AlfalfaGEDB | MS.gene46118

M. sativa cultivar XinJiangDaYe / MS.gene46118

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46118.t1	PNY02937.1	25.5	274	134	6	18	227	5	272	1.50E-11	80.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46118.t1	A0A2K3NIT4	25.5	274	134	6	18	227	5	272	1.1e-11	80.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene46118.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46118.t1	MTR_0010s0290	38.835	103	59	2	29	129	35	135	4.71e-15	73.2
MS.gene46118.t1	MTR_5g078270	37.500	104	56	3	31	128	15	115	4.10e-13	67.4
MS.gene46118.t1	MTR_2g012700	29.825	114	67	3	109	222	19	119	3.67e-12	61.6
MS.gene46118.t1	MTR_2g062330	29.252	147	89	5	76	222	7	138	2.03e-11	60.5
MS.gene46118.t1	MTR_1g054480	36.190	105	64	3	27	130	11	113	2.59e-11	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 56 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAACCTTTACTTGGT+GGG	0.526436	7.2:+40984201	MS.gene46118:CDS
AAAGGTATCTTACAGAAGGC+TGG	0.532878	7.2:+40984286	MS.gene46118:CDS
AACATCCATCTTGAACTTAT+TGG	0.136818	7.2:-40982139	None:intergenic
AACCTTTACTTGGTGGGTAG+TGG	0.423355	7.2:+40984207	MS.gene46118:CDS
AACTGTGATTCATCCAGATC+TGG	0.470305	7.2:+40981805	MS.gene46118:CDS
AAGGCTGGTATGAATTTGTT+AGG	0.290399	7.2:+40984301	MS.gene46118:CDS
AATGAAAGGTATCTTACAGA+AGG	0.566126	7.2:+40984282	MS.gene46118:CDS
AGAGGCCAATAAGTTCAAGA+TGG	0.609279	7.2:+40982134	MS.gene46118:CDS
AGGCTGGTATGAATTTGTTA+GGG	0.513416	7.2:+40984302	MS.gene46118:CDS
AGGGATAACAAGCTGAGGGT+GGG	0.610095	7.2:+40984321	MS.gene46118:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATCCATCTTGAACTTAT+TGG	-	chr7.2:40982142-40982161	None:intergenic	30.0%
ACCTCTGCAAAGTATATAAT+TGG	+	chr7.2:40982379-40982398	MS.gene46118:intron	30.0%
ATCACAGTTTCGAAGAATTT+AGG	-	chr7.2:40981794-40981813	None:intergenic	30.0%
ATGAAAGACCATTCATTGTA+GGG	+	chr7.2:40983314-40983333	MS.gene46118:intron	30.0%
ATTAAACATCCCAAACTTTC+TGG	-	chr7.2:40983417-40983436	None:intergenic	30.0%
CAAGGATACTAAAGTTGTAT+TGG	+	chr7.2:40982862-40982881	MS.gene46118:intron	30.0%
CATATGGTTAAACAAAGATG+CGG	-	chr7.2:40982463-40982482	None:intergenic	30.0%
CATTTACGAACAAAGTCAAT+CGG	-	chr7.2:40981943-40981962	None:intergenic	30.0%
CTTTGTTCGTAAATGGTATA+TGG	+	chr7.2:40981948-40981967	MS.gene46118:CDS	30.0%
GAATGGTCTTTCATGTAAAA+TGG	-	chr7.2:40983308-40983327	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	40981415	40984422	40981415	ID=MS.gene46118
chr7.2	mRNA	40981415	40984422	40981415	ID=MS.gene46118.t1;Parent=MS.gene46118
chr7.2	exon	40981415	40981476	40981415	ID=MS.gene46118.t1.exon1;Parent=MS.gene46118.t1
chr7.2	CDS	40981415	40981476	40981415	ID=cds.MS.gene46118.t1;Parent=MS.gene46118.t1
chr7.2	exon	40981754	40981826	40981754	ID=MS.gene46118.t1.exon2;Parent=MS.gene46118.t1
chr7.2	CDS	40981754	40981826	40981754	ID=cds.MS.gene46118.t1;Parent=MS.gene46118.t1
chr7.2	exon	40981925	40982206	40981925	ID=MS.gene46118.t1.exon3;Parent=MS.gene46118.t1
chr7.2	CDS	40981925	40982206	40981925	ID=cds.MS.gene46118.t1;Parent=MS.gene46118.t1
chr7.2	exon	40984153	40984422	40984153	ID=MS.gene46118.t1.exon4;Parent=MS.gene46118.t1
chr7.2	CDS	40984153	40984422	40984153	ID=cds.MS.gene46118.t1;Parent=MS.gene46118.t1

Gene Sequence

>MS.gene46118

ATGCATCGTCCATCAAAGCCAAACTCCTCATCGCTGAAAGGAATTGAACCTTCCTCAAAGAGGTACGATATTTTGAACAAATTCATCATCCTCGTTGATGAATCTCTTCCTATTCTAGGTTTTTTTTCTTCAACAAAAATCCCTTTTTTATTGCAATCTTTTATGTTGTATGAATCATTAAATGTATAAATGAACGGTTTAGCAATGAAAACAGATTATATGTTGTTGAATTGTTTTGAATAGCTTTACCGATTATATACATGGTAACAGTAACACTAAATGTGTTGAAAAGGGTTGATTTTTCCATTTATATATTTTAAAAGAATGTTATTGATGTAGGGTTTGCAAAGGAGAAAGTTCTTCCAACAATGGAAAACCTAAATTCTTCGAAACTGTGATTCATCCAGATCTGGTATATGTGTTGATCATAGAAGATTTATGTTTATTTATAATATGGGAAAACACTATTCTTCAAAATCATTGTTAATGATATATGTTTATTTCTTATAGGATCGTATTGACTTGCCGATTGACTTTGTTCGTAAATGGTATATGGAGCTTAGAGCTAGTAACCTTGGATGGATTAAGCTCCCAAACGGAAATCTGTACTTGGCCAGAATGTATACTACTGGATTAAATCAGTACATGGAATCTGGGATTCAGGTGGCACTAAGGTGTGGATTTACAGTGCCTATGAGAGTTAAGCTACATTATCTTGTAGAGGCCAATAAGTTCAAGATGGATGTTTTAGGTCTTGATGGACAACTTGGCAAGTCGATGAACAATCCATTGGTCATATCTGATGATGATAACAATAATAGTGATTTAGATTTTGATGTTGAAAGTGATGATGATCCTGATGATGTTGATGGTATTGAGGAAGATGATAGTGATGCTGATTCTGATGATGATACCGATGATGATGATACTGATGGCGATTGGCTTCATCGTGATCTTGATCCATACCTCTGCAAAGTATATAATTGGAGACGTGTTGTTTCGAAAGCTCTTGCATGGAAGAAAAAACCACAAGCACTGGTATGTTCCGCATCTTTGTTTAACCATATGCTTACCAGTTCCAGTTTTGCTGTGTTATAATACCTTTGTCCATTTCTTAAAAGCGTTGTTGTATTGAGAAAGCGAATAAAACTTAAAAGTACATAAAGCATTTCTTAATCTGAACGTCTTAATAATAGCCACACCAAAGATAACATCCGTAGAAAATGTGTTTTTCACTAATTGTGCTTTCCTCAACTATCAAACCCCGAAACTTCTAACTGCGTATTCAATGGTGCATATACGGGTGTTAACTTAAGGTGTGGCCTTCTAGTTTCATCAAAATTCTTGATGAATTATTACTCGGTTTAACAAGGCTAAGTAAAAGCTGAATTTTGAAATTCCTTCTCACTCAAGTTACCAATGCAAGTCACAAGCAATAAGCCAATAACAAGGATACTAAAGTTGTATTGGAGTTTCACATTCCCAATCTTCACATATACTTGCACATAATAATAATCTTTGAAGAGGGGTGCGCATGCTAAGAATATTATCTTTTCAACGCTCTCTCTAACACTCGTTCAGTTTTGGAGTGAAATCTATAGGGGTATGACCATTTTATGTGAGACCTATTTTCAAAATGTAAGACCCACATTTATTTCACAAATGCAAAAACGAGTGCCTGAGAGTGTTTCTAATACTTCTCTTATTTAATTATTTTTTTTTTGAGAATGAAACTCAAGCTCGGTGAATATCTATTTTTTAAAATGGTGAAGGTGGATGTTGAAATTGAATTGAAATACCACATTGTCAAGTCATAGTTTGTGCTACAGCTTATTTGTTTGAATAAAGGACAAAATACCAGTTTCATTGCCTAAGTAAGAATGAAAAATTCCATTTTACATGAAAGACCATTCATTGTAGGGGAAGAATTTCAAAATTTAAATTGGATCTAAATGTACTTTTTTATTTACCATAGGCAAAAATGGATCCCCATTTTCCACCAGAAAGTTTGGGATGTTTAATTTCTTGTAATTTCTTACTGTCTTTTCGATTTTTTTTTTTTACCAAAGCATTCTTCTTGTAAGTACTATTGTTTCTGAAGGACAGAAGGAGTAAGAACTATTATTATAGTCGTCATAAATATTGCTATTATACTTGTGTAGATTCTTGAAAAATAAAAGTATATTGGTGTAGGTTTTTCTTCTTCTAAATTTATTATTTGTTTAACTTTTTTATATGTTAAATTTTGTTTACTTAATCAAATAATTTAATTTAATCTAATTTTTTATTTAAGATAAAATCAATTTGATTTAATCCAGTTTTTTATTTAGGATAAAATCTAAAATAATTTAATGATAATTCAAATTTAAATAAAAAATATAGTAATTAAAATAAAAGTAGTTTTGACAAGACAAAACTTATTGAATTTGCAAAGTTTTTTTCTCCAAATTTTTCGCACCCCCTGGACCAAGGTCCTGGATACGCCACTTAGTCATAAACTCATAATTGACTGTTAGATCAAGTGCATGTATGTATGTGTCTACTTTCAACCCAAAGGGCTAGTAGTCATAAACTCATAATTTGTATTGTAATCCTTGTACTTTAGTATGTTAATTTTCATCCATCATATTACCATAGGGAATACTTGTGCTGCAATTTAAATTAAGCACGTTGACTGTATATGACCATTGGATTTGATTTGTGACCATATATACACACATACACTTTTGTTTTTGTAGAATTTGCCAGCCAAAACTTGTGAGATTGCCATCCCAGTCACACAGTCTAAAATTAACCTTTACTTGGTGGGTAGTGGAGCAATCTATGAATGCACACTCAAAAATTCAAACAGAAGAATATATTCTCAAAATGAAAGGTATCTTACAGAAGGCTGGTATGAATTTGTTAGGGATAACAAGCTGAGGGTGGGAGACAAGTTACTGTTTTGTCTCAATAAACCAACTGATAAGCTGTTTGTGAGAATTGTTCGCCGTTCTGCTCTTGGATGA

Protein sequence

>MS.gene46118.t1

MHRPSKPNSSSLKGIEPSSKRVCKGESSSNNGKPKFFETVIHPDLDRIDLPIDFVRKWYMELRASNLGWIKLPNGNLYLARMYTTGLNQYMESGIQVALRCGFTVPMRVKLHYLVEANKFKMDVLGLDGQLGKSMNNPLNLPAKTCEIAIPVTQSKINLYLVGSGAIYECTLKNSNRRIYSQNERYLTEGWYEFVRDNKLRVGDKLLFCLNKPTDKLFVRIVRRSALG