gene45520.t1 AT2G37650 41.690 710 318 16 61 742 73 714 1.03e-168 503
MS.gene45520.t1 AT2G37650 41.690 710 318 16 61 742 61 702 1.37e-168 502
MS.gene45520.t1 AT3G46600 51.007 447 206 6 297 743 116 549 2.87e-158 470
MS.gene45520.t1 AT3G46600 51.007 447 206 6 297 743 148 581 3.32e-158 471
MS.gene45520.t1 AT5G59450 47.619 504 242 9 257 743 102 600 6.92e-158 471
MS.gene45520.t1 AT3G46600 55.053 376 166 2 368 743 1 373 1.42e-150 444
MS.gene45520.t1 AT1G50600 31.915 376 249 4 367 740 155 525 3.34e-60 212
MS.gene45520.t1 AT1G50600 31.915 376 249 4 367 740 230 600 1.56e-59 212
MS.gene45520.t1 AT1G50600 31.915 376 249 4 367 740 226 596 1.57e-59 212
MS.gene45520.t1 AT2G04890 31.016 374 248 4 367 740 49 412 2.01e-58 204
MS.gene45520.t1 AT5G48150 28.967 397 276 3 344 740 99 489 2.24e-58 206
MS.gene45520.t1 AT5G48150 28.967 397 276 3 344 740 99 489 2.24e-58 206
MS.gene45520.t1 AT5G48150 28.967 397 276 3 344 740 99 489 2.24e-58 206
MS.gene45520.t1 AT5G48150 28.967 397 276 3 344 740 99 489 2.24e-58 206
MS.gene45520.t1 AT1G21450 31.649 376 247 6 369 740 223 592 6.29e-58 207
MS.gene45520.t1 AT1G66350 33.245 379 226 9 366 740 150 505 6.20e-52 189
MS.gene45520.t1 AT4G17230 31.842 380 250 5 366 742 153 526 3.74e-51 187
MS.gene45520.t1 AT4G17230 31.842 380 250 5 366 742 153 526 3.74e-51 187
MS.gene45520.t1 AT3G54220 30.095 422 277 7 324 742 245 651 4.22e-51 189
MS.gene45520.t1 AT3G03450 29.894 378 251 8 366 740 178 544 5.46e-49 181
MS.gene45520.t1 AT2G01570 31.217 378 241 8 366 740 219 580 5.74e-49 182
MS.gene45520.t1 AT1G14920 31.746 378 239 8 366 740 167 528 1.45e-48 180
MS.gene45520.t1 AT5G66770 33.231 325 203 7 375 696 224 537 1.88e-47 177
MS.gene45520.t1 AT1G50420 26.047 430 250 8 371 740 57 478 3.86e-44 166
MS.gene45520.t1 AT5G17490 27.632 380 251 8 366 740 155 515 2.06e-42 162
MS.gene45520.t1 AT3G50650 30.294 340 212 7 381 711 185 508 2.42e-39 153
MS.gene45520.t1 AT1G63100 31.871 342 214 9 367 701 248 577 4.61e-39 154
MS.gene45520.t1 AT1G63100 31.871 342 214 9 367 701 273 602 5.55e-39 154
MS.gene45520.t1 AT5G41920 27.559 381 251 7 366 740 38 399 5.83e-39 149
MS.gene45520.t1 AT3G49950 28.900 391 248 12 371 742 30 409 4.43e-36 141
MS.gene45520.t1 AT5G52510 25.773 388 258 10 369 740 266 639 1.52e-35 143
MS.gene45520.t1 AT4G37650 26.463 393 262 9 370 742 145 530 1.12e-33 136
MS.gene45520.t1 AT1G55580 27.187 423 239 12 368 740 41 444 1.03e-30 126
MS.gene45520.t1 AT4G08250 24.885 434 286 18 326 740 64 476 5.35e-25 109
MS.gene45520.t1 AT3G13840 23.934 422 275 14 330 740 112 498 4.94e-18 88.6
MS.gene45520.t1 AT4G00150 23.969 388 245 12 366 740 203 553 4.60e-15 79.3
MS.gene45520.t1 AT5G67411 30.846 201 125 8 488 677 1 198 1.35e-11 65.1

Find 172 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTCACATTATTGATTT+TGG 0.112468 2.1:-6553399 MS.gene45520:CDS
CATCAAAGACAAAATCTTTA+TGG 0.121774 2.1:+6552689 None:intergenic
TCACCTGATACACCAGTTTC+TGG 0.203989 2.1:-6554386 MS.gene45520:CDS
TTGAATGGTTTCCCAGTTTC+GGG 0.204080 2.1:+6553176 None:intergenic
TTTGTTCAATCCATAGTAAA+TGG 0.225738 2.1:-6553009 MS.gene45520:CDS
TGTTGTGTTCCTACTGATTC+TGG 0.235374 2.1:-6554443 MS.gene45520:CDS
CTCAAATTCAAACTATGATT+TGG 0.236899 2.1:+6554320 None:intergenic
ATCTTCAAAGGTAGAATCTT+TGG 0.257325 2.1:+6554661 None:intergenic
CCTCATTGCTCTTAATATTA+AGG 0.263212 2.1:+6553145 None:intergenic
TTCGAGTTCAAATTTGAATT+CGG 0.281001 2.1:-6554036 MS.gene45520:CDS
TTTGAATGGTTTCCCAGTTT+CGG 0.285892 2.1:+6553175 None:intergenic
AGGCCATACCATCCCGAAAC+TGG 0.299357 2.1:-6553188 MS.gene45520:CDS
CAGCAGCACTAAACATCTTT+TGG 0.300712 2.1:+6553526 None:intergenic
AGGAAGCATTCTTCTCCTTC+AGG 0.315645 2.1:-6553642 MS.gene45520:CDS
TGCCGGTCGAAAGCCAGCTT+GGG 0.317241 2.1:+6553281 None:intergenic
TATCAAACATTGCAGAATAA+TGG 0.321158 2.1:+6552938 None:intergenic
ATTATAAGACCCATTTACTA+TGG 0.323109 2.1:+6552999 None:intergenic
AACTTCAGAACTGCATCTTT+AGG 0.332688 2.1:+6553057 None:intergenic
AAATCGTTAAGGTTTGGATT+TGG 0.332771 2.1:+6554749 None:intergenic
AGTGGCAGGTTAGGAATCTA+AGG 0.333559 2.1:-6552783 MS.gene45520:CDS
AATCTTCTTCCATTAGAATC+TGG 0.335576 2.1:+6554606 None:intergenic
CCACCAGAAACTGGTGTATC+AGG 0.337940 2.1:+6554383 None:intergenic
TCAAGATGGAGGGTGGTGTT+AGG 0.341116 2.1:-6554079 MS.gene45520:CDS
GGAATCTAAGGGCTGGCTTT+AGG 0.342541 2.1:-6552771 MS.gene45520:CDS
GCAGTTTAGAAAAGGGTTAG+AGG 0.342843 2.1:-6554204 MS.gene45520:CDS
TTCTTCTGAGACTAGGGTTA+TGG 0.353283 2.1:-6554261 MS.gene45520:CDS
TGTGGATTTGAGGACCCTTT+TGG 0.355547 2.1:-6553730 MS.gene45520:CDS
AAATATCTGATATGTTTGAT+AGG 0.361784 2.1:-6553887 MS.gene45520:CDS
TCGAGTTCAAATTTGAATTC+GGG 0.362583 2.1:-6554035 MS.gene45520:CDS
TACGTATGCTTCGGCTGGTT+GGG 0.371904 2.1:-6552626 MS.gene45520:CDS
ATGAATTGTTGAGGCAGATT+AGG 0.382955 2.1:-6553662 MS.gene45520:CDS
CAGCCGAAGCATACGTAATT+CGG 0.384019 2.1:+6552632 None:intergenic
ACATCAAGAGGGTGTTGATT+AGG 0.390520 2.1:+6554488 None:intergenic
GTTTCGAATCCGACAAAGTT+CGG 0.391177 2.1:+6554818 None:intergenic
CATACAAACAGTGGCAGGTT+AGG 0.391689 2.1:-6552792 MS.gene45520:CDS
CTGCCGGTCGAAAGCCAGCT+TGG 0.397922 2.1:+6553280 None:intergenic
ATTAAGGTCTTCAATTTGAA+TGG 0.400958 2.1:+6553161 None:intergenic
TTACGTATGCTTCGGCTGGT+TGG 0.401437 2.1:-6552627 MS.gene45520:CDS
CAAGATGGAGGGTGGTGTTA+GGG 0.405701 2.1:-6554078 MS.gene45520:CDS
CAATGTTTCCTTCGAATACA+AGG 0.408276 2.1:-6553208 MS.gene45520:CDS
ATGGTGAAATCGTTAAGGTT+TGG 0.408700 2.1:+6554743 None:intergenic
ATGCAGTTCTGAAGTTAATC+AGG 0.410047 2.1:-6553050 MS.gene45520:CDS
GAATTGGATGGGCCCACATA+AGG 0.415523 2.1:+6554713 None:intergenic
CTGCCACTGTTTGTATGTCT+CGG 0.422026 2.1:+6552798 None:intergenic
CTGTGTCTGCTAATGACAAT+AGG 0.426533 2.1:-6553692 MS.gene45520:CDS
GCAGAATCACCACCAGAAAC+TGG 0.429107 2.1:+6554374 None:intergenic
ATTTGGATTCTTCTGAGACT+AGG 0.434021 2.1:-6554268 MS.gene45520:CDS
ATATATAAGCCAGATTCTAA+TGG 0.435212 2.1:-6554615 MS.gene45520:CDS
AGTTCAAATTCGAATTCAAA+TGG 0.435366 2.1:-6554005 MS.gene45520:CDS
TAATGGCCAGATTTAGAGAT+AGG 0.438554 2.1:-6552726 MS.gene45520:CDS
TAGGCAACTCCCACTGGATA+AGG 0.439045 2.1:-6552752 MS.gene45520:CDS
TTTGGATTCTTCTGAGACTA+GGG 0.441086 2.1:-6554267 MS.gene45520:CDS
CACCATGACCAACCCTTATG+TGG 0.441330 2.1:-6554726 MS.gene45520:CDS
ACTCAGGTTGGTGAGCTTGA+TGG 0.441788 2.1:-6553795 MS.gene45520:CDS
TCTTAGCCTATCTCTAAATC+TGG 0.445660 2.1:+6552720 None:intergenic
TTCCCAGTTTCGGGATGGTA+TGG 0.447770 2.1:+6553185 None:intergenic
CGCATGGTTGGTGCTGGTAC+CGG 0.452661 2.1:-6553570 MS.gene45520:CDS
TGGTCATGGTGAAATCGTTA+AGG 0.453510 2.1:+6554738 None:intergenic
TTGTTCAATCCATAGTAAAT+GGG 0.464694 2.1:-6553008 MS.gene45520:CDS
AATTCCTGTGATCCTCAACT+TGG 0.465526 2.1:+6553311 None:intergenic
TCTTTGATGAAGATAACAAC+TGG 0.466798 2.1:-6552675 MS.gene45520:CDS
TTTAGTGTCTCATGAGCCTA+AGG 0.471760 2.1:-6554117 MS.gene45520:CDS
TGGCTTTAGGCAACTCCCAC+TGG 0.476205 2.1:-6552758 MS.gene45520:CDS
ACCATGGTCATCGAATTTGT+AGG 0.476706 2.1:+6554793 None:intergenic
GCAGAGAGAATAGAGGAAAC+TGG 0.479525 2.1:-6553261 MS.gene45520:CDS
GATAACAACTGGATGCTTCA+AGG 0.480041 2.1:-6552664 MS.gene45520:CDS
TCATATCCCGTGAAAATGAA+TGG 0.481425 2.1:-6552903 MS.gene45520:CDS
GCTATGGATCCGAACTTTGT+CGG 0.481965 2.1:-6554827 MS.gene45520:CDS
TGCCACTGTTTGTATGTCTC+GGG 0.483709 2.1:+6552799 None:intergenic
AGAGGGAAACTGTGGATTTG+AGG 0.483805 2.1:-6553740 MS.gene45520:CDS
TTATGTGGGCCCATCCAATT+CGG 0.491734 2.1:-6554711 MS.gene45520:CDS
AATTGGATGGGCCCACATAA+GGG 0.496632 2.1:+6554714 None:intergenic
TGGCTGTGAACTGTTTGGTA+AGG 0.497180 2.1:-6553119 MS.gene45520:CDS
CCCACTGGATAAGGAGGTAA+TGG 0.498395 2.1:-6552743 MS.gene45520:CDS
CGAATTACGTATGCTTCGGC+TGG 0.503997 2.1:-6552631 MS.gene45520:CDS
TTGAAGCGTGTGGAAAAGAA+AGG 0.504187 2.1:+6552973 None:intergenic
AATATCTGATATGTTTGATA+GGG 0.504258 2.1:-6553886 MS.gene45520:CDS
GGAACACAACAATTGCTACT+AGG 0.506690 2.1:+6554455 None:intergenic
CAAAGAAACAAGGGAGGAAG+AGG 0.506735 2.1:-6553758 MS.gene45520:CDS
TTGGATTTGGATCAGAGAGA+AGG 0.506756 2.1:+6554762 None:intergenic
TATTAAGAGCAATGAGGTAG+TGG 0.510345 2.1:-6553139 MS.gene45520:CDS
ACAACTGGATGCTTCAAGGT+TGG 0.515568 2.1:-6552660 MS.gene45520:CDS
GTTTCCTCTATTCTCTCTGC+CGG 0.517130 2.1:+6553264 None:intergenic
GTCTCATGAGCCTAAGGGTA+GGG 0.518003 2.1:-6554111 MS.gene45520:CDS
TCCCCAAGCTGGCTTTCGAC+CGG 0.518500 2.1:-6553283 MS.gene45520:CDS
CCATTACCTCCTTATCCAGT+GGG 0.519924 2.1:+6552743 None:intergenic
ACGAGTGGCTCCGAATTGGA+TGG 0.521140 2.1:+6554701 None:intergenic
AGGCCGAATTACGTATGCTT+CGG 0.526366 2.1:-6552635 MS.gene45520:CDS
CTCTGTGATGCATCACCTGA+AGG 0.529263 2.1:+6553627 None:intergenic
CCGCCCAAGTTGAGGATCAC+AGG 0.531779 2.1:-6553315 MS.gene45520:CDS
AGGTGATGCATCACAGAGAA+TGG 0.535230 2.1:-6553622 MS.gene45520:CDS
TACCAAAATCAATAATGTGA+AGG 0.537288 2.1:+6553397 None:intergenic
CATGAGCCTAAGGGTAGGGT+TGG 0.539617 2.1:-6554107 MS.gene45520:CDS
GCCGCTGTGTGCTGAACAAA+AGG 0.539825 2.1:-6553841 MS.gene45520:CDS
ACCAAAATCAATAATGTGAA+GGG 0.539883 2.1:+6553398 None:intergenic
TCAGTATGTTGAAGACTAAG+TGG 0.541144 2.1:+6554554 None:intergenic
GAAGCGCGCATGGTTGGTGC+TGG 0.541418 2.1:-6553576 MS.gene45520:CDS
GCCATTACCTCCTTATCCAG+TGG 0.541967 2.1:+6552742 None:intergenic
CATATATAATATTTGTGTAC+CGG 0.543480 2.1:+6553551 None:intergenic
TAGGGTTGGAGTGATCAAGA+TGG 0.543815 2.1:-6554093 MS.gene45520:CDS
GGAATTGAGTATCCCCAAGC+TGG 0.546615 2.1:-6553294 MS.gene45520:CDS
GTATCTTATATGGTTTCCAG+TGG 0.547028 2.1:-6553377 MS.gene45520:CDS
TCAGTAACATATGATTATGC+TGG 0.547185 2.1:+6552601 None:intergenic
GGTAGTGGCTGTGAACTGTT+TGG 0.549486 2.1:-6553124 MS.gene45520:CDS
GGTTGGAGTGATCAAGATGG+AGG 0.554472 2.1:-6554090 MS.gene45520:CDS
TGAAGCGTGTGGAAAAGAAA+GGG 0.554500 2.1:+6552974 None:intergenic
CTTGTGCACAAAGAACCAAA+AGG 0.555209 2.1:+6553715 None:intergenic
GCGATTGAAGCGCGCATGGT+TGG 0.557291 2.1:-6553582 MS.gene45520:CDS
CAAGAAAGTGATGATGAAGA+AGG 0.558689 2.1:-6553951 MS.gene45520:CDS
ACTGGTGTATCAGGTGAAAG+TGG 0.559980 2.1:+6554392 None:intergenic
CGAGACATACAAACAGTGGC+AGG 0.561859 2.1:-6552797 MS.gene45520:CDS
ACCATGACCAACCCTTATGT+GGG 0.562138 2.1:-6554725 MS.gene45520:CDS
CAGGTTAGGAATCTAAGGGC+TGG 0.564666 2.1:-6552778 MS.gene45520:CDS
GGCCATACCATCCCGAAACT+GGG 0.564944 2.1:-6553187 MS.gene45520:CDS
TCGACCGGCAGAGAGAATAG+AGG 0.567756 2.1:-6553268 MS.gene45520:CDS
ACTTAATAAGAATTGGCCAC+TGG 0.572363 2.1:+6553361 None:intergenic
CTACAACATTCATAATCTCC+CGG 0.577244 2.1:+6552851 None:intergenic
ATGAATGTTGTAGCATGTGA+AGG 0.579064 2.1:-6552841 MS.gene45520:CDS
AGTAATAGTAATATTAGTGA+CGG 0.580144 2.1:-6554299 MS.gene45520:CDS
TTGTGCACAAAGAACCAAAA+GGG 0.580206 2.1:+6553716 None:intergenic
ATGGTTTCCCAGTTTCGGGA+TGG 0.581937 2.1:+6553180 None:intergenic
CTGTGTGCTGAACAAAAGGA+TGG 0.582319 2.1:-6553837 MS.gene45520:CDS
TGGTGAGCTTGATGGAGGGA+AGG 0.582460 2.1:-6553787 MS.gene45520:CDS
CAGGTTGGTGAGCTTGATGG+AGG 0.586798 2.1:-6553792 MS.gene45520:CDS
TTAGAGATAGGCTAAGAGAA+TGG 0.591729 2.1:-6552714 MS.gene45520:CDS
GGATGGGCCCACATAAGGGT+TGG 0.592672 2.1:+6554718 None:intergenic
ATTCCTGTGATCCTCAACTT+GGG 0.595375 2.1:+6553312 None:intergenic
GGAATCTCAAGAACATCAAG+AGG 0.598639 2.1:+6554476 None:intergenic
TGGATGCTTCAAGGTTGGAA+AGG 0.598660 2.1:-6552655 MS.gene45520:CDS
CGAGTGGCTCCGAATTGGAT+GGG 0.599028 2.1:+6554702 None:intergenic
AAATGCGATTGAAGCGCGCA+TGG 0.606624 2.1:-6553586 MS.gene45520:CDS
GTTGGAGTGATCAAGATGGA+GGG 0.607035 2.1:-6554089 MS.gene45520:CDS
GAACTATTACCAGAATCAGT+AGG 0.607462 2.1:+6554434 None:intergenic
GGAGTGATCAAGATGGAGGG+TGG 0.608714 2.1:-6554086 MS.gene45520:CDS
AAGTGACTCCTTGAAGCGTG+TGG 0.608768 2.1:+6552963 None:intergenic
TGTCTCATGAGCCTAAGGGT+AGG 0.616168 2.1:-6554112 MS.gene45520:CDS
CAGTATGTTGAAGACTAAGT+GGG 0.617757 2.1:+6554555 None:intergenic
GCCCACATAAGGGTTGGTCA+TGG 0.617923 2.1:+6554724 None:intergenic
TGGTATGGCCTTGTATTCGA+AGG 0.618500 2.1:+6553200 None:intergenic
AGATATTTCACTCTCCTCAA+CGG 0.618626 2.1:+6553902 None:intergenic
GCCGGTCGAAAGCCAGCTTG+GGG 0.629257 2.1:+6553282 None:intergenic
GCAGTCTGCGGTTTCCGTTG+AGG 0.630810 2.1:-6553916 MS.gene45520:CDS
AGGTTGGTGAGCTTGATGGA+GGG 0.634801 2.1:-6553791 MS.gene45520:CDS
AGTGGTGGAGAGTAGAACTC+AGG 0.634916 2.1:-6553811 MS.gene45520:CDS
AGGGTGGACCGCCCAAGTTG+AGG 0.637482 2.1:-6553323 MS.gene45520:CDS
AAGGCGCGTTCAAAGAAACA+AGG 0.637588 2.1:-6553768 MS.gene45520:CDS
ACAAAAGGATGGATCAGTGG+TGG 0.638622 2.1:-6553826 MS.gene45520:CDS
AGAGAATAGAGGAAACTGGC+CGG 0.638860 2.1:-6553257 MS.gene45520:CDS
GCAACTCCCACTGGATAAGG+AGG 0.639677 2.1:-6552749 MS.gene45520:CDS
CACAATAGTTAGCTAAACGC+CGG 0.640868 2.1:+6553238 None:intergenic
ACCTACAAATTCGATGACCA+TGG 0.643298 2.1:-6554794 MS.gene45520:CDS
AGTGGGTCATAACACATACA+AGG 0.643891 2.1:+6554572 None:intergenic
CCTGTGATCCTCAACTTGGG+CGG 0.645438 2.1:+6553315 None:intergenic
ATCACTCCAACCCTACCCTT+AGG 0.645813 2.1:+6554101 None:intergenic
TTAGTGTCTCATGAGCCTAA+GGG 0.648279 2.1:-6554116 MS.gene45520:CDS
GTGGCAGGTTAGGAATCTAA+GGG 0.650267 2.1:-6552782 MS.gene45520:CDS
GGACTGCTAATGAATTGTTG+AGG 0.659007 2.1:-6553671 MS.gene45520:CDS
CCTGATACACCAGTTTCTGG+TGG 0.666329 2.1:-6554383 MS.gene45520:CDS
AAAGAAACAAGGGAGGAAGA+GGG 0.670101 2.1:-6553757 MS.gene45520:CDS
GAAGCGTGTGGAAAAGAAAG+GGG 0.671904 2.1:+6552975 None:intergenic
AGGGAGGAAGAGGGAAACTG+TGG 0.673382 2.1:-6553748 MS.gene45520:CDS
GGCCCGAGACATACAAACAG+TGG 0.676458 2.1:-6552801 MS.gene45520:CDS
CCTTAATATTAAGAGCAATG+AGG 0.678676 2.1:-6553145 MS.gene45520:CDS
AGAGAAGGATTAGATTACCA+TGG 0.679431 2.1:+6554777 None:intergenic
CGCGTTCAAAGAAACAAGGG+AGG 0.679934 2.1:-6553764 MS.gene45520:CDS
AAGAAGTAACAAGCAGTCTG+CGG 0.680051 2.1:-6553928 MS.gene45520:CDS
GAATCTCAAGAACATCAAGA+GGG 0.681038 2.1:+6554477 None:intergenic
ATGGATTGAACAAATATGCG+CGG 0.684340 2.1:+6553018 None:intergenic
GTGGAGAGTAGAACTCAGGT+TGG 0.686821 2.1:-6553807 MS.gene45520:CDS
TGAACAAAAGGATGGATCAG+TGG 0.692488 2.1:-6553829 MS.gene45520:CDS
AGGCGCGTTCAAAGAAACAA+GGG 0.710494 2.1:-6553767 MS.gene45520:CDS
TATCCCGTGAAAATGAATGG+AGG 0.724072 2.1:-6552900 MS.gene45520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATCTGATATGTTTGAT+AGG - chr2.1:6553552-6553571 MS.gene45520:CDS 20.0%
!! AATATCTGATATGTTTGATA+GGG - chr2.1:6553553-6553572 MS.gene45520:CDS 20.0%
!! AGTAATAGTAATATTAGTGA+CGG - chr2.1:6553140-6553159 MS.gene45520:CDS 20.0%
!! CATATATAATATTTGTGTAC+CGG + chr2.1:6553891-6553910 None:intergenic 20.0%
!! GACAAAAACTTAATAAGAAT+TGG + chr2.1:6554088-6554107 None:intergenic 20.0%
!!! AAATGTGCAAATTTTTTGAA+AGG + chr2.1:6553977-6553996 None:intergenic 20.0%
!!! AATGTGCAAATTTTTTGAAA+GGG + chr2.1:6553976-6553995 None:intergenic 20.0%
!!! ATTGATTTTGGTATCTTATA+TGG - chr2.1:6554052-6554071 MS.gene45520:CDS 20.0%
! ACCAAAATCAATAATGTGAA+GGG + chr2.1:6554044-6554063 None:intergenic 25.0%
! AGTTCAAATTCGAATTCAAA+TGG - chr2.1:6553434-6553453 MS.gene45520:CDS 25.0%
! ATATATAAGCCAGATTCTAA+TGG - chr2.1:6552824-6552843 MS.gene45520:CDS 25.0%
! ATTAAGGTCTTCAATTTGAA+TGG + chr2.1:6554281-6554300 None:intergenic 25.0%
! ATTATAAGACCCATTTACTA+TGG + chr2.1:6554443-6554462 None:intergenic 25.0%
! CATCAAAGACAAAATCTTTA+TGG + chr2.1:6554753-6554772 None:intergenic 25.0%
! CTCAAATTCAAACTATGATT+TGG + chr2.1:6553122-6553141 None:intergenic 25.0%
! TACCAAAATCAATAATGTGA+AGG + chr2.1:6554045-6554064 None:intergenic 25.0%
! TATCAAACATTGCAGAATAA+TGG + chr2.1:6554504-6554523 None:intergenic 25.0%
! TTGTTCAATCCATAGTAAAT+GGG - chr2.1:6554431-6554450 MS.gene45520:CDS 25.0%
! TTTGTTCAATCCATAGTAAA+TGG - chr2.1:6554430-6554449 MS.gene45520:CDS 25.0%
!! AAGTTTTTGTCAAAAGTAGA+GGG - chr2.1:6554097-6554116 MS.gene45520:CDS 25.0%
!! CTATTTTGCAGTTTAGAAAA+GGG - chr2.1:6553228-6553247 MS.gene45520:CDS 25.0%
!! GAAAATTTTCTTTGATGCTT+TGG - chr2.1:6552908-6552927 MS.gene45520:CDS 25.0%
!! TAAGTTTTTGTCAAAAGTAG+AGG - chr2.1:6554096-6554115 MS.gene45520:CDS 25.0%
!! TCTATTTTGCAGTTTAGAAA+AGG - chr2.1:6553227-6553246 MS.gene45520:CDS 25.0%
!! TTCGAGTTCAAATTTGAATT+CGG - chr2.1:6553403-6553422 MS.gene45520:CDS 25.0%
AAATCGTTAAGGTTTGGATT+TGG + chr2.1:6552693-6552712 None:intergenic 30.0%
AATCTTCTTCCATTAGAATC+TGG + chr2.1:6552836-6552855 None:intergenic 30.0%
ATCTTCAAAGGTAGAATCTT+TGG + chr2.1:6552781-6552800 None:intergenic 30.0%
CCTCATTGCTCTTAATATTA+AGG + chr2.1:6554297-6554316 None:intergenic 30.0%
CCTTAATATTAAGAGCAATG+AGG - chr2.1:6554294-6554313 MS.gene45520:CDS 30.0%
TCGAGTTCAAATTTGAATTC+GGG - chr2.1:6553404-6553423 MS.gene45520:CDS 30.0%
TCTTTGATGAAGATAACAAC+TGG - chr2.1:6554764-6554783 MS.gene45520:CDS 30.0%
TGAAAAATCAGCATCTTCAA+AGG + chr2.1:6552793-6552812 None:intergenic 30.0%
! ATGATTGAGAGAGAGTTTTT+GGG - chr2.1:6554565-6554584 MS.gene45520:CDS 30.0%
!! GATTTTGAAAACAGCTGAAA+AGG - chr2.1:6554012-6554031 MS.gene45520:CDS 30.0%
!!! ACCCTTCACATTATTGATTT+TGG - chr2.1:6554040-6554059 MS.gene45520:CDS 30.0%
AACTTCAGAACTGCATCTTT+AGG + chr2.1:6554385-6554404 None:intergenic 35.0%
ACTTAATAAGAATTGGCCAC+TGG + chr2.1:6554081-6554100 None:intergenic 35.0%
AGAGAAGGATTAGATTACCA+TGG + chr2.1:6552665-6552684 None:intergenic 35.0%
AGATATTTCACTCTCCTCAA+CGG + chr2.1:6553540-6553559 None:intergenic 35.0%
ATGAATGTTGTAGCATGTGA+AGG - chr2.1:6554598-6554617 MS.gene45520:CDS 35.0%
ATGAATTGTTGAGGCAGATT+AGG - chr2.1:6553777-6553796 MS.gene45520:CDS 35.0%
ATGGTGAAATCGTTAAGGTT+TGG + chr2.1:6552699-6552718 None:intergenic 35.0%
CAATGTTTCCTTCGAATACA+AGG - chr2.1:6554231-6554250 MS.gene45520:CDS 35.0%
CAGTATGTTGAAGACTAAGT+GGG + chr2.1:6552887-6552906 None:intergenic 35.0%
CTACAACATTCATAATCTCC+CGG + chr2.1:6554591-6554610 None:intergenic 35.0%
GAACTATTACCAGAATCAGT+AGG + chr2.1:6553008-6553027 None:intergenic 35.0%
GAATCTCAAGAACATCAAGA+GGG + chr2.1:6552965-6552984 None:intergenic 35.0%
GTATCTTATATGGTTTCCAG+TGG - chr2.1:6554062-6554081 MS.gene45520:CDS 35.0%
TAATGGCCAGATTTAGAGAT+AGG - chr2.1:6554713-6554732 MS.gene45520:CDS 35.0%
TATTAAGAGCAATGAGGTAG+TGG - chr2.1:6554300-6554319 MS.gene45520:CDS 35.0%
TCAGTATGTTGAAGACTAAG+TGG + chr2.1:6552888-6552907 None:intergenic 35.0%
TCATATCCCGTGAAAATGAA+TGG - chr2.1:6554536-6554555 MS.gene45520:CDS 35.0%
TCTTAGCCTATCTCTAAATC+TGG + chr2.1:6554722-6554741 None:intergenic 35.0%
TTAGAGATAGGCTAAGAGAA+TGG - chr2.1:6554725-6554744 MS.gene45520:CDS 35.0%
TTGTGCACAAAGAACCAAAA+GGG + chr2.1:6553726-6553745 None:intergenic 35.0%
TTTGAATGGTTTCCCAGTTT+CGG + chr2.1:6554267-6554286 None:intergenic 35.0%
! ATGGATTGAACAAATATGCG+CGG + chr2.1:6554424-6554443 None:intergenic 35.0%
! CAAAAAGCTCAGCTTTTTAC+TGG - chr2.1:6553278-6553297 MS.gene45520:CDS 35.0%
! CAAGAAAGTGATGATGAAGA+AGG - chr2.1:6553488-6553507 MS.gene45520:CDS 35.0%
! GATGATTGAGAGAGAGTTTT+TGG - chr2.1:6554564-6554583 MS.gene45520:CDS 35.0%
! GTAAAAAGCTGAGCTTTTTG+AGG + chr2.1:6553278-6553297 None:intergenic 35.0%
! TTTTTGTCAAAAGTAGAGGG+TGG - chr2.1:6554100-6554119 MS.gene45520:CDS 35.0%
!! ATGCAGTTCTGAAGTTAATC+AGG - chr2.1:6554389-6554408 MS.gene45520:CDS 35.0%
!! ATTTGGATTCTTCTGAGACT+AGG - chr2.1:6553171-6553190 MS.gene45520:CDS 35.0%
!! TAGTGACGGTGTTTTTGATT+TGG - chr2.1:6553154-6553173 MS.gene45520:CDS 35.0%
!! TTTGGATTCTTCTGAGACTA+GGG - chr2.1:6553172-6553191 MS.gene45520:CDS 35.0%
AAAGAAACAAGGGAGGAAGA+GGG - chr2.1:6553682-6553701 MS.gene45520:CDS 40.0%
AAGAAGTAACAAGCAGTCTG+CGG - chr2.1:6553511-6553530 MS.gene45520:CDS 40.0%
AATTCCTGTGATCCTCAACT+TGG + chr2.1:6554131-6554150 None:intergenic 40.0%
ACCATGGTCATCGAATTTGT+AGG + chr2.1:6552649-6552668 None:intergenic 40.0%
ACCTACAAATTCGATGACCA+TGG - chr2.1:6552645-6552664 MS.gene45520:CDS 40.0%
AGTGGGTCATAACACATACA+AGG + chr2.1:6552870-6552889 None:intergenic 40.0%
ATTCCTGTGATCCTCAACTT+GGG + chr2.1:6554130-6554149 None:intergenic 40.0%
CACAATAGTTAGCTAAACGC+CGG + chr2.1:6554204-6554223 None:intergenic 40.0%
CTGTGTCTGCTAATGACAAT+AGG - chr2.1:6553747-6553766 MS.gene45520:CDS 40.0%
CTTGTGCACAAAGAACCAAA+AGG + chr2.1:6553727-6553746 None:intergenic 40.0%
GATAACAACTGGATGCTTCA+AGG - chr2.1:6554775-6554794 MS.gene45520:CDS 40.0%
GCAGTTTAGAAAAGGGTTAG+AGG - chr2.1:6553235-6553254 MS.gene45520:CDS 40.0%
GCATCAGAAGAAAAAACGAG+TGG + chr2.1:6552756-6552775 None:intergenic 40.0%
GGAACACAACAATTGCTACT+AGG + chr2.1:6552987-6553006 None:intergenic 40.0%
GGAATCTCAAGAACATCAAG+AGG + chr2.1:6552966-6552985 None:intergenic 40.0%
GGACTGCTAATGAATTGTTG+AGG - chr2.1:6553768-6553787 MS.gene45520:CDS 40.0%
GGCAAGCAGAGATAAAAACT+TGG + chr2.1:6553955-6553974 None:intergenic 40.0%
GTTTCGAATCCGACAAAGTT+CGG + chr2.1:6552624-6552643 None:intergenic 40.0%
TATCCCGTGAAAATGAATGG+AGG - chr2.1:6554539-6554558 MS.gene45520:CDS 40.0%
TGAACAAAAGGATGGATCAG+TGG - chr2.1:6553610-6553629 MS.gene45520:CDS 40.0%
TGAAGCGTGTGGAAAAGAAA+GGG + chr2.1:6554468-6554487 None:intergenic 40.0%
TGGTCATGGTGAAATCGTTA+AGG + chr2.1:6552704-6552723 None:intergenic 40.0%
TTAGTGTCTCATGAGCCTAA+GGG - chr2.1:6553323-6553342 MS.gene45520:CDS 40.0%
TTGAAGCGTGTGGAAAAGAA+AGG + chr2.1:6554469-6554488 None:intergenic 40.0%
TTGAATGGTTTCCCAGTTTC+GGG + chr2.1:6554266-6554285 None:intergenic 40.0%
TTGGATTTGGATCAGAGAGA+AGG + chr2.1:6552680-6552699 None:intergenic 40.0%
TTTAGTGTCTCATGAGCCTA+AGG - chr2.1:6553322-6553341 MS.gene45520:CDS 40.0%
! CAGCAGCACTAAACATCTTT+TGG + chr2.1:6553916-6553935 None:intergenic 40.0%
! TCGACCTCCATTCATTTTCA+CGG + chr2.1:6554546-6554565 None:intergenic 40.0%
! TTTCTTTTCCACACGCTTCA+AGG - chr2.1:6554468-6554487 MS.gene45520:CDS 40.0%
!! ACATCAAGAGGGTGTTGATT+AGG + chr2.1:6552954-6552973 None:intergenic 40.0%
!! TGTTGTGTTCCTACTGATTC+TGG - chr2.1:6552996-6553015 MS.gene45520:CDS 40.0%
!! TTCTTCTGAGACTAGGGTTA+TGG - chr2.1:6553178-6553197 MS.gene45520:CDS 40.0%
!!! AGCATGTGAAGGTTTTGAGA+GGG - chr2.1:6554609-6554628 MS.gene45520:CDS 40.0%
!!! TAGCATGTGAAGGTTTTGAG+AGG - chr2.1:6554608-6554627 MS.gene45520:CDS 40.0%
AAAAACGAGTGGCTCCGAAT+TGG + chr2.1:6552745-6552764 None:intergenic 45.0%
AAGGCGCGTTCAAAGAAACA+AGG - chr2.1:6553671-6553690 MS.gene45520:CDS 45.0%
AATTGGATGGGCCCACATAA+GGG + chr2.1:6552728-6552747 None:intergenic 45.0%
ACAAAAGGATGGATCAGTGG+TGG - chr2.1:6553613-6553632 MS.gene45520:CDS 45.0%
ACAACTGGATGCTTCAAGGT+TGG - chr2.1:6554779-6554798 MS.gene45520:CDS 45.0%
ACCATGACCAACCCTTATGT+GGG - chr2.1:6552714-6552733 MS.gene45520:CDS 45.0%
ACTGGTGTATCAGGTGAAAG+TGG + chr2.1:6553050-6553069 None:intergenic 45.0%
AGAGAATAGAGGAAACTGGC+CGG - chr2.1:6554182-6554201 MS.gene45520:CDS 45.0%
AGAGGGAAACTGTGGATTTG+AGG - chr2.1:6553699-6553718 MS.gene45520:CDS 45.0%
AGGCCGAATTACGTATGCTT+CGG - chr2.1:6554804-6554823 MS.gene45520:CDS 45.0%
AGGCGCGTTCAAAGAAACAA+GGG - chr2.1:6553672-6553691 MS.gene45520:CDS 45.0%
AGGTGATGCATCACAGAGAA+TGG - chr2.1:6553817-6553836 MS.gene45520:CDS 45.0%
AGTGGCAGGTTAGGAATCTA+AGG - chr2.1:6554656-6554675 MS.gene45520:CDS 45.0%
CAAAGAAACAAGGGAGGAAG+AGG - chr2.1:6553681-6553700 MS.gene45520:CDS 45.0%
CAGCCGAAGCATACGTAATT+CGG + chr2.1:6554810-6554829 None:intergenic 45.0%
CATACAAACAGTGGCAGGTT+AGG - chr2.1:6554647-6554666 MS.gene45520:CDS 45.0%
CCATTACCTCCTTATCCAGT+GGG + chr2.1:6554699-6554718 None:intergenic 45.0%
CTGCCACTGTTTGTATGTCT+CGG + chr2.1:6554644-6554663 None:intergenic 45.0%
CTGTGTGCTGAACAAAAGGA+TGG - chr2.1:6553602-6553621 MS.gene45520:CDS 45.0%
GAAGCGTGTGGAAAAGAAAG+GGG + chr2.1:6554467-6554486 None:intergenic 45.0%
GCAGAGAGAATAGAGGAAAC+TGG - chr2.1:6554178-6554197 MS.gene45520:CDS 45.0%
GTGGCAGGTTAGGAATCTAA+GGG - chr2.1:6554657-6554676 MS.gene45520:CDS 45.0%
GTTGGAGTGATCAAGATGGA+GGG - chr2.1:6553350-6553369 MS.gene45520:CDS 45.0%
GTTTCCTCTATTCTCTCTGC+CGG + chr2.1:6554178-6554197 None:intergenic 45.0%
TAGGGTTGGAGTGATCAAGA+TGG - chr2.1:6553346-6553365 MS.gene45520:CDS 45.0%
TCACCTGATACACCAGTTTC+TGG - chr2.1:6553053-6553072 MS.gene45520:CDS 45.0%
TGCCACTGTTTGTATGTCTC+GGG + chr2.1:6554643-6554662 None:intergenic 45.0%
TGGATGCTTCAAGGTTGGAA+AGG - chr2.1:6554784-6554803 MS.gene45520:CDS 45.0%
TGGCTGTGAACTGTTTGGTA+AGG - chr2.1:6554320-6554339 MS.gene45520:CDS 45.0%
TTATGTGGGCCCATCCAATT+CGG - chr2.1:6552728-6552747 MS.gene45520:CDS 45.0%
! CGACCTCCATTCATTTTCAC+GGG + chr2.1:6554545-6554564 None:intergenic 45.0%
! TCCTTTTGTTCAGCACACAG+CGG + chr2.1:6553602-6553621 None:intergenic 45.0%
! TGTGGATTTGAGGACCCTTT+TGG - chr2.1:6553709-6553728 MS.gene45520:CDS 45.0%
!! AGGAAGCATTCTTCTCCTTC+AGG - chr2.1:6553797-6553816 MS.gene45520:CDS 45.0%
!! TGGTATGGCCTTGTATTCGA+AGG + chr2.1:6554242-6554261 None:intergenic 45.0%
!! TTGAGAGAGAGTTTTTGGGC+CGG - chr2.1:6554569-6554588 MS.gene45520:CDS 45.0%
!!! AAGGTTTTGAGAGGGTTGAG+AGG - chr2.1:6554617-6554636 MS.gene45520:CDS 45.0%
AAATGCGATTGAAGCGCGCA+TGG - chr2.1:6553853-6553872 MS.gene45520:CDS 50.0%
AAGTGACTCCTTGAAGCGTG+TGG + chr2.1:6554479-6554498 None:intergenic 50.0%
ATCACTCCAACCCTACCCTT+AGG + chr2.1:6553341-6553360 None:intergenic 50.0%
ATGGTTTCCCAGTTTCGGGA+TGG + chr2.1:6554262-6554281 None:intergenic 50.0%
CACCATGACCAACCCTTATG+TGG - chr2.1:6552713-6552732 MS.gene45520:CDS 50.0%
CAGGTTAGGAATCTAAGGGC+TGG - chr2.1:6554661-6554680 MS.gene45520:CDS 50.0%
CCACCAGAAACTGGTGTATC+AGG + chr2.1:6553059-6553078 None:intergenic 50.0%
CCCACTGGATAAGGAGGTAA+TGG - chr2.1:6554696-6554715 MS.gene45520:CDS 50.0%
CGAATTACGTATGCTTCGGC+TGG - chr2.1:6554808-6554827 MS.gene45520:CDS 50.0%
CGAGACATACAAACAGTGGC+AGG - chr2.1:6554642-6554661 MS.gene45520:CDS 50.0%
CGCGTTCAAAGAAACAAGGG+AGG - chr2.1:6553675-6553694 MS.gene45520:CDS 50.0%
CTCTGTGATGCATCACCTGA+AGG + chr2.1:6553815-6553834 None:intergenic 50.0%
GAATTGGATGGGCCCACATA+AGG + chr2.1:6552729-6552748 None:intergenic 50.0%
GCAGAATCACCACCAGAAAC+TGG + chr2.1:6553068-6553087 None:intergenic 50.0%
GCCATTACCTCCTTATCCAG+TGG + chr2.1:6554700-6554719 None:intergenic 50.0%
GGAATTGAGTATCCCCAAGC+TGG - chr2.1:6554145-6554164 MS.gene45520:CDS 50.0%
GGTTGGAGTGATCAAGATGG+AGG - chr2.1:6553349-6553368 MS.gene45520:CDS 50.0%
GTCTCATGAGCCTAAGGGTA+GGG - chr2.1:6553328-6553347 MS.gene45520:CDS 50.0%
GTGGAGAGTAGAACTCAGGT+TGG - chr2.1:6553632-6553651 MS.gene45520:CDS 50.0%
TAGGCAACTCCCACTGGATA+AGG - chr2.1:6554687-6554706 MS.gene45520:CDS 50.0%
TCAAGATGGAGGGTGGTGTT+AGG - chr2.1:6553360-6553379 MS.gene45520:CDS 50.0%
TGTCTCATGAGCCTAAGGGT+AGG - chr2.1:6553327-6553346 MS.gene45520:CDS 50.0%
TTACGTATGCTTCGGCTGGT+TGG - chr2.1:6554812-6554831 MS.gene45520:CDS 50.0%
TTCCCAGTTTCGGGATGGTA+TGG + chr2.1:6554257-6554276 None:intergenic 50.0%
! AGTGGTGGAGAGTAGAACTC+AGG - chr2.1:6553628-6553647 MS.gene45520:CDS 50.0%
! CAAGATGGAGGGTGGTGTTA+GGG - chr2.1:6553361-6553380 MS.gene45520:CDS 50.0%
! CCTGATACACCAGTTTCTGG+TGG - chr2.1:6553056-6553075 MS.gene45520:CDS 50.0%
! GGTAGTGGCTGTGAACTGTT+TGG - chr2.1:6554315-6554334 MS.gene45520:CDS 50.0%
! TACGTATGCTTCGGCTGGTT+GGG - chr2.1:6554813-6554832 MS.gene45520:CDS 50.0%
!! ACTCAGGTTGGTGAGCTTGA+TGG - chr2.1:6553644-6553663 MS.gene45520:CDS 50.0%
!! AGGTTGGTGAGCTTGATGGA+GGG - chr2.1:6553648-6553667 MS.gene45520:CDS 50.0%
!! GGAATCTAAGGGCTGGCTTT+AGG - chr2.1:6554668-6554687 MS.gene45520:CDS 50.0%
!! TGAGAGAGAGTTTTTGGGCC+GGG - chr2.1:6554570-6554589 MS.gene45520:CDS 50.0%
ACGAGTGGCTCCGAATTGGA+TGG + chr2.1:6552741-6552760 None:intergenic 55.0%
AGGCCATACCATCCCGAAAC+TGG - chr2.1:6554251-6554270 MS.gene45520:CDS 55.0%
AGGGAGGAAGAGGGAAACTG+TGG - chr2.1:6553691-6553710 MS.gene45520:CDS 55.0%
CATGAGCCTAAGGGTAGGGT+TGG - chr2.1:6553332-6553351 MS.gene45520:CDS 55.0%
CCTGTGATCCTCAACTTGGG+CGG + chr2.1:6554127-6554146 None:intergenic 55.0%
CGAGTGGCTCCGAATTGGAT+GGG + chr2.1:6552740-6552759 None:intergenic 55.0%
GCAACTCCCACTGGATAAGG+AGG - chr2.1:6554690-6554709 MS.gene45520:CDS 55.0%
GCCGCTGTGTGCTGAACAAA+AGG - chr2.1:6553598-6553617 MS.gene45520:CDS 55.0%
GGAGTGATCAAGATGGAGGG+TGG - chr2.1:6553353-6553372 MS.gene45520:CDS 55.0%
GGCCATACCATCCCGAAACT+GGG - chr2.1:6554252-6554271 MS.gene45520:CDS 55.0%
GGCCCGAGACATACAAACAG+TGG - chr2.1:6554638-6554657 MS.gene45520:CDS 55.0%
TCGACCGGCAGAGAGAATAG+AGG - chr2.1:6554171-6554190 MS.gene45520:CDS 55.0%
TGGTGAGCTTGATGGAGGGA+AGG - chr2.1:6553652-6553671 MS.gene45520:CDS 55.0%
!! CAGGTTGGTGAGCTTGATGG+AGG - chr2.1:6553647-6553666 MS.gene45520:CDS 55.0%
!! GCCCACATAAGGGTTGGTCA+TGG + chr2.1:6552718-6552737 None:intergenic 55.0%
!! TGGCTTTAGGCAACTCCCAC+TGG - chr2.1:6554681-6554700 MS.gene45520:CDS 55.0%
GCAGTCTGCGGTTTCCGTTG+AGG - chr2.1:6553523-6553542 MS.gene45520:CDS 60.0%
GCGATTGAAGCGCGCATGGT+TGG - chr2.1:6553857-6553876 MS.gene45520:CDS 60.0%
GGATGGGCCCACATAAGGGT+TGG + chr2.1:6552724-6552743 None:intergenic 60.0%
TGCCGGTCGAAAGCCAGCTT+GGG + chr2.1:6554161-6554180 None:intergenic 60.0%
! CCGCCCAAGTTGAGGATCAC+AGG - chr2.1:6554124-6554143 MS.gene45520:CDS 60.0%
!! CGCATGGTTGGTGCTGGTAC+CGG - chr2.1:6553869-6553888 MS.gene45520:CDS 60.0%
!! TCCCCAAGCTGGCTTTCGAC+CGG - chr2.1:6554156-6554175 MS.gene45520:CDS 60.0%
AGGGTGGACCGCCCAAGTTG+AGG - chr2.1:6554116-6554135 MS.gene45520:CDS 65.0%
CTGCCGGTCGAAAGCCAGCT+TGG + chr2.1:6554162-6554181 None:intergenic 65.0%
GCCGGTCGAAAGCCAGCTTG+GGG + chr2.1:6554160-6554179 None:intergenic 65.0%
! GAAGCGCGCATGGTTGGTGC+TGG - chr2.1:6553863-6553882 MS.gene45520:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 6552615 6554846 6552615 ID=MS.gene45520
chr2.1 mRNA 6552615 6554846 6552615 ID=MS.gene45520.t1;Parent=MS.gene45520
chr2.1 exon 6552615 6554846 6552615 ID=MS.gene45520.t1.exon1;Parent=MS.gene45520.t1
chr2.1 CDS 6552615 6554846 6552615 ID=cds.MS.gene45520.t1;Parent=MS.gene45520.t1
Gene Sequence

>MS.gene45520

ATGGATCCGAACTTTGTCGGATTCGAAACAACCTACAAATTCGATGACCATGGTAATCTAATCCTTCTCTCTGATCCAAATCCAAACCTTAACGATTTCACCATGACCAACCCTTATGTGGGCCCATCCAATTCGGAGCCACTCGTTTTTTCTTCTGATGCAACCAAAGATTCTACCTTTGAAGATGCTGATTTTTCAGAAACTGTGAAATATATAAGCCAGATTCTAATGGAAGAAGATTTTGAACAAAAACCTTGTATGTGTTATGACCCACTTAGTCTTCAACATACTGAGAAAATTTTCTTTGATGCTTTGGAATCAAATTTGTCTCTTTCACCTAATCAACACCCTCTTGATGTTCTTGAGATTCCTAGTAGCAATTGTTGTGTTCCTACTGATTCTGGTAATAGTTCTAGTTCTAATGAGTTGAAACCACTTTCACCTGATACACCAGTTTCTGGTGGTGATTCTGCTTTTAATTCAGCGAAGTCTCAGTTTATTGTTCCAAATCATAGTTTGAATTTGAGTAATAGTAATATTAGTGACGGTGTTTTTGATTTGGATTCTTCTGAGACTAGGGTTATGGCTCAAAATATTTTTAGTGACGCTGATTCTATTTTGCAGTTTAGAAAAGGGTTAGAGGAAGCTAGCAAGTTTCTTCCTCAAAAAGCTCAGCTTTTTACTGGTTTTGAGAATGCTAGTGATAGTTTAGTGTCTCATGAGCCTAAGGGTAGGGTTGGAGTGATCAAGATGGAGGGTGGTGTTAGGGAGAACTCGAATTCGAGTTATTCGAGTTCAAATTTGAATTCGGGTTATTCGAGTTCAAATTCGAATTCAAATGGTTTGTTGAAGAGTAGAAAGAATCACGAGCGTCAAGAAAGTGATGATGAAGAAGGAAGAAGTAACAAGCAGTCTGCGGTTTCCGTTGAGGAGAGTGAAATATCTGATATGTTTGATAGGGTTTTGCTTAGTGTTGAAAATGTGCCGCTGTGTGCTGAACAAAAGGATGGATCAGTGGTGGAGAGTAGAACTCAGGTTGGTGAGCTTGATGGAGGGAAGGCGCGTTCAAAGAAACAAGGGAGGAAGAGGGAAACTGTGGATTTGAGGACCCTTTTGGTTCTTTGTGCACAAGCTGTGTCTGCTAATGACAATAGGACTGCTAATGAATTGTTGAGGCAGATTAGGAAGCATTCTTCTCCTTCAGGTGATGCATCACAGAGAATGGCTCATTACTTTGCAAATGCGATTGAAGCGCGCATGGTTGGTGCTGGTACCGGTACACAAATATTATATATGAGCCAAAAGATGTTTAGTGCTGCTGATTTCTTGAAAGCTTACCAAGTTTTTATCTCTGCTTGCCCTTTCAAAAAATTTGCACATTTCTTTGCAAATAAAATGATTTTGAAAACAGCTGAAAAGGCAGAAACCCTTCACATTATTGATTTTGGTATCTTATATGGTTTCCAGTGGCCAATTCTTATTAAGTTTTTGTCAAAAGTAGAGGGTGGACCGCCCAAGTTGAGGATCACAGGAATTGAGTATCCCCAAGCTGGCTTTCGACCGGCAGAGAGAATAGAGGAAACTGGCCGGCGTTTAGCTAACTATTGTGAACGTTTCAATGTTTCCTTCGAATACAAGGCCATACCATCCCGAAACTGGGAAACCATTCAAATTGAAGACCTTAATATTAAGAGCAATGAGGTAGTGGCTGTGAACTGTTTGGTAAGGTTTAAGAATTTACATGATGAGACAATCGACGTGAACAGTCCTAAAGATGCAGTTCTGAAGTTAATCAGGAAGATAAATCCGCGCATATTTGTTCAATCCATAGTAAATGGGTCTTATAATGCCCCTTTCTTTTCCACACGCTTCAAGGAGTCACTTTTCCATTATTCTGCAATGTTTGATATGTATGATACTCTCATATCCCGTGAAAATGAATGGAGGTCGATGATTGAGAGAGAGTTTTTGGGCCGGGAGATTATGAATGTTGTAGCATGTGAAGGTTTTGAGAGGGTTGAGAGGCCCGAGACATACAAACAGTGGCAGGTTAGGAATCTAAGGGCTGGCTTTAGGCAACTCCCACTGGATAAGGAGGTAATGGCCAGATTTAGAGATAGGCTAAGAGAATGGTACCATAAAGATTTTGTCTTTGATGAAGATAACAACTGGATGCTTCAAGGTTGGAAAGGCCGAATTACGTATGCTTCGGCTGGTTGGGTGCCAGCATAA
Protein sequence

>MS.gene45520.t1

MDPNFVGFETTYKFDDHGNLILLSDPNPNLNDFTMTNPYVGPSNSEPLVFSSDATKDSTFEDADFSETVKYISQILMEEDFEQKPCMCYDPLSLQHTEKIFFDALESNLSLSPNQHPLDVLEIPSSNCCVPTDSGNSSSSNELKPLSPDTPVSGGDSAFNSAKSQFIVPNHSLNLSNSNISDGVFDLDSSETRVMAQNIFSDADSILQFRKGLEEASKFLPQKAQLFTGFENASDSLVSHEPKGRVGVIKMEGGVRENSNSSYSSSNLNSGYSSSNSNSNGLLKSRKNHERQESDDEEGRSNKQSAVSVEESEISDMFDRVLLSVENVPLCAEQKDGSVVESRTQVGELDGGKARSKKQGRKRETVDLRTLLVLCAQAVSANDNRTANELLRQIRKHSSPSGDASQRMAHYFANAIEARMVGAGTGTQILYMSQKMFSAADFLKAYQVFISACPFKKFAHFFANKMILKTAEKAETLHIIDFGILYGFQWPILIKFLSKVEGGPPKLRITGIEYPQAGFRPAERIEETGRRLANYCERFNVSFEYKAIPSRNWETIQIEDLNIKSNEVVAVNCLVRFKNLHDETIDVNSPKDAVLKLIRKINPRIFVQSIVNGSYNAPFFSTRFKESLFHYSAMFDMYDTLISRENEWRSMIEREFLGREIMNVVACEGFERVERPETYKQWQVRNLRAGFRQLPLDKEVMARFRDRLREWYHKDFVFDEDNNWMLQGWKGRITYASAGWVPA