AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45906

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45906.t1 MTR_7g057230 81.489 470 42 2 2 426 188 657 0.0 758
MS.gene45906.t1 MTR_6g047750 45.312 448 172 9 41 425 224 661 6.08e-103 320
MS.gene45906.t1 MTR_4g074310 62.201 209 42 3 110 294 1 196 3.12e-77 239
MS.gene45906.t1 MTR_4g074320 70.000 170 27 1 53 198 1 170 2.01e-73 228
MS.gene45906.t1 MTR_3g089055 35.864 382 186 9 98 425 193 569 9.10e-66 220
MS.gene45906.t1 MTR_3g089055 35.864 382 186 9 98 425 188 564 9.81e-66 220
MS.gene45906.t1 MTR_1g029420 35.294 374 183 8 106 425 223 591 7.02e-59 202
MS.gene45906.t1 MTR_4g133660 37.063 286 149 5 166 425 262 542 5.73e-52 183
MS.gene45906.t1 MTR_2g082090 37.063 286 149 5 166 425 298 578 1.15e-50 180
MS.gene45906.t1 MTR_5g097480 30.193 414 225 9 66 425 140 543 2.15e-47 171
MS.gene45906.t1 MTR_3g056110 35.192 287 153 6 166 425 261 541 4.47e-47 169
MS.gene45906.t1 MTR_5g094450 30.607 379 198 10 106 425 159 531 1.00e-44 163
MS.gene45906.t1 MTR_2g026250 40.952 210 122 2 218 425 386 595 7.00e-44 162
MS.gene45906.t1 MTR_7g027190 29.617 287 158 8 166 425 403 672 6.38e-29 119
MS.gene45906.t1 MTR_8g442410 29.577 284 168 6 166 425 249 524 1.30e-27 115
MS.gene45906.t1 MTR_4g104020 29.054 296 167 9 161 425 236 519 8.40e-25 107
MS.gene45906.t1 MTR_4g102790 29.900 301 171 10 155 425 371 661 9.15e-25 107
MS.gene45906.t1 MTR_3g065980 28.526 312 173 8 155 425 237 539 9.15e-25 107
MS.gene45906.t1 MTR_4g064200 27.523 218 154 3 212 425 432 649 6.74e-22 98.6
MS.gene45906.t1 MTR_4g097080 27.723 303 186 8 151 425 205 502 7.43e-22 98.2
MS.gene45906.t1 MTR_4g064160 24.739 287 184 5 166 425 402 683 2.69e-21 97.1
MS.gene45906.t1 MTR_2g097410 24.771 218 160 3 212 425 523 740 1.73e-19 91.7
MS.gene45906.t1 MTR_2g097350 24.211 285 186 5 166 425 360 639 1.54e-18 88.6
MS.gene45906.t1 MTR_2g097463 25.203 246 177 3 187 425 409 654 2.37e-18 87.8
MS.gene45906.t1 MTR_2g097473 24.889 225 150 3 212 425 437 653 3.11e-18 87.4
MS.gene45906.t1 MTR_7g109580 25.424 236 168 3 194 425 322 553 4.82e-18 86.7
MS.gene45906.t1 MTR_4g064150 21.453 289 194 6 166 426 450 733 6.05e-18 86.7
MS.gene45906.t1 MTR_2g097390 23.158 285 189 5 166 425 361 640 7.33e-18 86.3
MS.gene45906.t1 MTR_7g062120 25.116 215 150 3 218 425 529 739 9.81e-18 86.3
MS.gene45906.t1 MTR_2g097310 23.509 285 188 5 166 425 358 637 1.30e-17 85.5
MS.gene45906.t1 MTR_2g097467 24.771 218 159 3 212 425 437 653 3.86e-17 84.3
MS.gene45906.t1 MTR_4g064180 22.667 300 197 7 150 419 325 619 6.99e-17 83.2
MS.gene45906.t1 MTR_7g074650 29.545 220 138 7 212 425 583 791 8.47e-17 83.2
MS.gene45906.t1 MTR_4g076140 34.177 158 95 4 272 425 316 468 1.41e-16 82.0
MS.gene45906.t1 MTR_5g009080 34.437 151 92 3 280 425 329 477 1.96e-16 81.6
MS.gene45906.t1 MTR_2g034250 29.114 237 156 5 197 425 352 584 3.60e-16 80.9
MS.gene45906.t1 MTR_2g034280 26.042 288 181 7 166 425 291 574 9.08e-16 79.7
MS.gene45906.t1 MTR_2g034260 30.802 237 151 7 197 425 352 583 9.89e-16 79.7
MS.gene45906.t1 MTR_4g064120 21.667 300 200 7 150 419 325 619 1.27e-15 79.3
MS.gene45906.t1 MTR_2g097380 23.404 282 177 7 166 425 296 560 1.72e-15 79.0
MS.gene45906.t1 MTR_3g022830 31.098 164 106 4 269 425 272 435 6.98e-15 76.6
MS.gene45906.t1 MTR_4g077760 31.250 240 125 9 166 378 277 503 8.66e-15 76.6
MS.gene45906.t1 MTR_5g015950 23.899 318 179 7 166 425 133 445 7.86e-14 73.6
MS.gene45906.t1 MTR_3g053270 23.899 318 179 7 166 425 133 445 7.86e-14 73.6
MS.gene45906.t1 MTR_5g015490 25.246 305 197 9 151 425 186 489 8.91e-14 73.6
MS.gene45906.t1 MTR_4g095500 23.950 238 151 3 218 425 230 467 1.09e-12 70.1
MS.gene45906.t1 MTR_1g069725 24.370 357 215 13 105 425 125 462 1.61e-12 69.3
MS.gene45906.t1 MTR_1g086970 24.464 233 167 4 197 425 250 477 7.17e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45906.t1 AT5G52510 43.088 434 179 11 50 425 216 639 6.71e-93 293
MS.gene45906.t1 AT1G21450 32.088 455 237 13 26 425 155 592 1.69e-57 199
MS.gene45906.t1 AT5G48150 37.413 286 148 5 166 425 209 489 7.02e-50 176
MS.gene45906.t1 AT5G48150 37.413 286 148 5 166 425 209 489 7.02e-50 176
MS.gene45906.t1 AT5G48150 37.413 286 148 5 166 425 209 489 7.02e-50 176
MS.gene45906.t1 AT5G48150 37.413 286 148 5 166 425 209 489 7.02e-50 176
MS.gene45906.t1 AT2G04890 35.106 282 153 5 166 425 139 412 3.91e-47 167
MS.gene45906.t1 AT1G50600 42.857 210 118 2 218 425 316 525 4.64e-47 169
MS.gene45906.t1 AT1G50600 42.857 210 118 2 218 425 387 596 8.07e-47 170
MS.gene45906.t1 AT1G50600 42.857 210 118 2 218 425 391 600 9.40e-47 170
MS.gene45906.t1 AT4G17230 34.028 288 155 6 166 425 244 524 3.27e-42 156
MS.gene45906.t1 AT4G17230 34.028 288 155 6 166 425 244 524 3.27e-42 156
MS.gene45906.t1 AT3G03450 30.667 300 170 8 155 425 254 544 4.10e-27 114
MS.gene45906.t1 AT1G66350 28.716 296 174 9 155 425 222 505 5.77e-26 110
MS.gene45906.t1 AT2G29065 24.533 375 225 7 109 425 253 627 1.93e-25 109
MS.gene45906.t1 AT5G17490 29.530 298 174 8 155 425 227 515 1.03e-23 103
MS.gene45906.t1 AT1G14920 28.904 301 173 10 155 425 239 528 9.35e-23 100
MS.gene45906.t1 AT2G01570 29.221 308 175 10 148 425 286 580 1.26e-22 100
MS.gene45906.t1 AT3G50650 28.620 297 165 7 166 425 255 541 1.73e-22 100
MS.gene45906.t1 AT2G29060 23.264 288 190 5 166 425 407 691 4.86e-21 96.3
MS.gene45906.t1 AT2G29060 23.264 288 190 5 166 425 370 654 5.61e-21 95.9
MS.gene45906.t1 AT5G66770 32.500 240 127 7 166 378 301 532 1.41e-20 94.7
MS.gene45906.t1 AT1G07530 25.346 217 159 2 212 425 548 764 1.70e-20 94.7
MS.gene45906.t1 AT2G37650 25.116 215 158 2 214 425 486 700 1.67e-19 91.7
MS.gene45906.t1 AT2G37650 25.116 215 158 2 214 425 498 712 1.68e-19 91.7
MS.gene45906.t1 AT1G07520 23.368 291 188 7 166 426 408 693 6.83e-19 89.7
MS.gene45906.t1 AT1G07520 23.368 291 188 7 166 426 409 694 6.90e-19 89.7
MS.gene45906.t1 AT1G07520 23.448 290 187 7 166 425 244 528 1.01e-18 89.0
MS.gene45906.t1 AT1G07520 23.448 290 187 7 166 425 244 528 1.01e-18 89.0
MS.gene45906.t1 AT3G46600 23.875 289 184 6 166 425 89 370 1.64e-18 87.0
MS.gene45906.t1 AT5G59450 23.693 287 185 7 168 425 316 597 2.82e-18 87.8
MS.gene45906.t1 AT3G46600 23.875 289 184 6 166 425 297 578 3.32e-18 87.4
MS.gene45906.t1 AT3G46600 23.875 289 184 6 166 425 265 546 4.40e-18 87.0
MS.gene45906.t1 AT4G37650 24.450 409 226 12 91 425 129 528 1.42e-17 85.1
MS.gene45906.t1 AT1G63100 27.863 262 162 9 137 379 339 592 4.68e-17 84.0
MS.gene45906.t1 AT1G50420 25.959 339 166 11 166 425 146 478 6.00e-17 83.2
MS.gene45906.t1 AT1G63100 27.273 264 161 8 137 379 314 567 6.10e-17 83.6
MS.gene45906.t1 AT3G54220 28.704 216 141 6 214 425 443 649 3.06e-16 81.3
MS.gene45906.t1 AT3G49950 26.286 175 121 3 257 426 237 408 2.42e-11 65.5

Find 72 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTCGATAGTTGGTTAT+TGG 0.173769 7.2:+45841036 MS.gene45906:CDS
CTCTCAATGTTGCATCTTCT+TGG 0.201520 7.2:+45842007 MS.gene45906:CDS
TTGCTTCAAGCTCTCTTTCA+TGG 0.207322 7.2:+45841177 MS.gene45906:intron
GGATGGTCACTAGTTGTTTC+TGG 0.208113 7.2:+45840752 MS.gene45906:CDS
TTCAATTTCTGAAGGCAAAA+TGG 0.213549 7.2:+45840961 MS.gene45906:CDS
GAAATCCAACGGAGAACTTT+TGG 0.237413 7.2:+45841396 MS.gene45906:CDS
TCCAAGCGTTGTCACAGTTT+TGG 0.259395 7.2:+45841624 MS.gene45906:CDS
GAGAGATTAAAGCTTGAAAA+AGG 0.266629 7.2:+45841760 MS.gene45906:CDS
GGCTTCAAGGATTGCGATAT+TGG 0.275042 7.2:-45841203 None:intergenic
GAGTTAGTTCGGTGAGATTT+AGG 0.277013 7.2:-45841468 None:intergenic
TCACACTCTTTGTTGTATCT+TGG 0.314011 7.2:-45841231 None:intergenic
AAGCTGAGAGTTTAGGAATC+AGG 0.323911 7.2:+45841425 MS.gene45906:CDS
CGTGCACGCATGAGCATGGC+TGG 0.338695 7.2:+45841862 MS.gene45906:CDS
TCATACATCATCTTCTTGTC+TGG 0.342721 7.2:-45840689 None:intergenic
GCATGAGCATGGCTGGGTTT+AGG 0.345416 7.2:+45841869 MS.gene45906:CDS
AAAGACGGTGAGAATGAAAT+AGG 0.349094 7.2:-45840851 None:intergenic
GGTCGAGAAGCTGAGAGTTT+AGG 0.349907 7.2:+45841418 MS.gene45906:CDS
TGGAGTTTGCTTTGGTTGGA+TGG 0.363970 7.2:+45841978 MS.gene45906:CDS
GATGGTCACTAGTTGTTTCT+GGG 0.380026 7.2:+45840753 MS.gene45906:CDS
AGCTTCCATTAACGATTGTT+TGG 0.384672 7.2:-45840933 None:intergenic
CAATGACTCGCGAGTTAGTT+CGG 0.393659 7.2:-45841479 None:intergenic
TTGTCTGGGTCATAACTTGT+TGG 0.402653 7.2:-45840674 None:intergenic
ATGGTGGAGTTTGCTTTGGT+TGG 0.406060 7.2:+45841974 MS.gene45906:CDS
GGAGTTTGCTTTGGTTGGAT+GGG 0.411286 7.2:+45841979 MS.gene45906:CDS
GTTACTGACTCAGTAACTTT+CGG 0.416851 7.2:-45841907 None:intergenic
TATCTTGGAATGCGGCTTCA+AGG 0.418126 7.2:-45841216 None:intergenic
TCCGTTGACATGCTCTCATC+TGG 0.426329 7.2:-45841559 None:intergenic
CAAAACTAAAATTCGATAGT+TGG 0.427464 7.2:+45841029 MS.gene45906:CDS
AACAATTCCGCAACTGGAGG+TGG 0.434762 7.2:-45841106 None:intergenic
GCACAGTAATTCTGCTACCT+TGG 0.435103 7.2:-45841942 None:intergenic
CAGTAACTTTCGGACTCATC+GGG 0.453689 7.2:-45841897 None:intergenic
TGGATTTCAGATTGTCATCA+TGG 0.457694 7.2:-45841381 None:intergenic
GAGAATGGTGGAGTTTGCTT+TGG 0.469489 7.2:+45841970 MS.gene45906:CDS
TCGACCCAAAAGTTCTCCGT+TGG 0.480364 7.2:-45841401 None:intergenic
CAAGAAGATGATGTATGAGT+TGG 0.484966 7.2:+45840694 MS.gene45906:CDS
TCCAAAACTGTGACAACGCT+TGG 0.494739 7.2:-45841625 None:intergenic
TCAGTAACTTTCGGACTCAT+CGG 0.497001 7.2:-45841898 None:intergenic
TCAGCCACACGTGAAACTAA+TGG 0.502475 7.2:-45841673 None:intergenic
CTTTGTTGTATCTTGGAATG+CGG 0.536014 7.2:-45841224 None:intergenic
CATACATCATCTTCTTGTCT+GGG 0.542385 7.2:-45840688 None:intergenic
GCTGGTGAAACAATAGATGA+AGG 0.542748 7.2:-45840899 None:intergenic
TCGGTGAGATTTAGGTTCAC+CGG 0.544255 7.2:-45841460 None:intergenic
TGTTTGGAAAACTCAGAAGC+TGG 0.544411 7.2:-45840917 None:intergenic
AATCAGGTTTGAATTCAAAC+CGG 0.544590 7.2:+45841441 MS.gene45906:CDS
AGAATCTATTGAATTTGCGA+TGG 0.545507 7.2:+45841723 MS.gene45906:CDS
TGCAGTTGCTTGTGAAGGGA+GGG 0.568004 7.2:+45841804 MS.gene45906:CDS
GCTGCCACTTCAATTTCTGA+AGG 0.575775 7.2:+45840953 MS.gene45906:CDS
ATGGCGTGCACGCATGAGCA+TGG 0.579124 7.2:+45841858 MS.gene45906:CDS
GAAGACATTGATGATGAAGA+AGG 0.586324 7.2:+45840731 MS.gene45906:CDS
GTGCACGCATGAGCATGGCT+GGG 0.597641 7.2:+45841863 MS.gene45906:CDS
AGAAATGCAGTTGCTTGTGA+AGG 0.600882 7.2:+45841799 MS.gene45906:CDS
ATGCAGTTGCTTGTGAAGGG+AGG 0.602267 7.2:+45841803 MS.gene45906:CDS
GTGTATGTGCGAAACTAGAG+AGG 0.610106 7.2:-45841000 None:intergenic
ATTACTGTGCATGAAGAGAA+TGG 0.610201 7.2:+45841955 MS.gene45906:CDS
AGATGAATTTAGTGATGTGG+TGG 0.611511 7.2:-45840876 None:intergenic
ACCAGATGAGAGCATGTCAA+CGG 0.615092 7.2:+45841558 MS.gene45906:CDS
ACATTGATGATGAAGAAGGA+TGG 0.617955 7.2:+45840735 MS.gene45906:CDS
TTATGAACACCAACAACGAA+TGG 0.618414 7.2:+45840777 MS.gene45906:CDS
TTTGCCTTCAGAAATTGAAG+TGG 0.629683 7.2:-45840957 None:intergenic
TTGTGAAGGGAGGGATAGTG+TGG 0.632145 7.2:+45841813 MS.gene45906:CDS
AAGGGAGGGATAGTGTGGAA+AGG 0.634468 7.2:+45841818 MS.gene45906:CDS
AGGAGATGAATTTAGTGATG+TGG 0.635063 7.2:-45840879 None:intergenic
TGTGAAGAATCTCTATGTTG+TGG 0.635341 7.2:+45841249 MS.gene45906:CDS
GTCATTGAATTGTGACTCAG+AGG 0.645367 7.2:+45841495 MS.gene45906:CDS
AGGCAAAATGGATTATGCGA+AGG 0.646229 7.2:+45840973 MS.gene45906:CDS
GATGACAATCTGAAATCCAA+CGG 0.652900 7.2:+45841385 MS.gene45906:CDS
AGCACCATTAGTTTCACGTG+TGG 0.653510 7.2:+45841669 MS.gene45906:CDS
GAAATGCAGTTGCTTGTGAA+GGG 0.657022 7.2:+45841800 MS.gene45906:CDS
GTAACTTCAAGACTCATCCA+AGG 0.665089 7.2:+45841925 MS.gene45906:CDS
TGACGAAGAAGTGTGTCACG+TGG 0.698381 7.2:-45841586 None:intergenic
GTTGAAGATCACGACTGTGA+CGG 0.707788 7.2:+45841351 MS.gene45906:CDS
ACTGTGCATGAAGAGAATGG+TGG 0.760237 7.2:+45841958 MS.gene45906:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTATCGAATTTTAGTTTT+GGG - chr7.2:45841030-45841049 None:intergenic 20.0%
! AAAATTCGATAGTTGGTTAT+TGG + chr7.2:45841036-45841055 MS.gene45906:CDS 25.0%
! CAAAACTAAAATTCGATAGT+TGG + chr7.2:45841029-45841048 MS.gene45906:CDS 25.0%
!! AGCAAAATCAGAATTTTCAT+AGG - chr7.2:45840633-45840652 None:intergenic 25.0%
!!! AATGAAATAGGTTTTTGGAT+GGG - chr7.2:45840842-45840861 None:intergenic 25.0%
!!! CAACTATCGAATTTTAGTTT+TGG - chr7.2:45841031-45841050 None:intergenic 25.0%
!!! TATGTTGTGGATTTTGATAT+TGG + chr7.2:45841262-45841281 MS.gene45906:CDS 25.0%
AATCAGGTTTGAATTCAAAC+CGG + chr7.2:45841441-45841460 MS.gene45906:CDS 30.0%
AGAATCTATTGAATTTGCGA+TGG + chr7.2:45841723-45841742 MS.gene45906:CDS 30.0%
GAGAGATTAAAGCTTGAAAA+AGG + chr7.2:45841760-45841779 MS.gene45906:CDS 30.0%
! GTGAGAATGAAATAGGTTTT+TGG - chr7.2:45840847-45840866 None:intergenic 30.0%
! GTTTTCCAAACAATCGTTAA+TGG + chr7.2:45840928-45840947 MS.gene45906:CDS 30.0%
! TTCAATTTCTGAAGGCAAAA+TGG + chr7.2:45840961-45840980 MS.gene45906:CDS 30.0%
!! AAAGAGAAGTTAAGTTGACT+CGG - chr7.2:45841146-45841165 None:intergenic 30.0%
!! GAATGAAATAGGTTTTTGGA+TGG - chr7.2:45840843-45840862 None:intergenic 30.0%
!! GTGGATTTTGATATTGGTAA+TGG + chr7.2:45841268-45841287 MS.gene45906:intron 30.0%
AAAGACGGTGAGAATGAAAT+AGG - chr7.2:45840854-45840873 None:intergenic 35.0%
AGATGAATTTAGTGATGTGG+TGG - chr7.2:45840879-45840898 None:intergenic 35.0%
AGCTTCCATTAACGATTGTT+TGG - chr7.2:45840936-45840955 None:intergenic 35.0%
AGGAGATGAATTTAGTGATG+TGG - chr7.2:45840882-45840901 None:intergenic 35.0%
ATTACTGTGCATGAAGAGAA+TGG + chr7.2:45841955-45841974 MS.gene45906:CDS 35.0%
CAAGAAGATGATGTATGAGT+TGG + chr7.2:45840694-45840713 MS.gene45906:CDS 35.0%
CATACATCATCTTCTTGTCT+GGG - chr7.2:45840691-45840710 None:intergenic 35.0%
TCATACATCATCTTCTTGTC+TGG - chr7.2:45840692-45840711 None:intergenic 35.0%
TGGATTTCAGATTGTCATCA+TGG - chr7.2:45841384-45841403 None:intergenic 35.0%
TGTGAAGAATCTCTATGTTG+TGG + chr7.2:45841249-45841268 MS.gene45906:CDS 35.0%
TTATGAACACCAACAACGAA+TGG + chr7.2:45840777-45840796 MS.gene45906:CDS 35.0%
TTTGCCTTCAGAAATTGAAG+TGG - chr7.2:45840960-45840979 None:intergenic 35.0%
! AAATCCAACGGAGAACTTTT+GGG + chr7.2:45841397-45841416 MS.gene45906:CDS 35.0%
! CTTTGTTGTATCTTGGAATG+CGG - chr7.2:45841227-45841246 None:intergenic 35.0%
! GATGACAATCTGAAATCCAA+CGG + chr7.2:45841385-45841404 MS.gene45906:CDS 35.0%
! TCACACTCTTTGTTGTATCT+TGG - chr7.2:45841234-45841253 None:intergenic 35.0%
! TTTTGCTGAGATTCAAAGCA+CGG + chr7.2:45840646-45840665 MS.gene45906:CDS 35.0%
!! ACATTGATGATGAAGAAGGA+TGG + chr7.2:45840735-45840754 MS.gene45906:CDS 35.0%
!! GAAGACATTGATGATGAAGA+AGG + chr7.2:45840731-45840750 MS.gene45906:CDS 35.0%
!! GTTACTGACTCAGTAACTTT+CGG - chr7.2:45841910-45841929 None:intergenic 35.0%
!! TGGAAAGGTGTGAAGTTTTT+GGG + chr7.2:45841833-45841852 MS.gene45906:CDS 35.0%
!! TGTTTTTGACCATTCGTTGT+TGG - chr7.2:45840789-45840808 None:intergenic 35.0%
AAGCTGAGAGTTTAGGAATC+AGG + chr7.2:45841425-45841444 MS.gene45906:CDS 40.0%
AGAAATGCAGTTGCTTGTGA+AGG + chr7.2:45841799-45841818 MS.gene45906:CDS 40.0%
CTCTCAATGTTGCATCTTCT+TGG + chr7.2:45842007-45842026 MS.gene45906:CDS 40.0%
GAAATGCAGTTGCTTGTGAA+GGG + chr7.2:45841800-45841819 MS.gene45906:CDS 40.0%
GCTGGTGAAACAATAGATGA+AGG - chr7.2:45840902-45840921 None:intergenic 40.0%
GTAACTTCAAGACTCATCCA+AGG + chr7.2:45841925-45841944 MS.gene45906:CDS 40.0%
GTCATTGAATTGTGACTCAG+AGG + chr7.2:45841495-45841514 MS.gene45906:CDS 40.0%
TCAGTAACTTTCGGACTCAT+CGG - chr7.2:45841901-45841920 None:intergenic 40.0%
TGTTTGGAAAACTCAGAAGC+TGG - chr7.2:45840920-45840939 None:intergenic 40.0%
TTGCTTCAAGCTCTCTTTCA+TGG + chr7.2:45841177-45841196 MS.gene45906:intron 40.0%
! AGTGATGTGGTGGAAAAAGA+CGG - chr7.2:45840869-45840888 None:intergenic 40.0%
! GAAATCCAACGGAGAACTTT+TGG + chr7.2:45841396-45841415 MS.gene45906:CDS 40.0%
! GAGTTAGTTCGGTGAGATTT+AGG - chr7.2:45841471-45841490 None:intergenic 40.0%
! TTGTCTGGGTCATAACTTGT+TGG - chr7.2:45840677-45840696 None:intergenic 40.0%
!! AGGCAAAATGGATTATGCGA+AGG + chr7.2:45840973-45840992 MS.gene45906:CDS 40.0%
!! GATGGTCACTAGTTGTTTCT+GGG + chr7.2:45840753-45840772 MS.gene45906:CDS 40.0%
!! GGTGTGAAGTTTTTGGGAAA+TGG + chr7.2:45841839-45841858 MS.gene45906:CDS 40.0%
!! GTGGAAAGGTGTGAAGTTTT+TGG + chr7.2:45841832-45841851 MS.gene45906:CDS 40.0%
ACTGTGCATGAAGAGAATGG+TGG + chr7.2:45841958-45841977 MS.gene45906:CDS 45.0%
CAATGACTCGCGAGTTAGTT+CGG - chr7.2:45841482-45841501 None:intergenic 45.0%
CAGTAACTTTCGGACTCATC+GGG - chr7.2:45841900-45841919 None:intergenic 45.0%
GCACAGTAATTCTGCTACCT+TGG - chr7.2:45841945-45841964 None:intergenic 45.0%
GGCTTCAAGGATTGCGATAT+TGG - chr7.2:45841206-45841225 None:intergenic 45.0%
GTCGTGATCTTCAACATTGC+TGG - chr7.2:45841346-45841365 None:intergenic 45.0%
GTGTATGTGCGAAACTAGAG+AGG - chr7.2:45841003-45841022 None:intergenic 45.0%
GTTGAAGATCACGACTGTGA+CGG + chr7.2:45841351-45841370 MS.gene45906:CDS 45.0%
TATCTTGGAATGCGGCTTCA+AGG - chr7.2:45841219-45841238 None:intergenic 45.0%
TCAGCCACACGTGAAACTAA+TGG - chr7.2:45841676-45841695 None:intergenic 45.0%
TCCAAAACTGTGACAACGCT+TGG - chr7.2:45841628-45841647 None:intergenic 45.0%
TGAAAATCCACCTCCAGTTG+CGG + chr7.2:45841099-45841118 MS.gene45906:intron 45.0%
TTGCTGAACAATTCCGCAAC+TGG - chr7.2:45841115-45841134 None:intergenic 45.0%
! ACCAGATGAGAGCATGTCAA+CGG + chr7.2:45841558-45841577 MS.gene45906:CDS 45.0%
! AGCACCATTAGTTTCACGTG+TGG + chr7.2:45841669-45841688 MS.gene45906:CDS 45.0%
! ATGGTGGAGTTTGCTTTGGT+TGG + chr7.2:45841974-45841993 MS.gene45906:CDS 45.0%
! GAGAATGGTGGAGTTTGCTT+TGG + chr7.2:45841970-45841989 MS.gene45906:CDS 45.0%
! GCTGCCACTTCAATTTCTGA+AGG + chr7.2:45840953-45840972 MS.gene45906:CDS 45.0%
! GGAGTTTGCTTTGGTTGGAT+GGG + chr7.2:45841979-45841998 MS.gene45906:CDS 45.0%
! GGATGGTCACTAGTTGTTTC+TGG + chr7.2:45840752-45840771 MS.gene45906:CDS 45.0%
! TCGGTGAGATTTAGGTTCAC+CGG - chr7.2:45841463-45841482 None:intergenic 45.0%
! TGGAGTTTGCTTTGGTTGGA+TGG + chr7.2:45841978-45841997 MS.gene45906:CDS 45.0%
!! TCCAAGCGTTGTCACAGTTT+TGG + chr7.2:45841624-45841643 MS.gene45906:CDS 45.0%
AACAATTCCGCAACTGGAGG+TGG - chr7.2:45841109-45841128 None:intergenic 50.0%
AAGGGAGGGATAGTGTGGAA+AGG + chr7.2:45841818-45841837 MS.gene45906:CDS 50.0%
ATGCAGTTGCTTGTGAAGGG+AGG + chr7.2:45841803-45841822 MS.gene45906:CDS 50.0%
CTGAACAATTCCGCAACTGG+AGG - chr7.2:45841112-45841131 None:intergenic 50.0%
GAACTCCATGCGAGTCTCAA+TGG + chr7.2:45841316-45841335 MS.gene45906:intron 50.0%
GGTCGAGAAGCTGAGAGTTT+AGG + chr7.2:45841418-45841437 MS.gene45906:CDS 50.0%
GTGAACCATTGAGACTCGCA+TGG - chr7.2:45841324-45841343 None:intergenic 50.0%
TCCGTTGACATGCTCTCATC+TGG - chr7.2:45841562-45841581 None:intergenic 50.0%
TCGACCCAAAAGTTCTCCGT+TGG - chr7.2:45841404-45841423 None:intergenic 50.0%
TGCAGTTGCTTGTGAAGGGA+GGG + chr7.2:45841804-45841823 MS.gene45906:CDS 50.0%
TTGTGAAGGGAGGGATAGTG+TGG + chr7.2:45841813-45841832 MS.gene45906:CDS 50.0%
! TGACGAAGAAGTGTGTCACG+TGG - chr7.2:45841589-45841608 None:intergenic 50.0%
GCATGAGCATGGCTGGGTTT+AGG + chr7.2:45841869-45841888 MS.gene45906:CDS 55.0%
ATGGCGTGCACGCATGAGCA+TGG + chr7.2:45841858-45841877 MS.gene45906:CDS 60.0%
GTGCACGCATGAGCATGGCT+GGG + chr7.2:45841863-45841882 MS.gene45906:CDS 60.0%
CGTGCACGCATGAGCATGGC+TGG + chr7.2:45841862-45841881 MS.gene45906:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 45840620 45842035 45840620 ID=MS.gene45906
chr7.2 mRNA 45840620 45842035 45840620 ID=MS.gene45906.t1;Parent=MS.gene45906
chr7.2 exon 45840620 45841114 45840620 ID=MS.gene45906.t1.exon1;Parent=MS.gene45906.t1
chr7.2 CDS 45840620 45841114 45840620 ID=cds.MS.gene45906.t1;Parent=MS.gene45906.t1
chr7.2 exon 45841187 45841283 45841187 ID=MS.gene45906.t1.exon2;Parent=MS.gene45906.t1
chr7.2 CDS 45841187 45841283 45841187 ID=cds.MS.gene45906.t1;Parent=MS.gene45906.t1
chr7.2 exon 45841347 45842035 45841347 ID=MS.gene45906.t1.exon3;Parent=MS.gene45906.t1
chr7.2 CDS 45841347 45842035 45841347 ID=cds.MS.gene45906.t1;Parent=MS.gene45906.t1
Gene Sequence

>MS.gene45906

ATGAATTTTTCCTATGAAAATTCTGATTTTGCTGAGATTCAAAGCACGGTAGTTCCAACAAGTTATGACCCAGACAAGAAGATGATGTATGAGTTGGAGAAAAAGCTTCATGAAGACATTGATGATGAAGAAGGATGGTCACTAGTTGTTTCTGGGATTATGAACACCAACAACGAATGGTCAAAAACAATTCGTAATTTGAATAGTTTCGAGCAAAATCCCATCCAAAAACCTATTTCATTCTCACCGTCTTTTTCCACCACATCACTAAATTCATCTCCTTCATCTATTGTTTCACCAGCTTCTGAGTTTTCCAAACAATCGTTAATGGAAGCTGCCACTTCAATTTCTGAAGGCAAAATGGATTATGCGAAGGAGATCCTCTCTAGTTTCGCACATACACAAAACCCAAAACTAAAATTCGATAGTTGGTTATTGGATTGCATTGCTTCAACACTGAAATTGCGTCTGAATAACATTGAAAATCCACCTCCAGTTGCGGAATTGTTCAGCAAAGAACATGCCGAGTCAACTTAACTTCTCTTTGATCACTCTCTTTGCTTCAAGCTCTCTTTCATGGCTGCCAATATCGCAATCCTTGAAGCCGCATTCCAAGATACAACAAAGAGTGTGAAGAATCTCTATGTTGTGGATTTTGATATTGGTAATGGAAAACAATACATCAATCTGCTCTAAGAACTCCATGCGAGTCTCAATGGTTCACCAGCAATGTTGAAGATCACGACTGTGACGGTGAACATCCATGATGACAATCTGAAATCCAACGGAGAACTTTTGGGTCGAGAAGCTGAGAGTTTAGGAATCAGGTTTGAATTCAAACCGGTGAACCTAAATCTCACCGAACTAACTCGCGAGTCATTGAATTGTGACTCAGAGGATATTCTTGCTGTGAATTTCGCGTTTAATCTATACAAAATACCAGATGAGAGCATGTCAACGGAGAATCCACGTGACACACTTCTTCGTCAAGTGAAATCACTCTCTCCAAGCGTTGTCACAGTTTTGGAGCAAGAGATGAATACAAACACAGCACCATTAGTTTCACGTGTGGCTGAAACTTGTTCTTATTACAGCACATTGCTAGAATCTATTGAATTTGCGATGGATCGTGATAGTTATGAGAGATTAAAGCTTGAAAAAGGACTGAGCATGAAGATGAGAAATGCAGTTGCTTGTGAAGGGAGGGATAGTGTGGAAAGGTGTGAAGTTTTTGGGAAATGGCGTGCACGCATGAGCATGGCTGGGTTTAGGTTAAACCCGATGAGTCCGAAAGTTACTGAGTCAGTAACTTCAAGACTCATCCAAGGTAGCAGAATTACTGTGCATGAAGAGAATGGTGGAGTTTGCTTTGGTTGGATGGGAAAAACTCTCAATGTTGCATCTTCTTGGTGTTAA
Protein sequence

>MS.gene45906.t1

MNFSYENSDFAEIQSTVVPTSYDPDKKMMYELEKKLHEDIDDEEGWSLVVSGIMNTNNEWSKTIRNLNSFEQNPIQKPISFSPSFSTTSLNSSPSSIVSPASEFSKQSLMEAATSISEGKMDYAKEILSSFAHTQNPKLKFDSWLLDCIASTLKLRLNNIENPPPLSFMAANIAILEAAFQDTTKSVKNLYVVDFDIAMLKITTVTVNIHDDNLKSNGELLGREAESLGIRFEFKPVNLNLTELTRESLNCDSEDILAVNFAFNLYKIPDESMSTENPRDTLLRQVKSLSPSVVTVLEQEMNTNTAPLVSRVAETCSYYSTLLESIEFAMDRDSYERLKLEKGLSMKMRNAVACEGRDSVERCEVFGKWRARMSMAGFRLNPMSPKVTESVTSRLIQGSRITVHEENGGVCFGWMGKTLNVASSWC