Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45671.t1 | RHN61288.1 | 96.8 | 617 | 20 | 0 | 1 | 617 | 1 | 617 | 1.90E-255 | 891.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45671.t1 | F4IHL3 | 65.4 | 624 | 193 | 4 | 1 | 609 | 1 | 616 | 1.7e-140 | 501.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45671.t1 | A0A396I8Z7 | 96.8 | 617 | 20 | 0 | 1 | 617 | 1 | 617 | 1.4e-255 | 891.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene45671.t1 | TR | mTERF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45671.t1 | MTR_4g070060 | 96.272 | 617 | 23 | 0 | 1 | 617 | 1 | 617 | 0.0 | 1227 |
MS.gene45671.t1 | MTR_5g068860 | 27.324 | 355 | 250 | 4 | 235 | 587 | 136 | 484 | 1.00e-35 | 141 |
MS.gene45671.t1 | MTR_1g115415 | 24.859 | 354 | 256 | 4 | 235 | 585 | 104 | 450 | 6.08e-33 | 133 |
MS.gene45671.t1 | MTR_6g003960 | 27.726 | 321 | 228 | 4 | 266 | 585 | 270 | 587 | 3.06e-31 | 129 |
MS.gene45671.t1 | MTR_4g084630 | 25.714 | 315 | 194 | 6 | 275 | 586 | 42 | 319 | 5.35e-31 | 124 |
MS.gene45671.t1 | MTR_2g034600 | 28.114 | 281 | 165 | 5 | 349 | 595 | 215 | 492 | 1.63e-25 | 110 |
MS.gene45671.t1 | MTR_2g034600 | 25.000 | 236 | 165 | 5 | 271 | 504 | 244 | 469 | 9.32e-18 | 87.0 |
MS.gene45671.t1 | MTR_2g034600 | 32.000 | 150 | 98 | 2 | 414 | 560 | 208 | 356 | 3.32e-14 | 75.9 |
MS.gene45671.t1 | MTR_2g034600 | 28.114 | 281 | 165 | 5 | 349 | 595 | 276 | 553 | 2.21e-25 | 110 |
MS.gene45671.t1 | MTR_2g034600 | 25.000 | 236 | 165 | 5 | 271 | 504 | 305 | 530 | 1.35e-17 | 86.7 |
MS.gene45671.t1 | MTR_2g034600 | 32.000 | 150 | 98 | 2 | 414 | 560 | 269 | 417 | 4.26e-14 | 75.9 |
MS.gene45671.t1 | MTR_2g034600 | 28.114 | 281 | 165 | 5 | 349 | 595 | 280 | 557 | 2.78e-25 | 110 |
MS.gene45671.t1 | MTR_2g034600 | 25.000 | 236 | 165 | 5 | 271 | 504 | 309 | 534 | 1.34e-17 | 86.7 |
MS.gene45671.t1 | MTR_2g034600 | 32.000 | 150 | 98 | 2 | 414 | 560 | 273 | 421 | 4.61e-14 | 75.5 |
MS.gene45671.t1 | MTR_2g067230 | 29.070 | 258 | 169 | 7 | 347 | 602 | 71 | 316 | 6.28e-23 | 100 |
MS.gene45671.t1 | MTR_2g049780 | 28.448 | 232 | 160 | 5 | 361 | 590 | 82 | 309 | 9.40e-20 | 90.9 |
MS.gene45671.t1 | MTR_5g094610 | 23.746 | 299 | 186 | 6 | 274 | 566 | 187 | 449 | 8.64e-19 | 90.1 |
MS.gene45671.t1 | MTR_5g094610 | 23.529 | 272 | 198 | 6 | 198 | 462 | 182 | 450 | 3.70e-12 | 69.3 |
MS.gene45671.t1 | MTR_5g041630 | 28.696 | 230 | 156 | 5 | 357 | 582 | 64 | 289 | 1.62e-16 | 81.3 |
MS.gene45671.t1 | MTR_8g105560 | 21.371 | 248 | 190 | 2 | 298 | 543 | 111 | 355 | 7.46e-15 | 78.2 |
MS.gene45671.t1 | MTR_7g081270 | 27.670 | 206 | 142 | 5 | 384 | 585 | 77 | 279 | 2.09e-14 | 74.3 |
MS.gene45671.t1 | MTR_3g092710 | 22.469 | 405 | 246 | 15 | 210 | 564 | 83 | 469 | 5.23e-13 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45671.t1 | AT2G21710 | 60.202 | 593 | 221 | 3 | 32 | 609 | 24 | 616 | 0.0 | 754 |
MS.gene45671.t1 | AT2G21710 | 60.976 | 533 | 193 | 3 | 32 | 549 | 24 | 556 | 0.0 | 682 |
MS.gene45671.t1 | AT2G21710 | 61.090 | 532 | 192 | 3 | 32 | 548 | 24 | 555 | 0.0 | 680 |
MS.gene45671.t1 | AT4G02990 | 27.841 | 352 | 246 | 4 | 236 | 585 | 145 | 490 | 1.19e-34 | 138 |
MS.gene45671.t1 | AT4G02990 | 27.841 | 352 | 246 | 4 | 236 | 585 | 145 | 490 | 1.19e-34 | 138 |
MS.gene45671.t1 | AT1G78930 | 29.296 | 355 | 241 | 7 | 234 | 585 | 227 | 574 | 1.53e-33 | 135 |
MS.gene45671.t1 | AT1G78930 | 23.774 | 265 | 196 | 3 | 203 | 462 | 260 | 523 | 4.56e-15 | 79.0 |
MS.gene45671.t1 | AT2G44020 | 24.737 | 380 | 266 | 5 | 235 | 611 | 109 | 471 | 3.33e-33 | 134 |
MS.gene45671.t1 | AT4G38160 | 26.786 | 336 | 202 | 8 | 257 | 586 | 24 | 321 | 1.33e-31 | 125 |
MS.gene45671.t1 | AT4G38160 | 26.786 | 336 | 202 | 8 | 257 | 586 | 24 | 321 | 1.33e-31 | 125 |
MS.gene45671.t1 | AT4G38160 | 26.786 | 336 | 202 | 8 | 257 | 586 | 24 | 321 | 2.82e-31 | 125 |
MS.gene45671.t1 | AT4G38160 | 26.786 | 336 | 202 | 8 | 257 | 586 | 24 | 321 | 4.01e-31 | 125 |
MS.gene45671.t1 | AT4G14605 | 24.206 | 252 | 183 | 5 | 336 | 585 | 222 | 467 | 2.15e-21 | 98.2 |
MS.gene45671.t1 | AT4G14605 | 25.824 | 182 | 128 | 2 | 274 | 455 | 268 | 442 | 3.76e-14 | 75.9 |
MS.gene45671.t1 | AT4G14605 | 24.206 | 252 | 183 | 5 | 336 | 585 | 222 | 467 | 2.15e-21 | 98.2 |
MS.gene45671.t1 | AT4G14605 | 25.824 | 182 | 128 | 2 | 274 | 455 | 268 | 442 | 3.76e-14 | 75.9 |
MS.gene45671.t1 | AT5G55580 | 27.863 | 262 | 140 | 8 | 349 | 567 | 82 | 337 | 2.13e-20 | 94.4 |
MS.gene45671.t1 | AT5G55580 | 24.113 | 282 | 204 | 5 | 198 | 472 | 69 | 347 | 2.20e-12 | 69.7 |
MS.gene45671.t1 | AT2G34620 | 27.600 | 250 | 172 | 6 | 344 | 591 | 54 | 296 | 2.59e-20 | 92.4 |
MS.gene45671.t1 | AT5G55580 | 27.863 | 262 | 140 | 8 | 349 | 567 | 188 | 443 | 2.74e-20 | 95.1 |
MS.gene45671.t1 | AT5G55580 | 24.823 | 282 | 202 | 4 | 198 | 472 | 175 | 453 | 1.63e-12 | 70.5 |
MS.gene45671.t1 | AT2G36000 | 28.400 | 250 | 159 | 9 | 348 | 590 | 76 | 312 | 4.77e-18 | 86.3 |
MS.gene45671.t1 | AT2G36000 | 28.400 | 250 | 159 | 9 | 348 | 590 | 76 | 312 | 4.96e-18 | 85.9 |
MS.gene45671.t1 | AT2G03050 | 27.984 | 243 | 165 | 6 | 348 | 587 | 35 | 270 | 6.41e-17 | 82.0 |
MS.gene45671.t1 | AT2G03050 | 27.984 | 243 | 165 | 6 | 348 | 587 | 36 | 271 | 6.50e-17 | 82.0 |
MS.gene45671.t1 | AT5G54180 | 23.708 | 329 | 199 | 10 | 269 | 592 | 214 | 495 | 9.03e-17 | 84.0 |
MS.gene45671.t1 | AT3G46950 | 27.507 | 349 | 224 | 13 | 267 | 604 | 111 | 441 | 6.51e-15 | 77.8 |
MS.gene45671.t1 | AT5G55580 | 29.167 | 192 | 123 | 7 | 349 | 533 | 188 | 373 | 8.27e-15 | 77.0 |
MS.gene45671.t1 | AT5G55580 | 23.267 | 202 | 152 | 3 | 277 | 476 | 187 | 387 | 9.13e-13 | 70.9 |
MS.gene45671.t1 | AT5G55580 | 23.295 | 176 | 128 | 4 | 276 | 446 | 221 | 394 | 3.60e-12 | 68.9 |
MS.gene45671.t1 | AT3G18870 | 26.471 | 204 | 143 | 5 | 385 | 585 | 69 | 268 | 5.89e-14 | 73.2 |
MS.gene45671.t1 | AT1G79220 | 23.438 | 256 | 187 | 5 | 320 | 575 | 91 | 337 | 7.22e-13 | 71.2 |
MS.gene45671.t1 | AT1G62110 | 24.340 | 341 | 219 | 11 | 266 | 585 | 112 | 434 | 5.05e-11 | 65.9 |
Find 127 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGATTACTTGAAAGAATT+TGG | 0.111467 | 4.4:+37802090 | MS.gene45671:CDS |
GTTAAGTATCTGTACTATTA+TGG | 0.143456 | 4.4:+37802198 | MS.gene45671:CDS |
TGACAGTAGATTGAAGTTTA+TGG | 0.164656 | 4.4:-37803264 | None:intergenic |
GGTTTAGATGCGAAGGATTT+TGG | 0.193478 | 4.4:+37801876 | MS.gene45671:CDS |
CTTCTTCATCACACCGAAAA+AGG | 0.200244 | 4.4:-37800558 | None:intergenic |
AATTACTTATACTGGTAATT+TGG | 0.209026 | 4.4:+37800669 | MS.gene45671:CDS |
CGGCGTACGTCTTCGGCAAC+TGG | 0.234628 | 4.4:+37802859 | MS.gene45671:CDS |
TGTGCAGTTCTATCTGGATA+TGG | 0.253475 | 4.4:+37801854 | MS.gene45671:CDS |
TTGACGATGGTGGTGAGTTT+TGG | 0.269650 | 4.4:-37800262 | None:intergenic |
TTGTTAAGGGAGAGTTTATT+GGG | 0.275265 | 4.4:+37801664 | MS.gene45671:CDS |
GCAATGCGGAAGGGTAAATT+TGG | 0.282919 | 4.4:+37800646 | MS.gene45671:CDS |
CTCAAGTTGTGCCACTTATC+AGG | 0.283792 | 4.4:+37800809 | MS.gene45671:CDS |
GTTGATTATTTAGAGTTTAC+TGG | 0.287836 | 4.4:+37801750 | MS.gene45671:CDS |
TTAAGTATCTGTACTATTAT+GGG | 0.290110 | 4.4:+37802199 | MS.gene45671:CDS |
TTACGTCTGGGCTGTAGATT+GGG | 0.309402 | 4.4:-37803308 | None:intergenic |
AGAAGAAGAGGGAATGATTA+TGG | 0.309975 | 4.4:+37800576 | MS.gene45671:CDS |
AAATTTGGAATTACTTATAC+TGG | 0.310485 | 4.4:+37800661 | MS.gene45671:CDS |
GGTAATTTGGTTGATAGGTT+GGG | 0.326740 | 4.4:+37800682 | MS.gene45671:CDS |
TTTACGTCTGGGCTGTAGAT+TGG | 0.328647 | 4.4:-37803309 | None:intergenic |
ATACTGGTAATTTGGTTGAT+AGG | 0.329853 | 4.4:+37800677 | MS.gene45671:CDS |
GTATAGTGACCGAGAGCTTT+AGG | 0.334085 | 4.4:-37801918 | None:intergenic |
TTTGTTAAGGGAGAGTTTAT+TGG | 0.337774 | 4.4:+37801663 | MS.gene45671:CDS |
TGTCTCTCGGCGTACGTCTT+CGG | 0.342879 | 4.4:+37802852 | MS.gene45671:CDS |
GATTCGTGTGCAGTTCTATC+TGG | 0.345662 | 4.4:+37801848 | MS.gene45671:CDS |
TTGATTACTTGAAAGAATTT+GGG | 0.348366 | 4.4:+37802091 | MS.gene45671:CDS |
AGAATTTGGGCTTGAAAGTA+AGG | 0.349816 | 4.4:+37802104 | MS.gene45671:CDS |
TTCTGGGAATTGGTTCGTTT+TGG | 0.355261 | 4.4:-37800309 | None:intergenic |
TGCTAATTTGAAAAGATTGC+CGG | 0.361400 | 4.4:+37800735 | MS.gene45671:CDS |
ATTCCAAAGGTTATAGCTCT+TGG | 0.363130 | 4.4:+37802770 | MS.gene45671:CDS |
GTTGAAGTCGGTGTTTGTTA+AGG | 0.364469 | 4.4:+37801650 | MS.gene45671:CDS |
GAGGGAAACTTGAGTCTATA+AGG | 0.365728 | 4.4:+37801613 | MS.gene45671:CDS |
AGCTCTTGGACCTGAGCTCT+TGG | 0.369738 | 4.4:+37802784 | MS.gene45671:CDS |
TGCATTTCGGCCACAATTGA+TGG | 0.374643 | 4.4:+37802143 | MS.gene45671:CDS |
GGTGTTGTTCGTTTGGGTTT+TGG | 0.381963 | 4.4:-37800288 | None:intergenic |
AAAAGAACCCCACAATTTCC+AGG | 0.382415 | 4.4:+37800472 | MS.gene45671:CDS |
GCATTGTGTCTTCTGGGAAT+TGG | 0.382568 | 4.4:-37800319 | None:intergenic |
GGTCCAAGAGCTATAACCTT+TGG | 0.387818 | 4.4:-37802773 | None:intergenic |
CCATTGTTCTTCAATGCTGC+AGG | 0.389577 | 4.4:-37802166 | None:intergenic |
TTGAAGTCGGTGTTTGTTAA+GGG | 0.394753 | 4.4:+37801651 | MS.gene45671:CDS |
TATTCCAAGACACAAGGTTC+TGG | 0.399312 | 4.4:+37803150 | MS.gene45671:CDS |
ATTTAGAGTTTACTGGAGTC+AGG | 0.408619 | 4.4:+37801757 | MS.gene45671:CDS |
TTCTTCAGTGACTCCAGCCT+TGG | 0.412260 | 4.4:-37802744 | None:intergenic |
AAAGTCGAATTCGAATATTC+CGG | 0.417158 | 4.4:-37800754 | None:intergenic |
ATATTCTTGTTGACCAAGGC+TGG | 0.418781 | 4.4:+37802731 | MS.gene45671:CDS |
GTGCAGTTCTATCTGGATAT+GGG | 0.421836 | 4.4:+37801855 | MS.gene45671:CDS |
ACAGCCTTTACAAGAAGATT+AGG | 0.424005 | 4.4:+37802539 | MS.gene45671:CDS |
TTGGTAAGTTGCTTGCATTT+CGG | 0.429654 | 4.4:+37802130 | MS.gene45671:CDS |
TCCACCAGAACCTTGTGTCT+TGG | 0.429802 | 4.4:-37803154 | None:intergenic |
GCTCTTGGACCTGAGCTCTT+GGG | 0.443260 | 4.4:+37802785 | MS.gene45671:CDS |
TTGCGCAAATAAGTATACTT+AGG | 0.455182 | 4.4:-37802938 | None:intergenic |
TGGTAATTTGGTTGATAGGT+TGG | 0.459689 | 4.4:+37800681 | MS.gene45671:CDS |
TAAATTGAACCTGGAAATTG+TGG | 0.465943 | 4.4:-37800481 | None:intergenic |
GTAAAGTATTATTTGTCTCT+CGG | 0.471517 | 4.4:+37802839 | MS.gene45671:CDS |
TGGAGTCAGGAGGGAATGGA+TGG | 0.477188 | 4.4:+37801770 | MS.gene45671:CDS |
CAATGACATCGTGCAAAGTT+CGG | 0.479808 | 4.4:-37802970 | None:intergenic |
AGCTCTCGGTCACTATACTT+TGG | 0.485000 | 4.4:+37801923 | MS.gene45671:CDS |
TATTGTATCTGAGCAGCATT+GGG | 0.494643 | 4.4:-37802901 | None:intergenic |
GGGCTTGAAAGTAAGGATGT+TGG | 0.497791 | 4.4:+37802111 | MS.gene45671:CDS |
CGGTGTGATGAAGAAGAAGA+GGG | 0.499032 | 4.4:+37800565 | MS.gene45671:CDS |
GAAGTTGTTATCTTACAGCT+TGG | 0.512987 | 4.4:+37801815 | MS.gene45671:CDS |
GCTGCGGAGTGACGGGGAGT+TGG | 0.513594 | 4.4:+37801719 | MS.gene45671:CDS |
TCAATCTACTGTCATGAAAG+AGG | 0.513691 | 4.4:+37803273 | MS.gene45671:CDS |
CATTCTCCTCATCCCATCTC+GGG | 0.520803 | 4.4:-37802226 | None:intergenic |
GGAAGAGAAGAACCCACATC+AGG | 0.521378 | 4.4:-37800523 | None:intergenic |
TGTTGGGTCTTGTAGTGAAG+TGG | 0.522719 | 4.4:-37800404 | None:intergenic |
GCATTCTCCTCATCCCATCT+CGG | 0.523104 | 4.4:-37802227 | None:intergenic |
ACTTAGGGGTTCAAAATGAC+GGG | 0.524701 | 4.4:+37802476 | MS.gene45671:CDS |
TTACTGGAGTCAGGAGGGAA+TGG | 0.529512 | 4.4:+37801766 | MS.gene45671:CDS |
AGCATAGTACATAAGCTTGA+AGG | 0.532239 | 4.4:+37802812 | MS.gene45671:CDS |
TAACCATGATACCTGATAAG+TGG | 0.532585 | 4.4:-37800820 | None:intergenic |
GGGTGTGGATAGAAGAATGA+GGG | 0.533182 | 4.4:-37800231 | None:intergenic |
GGATTACCCGAGATGGGATG+AGG | 0.534187 | 4.4:+37802220 | MS.gene45671:CDS |
AGGCTGTAAGTGAGTAGAGT+GGG | 0.534347 | 4.4:-37802523 | None:intergenic |
CAGGCCTAATCTTCTTGTAA+AGG | 0.535894 | 4.4:-37802543 | None:intergenic |
TCGGTGTGATGAAGAAGAAG+AGG | 0.537290 | 4.4:+37800564 | MS.gene45671:CDS |
ATCTCCAAGTGATCCTGATG+TGG | 0.539338 | 4.4:+37800510 | MS.gene45671:CDS |
AATTTGGTTGATAGGTTGGG+TGG | 0.539654 | 4.4:+37800685 | MS.gene45671:CDS |
ATGCTGCATCCCAAGAGCTC+AGG | 0.539681 | 4.4:-37802794 | None:intergenic |
GAACCCACATCAGGATCACT+TGG | 0.546534 | 4.4:-37800514 | None:intergenic |
AAATTGAACCTGGAAATTGT+GGG | 0.548614 | 4.4:-37800480 | None:intergenic |
TATTATGGGATTACCCGAGA+TGG | 0.548665 | 4.4:+37802213 | MS.gene45671:CDS |
TCGTAGGAAGGTTACTGAAG+AGG | 0.548898 | 4.4:+37800612 | MS.gene45671:CDS |
AGCTATTGAGATTCGTAGGA+AGG | 0.552352 | 4.4:+37800600 | MS.gene45671:CDS |
TCCAAGACACAAGGTTCTGG+TGG | 0.555314 | 4.4:+37803153 | MS.gene45671:CDS |
GGCGTACGTCTTCGGCAACT+GGG | 0.557742 | 4.4:+37802860 | MS.gene45671:CDS |
GTATTGTATCTGAGCAGCAT+TGG | 0.561020 | 4.4:-37802902 | None:intergenic |
ATGCTGCAGGCCATCAATTG+TGG | 0.563869 | 4.4:-37802153 | None:intergenic |
ATTATGGGATTACCCGAGAT+GGG | 0.565768 | 4.4:+37802214 | MS.gene45671:CDS |
GGATATGGGTTTAGATGCGA+AGG | 0.566566 | 4.4:+37801869 | MS.gene45671:CDS |
GACTTAGGGGTTCAAAATGA+CGG | 0.569313 | 4.4:+37802475 | MS.gene45671:CDS |
TGGAAGCTATTGAGATTCGT+AGG | 0.571096 | 4.4:+37800596 | MS.gene45671:CDS |
TACTTATTTGCGCAAAACCA+TGG | 0.571905 | 4.4:+37802946 | MS.gene45671:CDS |
TACGTCTGGGCTGTAGATTG+GGG | 0.575774 | 4.4:-37803307 | None:intergenic |
AATGCTTACAATTAAACCAA+TGG | 0.584764 | 4.4:+37802245 | MS.gene45671:CDS |
TGTTAAGGGAGAGTTTATTG+GGG | 0.585317 | 4.4:+37801665 | MS.gene45671:CDS |
TAGTACAGATACTTAACAAG+AGG | 0.586183 | 4.4:-37802192 | None:intergenic |
AGAGATGACTATTGTGCCAA+AGG | 0.586961 | 4.4:+37802284 | MS.gene45671:CDS |
AAGTCAACACAAAAGACCAT+TGG | 0.588974 | 4.4:-37802261 | None:intergenic |
AGGGTGTGGATAGAAGAATG+AGG | 0.592471 | 4.4:-37800232 | None:intergenic |
GATTGAGCGTAAATTGAACC+TGG | 0.592608 | 4.4:-37800490 | None:intergenic |
TGGAATAATTCGACCCTCGA+GGG | 0.595008 | 4.4:-37803134 | None:intergenic |
GGGGATGCAATGTTAAAGAG+TGG | 0.597352 | 4.4:+37801684 | MS.gene45671:CDS |
AAGGCTGTAAGTGAGTAGAG+TGG | 0.599774 | 4.4:-37802524 | None:intergenic |
TCTTGTAGTGAAGTGGATGA+AGG | 0.600616 | 4.4:-37800397 | None:intergenic |
TTACAAGAAGATTAGGCCTG+TGG | 0.602463 | 4.4:+37802546 | MS.gene45671:CDS |
GGATGGGTTATGTTGTGAGT+CGG | 0.603970 | 4.4:+37801787 | MS.gene45671:CDS |
CCTGCAGCATTGAAGAACAA+TGG | 0.605000 | 4.4:+37802166 | MS.gene45671:CDS |
AGAGTTTACTGGAGTCAGGA+GGG | 0.605540 | 4.4:+37801761 | MS.gene45671:CDS |
TCTCCAAGTGATCCTGATGT+GGG | 0.605585 | 4.4:+37800511 | MS.gene45671:CDS |
CACTGAAGAAAATATTCCAA+AGG | 0.608783 | 4.4:+37802757 | MS.gene45671:CDS |
TAGAGTTTACTGGAGTCAGG+AGG | 0.614457 | 4.4:+37801760 | MS.gene45671:CDS |
TGTGGATAGAAGAATGAGGG+AGG | 0.617683 | 4.4:-37800228 | None:intergenic |
ATCGTGCAAAGTTCGGACCA+TGG | 0.622950 | 4.4:-37802963 | None:intergenic |
GGTCATATTCTTGTTGACCA+AGG | 0.622996 | 4.4:+37802727 | MS.gene45671:intron |
AATTGAACCTGGAAATTGTG+GGG | 0.623051 | 4.4:-37800479 | None:intergenic |
TTTAAAGAAGCAATGCGGAA+GGG | 0.624488 | 4.4:+37800637 | MS.gene45671:CDS |
AAAATGAGCTTAGCTATCTG+AGG | 0.626607 | 4.4:-37801582 | None:intergenic |
ACGATGTCATTGAGTTTCCG+AGG | 0.627471 | 4.4:+37802981 | MS.gene45671:CDS |
AAGCTGTAAGATAACAACTT+CGG | 0.628272 | 4.4:-37801813 | None:intergenic |
CCGTGTTGAGTGGTTGAAGT+CGG | 0.637384 | 4.4:+37801638 | MS.gene45671:CDS |
CTATAAGGAACCGTGTTGAG+TGG | 0.637525 | 4.4:+37801628 | MS.gene45671:CDS |
TCGAATTATTCCAAGACACA+AGG | 0.638216 | 4.4:+37803144 | MS.gene45671:CDS |
CCGACTTCAACCACTCAACA+CGG | 0.641986 | 4.4:-37801638 | None:intergenic |
GGAGTCAGGAGGGAATGGAT+GGG | 0.644138 | 4.4:+37801771 | MS.gene45671:CDS |
TTGGAATAATTCGACCCTCG+AGG | 0.648302 | 4.4:-37803135 | None:intergenic |
TTTGGAAGAAATGAGCCGAA+AGG | 0.661203 | 4.4:+37801941 | MS.gene45671:CDS |
AGATGAAGAATTTAACAACA+TGG | 0.681193 | 4.4:+37803219 | MS.gene45671:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAAAAATTATGTATCTA+TGG | - | chr4.4:37803024-37803043 | None:intergenic | 10.0% |
!! | TTCATAAATAAAATTTCCAA+TGG | + | chr4.4:37802378-37802397 | MS.gene45671:intron | 15.0% |
!!! | AATTTTTGACAAACTTTATA+GGG | + | chr4.4:37801970-37801989 | MS.gene45671:intron | 15.0% |
!!! | TAATTTTTGACAAACTTTAT+AGG | + | chr4.4:37801969-37801988 | MS.gene45671:intron | 15.0% |
!! | AATTACTTATACTGGTAATT+TGG | + | chr4.4:37800669-37800688 | MS.gene45671:CDS | 20.0% |
!! | CTAAAAAATTTACATACCTT+TGG | - | chr4.4:37802303-37802322 | None:intergenic | 20.0% |
!! | TCAAAAATTAATGTACCTTT+CGG | - | chr4.4:37801959-37801978 | None:intergenic | 20.0% |
!! | TTAAGTATCTGTACTATTAT+GGG | + | chr4.4:37802199-37802218 | MS.gene45671:CDS | 20.0% |
!! | TTGATTACTTGAAAGAATTT+GGG | + | chr4.4:37802091-37802110 | MS.gene45671:CDS | 20.0% |
!!! | AAATTTGGAATTACTTATAC+TGG | + | chr4.4:37800661-37800680 | MS.gene45671:CDS | 20.0% |
!!! | AAGTTTTTGTATTTTGATTG+TGG | + | chr4.4:37801513-37801532 | MS.gene45671:intron | 20.0% |
!!! | ATTTAAAGTTGAATATGCAA+TGG | - | chr4.4:37803076-37803095 | None:intergenic | 20.0% |
!!! | GAATTCGACTTTTAATTTAA+GGG | + | chr4.4:37800765-37800784 | MS.gene45671:CDS | 20.0% |
!!! | TGTTACATATTTTATCATGA+AGG | + | chr4.4:37802438-37802457 | MS.gene45671:intron | 20.0% |
!!! | TTTTATTGTTTTGAAGTTGT+TGG | + | chr4.4:37801032-37801051 | MS.gene45671:intron | 20.0% |
! | AATGCTTACAATTAAACCAA+TGG | + | chr4.4:37802245-37802264 | MS.gene45671:CDS | 25.0% |
! | ACTCTAATAAAAAATGTGTC+CGG | - | chr4.4:37800996-37801015 | None:intergenic | 25.0% |
! | AGAGTGAATGTAATCAAAAT+AGG | - | chr4.4:37801219-37801238 | None:intergenic | 25.0% |
! | AGATGAAGAATTTAACAACA+TGG | + | chr4.4:37803219-37803238 | MS.gene45671:CDS | 25.0% |
! | ATGCAACAATTGTAAATTTC+AGG | + | chr4.4:37802068-37802087 | MS.gene45671:intron | 25.0% |
! | GATTTCTTCAATTCTTTAGA+TGG | + | chr4.4:37801535-37801554 | MS.gene45671:intron | 25.0% |
! | GCTTCAGAAAAATAACTTAA+TGG | - | chr4.4:37802607-37802626 | None:intergenic | 25.0% |
! | GTTAAGTATCTGTACTATTA+TGG | + | chr4.4:37802198-37802217 | MS.gene45671:CDS | 25.0% |
! | GTTGATTACTTGAAAGAATT+TGG | + | chr4.4:37802090-37802109 | MS.gene45671:CDS | 25.0% |
! | TCAAAATATCATTGATACCT+CGG | - | chr4.4:37803001-37803020 | None:intergenic | 25.0% |
! | TTATCTATGAAGAATTGACA+CGG | + | chr4.4:37800880-37800899 | MS.gene45671:intron | 25.0% |
! | TTTAGGAAAATCAAAAACCA+TGG | - | chr4.4:37801904-37801923 | None:intergenic | 25.0% |
!! | AATGGTAACAAATTTTGTAG+CGG | - | chr4.4:37802589-37802608 | None:intergenic | 25.0% |
!! | ATTGTCAGTATTTTATCATC+AGG | - | chr4.4:37802418-37802437 | None:intergenic | 25.0% |
!! | GTAAAGTATTATTTGTCTCT+CGG | + | chr4.4:37802839-37802858 | MS.gene45671:CDS | 25.0% |
!! | GTTGATTATTTAGAGTTTAC+TGG | + | chr4.4:37801750-37801769 | MS.gene45671:CDS | 25.0% |
!!! | CGAATTCGACTTTTAATTTA+AGG | + | chr4.4:37800764-37800783 | MS.gene45671:CDS | 25.0% |
!!! | TAAAGTTTTTTCAGGACTTA+GGG | + | chr4.4:37802461-37802480 | MS.gene45671:CDS | 25.0% |
!!! | TCAAAATAGGCATTGAAATT+TGG | - | chr4.4:37801206-37801225 | None:intergenic | 25.0% |
!!! | TGTTAGTGTTTTTTTGTGTA+AGG | - | chr4.4:37800372-37800391 | None:intergenic | 25.0% |
AAAGAAAAAAGACATACCAC+AGG | - | chr4.4:37802565-37802584 | None:intergenic | 30.0% | |
AAAGTCGAATTCGAATATTC+CGG | - | chr4.4:37800757-37800776 | None:intergenic | 30.0% | |
AAATTGAACCTGGAAATTGT+GGG | - | chr4.4:37800483-37800502 | None:intergenic | 30.0% | |
AAGCTGTAAGATAACAACTT+CGG | - | chr4.4:37801816-37801835 | None:intergenic | 30.0% | |
AATCAGAGTGATAAACTTTG+TGG | - | chr4.4:37802639-37802658 | None:intergenic | 30.0% | |
ATACTGGTAATTTGGTTGAT+AGG | + | chr4.4:37800677-37800696 | MS.gene45671:CDS | 30.0% | |
CACTGAAGAAAATATTCCAA+AGG | + | chr4.4:37802757-37802776 | MS.gene45671:CDS | 30.0% | |
TAAATTGAACCTGGAAATTG+TGG | - | chr4.4:37800484-37800503 | None:intergenic | 30.0% | |
TAGTACAGATACTTAACAAG+AGG | - | chr4.4:37802195-37802214 | None:intergenic | 30.0% | |
TGACAGTAGATTGAAGTTTA+TGG | - | chr4.4:37803267-37803286 | None:intergenic | 30.0% | |
TGCTAATTTGAAAAGATTGC+CGG | + | chr4.4:37800735-37800754 | MS.gene45671:CDS | 30.0% | |
TTATAAACTGTCTGATCAAG+AGG | + | chr4.4:37802664-37802683 | MS.gene45671:intron | 30.0% | |
TTGCGCAAATAAGTATACTT+AGG | - | chr4.4:37802941-37802960 | None:intergenic | 30.0% | |
TTGTTAAGGGAGAGTTTATT+GGG | + | chr4.4:37801664-37801683 | MS.gene45671:CDS | 30.0% | |
TTTGTTAAGGGAGAGTTTAT+TGG | + | chr4.4:37801663-37801682 | MS.gene45671:CDS | 30.0% | |
! | TGCGTTAAATTATTGATAGC+AGG | + | chr4.4:37801453-37801472 | MS.gene45671:intron | 30.0% |
!! | AGGTTTTTAAAGAAGCAATG+CGG | + | chr4.4:37800632-37800651 | MS.gene45671:CDS | 30.0% |
!! | TGAGTTTGCTTGTTGTATAT+AGG | + | chr4.4:37802706-37802725 | MS.gene45671:intron | 30.0% |
!! | TTTGATTTTCCTAAAGCTCT+CGG | + | chr4.4:37801909-37801928 | MS.gene45671:CDS | 30.0% |
!!! | AAAGTTTTTTCAGGACTTAG+GGG | + | chr4.4:37802462-37802481 | MS.gene45671:CDS | 30.0% |
!!! | AGTTTGATTTTTTCTTCGTG+AGG | - | chr4.4:37800430-37800449 | None:intergenic | 30.0% |
!!! | CATGAAGGTAAAGTTTTTTC+AGG | + | chr4.4:37802453-37802472 | MS.gene45671:intron | 30.0% |
!!! | GTAAAGTTTTTTCAGGACTT+AGG | + | chr4.4:37802460-37802479 | MS.gene45671:CDS | 30.0% |
AAAATGAGCTTAGCTATCTG+AGG | - | chr4.4:37801585-37801604 | None:intergenic | 35.0% | |
AAGTATGAGAGAAGACAACA+AGG | - | chr4.4:37802018-37802037 | None:intergenic | 35.0% | |
AAGTCAACACAAAAGACCAT+TGG | - | chr4.4:37802264-37802283 | None:intergenic | 35.0% | |
AATTGAACCTGGAAATTGTG+GGG | - | chr4.4:37800482-37800501 | None:intergenic | 35.0% | |
ACAGCCTTTACAAGAAGATT+AGG | + | chr4.4:37802539-37802558 | MS.gene45671:CDS | 35.0% | |
ACTGTCAGATTTCATTCCAA+CGG | - | chr4.4:37801183-37801202 | None:intergenic | 35.0% | |
AGAAGAAGAGGGAATGATTA+TGG | + | chr4.4:37800576-37800595 | MS.gene45671:CDS | 35.0% | |
AGAATTTGGGCTTGAAAGTA+AGG | + | chr4.4:37802104-37802123 | MS.gene45671:CDS | 35.0% | |
AGCATAGTACATAAGCTTGA+AGG | + | chr4.4:37802812-37802831 | MS.gene45671:CDS | 35.0% | |
ATACACACAACACAACAAGT+TGG | - | chr4.4:37801093-37801112 | None:intergenic | 35.0% | |
ATTCCAAAGGTTATAGCTCT+TGG | + | chr4.4:37802770-37802789 | MS.gene45671:CDS | 35.0% | |
GAAGTTGTTATCTTACAGCT+TGG | + | chr4.4:37801815-37801834 | MS.gene45671:CDS | 35.0% | |
GGAAACATAACAGAAACCAT+TGG | - | chr4.4:37802397-37802416 | None:intergenic | 35.0% | |
GTTGTGTGTATTGTTGGAAA+TGG | + | chr4.4:37801102-37801121 | MS.gene45671:intron | 35.0% | |
TAACCATGATACCTGATAAG+TGG | - | chr4.4:37800823-37800842 | None:intergenic | 35.0% | |
TACTTATTTGCGCAAAACCA+TGG | + | chr4.4:37802946-37802965 | MS.gene45671:CDS | 35.0% | |
TATTGTATCTGAGCAGCATT+GGG | - | chr4.4:37802904-37802923 | None:intergenic | 35.0% | |
TCAATCTACTGTCATGAAAG+AGG | + | chr4.4:37803273-37803292 | MS.gene45671:CDS | 35.0% | |
TCGAATTATTCCAAGACACA+AGG | + | chr4.4:37803144-37803163 | MS.gene45671:CDS | 35.0% | |
TGAGTCTCATCACTTTATGT+GGG | + | chr4.4:37801259-37801278 | MS.gene45671:intron | 35.0% | |
TGTGATCATTGGATCGAAAT+CGG | - | chr4.4:37801422-37801441 | None:intergenic | 35.0% | |
TGTTAAGGGAGAGTTTATTG+GGG | + | chr4.4:37801665-37801684 | MS.gene45671:CDS | 35.0% | |
TGTTGTGTTGTGTGTATTGT+TGG | + | chr4.4:37801096-37801115 | MS.gene45671:intron | 35.0% | |
TTGGTAAGTTGCTTGCATTT+CGG | + | chr4.4:37802130-37802149 | MS.gene45671:CDS | 35.0% | |
TTTAAAGAAGCAATGCGGAA+GGG | + | chr4.4:37800637-37800656 | MS.gene45671:CDS | 35.0% | |
! | ATTTAGAGTTTACTGGAGTC+AGG | + | chr4.4:37801757-37801776 | MS.gene45671:CDS | 35.0% |
! | CTAGCACTCACTCTTTTATT+CGG | - | chr4.4:37801321-37801340 | None:intergenic | 35.0% |
! | CTCAGCAGATTAGTTAATTC+AGG | - | chr4.4:37802690-37802709 | None:intergenic | 35.0% |
! | GATTTTGCATTGTGTCTTCT+GGG | - | chr4.4:37800328-37800347 | None:intergenic | 35.0% |
! | GGGAAATTTTACAAGCATGT+TGG | - | chr4.4:37802506-37802525 | None:intergenic | 35.0% |
! | TGATTTTGCATTGTGTCTTC+TGG | - | chr4.4:37800329-37800348 | None:intergenic | 35.0% |
! | TGGGGTTCTTTTTCTTACTA+AGG | - | chr4.4:37800464-37800483 | None:intergenic | 35.0% |
! | TTGAAGTCGGTGTTTGTTAA+GGG | + | chr4.4:37801651-37801670 | MS.gene45671:CDS | 35.0% |
!! | AAGCTCATTTTGATGTCAAG+AGG | + | chr4.4:37801594-37801613 | MS.gene45671:CDS | 35.0% |
!! | AGCTCATTTTGATGTCAAGA+GGG | + | chr4.4:37801595-37801614 | MS.gene45671:CDS | 35.0% |
!! | GGTAATTTGGTTGATAGGTT+GGG | + | chr4.4:37800682-37800701 | MS.gene45671:CDS | 35.0% |
!! | TGGTAATTTGGTTGATAGGT+TGG | + | chr4.4:37800681-37800700 | MS.gene45671:CDS | 35.0% |
!! | TTTTAAAGAAGCAATGCGGA+AGG | + | chr4.4:37800636-37800655 | MS.gene45671:CDS | 35.0% |
!!! | ATTTTTTCTTCGTGAGGTGT+TGG | - | chr4.4:37800424-37800443 | None:intergenic | 35.0% |
!!! | TTTTTTCTTCGTGAGGTGTT+GGG | - | chr4.4:37800423-37800442 | None:intergenic | 35.0% |
AAAAGAACCCCACAATTTCC+AGG | + | chr4.4:37800472-37800491 | MS.gene45671:CDS | 40.0% | |
ACTTAGGGGTTCAAAATGAC+GGG | + | chr4.4:37802476-37802495 | MS.gene45671:CDS | 40.0% | |
AGAGATGACTATTGTGCCAA+AGG | + | chr4.4:37802284-37802303 | MS.gene45671:CDS | 40.0% | |
AGCTATTGAGATTCGTAGGA+AGG | + | chr4.4:37800600-37800619 | MS.gene45671:CDS | 40.0% | |
ATATTCTTGTTGACCAAGGC+TGG | + | chr4.4:37802731-37802750 | MS.gene45671:CDS | 40.0% | |
ATTAGAGTTGTCTGTGCAGA+AGG | + | chr4.4:37801008-37801027 | MS.gene45671:intron | 40.0% | |
ATTATGGGATTACCCGAGAT+GGG | + | chr4.4:37802214-37802233 | MS.gene45671:CDS | 40.0% | |
CAATGACATCGTGCAAAGTT+CGG | - | chr4.4:37802973-37802992 | None:intergenic | 40.0% | |
CAGAGTGATAAACTTTGTGG+TGG | - | chr4.4:37802636-37802655 | None:intergenic | 40.0% | |
CAGGCCTAATCTTCTTGTAA+AGG | - | chr4.4:37802546-37802565 | None:intergenic | 40.0% | |
CTTCTTCATCACACCGAAAA+AGG | - | chr4.4:37800561-37800580 | None:intergenic | 40.0% | |
GACTTAGGGGTTCAAAATGA+CGG | + | chr4.4:37802475-37802494 | MS.gene45671:CDS | 40.0% | |
GAGGGAAACTTGAGTCTATA+AGG | + | chr4.4:37801613-37801632 | MS.gene45671:CDS | 40.0% | |
GATTGAGCGTAAATTGAACC+TGG | - | chr4.4:37800493-37800512 | None:intergenic | 40.0% | |
GGTCATATTCTTGTTGACCA+AGG | + | chr4.4:37802727-37802746 | MS.gene45671:intron | 40.0% | |
GTATTGTATCTGAGCAGCAT+TGG | - | chr4.4:37802905-37802924 | None:intergenic | 40.0% | |
GTCAACACATCTGTGATCAT+TGG | - | chr4.4:37801433-37801452 | None:intergenic | 40.0% | |
GTGAGTCTCATCACTTTATG+TGG | + | chr4.4:37801258-37801277 | MS.gene45671:intron | 40.0% | |
GTGCAGTTCTATCTGGATAT+GGG | + | chr4.4:37801855-37801874 | MS.gene45671:CDS | 40.0% | |
TACCGATGTCAATGTGTCAA+TGG | - | chr4.4:37800918-37800937 | None:intergenic | 40.0% | |
TATTATGGGATTACCCGAGA+TGG | + | chr4.4:37802213-37802232 | MS.gene45671:CDS | 40.0% | |
TATTCCAAGACACAAGGTTC+TGG | + | chr4.4:37803150-37803169 | MS.gene45671:CDS | 40.0% | |
TCACTCATTCAGCACATATG+TGG | + | chr4.4:37801157-37801176 | MS.gene45671:intron | 40.0% | |
TCTTGTAGTGAAGTGGATGA+AGG | - | chr4.4:37800400-37800419 | None:intergenic | 40.0% | |
TGGAAGCTATTGAGATTCGT+AGG | + | chr4.4:37800596-37800615 | MS.gene45671:CDS | 40.0% | |
TGTGCAGTTCTATCTGGATA+TGG | + | chr4.4:37801854-37801873 | MS.gene45671:CDS | 40.0% | |
TTACAAGAAGATTAGGCCTG+TGG | + | chr4.4:37802546-37802565 | MS.gene45671:CDS | 40.0% | |
TTTGGAAGAAATGAGCCGAA+AGG | + | chr4.4:37801941-37801960 | MS.gene45671:CDS | 40.0% | |
! | AATGCGTCGATGACGATTAT+TGG | - | chr4.4:37801138-37801157 | None:intergenic | 40.0% |
! | CTCCACTGAGTAACCTTTTT+CGG | + | chr4.4:37800545-37800564 | MS.gene45671:CDS | 40.0% |
! | GGTTTAGATGCGAAGGATTT+TGG | + | chr4.4:37801876-37801895 | MS.gene45671:CDS | 40.0% |
! | GTGGAGATAATGTTTTGCTG+CGG | + | chr4.4:37801703-37801722 | MS.gene45671:CDS | 40.0% |
! | GTTGAAGTCGGTGTTTGTTA+AGG | + | chr4.4:37801650-37801669 | MS.gene45671:CDS | 40.0% |
!! | AATTTGGTTGATAGGTTGGG+TGG | + | chr4.4:37800685-37800704 | MS.gene45671:CDS | 40.0% |
!! | GCAATTCTCTTGCTGTTATC+AGG | + | chr4.4:37803098-37803117 | MS.gene45671:intron | 40.0% |
!! | TTTTTCAGCTATTCCCTCGA+GGG | + | chr4.4:37803121-37803140 | MS.gene45671:CDS | 40.0% |
!!! | CGTTTTGGTGTTGTTCGTTT+GGG | - | chr4.4:37800297-37800316 | None:intergenic | 40.0% |
!!! | GGTGAGTTTTGGGTTTTTGA+GGG | - | chr4.4:37800254-37800273 | None:intergenic | 40.0% |
!!! | TCGTTTTGGTGTTGTTCGTT+TGG | - | chr4.4:37800298-37800317 | None:intergenic | 40.0% |
!!! | TGGTGAGTTTTGGGTTTTTG+AGG | - | chr4.4:37800255-37800274 | None:intergenic | 40.0% |
!!! | TTCTGGGAATTGGTTCGTTT+TGG | - | chr4.4:37800312-37800331 | None:intergenic | 40.0% |
AAGGCTGTAAGTGAGTAGAG+TGG | - | chr4.4:37802527-37802546 | None:intergenic | 45.0% | |
ACGATGTCATTGAGTTTCCG+AGG | + | chr4.4:37802981-37803000 | MS.gene45671:CDS | 45.0% | |
AGAGTTTACTGGAGTCAGGA+GGG | + | chr4.4:37801761-37801780 | MS.gene45671:CDS | 45.0% | |
AGCTCTCGGTCACTATACTT+TGG | + | chr4.4:37801923-37801942 | MS.gene45671:CDS | 45.0% | |
AGGCTGTAAGTGAGTAGAGT+GGG | - | chr4.4:37802526-37802545 | None:intergenic | 45.0% | |
AGGGTGTGGATAGAAGAATG+AGG | - | chr4.4:37800235-37800254 | None:intergenic | 45.0% | |
ATCTCCAAGTGATCCTGATG+TGG | + | chr4.4:37800510-37800529 | MS.gene45671:CDS | 45.0% | |
CACCGAAAAAGGTTACTCAG+TGG | - | chr4.4:37800550-37800569 | None:intergenic | 45.0% | |
CCATTGTTCTTCAATGCTGC+AGG | - | chr4.4:37802169-37802188 | None:intergenic | 45.0% | |
CGAAAAAGGTTACTCAGTGG+AGG | - | chr4.4:37800547-37800566 | None:intergenic | 45.0% | |
CGCCATTGACACATTGACAT+CGG | + | chr4.4:37800913-37800932 | MS.gene45671:intron | 45.0% | |
CGGTGTGATGAAGAAGAAGA+GGG | + | chr4.4:37800565-37800584 | MS.gene45671:CDS | 45.0% | |
CTATAAGGAACCGTGTTGAG+TGG | + | chr4.4:37801628-37801647 | MS.gene45671:CDS | 45.0% | |
GATTCGTGTGCAGTTCTATC+TGG | + | chr4.4:37801848-37801867 | MS.gene45671:CDS | 45.0% | |
GCAATGCGGAAGGGTAAATT+TGG | + | chr4.4:37800646-37800665 | MS.gene45671:CDS | 45.0% | |
GGATATGGGTTTAGATGCGA+AGG | + | chr4.4:37801869-37801888 | MS.gene45671:CDS | 45.0% | |
GGGCTTGAAAGTAAGGATGT+TGG | + | chr4.4:37802111-37802130 | MS.gene45671:CDS | 45.0% | |
GGGGATGCAATGTTAAAGAG+TGG | + | chr4.4:37801684-37801703 | MS.gene45671:CDS | 45.0% | |
GGGTGTGGATAGAAGAATGA+GGG | - | chr4.4:37800234-37800253 | None:intergenic | 45.0% | |
GGTCCAAGAGCTATAACCTT+TGG | - | chr4.4:37802776-37802795 | None:intergenic | 45.0% | |
GTATAGTGACCGAGAGCTTT+AGG | - | chr4.4:37801921-37801940 | None:intergenic | 45.0% | |
TAGAGTTTACTGGAGTCAGG+AGG | + | chr4.4:37801760-37801779 | MS.gene45671:CDS | 45.0% | |
TCGGTGTGATGAAGAAGAAG+AGG | + | chr4.4:37800564-37800583 | MS.gene45671:CDS | 45.0% | |
TCGTAGGAAGGTTACTGAAG+AGG | + | chr4.4:37800612-37800631 | MS.gene45671:CDS | 45.0% | |
TCTCCAAGTGATCCTGATGT+GGG | + | chr4.4:37800511-37800530 | MS.gene45671:CDS | 45.0% | |
TGCATTTCGGCCACAATTGA+TGG | + | chr4.4:37802143-37802162 | MS.gene45671:CDS | 45.0% | |
TGGAATAATTCGACCCTCGA+GGG | - | chr4.4:37803137-37803156 | None:intergenic | 45.0% | |
TGTGGATAGAAGAATGAGGG+AGG | - | chr4.4:37800231-37800250 | None:intergenic | 45.0% | |
TGTTCGACACTACACACATG+TGG | - | chr4.4:37800973-37800992 | None:intergenic | 45.0% | |
TTACGTCTGGGCTGTAGATT+GGG | - | chr4.4:37803311-37803330 | None:intergenic | 45.0% | |
TTGGAATAATTCGACCCTCG+AGG | - | chr4.4:37803138-37803157 | None:intergenic | 45.0% | |
! | AATGTTTTGCTGCGGAGTGA+CGG | + | chr4.4:37801711-37801730 | MS.gene45671:CDS | 45.0% |
! | ATGTGTGTAGTGTCGAACAC+CGG | + | chr4.4:37800974-37800993 | MS.gene45671:intron | 45.0% |
! | CCTGCAGCATTGAAGAACAA+TGG | + | chr4.4:37802166-37802185 | MS.gene45671:CDS | 45.0% |
! | GCATTGTGTCTTCTGGGAAT+TGG | - | chr4.4:37800322-37800341 | None:intergenic | 45.0% |
! | TGTTGGGTCTTGTAGTGAAG+TGG | - | chr4.4:37800407-37800426 | None:intergenic | 45.0% |
!! | CTCAAGTTGTGCCACTTATC+AGG | + | chr4.4:37800809-37800828 | MS.gene45671:CDS | 45.0% |
!! | GGATGGGTTATGTTGTGAGT+CGG | + | chr4.4:37801787-37801806 | MS.gene45671:CDS | 45.0% |
!! | GTGCCACTTATCAGGTATCA+TGG | + | chr4.4:37800817-37800836 | MS.gene45671:intron | 45.0% |
!! | GTTTTTCAGCTATTCCCTCG+AGG | + | chr4.4:37803120-37803139 | MS.gene45671:CDS | 45.0% |
!! | TGACGATGGTGGTGAGTTTT+GGG | - | chr4.4:37800264-37800283 | None:intergenic | 45.0% |
!! | TTGACGATGGTGGTGAGTTT+TGG | - | chr4.4:37800265-37800284 | None:intergenic | 45.0% |
!!! | GGTGTTGTTCGTTTGGGTTT+TGG | - | chr4.4:37800291-37800310 | None:intergenic | 45.0% |
!!! | GTTTTGGGTTTTTGAGGGTG+TGG | - | chr4.4:37800249-37800268 | None:intergenic | 45.0% |
ATCGTGCAAAGTTCGGACCA+TGG | - | chr4.4:37802966-37802985 | None:intergenic | 50.0% | |
ATGCTGCAGGCCATCAATTG+TGG | - | chr4.4:37802156-37802175 | None:intergenic | 50.0% | |
CATTCTCCTCATCCCATCTC+GGG | - | chr4.4:37802229-37802248 | None:intergenic | 50.0% | |
CCGACTTCAACCACTCAACA+CGG | - | chr4.4:37801641-37801660 | None:intergenic | 50.0% | |
CCGTGTTGAGTGGTTGAAGT+CGG | + | chr4.4:37801638-37801657 | MS.gene45671:CDS | 50.0% | |
GAACCCACATCAGGATCACT+TGG | - | chr4.4:37800517-37800536 | None:intergenic | 50.0% | |
GCATTCTCCTCATCCCATCT+CGG | - | chr4.4:37802230-37802249 | None:intergenic | 50.0% | |
GGAAGAGAAGAACCCACATC+AGG | - | chr4.4:37800526-37800545 | None:intergenic | 50.0% | |
TACGTCTGGGCTGTAGATTG+GGG | - | chr4.4:37803310-37803329 | None:intergenic | 50.0% | |
TCCACCAGAACCTTGTGTCT+TGG | - | chr4.4:37803157-37803176 | None:intergenic | 50.0% | |
TTACTGGAGTCAGGAGGGAA+TGG | + | chr4.4:37801766-37801785 | MS.gene45671:CDS | 50.0% | |
TTCAGCACATATGTGGCCGT+TGG | + | chr4.4:37801164-37801183 | MS.gene45671:intron | 50.0% | |
TTCTTCAGTGACTCCAGCCT+TGG | - | chr4.4:37802747-37802766 | None:intergenic | 50.0% | |
! | ATGTTTTGCTGCGGAGTGAC+GGG | + | chr4.4:37801712-37801731 | MS.gene45671:CDS | 50.0% |
! | TCCAAGACACAAGGTTCTGG+TGG | + | chr4.4:37803153-37803172 | MS.gene45671:CDS | 50.0% |
!! | GTTTTGGCAGTTGACGATGG+TGG | - | chr4.4:37800275-37800294 | None:intergenic | 50.0% |
!! | TGCGAAGGATTTTGGCACCA+TGG | + | chr4.4:37801884-37801903 | MS.gene45671:CDS | 50.0% |
!! | TGGGTTTTGGCAGTTGACGA+TGG | - | chr4.4:37800278-37800297 | None:intergenic | 50.0% |
AGCTCTTGGACCTGAGCTCT+TGG | + | chr4.4:37802784-37802803 | MS.gene45671:CDS | 55.0% | |
ATGCTGCATCCCAAGAGCTC+AGG | - | chr4.4:37802797-37802816 | None:intergenic | 55.0% | |
GCTCTTGGACCTGAGCTCTT+GGG | + | chr4.4:37802785-37802804 | MS.gene45671:CDS | 55.0% | |
GGAGTCAGGAGGGAATGGAT+GGG | + | chr4.4:37801771-37801790 | MS.gene45671:CDS | 55.0% | |
GGATTACCCGAGATGGGATG+AGG | + | chr4.4:37802220-37802239 | MS.gene45671:CDS | 55.0% | |
TGGAGTCAGGAGGGAATGGA+TGG | + | chr4.4:37801770-37801789 | MS.gene45671:CDS | 55.0% | |
TGTCTCTCGGCGTACGTCTT+CGG | + | chr4.4:37802852-37802871 | MS.gene45671:CDS | 55.0% | |
! | TGTTTTGCTGCGGAGTGACG+GGG | + | chr4.4:37801713-37801732 | MS.gene45671:CDS | 55.0% |
GGCGTACGTCTTCGGCAACT+GGG | + | chr4.4:37802860-37802879 | MS.gene45671:CDS | 60.0% | |
CGGCGTACGTCTTCGGCAAC+TGG | + | chr4.4:37802859-37802878 | MS.gene45671:CDS | 65.0% | |
! | GCTGCGGAGTGACGGGGAGT+TGG | + | chr4.4:37801719-37801738 | MS.gene45671:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 37800196 | 37803330 | 37800196 | ID=MS.gene45671 |
chr4.4 | mRNA | 37800196 | 37803330 | 37800196 | ID=MS.gene45671.t1;Parent=MS.gene45671 |
chr4.4 | exon | 37800196 | 37800830 | 37800196 | ID=MS.gene45671.t1.exon1;Parent=MS.gene45671.t1 |
chr4.4 | CDS | 37800196 | 37800830 | 37800196 | ID=cds.MS.gene45671.t1;Parent=MS.gene45671.t1 |
chr4.4 | exon | 37801554 | 37801962 | 37801554 | ID=MS.gene45671.t1.exon2;Parent=MS.gene45671.t1 |
chr4.4 | CDS | 37801554 | 37801962 | 37801554 | ID=cds.MS.gene45671.t1;Parent=MS.gene45671.t1 |
chr4.4 | exon | 37802090 | 37802305 | 37802090 | ID=MS.gene45671.t1.exon3;Parent=MS.gene45671.t1 |
chr4.4 | CDS | 37802090 | 37802305 | 37802090 | ID=cds.MS.gene45671.t1;Parent=MS.gene45671.t1 |
chr4.4 | exon | 37802460 | 37802567 | 37802460 | ID=MS.gene45671.t1.exon4;Parent=MS.gene45671.t1 |
chr4.4 | CDS | 37802460 | 37802567 | 37802460 | ID=cds.MS.gene45671.t1;Parent=MS.gene45671.t1 |
chr4.4 | exon | 37802728 | 37803002 | 37802728 | ID=MS.gene45671.t1.exon5;Parent=MS.gene45671.t1 |
chr4.4 | CDS | 37802728 | 37803002 | 37802728 | ID=cds.MS.gene45671.t1;Parent=MS.gene45671.t1 |
chr4.4 | exon | 37803120 | 37803330 | 37803120 | ID=MS.gene45671.t1.exon6;Parent=MS.gene45671.t1 |
chr4.4 | CDS | 37803120 | 37803330 | 37803120 | ID=cds.MS.gene45671.t1;Parent=MS.gene45671.t1 |
Gene Sequence |
Protein sequence |