AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45632

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45632.t1 MTR_4g097920 86.207 319 37 4 1 318 1 313 0.0 548
MS.gene45632.t1 MTR_4g097920 86.207 319 37 4 1 318 16 328 0.0 548
MS.gene45632.t1 MTR_4g097940 85.893 319 38 4 1 318 16 328 0.0 546
MS.gene45632.t1 MTR_5g014640 49.281 278 120 7 56 314 47 322 6.92e-74 231
MS.gene45632.t1 MTR_4g092700 38.226 327 162 11 18 318 21 333 1.93e-56 186
MS.gene45632.t1 MTR_2g010450 50.505 198 86 4 117 310 156 345 4.85e-54 180
MS.gene45632.t1 MTR_8g009020 47.872 188 85 4 138 314 136 321 1.62e-51 173
MS.gene45632.t1 MTR_5g014600 49.468 188 78 4 143 314 147 333 1.15e-50 171
MS.gene45632.t1 MTR_0011s0210 50.292 171 81 2 143 310 181 350 4.11e-50 170
MS.gene45632.t1 MTR_6g047570 37.500 288 152 6 27 310 63 326 6.11e-50 169
MS.gene45632.t1 MTR_0250s0040 47.093 172 87 3 142 310 85 255 1.82e-49 166
MS.gene45632.t1 MTR_0011s0260 50.292 171 81 2 143 310 181 350 4.38e-49 167
MS.gene45632.t1 MTR_5g014520 44.690 226 118 4 90 310 101 324 4.38e-49 167
MS.gene45632.t1 MTR_2g104550 48.677 189 90 3 131 314 124 310 7.54e-48 163
MS.gene45632.t1 MTR_0246s0020 42.169 249 109 9 75 310 143 369 2.07e-47 164
MS.gene45632.t1 MTR_4g067010 44.019 209 98 5 113 318 127 319 1.06e-46 160
MS.gene45632.t1 MTR_4g066460 42.995 207 109 4 113 314 121 323 2.82e-45 157
MS.gene45632.t1 MTR_5g014560 47.753 178 88 3 144 317 130 306 3.10e-45 156
MS.gene45632.t1 MTR_4g009540 44.388 196 98 5 128 314 136 329 4.19e-43 151
MS.gene45632.t1 MTR_0246s0020 41.880 234 101 9 75 295 143 354 1.03e-41 148
MS.gene45632.t1 MTR_4g009110 45.109 184 94 3 137 314 166 348 1.66e-41 147
MS.gene45632.t1 MTR_0246s0050 42.077 183 101 2 128 310 134 311 1.69e-41 147
MS.gene45632.t1 MTR_4g097950 41.176 255 119 8 84 317 7 251 2.19e-41 144
MS.gene45632.t1 MTR_4g098035 42.077 183 101 2 128 310 155 332 3.12e-41 146
MS.gene45632.t1 MTR_4g066380 41.232 211 114 5 113 318 119 324 9.92e-40 142
MS.gene45632.t1 MTR_2g104490 44.324 185 101 2 131 314 123 306 1.38e-39 141
MS.gene45632.t1 MTR_8g009010 40.678 177 70 3 138 313 127 269 6.23e-37 134
MS.gene45632.t1 MTR_4g009540 43.503 177 89 5 128 295 136 310 3.59e-36 132
MS.gene45632.t1 MTR_2g104560 39.037 187 100 5 138 317 47 226 7.64e-36 129
MS.gene45632.t1 MTR_7g080780 44.134 179 93 2 136 314 143 314 2.42e-35 130
MS.gene45632.t1 MTR_7g080780 44.693 179 92 2 136 314 156 327 2.74e-35 130
MS.gene45632.t1 MTR_2g104590 37.912 182 85 3 138 313 62 221 3.00e-35 128
MS.gene45632.t1 MTR_2g104490 43.275 171 95 2 131 300 123 292 2.95e-33 124
MS.gene45632.t1 MTR_8g069740 41.818 165 84 5 138 294 105 265 1.42e-32 122
MS.gene45632.t1 MTR_2g104650 42.623 183 95 5 138 313 87 266 7.29e-32 120
MS.gene45632.t1 MTR_2g104500 41.111 180 91 5 141 314 100 270 7.26e-31 117
MS.gene45632.t1 MTR_2g104530 37.019 208 111 5 114 314 78 272 2.76e-30 116
MS.gene45632.t1 MTR_7g451650 41.216 148 65 5 170 310 59 191 4.55e-22 92.0
MS.gene45632.t1 MTR_6g047550 56.944 72 31 0 141 212 169 240 1.52e-21 92.4
MS.gene45632.t1 MTR_5g014550 39.370 127 73 2 175 298 54 179 1.67e-21 90.5
MS.gene45632.t1 MTR_4g009510 36.875 160 91 6 156 314 53 203 6.09e-21 89.4
MS.gene45632.t1 MTR_4g009420 35.625 160 76 4 156 310 54 191 2.84e-20 87.4
MS.gene45632.t1 MTR_7g050350 38.028 142 70 4 174 310 1 129 1.15e-19 84.0
MS.gene45632.t1 MTR_7g451650 38.028 142 70 4 174 310 1 129 1.15e-19 84.0
MS.gene45632.t1 MTR_7g451650 40.000 135 63 4 170 299 59 180 1.83e-19 84.7
MS.gene45632.t1 MTR_4g009420 39.231 130 63 3 170 299 67 180 1.41e-17 80.1
MS.gene45632.t1 MTR_8g024790 28.333 180 111 6 145 312 291 464 1.22e-15 77.4
MS.gene45632.t1 MTR_1g072320 34.459 148 80 4 145 277 470 615 9.47e-15 75.1
MS.gene45632.t1 MTR_8g027495 33.898 118 61 2 141 252 454 560 4.32e-14 73.2
MS.gene45632.t1 MTR_5g030430 32.258 155 73 7 145 274 493 640 2.27e-13 71.2
MS.gene45632.t1 MTR_7g096350 48.571 70 33 1 129 198 342 408 3.36e-13 70.5
MS.gene45632.t1 MTR_8g064700 30.058 173 111 4 128 292 228 398 8.66e-13 68.9
MS.gene45632.t1 MTR_8g024770 31.034 116 69 2 145 251 279 392 9.54e-13 68.9
MS.gene45632.t1 MTR_8g067280 34.677 124 67 3 145 254 462 585 1.32e-12 68.6
MS.gene45632.t1 MTR_7g117670 51.786 56 27 0 145 200 402 457 1.92e-12 68.2
MS.gene45632.t1 MTR_8g098275 41.791 67 39 0 142 208 305 371 8.19e-12 66.2
MS.gene45632.t1 MTR_8g098275 41.791 67 39 0 142 208 398 464 9.02e-12 66.2
MS.gene45632.t1 MTR_8g098275 41.791 67 39 0 142 208 241 307 9.21e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45632.t1 AT4G37850 43.426 251 114 7 87 318 87 328 6.45e-54 179
MS.gene45632.t1 AT4G37850 43.426 251 114 7 87 318 87 328 6.45e-54 179
MS.gene45632.t1 AT2G22760 51.667 180 79 5 138 310 112 290 2.86e-53 176
MS.gene45632.t1 AT2G22770 46.396 222 97 5 114 314 98 318 5.92e-48 164
MS.gene45632.t1 AT2G22760 51.829 164 72 4 138 295 112 274 9.08e-48 162
MS.gene45632.t1 AT2G22750 43.825 251 108 9 88 317 66 304 4.76e-46 158
MS.gene45632.t1 AT2G22750 43.825 251 108 9 88 317 90 328 7.28e-46 158
MS.gene45632.t1 AT2G22750 43.825 251 108 9 88 317 94 332 8.11e-46 158
MS.gene45632.t1 AT2G22750 43.825 251 107 10 88 317 66 303 1.50e-44 154
MS.gene45632.t1 AT2G22750 43.825 251 107 10 88 317 94 331 1.77e-44 155
MS.gene45632.t1 AT1G32640 36.691 139 78 6 145 274 452 589 1.09e-15 78.2
MS.gene45632.t1 AT2G46510 47.561 82 40 1 119 200 372 450 4.81e-15 76.3
MS.gene45632.t1 AT1G01260 26.556 241 142 7 12 252 316 521 5.78e-14 72.8
MS.gene45632.t1 AT1G01260 26.556 241 142 7 12 252 316 521 5.78e-14 72.8
MS.gene45632.t1 AT1G01260 26.556 241 142 7 12 252 316 521 5.78e-14 72.8
MS.gene45632.t1 AT4G17880 35.294 119 62 3 145 254 416 528 3.02e-12 67.8
MS.gene45632.t1 AT5G46760 34.188 117 70 2 145 254 415 531 3.77e-12 67.4
MS.gene45632.t1 AT4G16430 42.045 88 46 2 126 208 297 384 4.00e-12 67.0
MS.gene45632.t1 AT1G63650 35.955 89 56 1 140 227 400 488 4.80e-12 67.0
MS.gene45632.t1 AT1G63650 35.955 89 56 1 140 227 400 488 4.80e-12 67.0
MS.gene45632.t1 AT1G63650 35.955 89 56 1 140 227 400 488 4.80e-12 67.0
MS.gene45632.t1 AT4G09820 50.820 61 30 0 138 198 356 416 1.25e-11 65.9
MS.gene45632.t1 AT3G26744 31.447 159 91 6 146 289 308 463 2.99e-11 64.3
MS.gene45632.t1 AT3G26744 31.447 159 91 6 146 289 308 463 3.64e-11 64.3
MS.gene45632.t1 AT3G26744 31.447 159 91 6 146 289 308 463 3.64e-11 64.3
MS.gene45632.t1 AT3G26744 31.447 159 91 6 146 289 308 463 3.64e-11 64.3
MS.gene45632.t1 AT1G12860 29.518 166 101 6 146 299 268 429 6.15e-11 63.5
MS.gene45632.t1 AT1G12860 30.769 156 92 6 146 289 268 419 7.03e-11 63.2
MS.gene45632.t1 AT2G16910 50.000 56 28 0 146 201 315 370 8.58e-11 63.2
MS.gene45632.t1 AT5G57150 31.395 172 88 9 143 291 53 217 9.98e-11 61.2

Find 53 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTGAAGCAAGGGTTTC+TGG 0.149381 8.2:+24227951 MS.gene45632:CDS
GATGGACAAGGCAACTATTT+TGG 0.186609 8.2:+24227764 MS.gene45632:intron
TGCATTCCAGTTTGATGATA+TGG 0.223416 8.2:+24227126 MS.gene45632:CDS
GCTCTTTCATCTCTTCTTCC+TGG 0.251328 8.2:+24227562 MS.gene45632:CDS
TTCACCTTTGCATCCATGTT+TGG 0.279378 8.2:-24227361 None:intergenic
TCTTCTTCCTGGACTCAAAA+AGG 0.317343 8.2:+24227573 MS.gene45632:CDS
AGAATTGTTCTGTGTGCTTT+CGG 0.323320 8.2:-24227233 None:intergenic
AGAATATTGCTTGACAATAA+AGG 0.327738 8.2:+24228513 MS.gene45632:CDS
TATGGAGAAAACTTGAATTT+CGG 0.349571 8.2:+24227406 MS.gene45632:CDS
TGTAAATAGAAACCCTATTC+AGG 0.354615 8.2:+24227480 MS.gene45632:CDS
AGCAGTTCTACTTTGCCATT+TGG 0.363549 8.2:+24228071 MS.gene45632:CDS
ACATGATCTTGAGCCTGAAT+AGG 0.366395 8.2:-24227493 None:intergenic
CATGATCTTGAGCCTGAATA+GGG 0.371001 8.2:-24227492 None:intergenic
TCGCTTGTTGTTGATGTTGT+TGG 0.394714 8.2:-24227203 None:intergenic
TGATATAACAATTGTTGCTC+AGG 0.416686 8.2:+24228106 MS.gene45632:CDS
AGTATGCCATATCATCAAAC+TGG 0.434714 8.2:-24227132 None:intergenic
TTGACCAGGACTACTTTCAA+TGG 0.436916 8.2:-24227260 None:intergenic
ATGAAAGAGCAATGAATCTC+TGG 0.443321 8.2:-24227549 None:intergenic
TGACCAGGACTACTTTCAAT+GGG 0.452873 8.2:-24227259 None:intergenic
TGAGTATTGCGGTCGCAGTT+CGG 0.460089 8.2:-24228016 None:intergenic
CAGCAGCAACCTTGTTCTCT+CGG 0.463262 8.2:-24227459 None:intergenic
TTCCCCATTGAAAGTAGTCC+TGG 0.464737 8.2:+24227256 MS.gene45632:CDS
TCAAGATAGTTATTTCCAAA+TGG 0.471769 8.2:-24228086 None:intergenic
AAGAAGCCTAAAACTGAGAT+CGG 0.487088 8.2:+24227382 MS.gene45632:CDS
AGGAATAAGCACTCTCTTGT+GGG 0.487844 8.2:-24227174 None:intergenic
CCTAAAACTGAGATCGGGTA+TGG 0.488086 8.2:+24227388 MS.gene45632:CDS
TGGAATGCATATGAATCCAT+TGG 0.489021 8.2:-24227112 None:intergenic
GGAACGAGTGAAGACTTTAG+AGG 0.491147 8.2:+24227818 MS.gene45632:CDS
TGGTTCAAAAGAAATGATCT+TGG 0.499628 8.2:-24227341 None:intergenic
GAGGAATAAGCACTCTCTTG+TGG 0.504775 8.2:-24227175 None:intergenic
TCAGGCTCAAGATCATGTTA+TGG 0.510343 8.2:+24227498 MS.gene45632:CDS
ACTTCCGAAAATTGAAGCAA+GGG 0.522336 8.2:+24227944 MS.gene45632:CDS
TCTCGTAAGGAGCATAAGTC+AGG 0.525482 8.2:+24228537 MS.gene45632:CDS
CACTTCCGAAAATTGAAGCA+AGG 0.531807 8.2:+24227943 MS.gene45632:CDS
TGTTCTGTGTGCTTTCGGAA+TGG 0.533620 8.2:-24227228 None:intergenic
GTTGATGTTGTTGGTATGAG+AGG 0.543066 8.2:-24227194 None:intergenic
AGAAGCCTAAAACTGAGATC+GGG 0.557163 8.2:+24227383 MS.gene45632:CDS
TGAACCAAACATGGATGCAA+AGG 0.563886 8.2:+24227357 MS.gene45632:CDS
AAAACATATGAAGCAACTAC+AGG 0.565504 8.2:+24227797 MS.gene45632:CDS
ATCCATTGTGACAAATATTG+TGG 0.568305 8.2:+24227993 MS.gene45632:CDS
TTCGGAAGTGTGATATCTCA+AGG 0.572553 8.2:+24227424 MS.gene45632:CDS
TTCTAATTCGATGAGTATTG+CGG 0.578276 8.2:-24228027 None:intergenic
GGCCACAATATTTGTCACAA+TGG 0.583000 8.2:-24227995 None:intergenic
TAGTGATCATGAATATCCAA+TGG 0.584018 8.2:+24227096 MS.gene45632:CDS
TGACAATAAAGGATCTCGTA+AGG 0.599743 8.2:+24228524 MS.gene45632:CDS
TTATTATAACCGAGAGAACA+AGG 0.606925 8.2:+24227450 MS.gene45632:CDS
ACTTTGCATGCAGATGGACA+AGG 0.646531 8.2:+24227752 MS.gene45632:intron
TATGGCAGAAAGAAGACGAA+GGG 0.657033 8.2:+24227516 MS.gene45632:CDS
GGAATAAGCACTCTCTTGTG+GGG 0.658683 8.2:-24227173 None:intergenic
GCTGAAGCAACAGATTGACC+AGG 0.668418 8.2:-24227274 None:intergenic
TTATGGCAGAAAGAAGACGA+AGG 0.702887 8.2:+24227515 MS.gene45632:CDS
GACCAGGACTACTTTCAATG+GGG 0.715740 8.2:-24227258 None:intergenic
TAGAACTGCTCTGAACAGTG+AGG 0.757817 8.2:-24228058 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTTAAAAATTTTAAGT+TGG - chr8.2:24228256-24228275 None:intergenic 10.0%
!!! ATTTTAATTAGGTTTTAAGT+TGG - chr8.2:24228284-24228303 None:intergenic 15.0%
!!! CAGATTTTATTTAATTTTCA+TGG + chr8.2:24228460-24228479 MS.gene45632:intron 15.0%
!! TCATGTTGATATATTCTATT+TGG + chr8.2:24228366-24228385 MS.gene45632:intron 20.0%
!!! CTCTTATGATCATTTTAATT+AGG - chr8.2:24228295-24228314 None:intergenic 20.0%
!!! GTTTATTTTAAGTTTCTAGT+TGG + chr8.2:24228197-24228216 MS.gene45632:intron 20.0%
! AGAATATTGCTTGACAATAA+AGG + chr8.2:24228513-24228532 MS.gene45632:CDS 25.0%
! TATGGAGAAAACTTGAATTT+CGG + chr8.2:24227406-24227425 MS.gene45632:CDS 25.0%
! TGTTAGTATAGTTGCAATTT+AGG + chr8.2:24227671-24227690 MS.gene45632:intron 25.0%
!! GATATTATGGTTTTCAATTG+CGG - chr8.2:24227704-24227723 None:intergenic 25.0%
!! TAAGCCTCTATATTTTATCT+CGG + chr8.2:24228425-24228444 MS.gene45632:intron 25.0%
!! TCAAGATAGTTATTTCCAAA+TGG - chr8.2:24228089-24228108 None:intergenic 25.0%
!! TTTCAAAGTGAGTAATGTTT+TGG + chr8.2:24228229-24228248 MS.gene45632:intron 25.0%
!! TTTTCCGAGATAAAATATAG+AGG - chr8.2:24228432-24228451 None:intergenic 25.0%
AAAACATATGAAGCAACTAC+AGG + chr8.2:24227797-24227816 MS.gene45632:CDS 30.0%
AACTAGGCTAGAACATAAAA+TGG - chr8.2:24228319-24228338 None:intergenic 30.0%
ATCCATTGTGACAAATATTG+TGG + chr8.2:24227993-24228012 MS.gene45632:CDS 30.0%
CATGAACAAAGAATTCTACT+CGG - chr8.2:24228351-24228370 None:intergenic 30.0%
CTACTTGATAGAGGATATTA+TGG - chr8.2:24227717-24227736 None:intergenic 30.0%
TAGTGATCATGAATATCCAA+TGG + chr8.2:24227096-24227115 MS.gene45632:CDS 30.0%
TGATATAACAATTGTTGCTC+AGG + chr8.2:24228106-24228125 MS.gene45632:CDS 30.0%
TGGTTAATACTACTTGATAG+AGG - chr8.2:24227726-24227745 None:intergenic 30.0%
TGGTTCAAAAGAAATGATCT+TGG - chr8.2:24227344-24227363 None:intergenic 30.0%
TGTAAATAGAAACCCTATTC+AGG + chr8.2:24227480-24227499 MS.gene45632:CDS 30.0%
TTATTATAACCGAGAGAACA+AGG + chr8.2:24227450-24227469 MS.gene45632:CDS 30.0%
! CATTTCTTTTGAACCAAACA+TGG + chr8.2:24227348-24227367 MS.gene45632:CDS 30.0%
! TTCTAATTCGATGAGTATTG+CGG - chr8.2:24228030-24228049 None:intergenic 30.0%
!! TTACTCACTTTGAAACAAGT+TGG - chr8.2:24228224-24228243 None:intergenic 30.0%
!!! AGCTGATTCGACTTTTTTAT+TGG - chr8.2:24227853-24227872 None:intergenic 30.0%
AAAATTGAAGCAAGGGTTTC+TGG + chr8.2:24227951-24227970 MS.gene45632:CDS 35.0%
AAGAAGCCTAAAACTGAGAT+CGG + chr8.2:24227382-24227401 MS.gene45632:CDS 35.0%
ACTTCCGAAAATTGAAGCAA+GGG + chr8.2:24227944-24227963 MS.gene45632:CDS 35.0%
AGAATTGTTCTGTGTGCTTT+CGG - chr8.2:24227236-24227255 None:intergenic 35.0%
AGTATGCCATATCATCAAAC+TGG - chr8.2:24227135-24227154 None:intergenic 35.0%
ATGAAAGAGCAATGAATCTC+TGG - chr8.2:24227552-24227571 None:intergenic 35.0%
GCTTGTCTTAATTGCATGTT+TGG + chr8.2:24228162-24228181 MS.gene45632:intron 35.0%
TGACAATAAAGGATCTCGTA+AGG + chr8.2:24228524-24228543 MS.gene45632:CDS 35.0%
TGGAATGCATATGAATCCAT+TGG - chr8.2:24227115-24227134 None:intergenic 35.0%
! CTTCAATTTTCGGAAGTGAT+TGG - chr8.2:24227941-24227960 None:intergenic 35.0%
! GAAACCCTTGCTTCAATTTT+CGG - chr8.2:24227951-24227970 None:intergenic 35.0%
! TGCATTCCAGTTTGATGATA+TGG + chr8.2:24227126-24227145 MS.gene45632:CDS 35.0%
!!! ATTAGTACCTTTTTGAGTCC+AGG - chr8.2:24227583-24227602 None:intergenic 35.0%
!!! GACTTGAGTCTTAGTTTTGT+TGG - chr8.2:24227304-24227323 None:intergenic 35.0%
ACATGATCTTGAGCCTGAAT+AGG - chr8.2:24227496-24227515 None:intergenic 40.0%
AGAAGCCTAAAACTGAGATC+GGG + chr8.2:24227383-24227402 MS.gene45632:CDS 40.0%
AGCAGTTCTACTTTGCCATT+TGG + chr8.2:24228071-24228090 MS.gene45632:CDS 40.0%
AGGAATAAGCACTCTCTTGT+GGG - chr8.2:24227177-24227196 None:intergenic 40.0%
ATGTTCACTTTGCATGCAGA+TGG + chr8.2:24227746-24227765 MS.gene45632:intron 40.0%
CACTTCCGAAAATTGAAGCA+AGG + chr8.2:24227943-24227962 MS.gene45632:CDS 40.0%
CATGATCTTGAGCCTGAATA+GGG - chr8.2:24227495-24227514 None:intergenic 40.0%
GGCCACAATATTTGTCACAA+TGG - chr8.2:24227998-24228017 None:intergenic 40.0%
GTTGATGTTGTTGGTATGAG+AGG - chr8.2:24227197-24227216 None:intergenic 40.0%
TACTCGGCACAAGAAAAACT+AGG - chr8.2:24228335-24228354 None:intergenic 40.0%
TATGGCAGAAAGAAGACGAA+GGG + chr8.2:24227516-24227535 MS.gene45632:CDS 40.0%
TCAGGCTCAAGATCATGTTA+TGG + chr8.2:24227498-24227517 MS.gene45632:CDS 40.0%
TCTGCATGCAAAGTGAACAT+TGG - chr8.2:24227746-24227765 None:intergenic 40.0%
TCTTCTTCCTGGACTCAAAA+AGG + chr8.2:24227573-24227592 MS.gene45632:CDS 40.0%
TGAACCAAACATGGATGCAA+AGG + chr8.2:24227357-24227376 MS.gene45632:CDS 40.0%
TGACCAGGACTACTTTCAAT+GGG - chr8.2:24227262-24227281 None:intergenic 40.0%
TTATGGCAGAAAGAAGACGA+AGG + chr8.2:24227515-24227534 MS.gene45632:CDS 40.0%
TTCACCTTTGCATCCATGTT+TGG - chr8.2:24227364-24227383 None:intergenic 40.0%
TTGACCAGGACTACTTTCAA+TGG - chr8.2:24227263-24227282 None:intergenic 40.0%
! GATGGACAAGGCAACTATTT+TGG + chr8.2:24227764-24227783 MS.gene45632:intron 40.0%
! TTCGGAAGTGTGATATCTCA+AGG + chr8.2:24227424-24227443 MS.gene45632:CDS 40.0%
!! TCGCTTGTTGTTGATGTTGT+TGG - chr8.2:24227206-24227225 None:intergenic 40.0%
ACTTTGCATGCAGATGGACA+AGG + chr8.2:24227752-24227771 MS.gene45632:intron 45.0%
CCTAAAACTGAGATCGGGTA+TGG + chr8.2:24227388-24227407 MS.gene45632:CDS 45.0%
GACCAGGACTACTTTCAATG+GGG - chr8.2:24227261-24227280 None:intergenic 45.0%
GAGGAATAAGCACTCTCTTG+TGG - chr8.2:24227178-24227197 None:intergenic 45.0%
GCTCTTTCATCTCTTCTTCC+TGG + chr8.2:24227562-24227581 MS.gene45632:CDS 45.0%
GGAACGAGTGAAGACTTTAG+AGG + chr8.2:24227818-24227837 MS.gene45632:CDS 45.0%
GGAATAAGCACTCTCTTGTG+GGG - chr8.2:24227176-24227195 None:intergenic 45.0%
TGTTCTGTGTGCTTTCGGAA+TGG - chr8.2:24227231-24227250 None:intergenic 45.0%
TTCCCCATTGAAAGTAGTCC+TGG + chr8.2:24227256-24227275 MS.gene45632:CDS 45.0%
! CCATACCCGATCTCAGTTTT+AGG - chr8.2:24227391-24227410 None:intergenic 45.0%
! GGAGCATAAGTCAGGTTTTG+AGG + chr8.2:24228545-24228564 MS.gene45632:CDS 45.0%
! TAGAACTGCTCTGAACAGTG+AGG - chr8.2:24228061-24228080 None:intergenic 45.0%
! TCTCGTAAGGAGCATAAGTC+AGG + chr8.2:24228537-24228556 MS.gene45632:CDS 45.0%
CAGCAGCAACCTTGTTCTCT+CGG - chr8.2:24227462-24227481 None:intergenic 50.0%
GCTGAAGCAACAGATTGACC+AGG - chr8.2:24227277-24227296 None:intergenic 50.0%
! TGAGTATTGCGGTCGCAGTT+CGG - chr8.2:24228019-24228038 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 24227076 24228579 24227076 ID=MS.gene45632
chr8.2 mRNA 24227076 24228579 24227076 ID=MS.gene45632.t1;Parent=MS.gene45632
chr8.2 exon 24227076 24227594 24227076 ID=MS.gene45632.t1.exon1;Parent=MS.gene45632.t1
chr8.2 CDS 24227076 24227594 24227076 ID=cds.MS.gene45632.t1;Parent=MS.gene45632.t1
chr8.2 exon 24227765 24228127 24227765 ID=MS.gene45632.t1.exon2;Parent=MS.gene45632.t1
chr8.2 CDS 24227765 24228127 24227765 ID=cds.MS.gene45632.t1;Parent=MS.gene45632.t1
chr8.2 exon 24228505 24228579 24228505 ID=MS.gene45632.t1.exon3;Parent=MS.gene45632.t1
chr8.2 CDS 24228505 24228579 24228505 ID=cds.MS.gene45632.t1;Parent=MS.gene45632.t1
Gene Sequence

>MS.gene45632

ATGGAGGACAATACTTTGTTTAGTGATCATGAATATCCAATGGATTCATATGCATTCCAGTTTGATGATATGGCATACTTCAAGTCTTTCTCAGCATCCCCACAAGAGAGTGCTTATTCCTCTCATACCAACAACATCAACAACAAGCGAATCCATTCCGAAAGCACACAGAACAATTCTTTCCCCATTGAAAGTAGTCCTGGTCAATCTGTTGCTTCAGCTACACCAACAAAACTAAGACTCAAGTCTTCTTCATCTTCATCTTCCAAGATCATTTCTTTTGAACCAAACATGGATGCAAAGGTGAAGAAGCCTAAAACTGAGATCGGGTATGGAGAAAACTTGAATTTCGGAAGTGTGATATCTCAAGGTGATTATTATAACCGAGAGAACAAGGTTGCTGCTGTAAATAGAAACCCTATTCAGGCTCAAGATCATGTTATGGCAGAAAGAAGACGAAGGGAAAAGCTTAGCCAGAGATTCATTGCTCTTTCATCTCTTCTTCCTGGACTCAAAAAGGTACTAATATATTCTAATAAATCTCATGCACATAAATATGCGATCTTTAATGTTGAGAGAAATTACATGCAAATTATGTTAGTATAGTTGCAATTTAGGTCTGCTACCGCAATTGAAAACCATAATATCCTCTATCAAGTAGTATTAACCAATGTTCACTTTGCATGCAGATGGACAAGGCAACTATTTTGGAAGATGCTATAAAACATATGAAGCAACTACAGGAACGAGTGAAGACTTTAGAGGAACAAGTAACCAATAAAAAAGTCGAATCAGCTGTTTTTGTGAAGAGATCTATTCTCTTTGACGAAGATGATAGCTCATCTTGCGACGAAAATTCAGACCAATCACTTCCGAAAATTGAAGCAAGGGTTTCTGGAAAAGACATGCTCATCAGAATCCATTGTGACAAATATTGTGGCCGAACTGCGACCGCAATACTCATCGAATTAGAAAAGCATCACCTCACTGTTCAGAGCAGTTCTACTTTGCCATTTGGAAATAACTATCTTGATATAACAATTGTTGCTCAGGTAAATTTATTCAAATTTGAAGACATGAGTTTATGCTTGTCTTAATTGCATGTTTGGTTCGTTCTTGATGTTTATTTTAAGTTTCTAGTTGGTCCAACTTGTTTCAAAGTGAGTAATGTTTTGGACCAACTTAAAATTTTTAAAACTTAAAGACCAACTTAAAACCTAATTAAAATGATCATAAGAGACCATTTTATGTTCTAGCCTAGTTTTTCTTGTGCCGAGTAGAATTCTTTGTTCATGTTGATATATTCTATTTGGCTCGTTAAAAAAAACATAAGAAATCAAACATACAATTAAGCCTCTATATTTTATCTCGGAAAAATTAGTGACAGATTTTATTTAATTTTCATGGCTAATTTAATTTTTTCTTGCAGATGAATAAAGAATATTGCTTGACAATAAAGGATCTCGTAAGGAGCATAAGTCAGGTTTTGAGGCAGCTCATTTGA
Protein sequence

>MS.gene45632.t1

MEDNTLFSDHEYPMDSYAFQFDDMAYFKSFSASPQESAYSSHTNNINNKRIHSESTQNNSFPIESSPGQSVASATPTKLRLKSSSSSSSKIISFEPNMDAKVKKPKTEIGYGENLNFGSVISQGDYYNRENKVAAVNRNPIQAQDHVMAERRRREKLSQRFIALSSLLPGLKKMDKATILEDAIKHMKQLQERVKTLEEQVTNKKVESAVFVKRSILFDEDDSSSCDENSDQSLPKIEARVSGKDMLIRIHCDKYCGRTATAILIELEKHHLTVQSSSTLPFGNNYLDITIVAQMNKEYCLTIKDLVRSISQVLRQLI