AlfalfaGEDB | MS.gene46071

M. sativa cultivar XinJiangDaYe / MS.gene46071

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF05920.14 PF07526.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46071.t1	XP_003623151.1	92.9	449	30	2	1	448	69	516	5.50E-212	746.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46071.t1	Q9LZM8	50.1	435	174	11	49	448	149	575	7.0e-91	335.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46071.t1	G7L5K2	92.9	449	30	2	1	448	69	516	3.9e-212	746.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene46071.t1	TF	HB-BELL

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46071.t1	MTR_7g065050	95.991	449	16	2	1	448	69	516	0.0	885
MS.gene46071.t1	MTR_4g019450	59.286	420	130	8	63	448	189	601	3.24e-165	478
MS.gene46071.t1	MTR_2g095050	47.719	285	109	7	57	309	235	511	1.79e-77	253
MS.gene46071.t1	MTR_8g098815	35.374	441	213	12	70	445	185	618	8.29e-66	222
MS.gene46071.t1	MTR_8g078480	42.671	307	136	8	51	324	364	663	9.46e-63	218
MS.gene46071.t1	MTR_1g023050	39.542	306	150	5	74	356	174	467	4.78e-62	212
MS.gene46071.t1	MTR_4g051532	45.788	273	126	7	70	324	217	485	7.57e-62	213
MS.gene46071.t1	MTR_5g018860	43.262	282	137	8	66	324	330	611	2.18e-61	213
MS.gene46071.t1	MTR_3g112300	40.909	264	128	7	66	307	158	415	1.50e-59	203
MS.gene46071.t1	MTR_1g057790	42.262	336	167	9	69	383	160	489	1.66e-59	206

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46071.t1	AT5G02030	47.992	498	191	16	2	448	95	575	4.12e-117	355
MS.gene46071.t1	AT2G27990	50.397	252	116	4	60	309	252	496	3.97e-77	251
MS.gene46071.t1	AT1G75410	46.415	265	110	8	65	307	162	416	2.97e-67	224
MS.gene46071.t1	AT1G75410	46.415	265	110	8	65	307	162	416	2.97e-67	224
MS.gene46071.t1	AT1G19700	45.725	269	111	7	66	307	161	421	6.00e-67	223
MS.gene46071.t1	AT1G19700	45.725	269	111	7	66	307	161	421	6.00e-67	223
MS.gene46071.t1	AT1G19700	45.725	269	111	7	66	307	161	421	6.00e-67	223
MS.gene46071.t1	AT1G19700	45.725	269	111	7	66	307	161	421	6.00e-67	223
MS.gene46071.t1	AT1G19700	45.725	269	111	7	66	307	161	421	6.00e-67	223
MS.gene46071.t1	AT2G16400	36.591	399	213	11	65	448	109	482	3.01e-66	220

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Find 94 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATCGTGAAACTTGTCTG+TGG	0.748355	7.2:+42548106	None:intergenic
AACATGTCCAACATCCTGTT+TGG	0.467143	7.2:-42548948	MS.gene46071:CDS
AACCCTGGCCTTTGACTGTA+AGG	0.418297	7.2:+42548976	None:intergenic
AACCTGAACAGGTTTGCAGG+AGG	0.707401	7.2:-42549227	MS.gene46071:intron
AACTGGTCTATCTCGTAACC+AGG	0.577110	7.2:-42548383	MS.gene46071:intron
AACTTGTCTGTGGAGGTAGA+TGG	0.550200	7.2:+42548116	None:intergenic
AAGGCTTTGGAAGCCAATGG+TGG	0.647272	7.2:-42548237	MS.gene46071:CDS
AATAATGGTGCAACAAGCAA+TGG	0.619469	7.2:-42547984	MS.gene46071:CDS
AATCAACAAGTTGGTAATGT+TGG	0.479434	7.2:-42548020	MS.gene46071:CDS
AATCATGTATACAACGATGG+TGG	0.691205	7.2:-42551381	MS.gene46071:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTGCGTGATACAATTA+CGG	+	chr7.2:42549543-42549562	None:intergenic	30.0%
AAATTGGTCATAGTAATTGC+CGG	+	chr7.2:42549750-42549769	None:intergenic	30.0%
AAGGAATATATGCTGAAGAA+TGG	-	chr7.2:42549221-42549240	MS.gene46071:intron	30.0%
AATTGCAGAATAGGCAATTT+GGG	-	chr7.2:42551339-42551358	MS.gene46071:CDS	30.0%
AGGAATATATGCTGAAGAAT+GGG	-	chr7.2:42549222-42549241	MS.gene46071:intron	30.0%
ATGAATCATGTATACAACGA+TGG	-	chr7.2:42547791-42547810	MS.gene46071:CDS	30.0%
CACATGTCTTATAAAATGGT+TGG	+	chr7.2:42550699-42550718	None:intergenic	30.0%
CATGTCATTAATAACAATGG+CGG	-	chr7.2:42549014-42549033	MS.gene46071:CDS	30.0%
CTTCATCAAAATCATGGAAT+TGG	-	chr7.2:42551233-42551252	MS.gene46071:CDS	30.0%
GAAACTAATCATGTTAATGG+TGG	-	chr7.2:42548109-42548128	MS.gene46071:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	42547791	42551406	42547791	ID=MS.gene46071
chr7.2	mRNA	42547791	42551406	42547791	ID=MS.gene46071.t1;Parent=MS.gene46071
chr7.2	exon	42550984	42551406	42550984	ID=MS.gene46071.t1.exon1;Parent=MS.gene46071.t1
chr7.2	CDS	42550984	42551406	42550984	ID=cds.MS.gene46071.t1;Parent=MS.gene46071.t1
chr7.2	exon	42548874	42549238	42548874	ID=MS.gene46071.t1.exon2;Parent=MS.gene46071.t1
chr7.2	CDS	42548874	42549238	42548874	ID=cds.MS.gene46071.t1;Parent=MS.gene46071.t1
chr7.2	exon	42548384	42548444	42548384	ID=MS.gene46071.t1.exon3;Parent=MS.gene46071.t1
chr7.2	CDS	42548384	42548444	42548384	ID=cds.MS.gene46071.t1;Parent=MS.gene46071.t1
chr7.2	exon	42547791	42548288	42547791	ID=MS.gene46071.t1.exon4;Parent=MS.gene46071.t1
chr7.2	CDS	42547791	42548288	42547791	ID=cds.MS.gene46071.t1;Parent=MS.gene46071.t1

Gene Sequence

>MS.gene46071

ATGAATCATGTATACAACGATGGTGGTAGTAGTAGTAACAACAATGAAGTTATGTTGTTGAAATCTGAACCTTTATCTTTATCTTTATCATCAAACAAAAACAACCAGAATCAGATGAGTGCTGCTGATTTTCAGCGTTATGGTTCTGTTGTTGATCATGTTTCTAGGAACACGGTTCCATTAGGGCCATTTACAGGTTATGCTTCTGTTTTGAAGGGATCGAGGTTTTTGAAACCTGCACAACAATTATTGGATGAGATATGTGATGTTGGTGTTCGTGCTGAGAAGATTATTGCTGCTGCTGATGCATCTTTGATGGAAACTAATCATGTTAATGGTGGAATGATTAATGGTGTTGATGATGATACACTTGGTGATGATGGAAGGAAGAACAAGTCTAGATTGTTAACAGTGCTTGATGAGGTACAAAGTTTTTTTTTTTTGTTCTTTCTCTTTTAGGATATTTTTTAATTTTTTTGTTTATGAGTTGTGTTGTATAAACATATAAAAGTTAGACATCGTATTGGTATGCTATAAAATACAACTCAAATGTGTGTTATGAATGAGGAAAAAAAACAATATAATAATTGGAAACCCTATTCATACATACGGTGTTGATGTGGATTTTGTGTCGAAGAATTTATTATTATTTTTTTGATATAATCCAATGTAATTTTTGGTAAAAAAGTTGAATGTATTCTGATCACTTTTTTATTTGGGTTGGTTTGGTTTGGTTCGTGGTTTTCATTTTAACAACTAAACTAAATCGCAACATAATAAAAATACTGGTTAAATCTATGTCACCTTCCTAAAAAAGATATTAAATTCATGTCACTTAAACAAATACTCATATAAACTCGATGAAAACTTTTATAAAATGATATATTTATTCTCTTGTTAAGTTTTTTCTTTTTTTTGTTCTTTCAAAAATGTATTTATATGCTATTTGAACTTTTAGAGAATGATAAAATCTTAATCTTTTACACTTCTTACATAATATTATTACTTTATTTCCACGTTTTTAATTTAGTTTATATTGTTTGGTGAAAATAAAATTGTAATGTTGAATGTAATTAAAAACATTGTCGGAAACATTGTTGGAAATATGTTGCGTTTTAGTTTTTTAACTTGATTTTAATGTTGAAAACAAAAAATTGTGTTGTCTCGAAAAAAACATTAAAACTCATTTGGCTCCTTAGTTCAATGGAGCTATCTACTTGGGACATGTCATTAATAACAATGGCGGTACTTTTCTCACTACTATCGAATCAAATTTTGATGTTTAAAGAAAAAACAATGGTTGTACTCTTTTTGTGGGTAGATTTTGGTTTATGTTGTATTTATGTGACTATATGGATGAACTTTTTACCCGATATTCTATAGGATAAGTTTGATGAACTAGATGATCTTTTTTCAAAAGTATTGATGAGAAGGAATATATGCTGAAGAATGGGAGTGTAAAGTGTTAATTGATACCCATAGCAAAGATTTTATACCATGAGTATTTTATTAAAGTGATTGATTGGTAGGAATCCTTTAGAAAAGATATTTACTCCAAAAAAGTGTGTTTTGATTTATTCATCTTGTTCAAAGGTTAAAGTAATTAACGTGTGTAGATAACAAAGTTTTTTTCCATCTAAAAAAAAGTTTTTTGCCTAAAGAGATTGGTTTCTGAAATTTTGGATGCTATTATAGTTGCATGTCATTTCAAAGTAGTGATAGAATCAGAATATGCAAATGGATGTGCGGCCGTAATTGTATCACGCAGTTTTTAATTTCTAATGTCCAATCTCAAAATATCGGTCGGGATTGTTTAATTTGAAGCAGATTTTGTTATTTTGTAATCCGATTTGTAAGATCTCAAAATAACAGTTGAGATTGTTTACAACGTGCATATGCGTGCTACTCTTGGAAATCTGGATCCGGTAGAAAATATACTGTTTCACTTTAATTTATCCGGCAATTACTATGACCAATTTGATGCAAGATGAAATTGGCTGTGTAGTTTGAGAGTGTATTTTTGATGACCTAAAGTGCACCTTTAGATCTTTAGGTTGTAATATTGATTTCTTGATTTTTGTAAAAAGATTAAGATGTAGAAGTGGAAGTGGAATATATACATGTCACATTAGCTTGTGAGATAATTCTTCTTTGTCAAACCTGAACAGGTTTGCAGGAGGTACAGACAGTACTATCAGCAGATTCATGCAGTAATAACTTCATTTGAATATGTTTCCGGCCTTGGTAACGCAGCTCCGTATGCAAGTTTGGCTATAAATGCCATGTCCAAACATTTTAGATTCTTGAAGAATGTGATTACTGACCAGCTTCAGTATATCGGCAAGTCTAATTATCAGATAAGCAATAGAAAGGATGAATCTCCAAGGTTTCACAACGGCGATGGAGCCCCTTACAGTCAAAGGCCAGGGTTTGTAGAACATGTCCAACATCCTGTTTGGCGACCTCAAAGAGGGCTCCCTGAGCGTGCTGTCAGTGTTCTTAGGGGATGGTTGTTTGAACACTTTTTGCATCCGTAAGTGTGTTATTTCAATCTTATTAATATCTTTTGAAACACAAACATCAGCTTGACACAATCATATTGACGCTGATATTAGTTTTTTTAGAAATCACAGTTGAGGAGACGTCAAACTTTTTGATGTCGCTGCTAGATCGCAGCTCCATATATTCTTTTTAAACCCTTCTATCAAGTCGCGCTTCAGCTGTGATATACACATTAGGCTTTTTGCTTCTTCTATGATCATCTATAAAAAAAGTTGAAATAACAACGGGTTGGTCACCAATTTCGGTCATTAAATATATCACTTAGCGACAGAAATTAGAGGCAGATTTAATATTTTCTCTCTCTATTTCAGCTTTTTCTAGTAGTGACATGTATATGGACATTCCAACCATTTTATAAGACATGTGTTTAGATTACTAATATGTTGTGTTCTTGTTACAGTTACCCTACCGATACTGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCTCGTAACCAGGTAAATTTTTCATGATTAAAGCTGCATTTTCTGTTTCATTTCTTGCGTGAGGAATTCTTTGCAGTATTATAATCGACAATGTCTATGTGTTACAGGTGTCTAATTGGTTTATAAATGCAAGAGTAAGGCTTTGGAAGCCAATGGTGGAGGAAATACACATGCTTGAATCACAGCAATCTCCAAAGGAATCACAAAGAGATGAACATAGTCGAAACAATTTATGCGAGAACAACATTGCTGAGAATCCATCTACCTCCACAGACAAGTTTCACGATGTTGCATATAAACGAACTAGAAACGAACTTCACAACATGTCAGTGCCGAATCATAGTATCGCAAGCAATCAACAAGTTGGTAATGTTGGAGTGAGCATGATGAATAATGGTGCAACAAGCAATGGTGTATCTCTGACGCTCGGTCTTCATCAAAATCATGGAATTGGGTTATCCGAGCCTTTCAACATGAGTGCCGCGCAGCGTTTTGGTCTTGCACAACAACCTGATAGTTACGCCGCGAGTGGTTTTCAATTGCAGAATAGGCAATTTGGGAGAGATTTTATTGGTGGGCAACTTTTGCGTGACTATGTAGGATGA

Protein sequence

>MS.gene46071.t1

MNHVYNDGGSSSNNNEVMLLKSEPLSLSLSSNKNNQNQMSAADFQRYGSVVDHVSRNTVPLGPFTGYASVLKGSRFLKPAQQLLDEICDVGVRAEKIIAAADASLMETNHVNGGMINGVDDDTLGDDGRKNKSRLLTVLDEVCRRYRQYYQQIHAVITSFEYVSGLGNAAPYASLAINAMSKHFRFLKNVITDQLQYIGKSNYQISNRKDESPRFHNGDGAPYSQRPGFVEHVQHPVWRPQRGLPERAVSVLRGWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQSPKESQRDEHSRNNLCENNIAENPSTSTDKFHDVAYKRTRNELHNMSVPNHSIASNQQVGNVGVSMMNNGATSNGVSLTLGLHQNHGIGLSEPFNMSAAQRFGLAQQPDSYAASGFQLQNRQFGRDFIGGQLLRDYVG