AlfalfaGEDB | MS.gene45574

M. sativa cultivar XinJiangDaYe / MS.gene45574

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45574.t1	XP_024632961.1	59.6	690	35	2	277	722	47	736	4.80E-210	741.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45574.t1	Q9SZL8	29.9	311	201	5	280	590	72	365	5.2e-35	151.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45574.t1	D3YBB9	52.1	685	95	2	271	722	73	757	2.4e-179	638.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene45574.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45574.t1	MTR_0558s0020	89.706	272	28	0	270	541	25	296	0.0	517
MS.gene45574.t1	MTR_1g083640	91.093	247	22	0	270	516	40	286	1.17e-166	480
MS.gene45574.t1	MTR_6g090505	67.680	362	70	2	311	625	1	362	1.78e-163	475
MS.gene45574.t1	MTR_8g446020	75.000	272	29	1	270	541	24	256	3.60e-140	412
MS.gene45574.t1	MTR_2g014100	87.324	213	27	0	270	482	33	245	4.81e-133	393
MS.gene45574.t1	MTR_0337s0040	70.954	241	31	1	270	510	25	226	5.85e-113	340
MS.gene45574.t1	MTR_3g008240	86.592	179	24	0	270	448	25	203	8.86e-108	326
MS.gene45574.t1	MTR_4g040430	85.475	179	22	1	270	448	24	198	1.55e-104	318
MS.gene45574.t1	MTR_0019s0290	86.275	153	18	1	330	479	8	160	1.03e-88	275
MS.gene45574.t1	MTR_1g055240	88.811	143	16	0	336	478	2	144	8.63e-87	270

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45574.t1	AT4G38180	30.094	319	192	7	280	591	72	366	3.31e-36	146
MS.gene45574.t1	AT5G28530	27.760	317	199	6	286	590	60	358	4.70e-27	117
MS.gene45574.t1	AT5G28530	27.760	317	199	6	286	590	60	358	4.93e-27	117
MS.gene45574.t1	AT5G28530	27.760	317	199	6	286	590	60	358	4.93e-27	117
MS.gene45574.t1	AT3G06250	26.724	348	181	11	280	620	189	469	3.12e-26	115
MS.gene45574.t1	AT3G06250	26.724	348	181	11	280	620	189	469	3.12e-26	115
MS.gene45574.t1	AT3G06250	26.724	348	181	11	280	620	189	469	3.12e-26	115
MS.gene45574.t1	AT2G27110	35.766	137	88	0	457	593	179	315	2.26e-25	112
MS.gene45574.t1	AT2G27110	35.766	137	88	0	457	593	179	315	2.26e-25	112
MS.gene45574.t1	AT2G27110	35.766	137	88	0	457	593	34	170	2.71e-25	112

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Find 0 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACCCCATGAAAACAAA+TGG	+	23426:4385-4404	None:intergenic	30.0%
AAAACACCTGGAAAACTATT+CGG	+	23426:4982-5001	None:intergenic	30.0%
AAAATGCAGTATGAATTTGC+TGG	+	23426:2900-2919	None:intergenic	30.0%
AACAAACAAGGTTTCAAGAA+GGG	-	23426:3542-3561	MS.gene45574:intron	30.0%
AACTCAAAAGAAATGGATAC+AGG	+	23426:2156-2175	None:intergenic	30.0%
AAGAATATATATCGGCCATT+AGG	-	23426:4142-4161	MS.gene45574:CDS	30.0%
AATTGAACTTTCCTCTTATC+TGG	+	23426:2417-2436	None:intergenic	30.0%
ACTACTACAGATGAAATTCT+GGG	-	23426:2390-2409	MS.gene45574:intron	30.0%
AGAACGTCTAATGAAGTTAT+GGG	-	23426:3845-3864	MS.gene45574:CDS	30.0%
AGCTCATATGAATAACAAAC+AGG	-	23426:1900-1919	MS.gene45574:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
23426	gene	1838	6055	1838	ID=MS.gene45574
23426	mRNA	1838	6055	1838	ID=MS.gene45574.t1;Parent=MS.gene45574
23426	exon	5436	6055	5436	ID=MS.gene45574.t1.exon1;Parent=MS.gene45574.t1
23426	CDS	5436	6055	5436	ID=cds.MS.gene45574.t1;Parent=MS.gene45574.t1
23426	exon	5128	5254	5128	ID=MS.gene45574.t1.exon2;Parent=MS.gene45574.t1
23426	CDS	5128	5254	5128	ID=cds.MS.gene45574.t1;Parent=MS.gene45574.t1
23426	exon	4968	5050	4968	ID=MS.gene45574.t1.exon3;Parent=MS.gene45574.t1
23426	CDS	4968	5050	4968	ID=cds.MS.gene45574.t1;Parent=MS.gene45574.t1
23426	exon	3730	4520	3730	ID=MS.gene45574.t1.exon4;Parent=MS.gene45574.t1
23426	CDS	3730	4520	3730	ID=cds.MS.gene45574.t1;Parent=MS.gene45574.t1
23426	exon	2935	3090	2935	ID=MS.gene45574.t1.exon5;Parent=MS.gene45574.t1
23426	CDS	2935	3090	2935	ID=cds.MS.gene45574.t1;Parent=MS.gene45574.t1
23426	exon	1838	2232	1838	ID=MS.gene45574.t1.exon6;Parent=MS.gene45574.t1
23426	CDS	1838	2232	1838	ID=cds.MS.gene45574.t1;Parent=MS.gene45574.t1

Gene Sequence

>MS.gene45574

ATGAGGCAACCTGCTAAAATTTCTAAAAAAGCTCACAATGTGGACACCAAAGCTCATTCTAAAGCTCATATGAATAACAAACAGGTTGAGGAAGCTATTGTTCACAACATTGCTCAATCTGGAAATGAGGCAGTTGGTAAAAAATCTGCTAAAAATCAAGCTCAATCTAACAATATGGATCCTTTGAATAACTCTGACACTGTTGTGGAAGGTGGTGAGGACCTATTTGTTAAAGTGACCAAAAAGACTGATAACACTAGTTTTGCAAGCTCTGCTATTGTGACAAACCAGAAGGCTGGGAATCCAACAAAACTACCTGTATCCATTTCTTTTGAGTTGTTTGAGAATGATAGTGAGCTTTTTTCAGGGGAGGCTAGGCCAGCTGACATGGAAATTACTCACATTACAGTTGATAAGGTGATGCCTATCAGTCTAAATGTGGAGGACACTTCCCTAGAGAGGGAACACTTGTCTCCTCCTCCATTCTTAGAGGTTCCTAGGGATCCTAATTTTGATGAGTACTTAGTCTTGCAGCCTAGCATCACTCCTATCACTACTACAGATGAAATTCTGGGCCCAGATAAGAGGAAAGTTCAATTCATTGAAGGCACTAAGAATGTGTCAGCTGCAAGCTTAAAAAGTACAAAAATCTTGAGCAAATTTTGGGGAGATGTGATGGACACTGATGCTTCTGATGGCAAAATTTATGGTGCATAAGCCATAATTTATGCACCATGCATAAGTTAATCACAACCATCAGATAACAGGACACTTGTAATGATCCTATGGTTCTCAACTCAGACCCCCACAATCTTTCTCCGTTTTCGCGAAACTGCTATCTTTCTCCATTTTCGCGACTACATTCTTTGCTACGATTTCCGACGTGGTTTTCCGGCTTCGTAACGGTGTGATTGCGCCGATTTCACCGGTGAACCTTGCTTCACGTTTGCTCACCGCTCCGACGTCGTTTTCCAGTCATGATTGCGACGTGATTTCATCGTCTAGGTTGCACGAATTTCACCCTTTCTCACCGGTCCGACACCGTTTTTCCAGCTATCTCCAGCAAATTCATACTGCATTTTAAAGAGGTAATCATGTATACCATTTTTGTTGTATTTAGTTTTTGATTCAAATTTCGAATTTAGGTTTTGATTCAAATTTCGAATTTGTTCTTAGTATAGTATCAATTTAGTGATTTGGTTGTAGCAATAAGCTTCATTTTTCGATTTGTATAAGAATCAATTTTGCTTCAATTGTATTTTCAAATCAACACTCTGAAACCATTTACACAGTATATTGGTTTTGGCATATTAGCTTCAATTTTGCTTCAGTTGTAGTTTCGATTTATGATATCTAATGGTTGTTTGTTCTTAATAGTGTTCGTTGCTGTTTTCAATGGATTTGATATCAACTTCATCTGAGAGTTGACAACTGAGTGTTGAAACTTCATCACTGATTCATGCTGAGAGTGGACAACTGAGTGTTGAAACTTCTTCAATGATTCATGTTGATAGTTCTCAATGTTACTCCCCTAGCAATGAAGAATCATGGAAGTCTTTAATCTTTCATTCTATTAAAGAGATTGAAGATTTTTATGGTAACTATGCATATAACACTGGATTTTCTATTAGGACTATGTTGAAGTCGAAGAATAATTCACAAAATAAGAAATCTGATAAGGTACACTATGTGCGTTATGTTTGTAACAAACAAGGTTTCAAGAAGGGAAGTTTGCTTAATCCTAACAACAAGACAACATCAGACAGTCCATTGGTTATTGAGTTTGTGAAAGTGAAAGAAAAACCTAAGGAAAGGGTTGGTTGTAAAGCTGGAATATCTTTGAAGTTGGATGAAGTTTTGAATGTGTATAAGATATATAGATGGGATGTGGCTCACTGTCATCCATTACATAAACCAAATCATTCGTGTTACCTTAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTAGCTCTTATAAATTCTAAAGCTGGAATGTCGATGAGAACGTCTAATGAAGTTATGGGTCAAGGAGTTGGAGGCACGAAGAATCTTCCTTTTCGGTTTTCAGGCTTAAAGAACTATCTAATGACAATTCGTCAAAAAGAGATGGTGGTTGGTGAAGCAACTATAATTCAAGAATTCTTTAGAAATGAAGCTCTCTCGAAACCATCTTTTTACTATGATATCCAAGTTGATGCTGCAGAAGACATAGCTAGTATTTTTTGGGTAGATGGAATTATGCAACTAGATTATTCTCTATTCGGCGATGTCATCAGTTTTGATACAACTTATCGAACAAAGAATATATATCGGCCATTAGGTTAGTGTTTTTTACTTCTCTTTTGTTTTAAATTAGTGTTTACTTTCATTTTGTTCTGGCATGTTGTAAATTTTTGTTCTGCATGTTGCATTTTTGTTCTGGCATGTGTATTATAAGTAGGAGTACATTTTGAACTGCCTAGGTTTGACTATAGTTCTTACTTATTTAAACTACAGGGGTTTAACCATGCTGTTTGTTTAGGGATTTTCTCGCTTCTGCCATTTGTTTTCATGGGGTTTTTGTCGATTCCAGATATCAAACCTGAAAGATGGTTTGAGACAAACTTAAATGATGTTGATTGGAATTTATATTTTGAACTACCTAGGCATTTGTACTTAGACAAACCTGAAAATGTCTTGTGTGATCGAACTTTAGTACATACTTATTAGAATACTTAGTGTATATGTGTGTTTTATCATTGAGTTTACGCATTGTTGAGGCGTGATTTCTTATAACTTGCGATTACAGACCACTAAGGGTTGGATTGGACTTAAATTAGTGATTGATTTCATTATTTATTGTAAGTTATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTATTTTGTTCTAATATAGGTAATTTAAATTTCAGCTGCCTTTATTGGTTTTGACAATCATCGTAAGAGTGTTTTATTTGGTGTTGCGCTATTGTACGATGAGATAACAACTACTTTTGATTGGTTGTTTAAAACATTCTTGAAGTGTATGTCCAATAAGAAACCACAGACGATATATACAGACCAGGCTAGTGCGTTATTGTGTTCAATTCCGAATAGTTTTCCAGGTGTTTTTCATGGGCTTTGTTCATGGCACATGGCAGAGAATGCAAAGAAAAATCTTGGCTCTCGTGCAAACAATGCATTTTTTGATGAGTTAACTAATTTGGTTTCAAATGTAGACGATGAATCAGATTTTGACTATAATTGGGATCAGATGATGAAAAATTGTTTTAATGGAAGGCCAACTTCAGACTTTAGCTTGCTTGTCTAAACTTACGGAAATCGTATGCATTGGTCTTCAGCTTGGGTCAAGTCACATTTTACAGCTGGTCTGAAAACGACTCAGTTAAGTGAGTCTTTCAATGCTTTTCTTCATGGATTTCTGCAGCCAGACCATTCACTTGTTCGATTCTTTAGTCATCTCAACATTATGGTTCAGAGAATGAGGGATAATCATGCTGAGTTGGACTTCAAGGCTACAAACACTAGAACAAAAAATAATTATCCCAACAGGCAGCTGATGCGGTCCGTTGTAAACAAGTACACACCAGCTTGCTTTGCATTTATTCATAGGGAGTATGACCTTTCCTTCAAATACTATTATGAGGAGGACATAACAAAAGGGTCTGCCTTGGAGAAGTTTTTCAAAGTTTTCACAATTGAAAAGCTTGATGATAATTATGATGATGCTGATAATGACGGGCCTTCCACTGTTGATGTTTTGGATGCAGAACTTCAAGAAAACCTTTTCCCAAGTTTTGAAGATCATGATCGACTTGATGAAAGGGTTGTCGCAGTTGACATTAGAAGCAAAAGTTTTAGTTGTTCATGTCATATGTTTGAAAACAGGGGTTCCTTATGTCGACATGTTTTGAAGATCTTGGAGTTCCTAGGTGGTCATGTGCAATATAATTTTTTGAAGACAATACCTAGACAATATGTTATAAAACGTTGGACTAGAGATGTGCGTCCGTCTGTCGATAAGCTGAAATCGACCATCCATGTTGGCACTGAAGACACCACTCAAGCACAACGATATCAACAAATTTGTGCTGTTACAGTTCAGCTTTCTACACGTTTTTGTGCAGATCCGGAGGCATCTAAAATTTTTCTACATGGTTCTTGA

Protein sequence

>MS.gene45574.t1

MRQPAKISKKAHNVDTKAHSKAHMNNKQVEEAIVHNIAQSGNEAVGKKSAKNQAQSNNMDPLNNSDTVVEGGEDLFVKVTKKTDNTSFASSAIVTNQKAGNPTKLPVSISFELFENDSELFSGEARPADMEITHITVDKVMPISLNVEDTSLEREHLSPPPFLEVPRDPNFDEYLVLQPSITPITTTDEILGPDKRKVQFIEGTKNVPPQSFSVFAKLLSFSIFATTFFATISDVVFRLRNGVIAPISPVARISPFLTGPTPFFQLSPANSYCILKSNEESWKSLIFHSIKEIEDFYGNYAYNTGFSIRTMLKSKNNSQNKKSDKVHYVRYVCNKQGFKKGSLLNPNNKTTSDSPLVIEFVKVKEKPKERVGCKAGISLKLDEVLNVYKIYRWDVAHCHPLHKPNHSCYLRSFREVNEVQGQLALINSKAGMSMRTSNEVMGQGVGGTKNLPFRFSGLKNYLMTIRQKEMVVGEATIIQEFFRNEALSKPSFYYDIQVDAAEDIASIFWVDGIMQLDYSLFGDVISFDTTYRTKNIYRPLAAFIGFDNHRKSVLFGVALLYDEITTTFDWLFKTFLKCMSNKKPQTIYTDQAKLQENLFPSFEDHDRLDERVVAVDIRSKSFSCSCHMFENRGSLCRHVLKILEFLGGHVQYNFLKTIPRQYVIKRWTRDVRPSVDKLKSTIHVGTEDTTQAQRYQQICAVTVQLSTRFCADPEASKIFLHGS