Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45638.t1 | XP_024629672.1 | 91.7 | 933 | 76 | 1 | 1 | 932 | 1 | 933 | 0.00E+00 | 1687.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45638.t1 | Q9SSE9 | 45.6 | 829 | 381 | 9 | 149 | 925 | 85 | 895 | 2.3e-197 | 690.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45638.t1 | G7IE64 | 91.7 | 932 | 76 | 1 | 1 | 931 | 1 | 932 | 0.0e+00 | 1686.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene45638.t1 | TR | Jumonji |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45638.t1 | MTR_1g114070 | 93.777 | 932 | 57 | 1 | 1 | 931 | 1 | 932 | 0.0 | 1732 |
MS.gene45638.t1 | MTR_1g114150 | 69.212 | 799 | 232 | 5 | 143 | 930 | 262 | 1057 | 0.0 | 1130 |
MS.gene45638.t1 | MTR_1g114150 | 49.693 | 163 | 60 | 5 | 42 | 195 | 7 | 156 | 3.05e-25 | 113 |
MS.gene45638.t1 | MTR_1g114130 | 67.488 | 812 | 245 | 7 | 135 | 930 | 237 | 1045 | 0.0 | 1104 |
MS.gene45638.t1 | MTR_1g114130 | 63.131 | 198 | 65 | 2 | 1 | 194 | 1 | 194 | 4.23e-58 | 217 |
MS.gene45638.t1 | MTR_1g069565 | 69.396 | 745 | 190 | 4 | 224 | 930 | 144 | 888 | 0.0 | 1056 |
MS.gene45638.t1 | MTR_5g065200 | 69.510 | 715 | 209 | 3 | 213 | 925 | 129 | 836 | 0.0 | 1011 |
MS.gene45638.t1 | MTR_1g069565 | 63.591 | 802 | 197 | 7 | 224 | 930 | 144 | 945 | 0.0 | 1004 |
MS.gene45638.t1 | MTR_1g114150 | 67.548 | 681 | 207 | 5 | 143 | 812 | 262 | 939 | 0.0 | 932 |
MS.gene45638.t1 | MTR_1g114150 | 49.693 | 163 | 60 | 5 | 42 | 195 | 7 | 156 | 3.95e-25 | 112 |
MS.gene45638.t1 | MTR_5g047620 | 63.118 | 667 | 209 | 8 | 288 | 924 | 139 | 798 | 0.0 | 838 |
MS.gene45638.t1 | MTR_0020s0100 | 60.413 | 629 | 221 | 10 | 288 | 906 | 81 | 691 | 0.0 | 754 |
MS.gene45638.t1 | MTR_2g024270 | 46.591 | 704 | 330 | 11 | 224 | 921 | 154 | 817 | 0.0 | 592 |
MS.gene45638.t1 | MTR_4g132540 | 43.649 | 740 | 332 | 15 | 224 | 921 | 168 | 864 | 0.0 | 588 |
MS.gene45638.t1 | MTR_2g024140 | 44.681 | 705 | 330 | 13 | 224 | 921 | 34 | 685 | 0.0 | 564 |
MS.gene45638.t1 | MTR_7g117445 | 43.214 | 641 | 330 | 12 | 139 | 752 | 43 | 676 | 6.31e-158 | 486 |
MS.gene45638.t1 | MTR_7g117445 | 65.591 | 93 | 32 | 0 | 770 | 862 | 773 | 865 | 3.80e-33 | 138 |
MS.gene45638.t1 | MTR_7g117445 | 43.214 | 641 | 330 | 12 | 139 | 752 | 43 | 676 | 1.75e-157 | 487 |
MS.gene45638.t1 | MTR_7g117445 | 59.627 | 161 | 65 | 0 | 770 | 930 | 773 | 933 | 1.77e-55 | 208 |
MS.gene45638.t1 | MTR_7g117445 | 43.214 | 641 | 330 | 12 | 139 | 752 | 43 | 676 | 1.83e-157 | 487 |
MS.gene45638.t1 | MTR_7g117445 | 61.438 | 153 | 59 | 0 | 770 | 922 | 773 | 925 | 4.91e-55 | 207 |
MS.gene45638.t1 | MTR_7g117445 | 43.214 | 641 | 330 | 12 | 139 | 752 | 43 | 676 | 6.58e-157 | 486 |
MS.gene45638.t1 | MTR_7g117445 | 61.438 | 153 | 59 | 0 | 770 | 922 | 773 | 925 | 5.94e-55 | 207 |
MS.gene45638.t1 | MTR_1g083120 | 35.358 | 741 | 391 | 12 | 224 | 922 | 198 | 892 | 1.69e-149 | 466 |
MS.gene45638.t1 | MTR_1g083120 | 35.358 | 741 | 391 | 12 | 224 | 922 | 215 | 909 | 2.62e-149 | 466 |
MS.gene45638.t1 | MTR_1g008060 | 45.009 | 531 | 252 | 10 | 224 | 748 | 870 | 1366 | 8.68e-131 | 432 |
MS.gene45638.t1 | MTR_1g008060 | 68.382 | 136 | 43 | 0 | 777 | 912 | 1551 | 1686 | 2.25e-54 | 206 |
MS.gene45638.t1 | MTR_1g008060 | 45.009 | 531 | 252 | 10 | 224 | 748 | 861 | 1357 | 1.02e-130 | 431 |
MS.gene45638.t1 | MTR_1g008060 | 68.382 | 136 | 43 | 0 | 777 | 912 | 1542 | 1677 | 2.47e-54 | 206 |
MS.gene45638.t1 | MTR_1g083120 | 34.582 | 694 | 365 | 13 | 224 | 874 | 198 | 845 | 1.31e-130 | 414 |
MS.gene45638.t1 | MTR_1g083120 | 34.846 | 683 | 357 | 12 | 224 | 864 | 198 | 834 | 1.51e-130 | 414 |
MS.gene45638.t1 | MTR_2g011630 | 34.245 | 768 | 425 | 16 | 224 | 926 | 207 | 959 | 2.71e-128 | 411 |
MS.gene45638.t1 | MTR_8g062940 | 53.279 | 366 | 140 | 3 | 224 | 589 | 33 | 367 | 7.30e-121 | 372 |
MS.gene45638.t1 | MTR_2g011630 | 33.869 | 685 | 375 | 13 | 306 | 926 | 45 | 715 | 1.07e-112 | 363 |
MS.gene45638.t1 | MTR_2g011630 | 33.869 | 685 | 375 | 13 | 306 | 926 | 77 | 747 | 2.11e-112 | 363 |
MS.gene45638.t1 | MTR_4g091520 | 36.250 | 560 | 265 | 13 | 446 | 922 | 727 | 1277 | 2.62e-100 | 342 |
MS.gene45638.t1 | MTR_4g091520 | 37.143 | 175 | 100 | 4 | 224 | 389 | 260 | 433 | 2.89e-28 | 123 |
MS.gene45638.t1 | MTR_2g024240 | 54.325 | 289 | 116 | 3 | 600 | 886 | 114 | 388 | 2.36e-98 | 314 |
MS.gene45638.t1 | MTR_4g091520 | 41.892 | 296 | 163 | 5 | 446 | 738 | 657 | 946 | 1.57e-61 | 228 |
MS.gene45638.t1 | MTR_4g091520 | 37.143 | 175 | 100 | 4 | 224 | 389 | 260 | 433 | 2.55e-28 | 123 |
MS.gene45638.t1 | MTR_4g091520 | 41.892 | 296 | 163 | 5 | 446 | 738 | 692 | 981 | 1.96e-61 | 228 |
MS.gene45638.t1 | MTR_4g091520 | 37.143 | 175 | 100 | 4 | 224 | 389 | 260 | 433 | 2.20e-28 | 123 |
MS.gene45638.t1 | MTR_4g091520 | 41.892 | 296 | 163 | 5 | 446 | 738 | 727 | 1016 | 2.04e-61 | 228 |
MS.gene45638.t1 | MTR_4g091520 | 37.143 | 175 | 100 | 4 | 224 | 389 | 260 | 433 | 2.41e-28 | 123 |
MS.gene45638.t1 | MTR_0295s0020 | 60.355 | 169 | 64 | 1 | 591 | 756 | 12 | 180 | 3.30e-60 | 203 |
MS.gene45638.t1 | MTR_8g465700 | 53.933 | 178 | 78 | 2 | 535 | 712 | 4 | 177 | 1.91e-53 | 188 |
MS.gene45638.t1 | MTR_6g051900 | 58.219 | 146 | 47 | 3 | 1 | 138 | 1 | 140 | 3.68e-39 | 142 |
MS.gene45638.t1 | MTR_5g098590 | 54.971 | 171 | 48 | 7 | 40 | 202 | 2 | 151 | 3.56e-35 | 131 |
MS.gene45638.t1 | MTR_8g465720 | 67.416 | 89 | 28 | 1 | 776 | 864 | 52 | 139 | 5.10e-35 | 131 |
MS.gene45638.t1 | MTR_8g013920 | 54.930 | 142 | 41 | 4 | 625 | 762 | 40 | 162 | 9.63e-33 | 125 |
MS.gene45638.t1 | MTR_1g114110 | 53.261 | 92 | 35 | 2 | 55 | 138 | 1 | 92 | 1.31e-17 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45638.t1 | AT1G11950 | 48.442 | 706 | 336 | 11 | 219 | 921 | 188 | 868 | 0.0 | 647 |
MS.gene45638.t1 | AT1G11950 | 48.442 | 706 | 336 | 11 | 219 | 921 | 188 | 868 | 0.0 | 647 |
MS.gene45638.t1 | AT1G62310 | 48.918 | 693 | 332 | 10 | 223 | 910 | 208 | 883 | 0.0 | 640 |
MS.gene45638.t1 | AT1G11950 | 47.261 | 639 | 309 | 11 | 219 | 854 | 188 | 801 | 0.0 | 559 |
MS.gene45638.t1 | AT3G07610 | 56.212 | 491 | 204 | 4 | 436 | 925 | 415 | 895 | 2.53e-178 | 544 |
MS.gene45638.t1 | AT3G07610 | 35.540 | 287 | 175 | 3 | 133 | 410 | 55 | 340 | 1.28e-47 | 184 |
MS.gene45638.t1 | AT3G07610 | 53.922 | 510 | 208 | 5 | 436 | 925 | 415 | 917 | 5.18e-170 | 523 |
MS.gene45638.t1 | AT3G07610 | 35.540 | 287 | 175 | 3 | 133 | 410 | 55 | 340 | 1.23e-47 | 184 |
MS.gene45638.t1 | AT4G00990 | 40.992 | 605 | 313 | 14 | 155 | 740 | 2 | 581 | 7.15e-135 | 423 |
MS.gene45638.t1 | AT4G00990 | 61.053 | 95 | 37 | 0 | 776 | 870 | 684 | 778 | 1.38e-30 | 130 |
MS.gene45638.t1 | AT4G00990 | 40.992 | 605 | 313 | 14 | 155 | 740 | 2 | 581 | 9.04e-135 | 422 |
MS.gene45638.t1 | AT4G00990 | 65.517 | 87 | 30 | 0 | 776 | 862 | 684 | 770 | 3.10e-30 | 129 |
MS.gene45638.t1 | AT4G00990 | 40.992 | 605 | 313 | 14 | 155 | 740 | 2 | 581 | 2.32e-134 | 424 |
MS.gene45638.t1 | AT4G00990 | 61.379 | 145 | 56 | 0 | 776 | 920 | 684 | 828 | 6.87e-52 | 196 |
MS.gene45638.t1 | AT1G09060 | 30.641 | 842 | 502 | 15 | 115 | 922 | 112 | 905 | 1.97e-120 | 390 |
MS.gene45638.t1 | AT1G09060 | 30.641 | 842 | 502 | 15 | 115 | 922 | 112 | 905 | 1.97e-120 | 390 |
MS.gene45638.t1 | AT1G09060 | 30.641 | 842 | 502 | 15 | 115 | 922 | 98 | 891 | 2.21e-120 | 389 |
MS.gene45638.t1 | AT1G09060 | 30.641 | 842 | 502 | 15 | 115 | 922 | 98 | 891 | 2.21e-120 | 389 |
MS.gene45638.t1 | AT3G07610 | 57.244 | 283 | 114 | 2 | 436 | 718 | 415 | 690 | 2.06e-95 | 318 |
MS.gene45638.t1 | AT3G07610 | 35.540 | 287 | 175 | 3 | 133 | 410 | 55 | 340 | 7.42e-48 | 183 |
MS.gene45638.t1 | AT4G21430 | 34.703 | 438 | 247 | 5 | 521 | 925 | 485 | 916 | 7.35e-80 | 279 |
MS.gene45638.t1 | AT4G21430 | 28.662 | 157 | 109 | 3 | 224 | 378 | 227 | 382 | 4.00e-11 | 67.8 |
Find 216 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTAGATATTCTTTCAATT+TGG | 0.093161 | 1.3:-76968953 | None:intergenic |
GCCGATTCTACCTGCTTTAA+AGG | 0.132025 | 1.3:-76969012 | None:intergenic |
ATATCACTCTCTTTCAATTT+AGG | 0.147719 | 1.3:-76965220 | None:intergenic |
GCCTCCTTCTGATTTATTTC+AGG | 0.172247 | 1.3:+76968001 | MS.gene45638:CDS |
GCACATCATGTATACAAAAT+TGG | 0.205416 | 1.3:+76964999 | MS.gene45638:CDS |
AAATCATACTCAAGCTTAAT+TGG | 0.220679 | 1.3:-76965886 | None:intergenic |
ATCCAAAACTACATCGTATT+TGG | 0.227892 | 1.3:-76966451 | None:intergenic |
TCACATTCATTATCAGCTTT+TGG | 0.248622 | 1.3:-76966048 | None:intergenic |
GGATTTGTGTATTCTTTATA+AGG | 0.268369 | 1.3:-76968065 | None:intergenic |
GTCGCAGCGATTGGCTTAAA+TGG | 0.273010 | 1.3:+76967952 | MS.gene45638:CDS |
AGTACATTGCTGACAATTAC+AGG | 0.278275 | 1.3:-76966360 | None:intergenic |
CCAAGAACATATATTGCTTA+TGG | 0.280860 | 1.3:+76968152 | MS.gene45638:CDS |
ATCCCAGAGAGCACCTTCTA+AGG | 0.286251 | 1.3:-76968908 | None:intergenic |
TGTCATTTCTTTGACATTGA+TGG | 0.286327 | 1.3:-76964931 | None:intergenic |
CTCCGTGGTGGGAAGCTTCT+AGG | 0.287089 | 1.3:+76965853 | MS.gene45638:CDS |
TCTAGATATTCTTTCAATTT+GGG | 0.290597 | 1.3:-76968952 | None:intergenic |
CTCCAAATACGATGTAGTTT+TGG | 0.304082 | 1.3:+76966449 | MS.gene45638:CDS |
ACTAACTCAGAGATGCAATT+TGG | 0.317312 | 1.3:-76966105 | None:intergenic |
CGACAGCGACACCACCGTTT+TGG | 0.322177 | 1.3:-76964449 | None:intergenic |
TCAGACCATTTATCTGAATA+TGG | 0.327236 | 1.3:+76969478 | MS.gene45638:CDS |
CCATAAGCAATATATGTTCT+TGG | 0.328103 | 1.3:-76968152 | None:intergenic |
CAACCTTGCTGTGAAGTTGC+CGG | 0.339593 | 1.3:+76968103 | MS.gene45638:CDS |
ATGCTCCATATTCAGATAAA+TGG | 0.340188 | 1.3:-76969483 | None:intergenic |
AGGGATGCAGAAGCGTTGTT+AGG | 0.362991 | 1.3:+76964616 | MS.gene45638:CDS |
ATGAAACTTAAGAAAGAGTA+TGG | 0.363484 | 1.3:+76969509 | MS.gene45638:CDS |
ATTCGTGAGTGGTCAAGATC+TGG | 0.381498 | 1.3:+76965991 | MS.gene45638:CDS |
ATCCCTTAGAAGGTGCTCTC+TGG | 0.383194 | 1.3:+76968905 | MS.gene45638:CDS |
CTAAAGATGAGCGTGTGTTC+TGG | 0.394804 | 1.3:+76965663 | MS.gene45638:CDS |
CTCAAAGCTAAATATAAAAC+CGG | 0.396606 | 1.3:+76965631 | MS.gene45638:CDS |
CTCAACCTCCTCCTCGTTGT+TGG | 0.396999 | 1.3:-76965424 | None:intergenic |
GTTCTTGCTCGAAACCTGTT+AGG | 0.397008 | 1.3:+76966196 | MS.gene45638:CDS |
TAGAGGAGACTCGTGATAAT+AGG | 0.397753 | 1.3:+76966172 | MS.gene45638:CDS |
TGATCAGGAATGGGTTCATC+TGG | 0.401180 | 1.3:-76964235 | None:intergenic |
ATCCTCCAACGGTACCGTTT+CGG | 0.404627 | 1.3:-76964296 | None:intergenic |
ATATCATCGGTGTACCTAAC+AGG | 0.407455 | 1.3:-76966210 | None:intergenic |
AGGCAGTTAATTGTTTAGAT+TGG | 0.408112 | 1.3:+76966478 | MS.gene45638:CDS |
TTCAATGGCACTGGAGCAAA+GGG | 0.413215 | 1.3:+76966334 | MS.gene45638:CDS |
TATGTTCTTGGCCCCATGTC+AGG | 0.417723 | 1.3:-76968140 | None:intergenic |
AATATCCACCAATTCTTCAC+TGG | 0.420686 | 1.3:+76967918 | MS.gene45638:CDS |
GACGATGAAGGTTCGGTTGA+AGG | 0.422097 | 1.3:+76964475 | MS.gene45638:CDS |
AGGTTGAGAGAACCACTAAA+AGG | 0.429360 | 1.3:-76968086 | None:intergenic |
CAGAAATTGAAAAGATGAAG+AGG | 0.429960 | 1.3:+76964596 | MS.gene45638:CDS |
CGAGGTCGCAATTATCTACA+TGG | 0.434006 | 1.3:+76965910 | MS.gene45638:CDS |
AATGTACTTGAATGCACATC+TGG | 0.441844 | 1.3:+76966375 | MS.gene45638:CDS |
TTTGTCTCTCCCGAACATAT+TGG | 0.442105 | 1.3:+76971068 | MS.gene45638:CDS |
AGGCTCTTCATCATTTCAAC+TGG | 0.442693 | 1.3:+76964681 | MS.gene45638:CDS |
GGAATGGGTTCATCTGGATC+AGG | 0.444988 | 1.3:-76964229 | None:intergenic |
GCAGCGGATCTGTGATTTAT+CGG | 0.450090 | 1.3:-76971128 | None:intergenic |
AACAGAATAAAGGAAGAAAC+TGG | 0.451192 | 1.3:+76964640 | MS.gene45638:CDS |
GTTGGAGAGGATCCCTTAGA+AGG | 0.451802 | 1.3:+76968895 | MS.gene45638:CDS |
GAAGCACTCACCAATATGTT+CGG | 0.452411 | 1.3:-76971078 | None:intergenic |
TACCGTTTCGGCGCCAACAT+TGG | 0.457827 | 1.3:-76964284 | None:intergenic |
TTCTTCACTGGGTACACAAA+TGG | 0.460684 | 1.3:+76967930 | MS.gene45638:CDS |
CGCCGAAACGGTACCGTTGG+AGG | 0.461207 | 1.3:+76964294 | MS.gene45638:CDS |
TCTTCCACATTTAAGACGGT+TGG | 0.461419 | 1.3:+76965473 | MS.gene45638:CDS |
GAAGTATCCTTCTCAGTTCA+AGG | 0.464781 | 1.3:-76966080 | None:intergenic |
AGCACCTTGAGCAAGATAAG+AGG | 0.465265 | 1.3:+76968800 | MS.gene45638:CDS |
TTAATGACACTAATTTCCTC+AGG | 0.465562 | 1.3:-76968763 | None:intergenic |
GGCCAATGTTGGCGCCGAAA+CGG | 0.467500 | 1.3:+76964282 | MS.gene45638:CDS |
TTACCTTCAGATTTCTGACT+TGG | 0.467821 | 1.3:-76969697 | None:intergenic |
AATGCACATCTGGTTTAAGC+TGG | 0.467845 | 1.3:+76966385 | MS.gene45638:CDS |
TCTTTCAATTTCAACACCTC+AGG | 0.472947 | 1.3:-76967975 | None:intergenic |
GTTTCTCGATGATCATGATC+AGG | 0.474522 | 1.3:-76964250 | None:intergenic |
ATTTGGAGTTGGTTATTTGA+CGG | 0.476343 | 1.3:-76966434 | None:intergenic |
TTGTGTACCCAGTGAAGAAT+TGG | 0.478196 | 1.3:-76967926 | None:intergenic |
TTAAGTTTCTTGTGGACTTG+TGG | 0.479397 | 1.3:-76964763 | None:intergenic |
GACTTGTAGGAATTGAGCCT+TGG | 0.481982 | 1.3:+76969621 | MS.gene45638:intron |
ATCCGCTGCGGACAAGTTTG+AGG | 0.482235 | 1.3:+76971142 | MS.gene45638:CDS |
ACACAAATGGTCGCAGCGAT+TGG | 0.484713 | 1.3:+76967943 | MS.gene45638:CDS |
AGCTGAAACGTCGTCGTTGA+AGG | 0.484777 | 1.3:+76964348 | MS.gene45638:CDS |
CGATGATCATGATCAGGAAT+GGG | 0.491693 | 1.3:-76964244 | None:intergenic |
AGGTGATAACATTGCAGCTA+GGG | 0.495234 | 1.3:+76964495 | MS.gene45638:CDS |
TCGATGATCATGATCAGGAA+TGG | 0.497827 | 1.3:-76964245 | None:intergenic |
TCCCTTAGAAGGTGCTCTCT+GGG | 0.498565 | 1.3:+76968906 | MS.gene45638:CDS |
ATCAAGTGCAACCTTGATGC+AGG | 0.498619 | 1.3:-76971045 | None:intergenic |
GTTGTTAGGGAACAGAATAA+AGG | 0.500566 | 1.3:+76964630 | MS.gene45638:CDS |
CACATCAAGCATAGCATGTA+CGG | 0.501504 | 1.3:-76971773 | None:intergenic |
ATCAATGTCAAAGAAATGAC+AGG | 0.501804 | 1.3:+76964933 | MS.gene45638:CDS |
GAGACGCGGCAGAAAGAGAA+AGG | 0.502047 | 1.3:+76964711 | MS.gene45638:CDS |
TGCGGAATTCCTCTGTCAAA+CGG | 0.503979 | 1.3:-76971100 | None:intergenic |
GTCGAAGGACGATGAAGGTT+CGG | 0.505191 | 1.3:+76964468 | MS.gene45638:CDS |
AGGTGTTGAAATTGAAAGAT+TGG | 0.508050 | 1.3:+76967979 | MS.gene45638:CDS |
AGGGATCCTCTCCAACCATC+AGG | 0.508501 | 1.3:-76968888 | None:intergenic |
GTATATTTACGCACAAACCT+TGG | 0.508550 | 1.3:-76972040 | None:intergenic |
AACTACATCGTATTTGGAGT+TGG | 0.509194 | 1.3:-76966445 | None:intergenic |
GGGATGCAGAAGCGTTGTTA+GGG | 0.509891 | 1.3:+76964617 | MS.gene45638:CDS |
TTTCAATGGCACTGGAGCAA+AGG | 0.515097 | 1.3:+76966333 | MS.gene45638:CDS |
GTTGACTCATATCGCTAAAG+TGG | 0.516636 | 1.3:+76968732 | MS.gene45638:CDS |
ACTGGTAAAGATGTGGTAGC+TGG | 0.518953 | 1.3:+76964658 | MS.gene45638:CDS |
TCAGGCTTTACACAATAATC+CGG | 0.522487 | 1.3:-76968122 | None:intergenic |
CGCAGCAACAGAGGAGACAA+AGG | 0.527535 | 1.3:-76965828 | None:intergenic |
AAGCACTCACCAATATGTTC+GGG | 0.527844 | 1.3:-76971077 | None:intergenic |
GCTGATAATGAATGTGATCA+TGG | 0.528933 | 1.3:+76966054 | MS.gene45638:CDS |
TCTGTTGCAGTCCTGCATCA+AGG | 0.530126 | 1.3:+76971034 | MS.gene45638:intron |
TGAAGAACAAATGATTGAGA+AGG | 0.530667 | 1.3:+76965497 | MS.gene45638:CDS |
AAGAGGGAGCTACATGGTGA+TGG | 0.531116 | 1.3:+76968817 | MS.gene45638:CDS |
GTTGCTGCGAGCTCCGTGGT+GGG | 0.531732 | 1.3:+76965842 | MS.gene45638:CDS |
GATAAATGGTCTGATCATGA+AGG | 0.531871 | 1.3:-76969469 | None:intergenic |
AGAGGGAGCTACATGGTGAT+GGG | 0.532113 | 1.3:+76968818 | MS.gene45638:CDS |
ATGGTTTCCTTGAACTGAGA+AGG | 0.533086 | 1.3:+76966073 | MS.gene45638:CDS |
CAAACCAGCAGGAATGAAAA+CGG | 0.534926 | 1.3:-76969669 | None:intergenic |
GCTACATGGTGATGGGGAGG+CGG | 0.535164 | 1.3:+76968825 | MS.gene45638:CDS |
TGTGTATTCTTTATAAGGCA+AGG | 0.535177 | 1.3:-76968060 | None:intergenic |
TATGGATTTACTCAAAATCT+CGG | 0.535793 | 1.3:+76968170 | MS.gene45638:CDS |
TATAGGAATACCTCGTCTCC+TGG | 0.539286 | 1.3:-76965529 | None:intergenic |
TATGCATGTTGGCGCCAAAA+CGG | 0.540397 | 1.3:+76964435 | MS.gene45638:CDS |
AACGGTGGTGTCGCTGTCGA+AGG | 0.540573 | 1.3:+76964453 | MS.gene45638:CDS |
TGTGTTATTGTGTATATCAT+CGG | 0.540704 | 1.3:-76966223 | None:intergenic |
TTCGTGAGTGGTCAAGATCT+GGG | 0.542666 | 1.3:+76965992 | MS.gene45638:CDS |
CAATTGCATTCCTTTAAAGC+AGG | 0.542700 | 1.3:+76969002 | MS.gene45638:CDS |
TCGGCGCCAACATTGGCCGT+AGG | 0.543112 | 1.3:-76964277 | None:intergenic |
GCTCCCTCTTATCTTGCTCA+AGG | 0.544578 | 1.3:-76968804 | None:intergenic |
ACTTGGTGAGGCAAACCAGC+AGG | 0.547834 | 1.3:-76969680 | None:intergenic |
GCACCTTGAGCAAGATAAGA+GGG | 0.549030 | 1.3:+76968801 | MS.gene45638:CDS |
TTAGATGCACAAAATGCAAA+CGG | 0.550175 | 1.3:+76964966 | MS.gene45638:CDS |
TCCCAGAGAGCACCTTCTAA+GGG | 0.550365 | 1.3:-76968907 | None:intergenic |
TCATCCAACCGTCTTAAATG+TGG | 0.550657 | 1.3:-76965477 | None:intergenic |
AACTCAGAGATGCAATTTGG+AGG | 0.551495 | 1.3:-76966102 | None:intergenic |
TGGTGTAGATCTACAGCCCT+TGG | 0.555022 | 1.3:-76966294 | None:intergenic |
TTGACATTGATGGCACATTG+AGG | 0.559359 | 1.3:-76964921 | None:intergenic |
GTGGCACAAGCTATCGGTGT+TGG | 0.561909 | 1.3:+76964325 | MS.gene45638:CDS |
TGTTGCTGCGAGCTCCGTGG+TGG | 0.562600 | 1.3:+76965841 | MS.gene45638:CDS |
ATATCCACCAATTCTTCACT+GGG | 0.564592 | 1.3:+76967919 | MS.gene45638:CDS |
TTCTCTAAGTATCTGCTGAA+AGG | 0.564863 | 1.3:+76965447 | MS.gene45638:CDS |
TTCAGATTTCTGACTTGGTG+AGG | 0.565040 | 1.3:-76969692 | None:intergenic |
GACTTCTTCCACATTTAAGA+CGG | 0.566290 | 1.3:+76965469 | MS.gene45638:CDS |
AGAAATTGAAAAGATGAAGA+GGG | 0.567266 | 1.3:+76964597 | MS.gene45638:CDS |
TGTACCCAGTGAAGAATTGG+TGG | 0.567688 | 1.3:-76967923 | None:intergenic |
ATTTGAAATTTCAATGGCGG+AGG | 0.570807 | 1.3:+76964150 | None:intergenic |
AAGGTGATAACATTGCAGCT+AGG | 0.571180 | 1.3:+76964494 | MS.gene45638:CDS |
ACACAACCTACGGCCAATGT+TGG | 0.573109 | 1.3:+76964271 | MS.gene45638:CDS |
ACAGCACACAGGGCATGCCT+TGG | 0.575809 | 1.3:-76965245 | None:intergenic |
CAAGATAAGAGGGAGCTACA+TGG | 0.577423 | 1.3:+76968811 | MS.gene45638:CDS |
ATGCACATCTGGTTTAAGCT+GGG | 0.577804 | 1.3:+76966386 | MS.gene45638:CDS |
CAACTCTCTGACACTAATGA+TGG | 0.579184 | 1.3:+76968862 | MS.gene45638:CDS |
CGCCGCCGCAGCTTTAGCAG+AGG | 0.580166 | 1.3:-76964524 | None:intergenic |
CACGGAGCTCGCAGCAACAG+AGG | 0.580415 | 1.3:-76965837 | None:intergenic |
GGAGCTACATGGTGATGGGG+AGG | 0.581361 | 1.3:+76968822 | MS.gene45638:CDS |
TGCAATTATCACAGCACACA+GGG | 0.584315 | 1.3:-76965255 | None:intergenic |
ACTATAGGAAATGAAGCGTA+AGG | 0.584966 | 1.3:+76965395 | MS.gene45638:intron |
GGTGACGTGGCACAAGCTAT+CGG | 0.585670 | 1.3:+76964319 | MS.gene45638:CDS |
ATAAATGGTCTGATCATGAA+GGG | 0.587122 | 1.3:-76969468 | None:intergenic |
CATCATTAGTGTCAGAGAGT+TGG | 0.587536 | 1.3:-76968861 | None:intergenic |
AATCAAGCTTCAAGATGTAG+AGG | 0.589159 | 1.3:+76966155 | MS.gene45638:CDS |
TATTGTGTAAAGCCTGACAT+GGG | 0.589216 | 1.3:+76968128 | MS.gene45638:CDS |
TGAAACCAACAACGAGGAGG+AGG | 0.589775 | 1.3:+76965419 | MS.gene45638:CDS |
AGTTCCTGAAATAAATCAGA+AGG | 0.590173 | 1.3:-76968005 | None:intergenic |
GAATGGGTTCATCTGGATCA+GGG | 0.590909 | 1.3:-76964228 | None:intergenic |
CACTAATGATGGTGACCTGA+TGG | 0.592137 | 1.3:+76968873 | MS.gene45638:CDS |
TGGACAAGGAATGCTACCAT+CGG | 0.593451 | 1.3:-76966028 | None:intergenic |
GCAATTGCAAAGCATGCTTG+CGG | 0.593478 | 1.3:+76965275 | MS.gene45638:CDS |
TGGCGCCGAAACGGTACCGT+TGG | 0.594492 | 1.3:+76964291 | MS.gene45638:CDS |
AATCAGCGAGAGTAATGCTA+AGG | 0.594627 | 1.3:+76964786 | MS.gene45638:CDS |
TTACAGGTCTGGGAAAGCCA+AGG | 0.595635 | 1.3:+76972023 | MS.gene45638:intron |
TTGAGAAGGAAAGAGAAGCC+AGG | 0.596035 | 1.3:+76965511 | MS.gene45638:CDS |
GAAAGAGAAGCCAGGAGACG+AGG | 0.596795 | 1.3:+76965519 | MS.gene45638:CDS |
AATGATGGTGACCTGATGGT+TGG | 0.598278 | 1.3:+76968877 | MS.gene45638:CDS |
AACTTCTGAATAAAAGTCCA+AGG | 0.598579 | 1.3:-76969638 | None:intergenic |
AGAAAGTGTATCACATGCAG+AGG | 0.606509 | 1.3:+76965957 | MS.gene45638:CDS |
CACCTAGAAGCTTCCCACCA+CGG | 0.608942 | 1.3:-76965855 | None:intergenic |
TCATCGAGAAACACAACCTA+CGG | 0.610549 | 1.3:+76964261 | MS.gene45638:CDS |
GGGTTCATCTGGATCAGGGA+GGG | 0.610921 | 1.3:-76964224 | None:intergenic |
TGTGATTTATCGGAAGCTTG+CGG | 0.611620 | 1.3:-76971118 | None:intergenic |
GGAAGAAACTGGTAAAGATG+TGG | 0.613492 | 1.3:+76964651 | MS.gene45638:CDS |
GAAACGGTACCGTTGGAGGA+TGG | 0.613747 | 1.3:+76964298 | MS.gene45638:CDS |
TTATTGTGTAAAGCCTGACA+TGG | 0.616770 | 1.3:+76968127 | MS.gene45638:CDS |
CTCTGTTGCTGCGAGCTCCG+TGG | 0.620459 | 1.3:+76965838 | MS.gene45638:CDS |
TTGCAATTATCACAGCACAC+AGG | 0.625183 | 1.3:-76965256 | None:intergenic |
GAAAGAGAGTGATATTGCCA+AGG | 0.625820 | 1.3:+76965228 | MS.gene45638:CDS |
TCGCTGTCGAAGGACGATGA+AGG | 0.626327 | 1.3:+76964463 | MS.gene45638:CDS |
TCCTGAAATAAATCAGAAGG+AGG | 0.633909 | 1.3:-76968002 | None:intergenic |
TATACACAATAACACAAGGA+AGG | 0.636388 | 1.3:+76966230 | MS.gene45638:CDS |
ATCCTCTGCTAAAGCTGCGG+CGG | 0.638471 | 1.3:+76964522 | MS.gene45638:CDS |
TCACCAAGTCAGAAATCTGA+AGG | 0.640211 | 1.3:+76969694 | MS.gene45638:CDS |
CGTACATGCTATGCTTGATG+TGG | 0.642539 | 1.3:+76971774 | MS.gene45638:CDS |
AACCTCAAACTTGTCCGCAG+CGG | 0.644100 | 1.3:-76971144 | None:intergenic |
AATGCACGCCACATGACTAG+TGG | 0.646851 | 1.3:-76966411 | None:intergenic |
ACCGTTGGAGGATGGTGACG+TGG | 0.648574 | 1.3:+76964306 | MS.gene45638:CDS |
GGTAAAGATGTGGTAGCTGG+AGG | 0.648889 | 1.3:+76964661 | MS.gene45638:CDS |
TTCATCCTCTGCTAAAGCTG+CGG | 0.652304 | 1.3:+76964519 | MS.gene45638:CDS |
TCATCTTTAGAATAATCCGC+CGG | 0.653440 | 1.3:-76965650 | None:intergenic |
GAGGGAGCTACATGGTGATG+GGG | 0.656552 | 1.3:+76968819 | MS.gene45638:CDS |
CGTGGTGGGAAGCTTCTAGG+TGG | 0.658159 | 1.3:+76965856 | MS.gene45638:CDS |
TAATTGTTTAGATTGGTGTG+AGG | 0.659042 | 1.3:+76966485 | MS.gene45638:CDS |
TAAATGGTCTGATCATGAAG+GGG | 0.660847 | 1.3:-76969467 | None:intergenic |
GCGGCGGCGATAATGAAATG+CGG | 0.661761 | 1.3:+76964538 | MS.gene45638:CDS |
AAAGCTAAATATAAAACCGG+CGG | 0.661902 | 1.3:+76965634 | MS.gene45638:CDS |
TGAGTGCTTCCGTTTGACAG+AGG | 0.665002 | 1.3:+76971091 | MS.gene45638:CDS |
GCCACGTCACCATCCTCCAA+CGG | 0.665173 | 1.3:-76964307 | None:intergenic |
AATCCGGCAACTTCACAGCA+AGG | 0.666731 | 1.3:-76968106 | None:intergenic |
TAAAGTGGAACTAAAACCTG+AGG | 0.669552 | 1.3:+76968747 | MS.gene45638:CDS |
CGATTGGCTTAAATGGCCTG+AGG | 0.670626 | 1.3:+76967959 | MS.gene45638:CDS |
GGGTGGCATGCAAATGCCGA+TGG | 0.671435 | 1.3:+76966012 | MS.gene45638:CDS |
GCTGGGAACCACTAGTCATG+TGG | 0.677762 | 1.3:+76966403 | MS.gene45638:CDS |
ATGAGTCTACGATTCGTGAG+TGG | 0.678627 | 1.3:+76965980 | MS.gene45638:CDS |
ACGCGGCAGAAAGAGAAAGG+CGG | 0.678843 | 1.3:+76964714 | MS.gene45638:CDS |
TGGGTTCATCTGGATCAGGG+AGG | 0.685323 | 1.3:-76964225 | None:intergenic |
TCAATGTCAAAGAAATGACA+GGG | 0.687101 | 1.3:+76964934 | MS.gene45638:CDS |
TTTACTCAAAATCTCGGACG+CGG | 0.689301 | 1.3:+76968176 | MS.gene45638:CDS |
ATGAACTCAGCATGATGACG+AGG | 0.692646 | 1.3:-76968032 | None:intergenic |
ATTGTGTAAAGCCTGACATG+GGG | 0.693819 | 1.3:+76968129 | MS.gene45638:CDS |
CTGCATCAGACACATCACAA+TGG | 0.698372 | 1.3:-76968217 | None:intergenic |
GGTCGCAATTATCTACATGG+TGG | 0.698999 | 1.3:+76965913 | MS.gene45638:CDS |
GGCTGAAACCAACAACGAGG+AGG | 0.705772 | 1.3:+76965416 | MS.gene45638:CDS |
TGGTGACCTGATGGTTGGAG+AGG | 0.707195 | 1.3:+76968882 | MS.gene45638:CDS |
ATGATATACACAATAACACA+AGG | 0.707929 | 1.3:+76966226 | MS.gene45638:CDS |
GGACGATGAACGTGATGACG+TGG | 0.712626 | 1.3:+76964369 | MS.gene45638:CDS |
AAATGGTCTGATCATGAAGG+GGG | 0.713662 | 1.3:-76969466 | None:intergenic |
GCATGTTGGCGCCAAAACGG+TGG | 0.714446 | 1.3:+76964438 | MS.gene45638:CDS |
AGGGCTGTAGATCTACACCA+TGG | 0.722496 | 1.3:+76966297 | MS.gene45638:CDS |
CAACTGGTGAGAAAGAGACG+CGG | 0.745058 | 1.3:+76964697 | MS.gene45638:CDS |
GATAAATCACAGATCCGCTG+CGG | 0.750646 | 1.3:+76971130 | MS.gene45638:CDS |
CGATGAACGTGATGACGTGG+TGG | 0.763971 | 1.3:+76964372 | MS.gene45638:CDS |
TCAATGGCACTGGAGCAAAG+GGG | 0.769506 | 1.3:+76966335 | MS.gene45638:CDS |
GTGAGTGGTCAAGATCTGGG+TGG | 0.773278 | 1.3:+76965995 | MS.gene45638:CDS |
TAAGGCTGAAACCAACAACG+AGG | 0.802053 | 1.3:+76965413 | MS.gene45638:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 76964163 | 76972056 | 76964163 | ID=MS.gene45638 |
chr1.3 | mRNA | 76964163 | 76972056 | 76964163 | ID=MS.gene45638.t1;Parent=MS.gene45638 |
chr1.3 | exon | 76964163 | 76964807 | 76964163 | ID=MS.gene45638.t1.exon1;Parent=MS.gene45638.t1 |
chr1.3 | CDS | 76964163 | 76964807 | 76964163 | ID=cds.MS.gene45638.t1;Parent=MS.gene45638.t1 |
chr1.3 | exon | 76964905 | 76965020 | 76964905 | ID=MS.gene45638.t1.exon2;Parent=MS.gene45638.t1 |
chr1.3 | CDS | 76964905 | 76965020 | 76964905 | ID=cds.MS.gene45638.t1;Parent=MS.gene45638.t1 |
chr1.3 | exon | 76965216 | 76965315 | 76965216 | ID=MS.gene45638.t1.exon3;Parent=MS.gene45638.t1 |
chr1.3 | CDS | 76965216 | 76965315 | 76965216 | ID=cds.MS.gene45638.t1;Parent=MS.gene45638.t1 |
chr1.3 | exon | 76965402 | 76965540 | 76965402 | ID=MS.gene45638.t1.exon4;Parent=MS.gene45638.t1 |
chr1.3 | CDS | 76965402 | 76965540 | 76965402 | ID=cds.MS.gene45638.t1;Parent=MS.gene45638.t1 |
chr1.3 | exon | 76965621 | 76965684 | 76965621 | ID=MS.gene45638.t1.exon5;Parent=MS.gene45638.t1 |
chr1.3 | CDS | 76965621 | 76965684 | 76965621 | ID=cds.MS.gene45638.t1;Parent=MS.gene45638.t1 |
chr1.3 | exon | 76965768 | 76966506 | 76965768 | ID=MS.gene45638.t1.exon6;Parent=MS.gene45638.t1 |
chr1.3 | CDS | 76965768 | 76966506 | 76965768 | ID=cds.MS.gene45638.t1;Parent=MS.gene45638.t1 |
chr1.3 | exon | 76967909 | 76968238 | 76967909 | ID=MS.gene45638.t1.exon7;Parent=MS.gene45638.t1 |
chr1.3 | CDS | 76967909 | 76968238 | 76967909 | ID=cds.MS.gene45638.t1;Parent=MS.gene45638.t1 |
chr1.3 | exon | 76968724 | 76969023 | 76968724 | ID=MS.gene45638.t1.exon8;Parent=MS.gene45638.t1 |
chr1.3 | CDS | 76968724 | 76969023 | 76968724 | ID=cds.MS.gene45638.t1;Parent=MS.gene45638.t1 |
chr1.3 | exon | 76969458 | 76969530 | 76969458 | ID=MS.gene45638.t1.exon9;Parent=MS.gene45638.t1 |
chr1.3 | CDS | 76969458 | 76969530 | 76969458 | ID=cds.MS.gene45638.t1;Parent=MS.gene45638.t1 |
chr1.3 | exon | 76969630 | 76969715 | 76969630 | ID=MS.gene45638.t1.exon10;Parent=MS.gene45638.t1 |
chr1.3 | CDS | 76969630 | 76969715 | 76969630 | ID=cds.MS.gene45638.t1;Parent=MS.gene45638.t1 |
chr1.3 | exon | 76971044 | 76971163 | 76971044 | ID=MS.gene45638.t1.exon11;Parent=MS.gene45638.t1 |
chr1.3 | CDS | 76971044 | 76971163 | 76971044 | ID=cds.MS.gene45638.t1;Parent=MS.gene45638.t1 |
chr1.3 | exon | 76971760 | 76971818 | 76971760 | ID=MS.gene45638.t1.exon12;Parent=MS.gene45638.t1 |
chr1.3 | CDS | 76971760 | 76971818 | 76971760 | ID=cds.MS.gene45638.t1;Parent=MS.gene45638.t1 |
chr1.3 | exon | 76972029 | 76972056 | 76972029 | ID=MS.gene45638.t1.exon13;Parent=MS.gene45638.t1 |
chr1.3 | CDS | 76972029 | 76972056 | 76972029 | ID=cds.MS.gene45638.t1;Parent=MS.gene45638.t1 |
Gene Sequence |
Protein sequence |