Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46118.t1 | PNY02937.1 | 25.5 | 274 | 134 | 6 | 18 | 227 | 5 | 272 | 1.50E-11 | 80.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46118.t1 | A0A2K3NIT4 | 25.5 | 274 | 134 | 6 | 18 | 227 | 5 | 272 | 1.1e-11 | 80.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene46118.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46118.t1 | MTR_0010s0290 | 38.835 | 103 | 59 | 2 | 29 | 129 | 35 | 135 | 4.71e-15 | 73.2 |
| MS.gene46118.t1 | MTR_5g078270 | 37.500 | 104 | 56 | 3 | 31 | 128 | 15 | 115 | 4.10e-13 | 67.4 |
| MS.gene46118.t1 | MTR_2g012700 | 29.825 | 114 | 67 | 3 | 109 | 222 | 19 | 119 | 3.67e-12 | 61.6 |
| MS.gene46118.t1 | MTR_2g062330 | 29.252 | 147 | 89 | 5 | 76 | 222 | 7 | 138 | 2.03e-11 | 60.5 |
| MS.gene46118.t1 | MTR_1g054480 | 36.190 | 105 | 64 | 3 | 27 | 130 | 11 | 113 | 2.59e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATCCATCTTGAACTTAT+TGG | 0.136818 | 7.2:-40982139 | None:intergenic |
| CGATTGACTTTGTTCGTAAA+TGG | 0.194038 | 7.2:+40981941 | MS.gene46118:CDS |
| CTTTGTTCGTAAATGGTATA+TGG | 0.238429 | 7.2:+40981948 | MS.gene46118:CDS |
| ATCACAGTTTCGAAGAATTT+AGG | 0.258276 | 7.2:-40981791 | None:intergenic |
| AAGGCTGGTATGAATTTGTT+AGG | 0.290399 | 7.2:+40984301 | MS.gene46118:CDS |
| GATGGCAATCTCACAAGTTT+TGG | 0.322191 | 7.2:-40984163 | None:intergenic |
| ATTGTTCGCCGTTCTGCTCT+TGG | 0.322716 | 7.2:+40984396 | MS.gene46118:CDS |
| CCTTTCAGCGATGAGGAGTT+TGG | 0.326336 | 7.2:-40981433 | None:intergenic |
| GATGAGGAGTTTGGCTTTGA+TGG | 0.356109 | 7.2:-40981424 | None:intergenic |
| TTAAATCAGTACATGGAATC+TGG | 0.356959 | 7.2:+40982048 | MS.gene46118:CDS |
| CCAAGTACAGATTTCCGTTT+GGG | 0.357381 | 7.2:-40982005 | None:intergenic |
| GTACATGGAATCTGGGATTC+AGG | 0.367539 | 7.2:+40982056 | MS.gene46118:CDS |
| CAAAATATCGTACCTCTTTG+AGG | 0.387393 | 7.2:-40981467 | None:intergenic |
| GTCTAAAATTAACCTTTACT+TGG | 0.409383 | 7.2:+40984197 | MS.gene46118:CDS |
| TAATCCAGTAGTATACATTC+TGG | 0.423183 | 7.2:-40982028 | None:intergenic |
| AACCTTTACTTGGTGGGTAG+TGG | 0.423355 | 7.2:+40984207 | MS.gene46118:CDS |
| ATCAACACATATACCAGATC+TGG | 0.450296 | 7.2:-40981818 | None:intergenic |
| CCCAAACGGAAATCTGTACT+TGG | 0.452306 | 7.2:+40982005 | MS.gene46118:CDS |
| GCCAAGTACAGATTTCCGTT+TGG | 0.455129 | 7.2:-40982006 | None:intergenic |
| TAATGTAGCTTAACTCTCAT+AGG | 0.469850 | 7.2:-40982105 | None:intergenic |
| AACTGTGATTCATCCAGATC+TGG | 0.470305 | 7.2:+40981805 | MS.gene46118:CDS |
| TAAAATTAACCTTTACTTGG+TGG | 0.480947 | 7.2:+40984200 | MS.gene46118:CDS |
| TTGGCCAGAATGTATACTAC+TGG | 0.499830 | 7.2:+40982024 | MS.gene46118:CDS |
| AGGCTGGTATGAATTTGTTA+GGG | 0.513416 | 7.2:+40984302 | MS.gene46118:CDS |
| TTAGGTCTTGATGGACAACT+TGG | 0.514295 | 7.2:+40982162 | MS.gene46118:CDS |
| CTCACAAACAGCTTATCAGT+TGG | 0.522596 | 7.2:-40984372 | None:intergenic |
| TAAATCAGTACATGGAATCT+GGG | 0.526053 | 7.2:+40982049 | MS.gene46118:CDS |
| AAAATTAACCTTTACTTGGT+GGG | 0.526436 | 7.2:+40984201 | MS.gene46118:CDS |
| CATTTACGAACAAAGTCAAT+CGG | 0.528619 | 7.2:-40981940 | None:intergenic |
| GAGCTTAGAGCTAGTAACCT+TGG | 0.530044 | 7.2:+40981970 | MS.gene46118:CDS |
| AAAGGTATCTTACAGAAGGC+TGG | 0.532878 | 7.2:+40984286 | MS.gene46118:CDS |
| TTAGAGCTAGTAACCTTGGA+TGG | 0.533014 | 7.2:+40981974 | MS.gene46118:CDS |
| CTGGGATTCAGGTGGCACTA+AGG | 0.535418 | 7.2:+40982067 | MS.gene46118:CDS |
| CTCCACTACCCACCAAGTAA+AGG | 0.550190 | 7.2:-40984209 | None:intergenic |
| GGATGGATTAAGCTCCCAAA+CGG | 0.561998 | 7.2:+40981991 | MS.gene46118:CDS |
| AATGAAAGGTATCTTACAGA+AGG | 0.566126 | 7.2:+40984282 | MS.gene46118:CDS |
| CCAAACTCCTCATCGCTGAA+AGG | 0.570191 | 7.2:+40981433 | MS.gene46118:CDS |
| ATATCGTACCTCTTTGAGGA+AGG | 0.570920 | 7.2:-40981463 | None:intergenic |
| TTCAATTCCTTTCAGCGATG+AGG | 0.573510 | 7.2:-40981440 | None:intergenic |
| TTGGGAGCTTAATCCATCCA+AGG | 0.576601 | 7.2:-40981987 | None:intergenic |
| TAAGCTACATTATCTTGTAG+AGG | 0.576700 | 7.2:+40982116 | MS.gene46118:CDS |
| TACTGGATTAAATCAGTACA+TGG | 0.576769 | 7.2:+40982041 | MS.gene46118:CDS |
| TATTGATGTAGGGTTTGCAA+AGG | 0.577704 | 7.2:+40981743 | MS.gene46118:intron |
| GGAGAAAGTTCTTCCAACAA+TGG | 0.583481 | 7.2:+40981764 | MS.gene46118:CDS |
| GAATATATTCTCAAAATGAA+AGG | 0.587129 | 7.2:+40984268 | MS.gene46118:CDS |
| ATTCAGGTGGCACTAAGGTG+TGG | 0.593911 | 7.2:+40982072 | MS.gene46118:CDS |
| CAAGTCGATGAACAATCCAT+TGG | 0.601534 | 7.2:+40982185 | MS.gene46118:CDS |
| TTGTTAGGGATAACAAGCTG+AGG | 0.605523 | 7.2:+40984316 | MS.gene46118:CDS |
| AGAGGCCAATAAGTTCAAGA+TGG | 0.609279 | 7.2:+40982134 | MS.gene46118:CDS |
| AGGGATAACAAGCTGAGGGT+GGG | 0.610095 | 7.2:+40984321 | MS.gene46118:CDS |
| TAGGGATAACAAGCTGAGGG+TGG | 0.620885 | 7.2:+40984320 | MS.gene46118:CDS |
| TGTTAGGGATAACAAGCTGA+GGG | 0.634705 | 7.2:+40984317 | MS.gene46118:CDS |
| TTTAGACTGTGTGACTGGGA+TGG | 0.645506 | 7.2:-40984181 | None:intergenic |
| ATCTTCATCCAAGAGCAGAA+CGG | 0.662274 | 7.2:-40984404 | None:intergenic |
| CATGGAATCTGGGATTCAGG+TGG | 0.681198 | 7.2:+40982059 | MS.gene46118:CDS |
| GAATTGAACCTTCCTCAAAG+AGG | 0.691465 | 7.2:+40981455 | MS.gene46118:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATTTCAAAATTTAAAT+TGG | + | chr7.2:40983338-40983357 | MS.gene46118:intron | 10.0% |
| !!! | TGAATATCTATTTTTTAAAA+TGG | + | chr7.2:40983159-40983178 | MS.gene46118:intron | 10.0% |
| !! | ATAAAAGATTGCAATAAAAA+AGG | - | chr7.2:40981559-40981578 | None:intergenic | 15.0% |
| !! | TAAAAGATTGCAATAAAAAA+GGG | - | chr7.2:40981558-40981577 | None:intergenic | 15.0% |
| !! | TCATTAAATGTATAAATGAA+CGG | + | chr7.2:40981589-40981608 | MS.gene46118:intron | 15.0% |
| !!! | ATAATAATAATCTTTGAAGA+GGG | + | chr7.2:40982920-40982939 | MS.gene46118:intron | 15.0% |
| !!! | CTTGAAAAATAAAAGTATAT+TGG | + | chr7.2:40983580-40983599 | MS.gene46118:intron | 15.0% |
| !!! | GATATATGTTTATTTCTTAT+AGG | + | chr7.2:40981903-40981922 | MS.gene46118:intron | 15.0% |
| !!! | TTTAATCCAGTTTTTTATTT+AGG | + | chr7.2:40983723-40983742 | MS.gene46118:intron | 15.0% |
| !!! | TTTTATCCTAAATAAAAAAC+TGG | - | chr7.2:40983732-40983751 | None:intergenic | 15.0% |
| !! | AAAAGAATGTTATTGATGTA+GGG | + | chr7.2:40981733-40981752 | MS.gene46118:intron | 20.0% |
| !! | AATTAACATACTAAAGTACA+AGG | - | chr7.2:40984010-40984029 | None:intergenic | 20.0% |
| !! | ATTCTTGATGAATTATTACT+CGG | + | chr7.2:40982755-40982774 | MS.gene46118:intron | 20.0% |
| !! | GAATATATTCTCAAAATGAA+AGG | + | chr7.2:40984268-40984287 | MS.gene46118:CDS | 20.0% |
| !! | TAAAAGAATGTTATTGATGT+AGG | + | chr7.2:40981732-40981751 | MS.gene46118:intron | 20.0% |
| !!! | AAATAAAAGTATATTGGTGT+AGG | + | chr7.2:40983586-40983605 | MS.gene46118:intron | 20.0% |
| !!! | CATAATAATAATCTTTGAAG+AGG | + | chr7.2:40982919-40982938 | MS.gene46118:intron | 20.0% |
| !!! | TAATAATAATCTTTGAAGAG+GGG | + | chr7.2:40982921-40982940 | MS.gene46118:intron | 20.0% |
| !!! | TCTATTTTTTAAAATGGTGA+AGG | + | chr7.2:40983165-40983184 | MS.gene46118:intron | 20.0% |
| !!! | TGTACTTTTTTATTTACCAT+AGG | + | chr7.2:40983368-40983387 | MS.gene46118:intron | 20.0% |
| ! | AAAATAGGTCTCACATAAAA+TGG | - | chr7.2:40983027-40983046 | None:intergenic | 25.0% |
| ! | AAAATTAACCTTTACTTGGT+GGG | + | chr7.2:40984201-40984220 | MS.gene46118:CDS | 25.0% |
| ! | AAAGTGTATGTGTGTATATA+TGG | - | chr7.2:40984122-40984141 | None:intergenic | 25.0% |
| ! | AACACTAAATGTGTTGAAAA+GGG | + | chr7.2:40981686-40981705 | MS.gene46118:intron | 25.0% |
| ! | AATTATTACTCGGTTTAACA+AGG | + | chr7.2:40982765-40982784 | MS.gene46118:intron | 25.0% |
| ! | ACTGTTACCATGTATATAAT+CGG | - | chr7.2:40981666-40981685 | None:intergenic | 25.0% |
| ! | ATTATGAGTTTATGACTAAG+TGG | - | chr7.2:40983901-40983920 | None:intergenic | 25.0% |
| ! | CAGCTTATTTGTTTGAATAA+AGG | + | chr7.2:40983241-40983260 | MS.gene46118:intron | 25.0% |
| ! | GAAGAAAAAAAACCTAGAAT+AGG | - | chr7.2:40981526-40981545 | None:intergenic | 25.0% |
| ! | TAAAATTAACCTTTACTTGG+TGG | + | chr7.2:40984200-40984219 | MS.gene46118:CDS | 25.0% |
| ! | TAACACTAAATGTGTTGAAA+AGG | + | chr7.2:40981685-40981704 | MS.gene46118:intron | 25.0% |
| ! | TGCATTTGTGAAATAAATGT+GGG | - | chr7.2:40983062-40983081 | None:intergenic | 25.0% |
| ! | TTATTTACCATAGGCAAAAA+TGG | + | chr7.2:40983377-40983396 | MS.gene46118:intron | 25.0% |
| ! | TTGCATTTGTGAAATAAATG+TGG | - | chr7.2:40983063-40983082 | None:intergenic | 25.0% |
| !! | AACTTTAGTATCCTTGTTAT+TGG | - | chr7.2:40982858-40982877 | None:intergenic | 25.0% |
| !! | AGTGAAAAACACATTTTCTA+CGG | - | chr7.2:40982632-40982651 | None:intergenic | 25.0% |
| !! | GGAATTTTTCATTCTTACTT+AGG | - | chr7.2:40983287-40983306 | None:intergenic | 25.0% |
| !! | GTCTAAAATTAACCTTTACT+TGG | + | chr7.2:40984197-40984216 | MS.gene46118:CDS | 25.0% |
| !!! | AGAATTTTGATGAAACTAGA+AGG | - | chr7.2:40982740-40982759 | None:intergenic | 25.0% |
| !!! | ATTTTTTAAAATGGTGAAGG+TGG | + | chr7.2:40983168-40983187 | MS.gene46118:intron | 25.0% |
| AACATCCATCTTGAACTTAT+TGG | - | chr7.2:40982142-40982161 | None:intergenic | 30.0% | |
| ACCTCTGCAAAGTATATAAT+TGG | + | chr7.2:40982379-40982398 | MS.gene46118:intron | 30.0% | |
| ATCACAGTTTCGAAGAATTT+AGG | - | chr7.2:40981794-40981813 | None:intergenic | 30.0% | |
| ATGAAAGACCATTCATTGTA+GGG | + | chr7.2:40983314-40983333 | MS.gene46118:intron | 30.0% | |
| ATTAAACATCCCAAACTTTC+TGG | - | chr7.2:40983417-40983436 | None:intergenic | 30.0% | |
| CAAGGATACTAAAGTTGTAT+TGG | + | chr7.2:40982862-40982881 | MS.gene46118:intron | 30.0% | |
| CATATGGTTAAACAAAGATG+CGG | - | chr7.2:40982463-40982482 | None:intergenic | 30.0% | |
| CATTTACGAACAAAGTCAAT+CGG | - | chr7.2:40981943-40981962 | None:intergenic | 30.0% | |
| CTTTGTTCGTAAATGGTATA+TGG | + | chr7.2:40981948-40981967 | MS.gene46118:CDS | 30.0% | |
| GAATGGTCTTTCATGTAAAA+TGG | - | chr7.2:40983308-40983327 | None:intergenic | 30.0% | |
| GTATTATAACACAGCAAAAC+TGG | - | chr7.2:40982496-40982515 | None:intergenic | 30.0% | |
| TAAATCAGTACATGGAATCT+GGG | + | chr7.2:40982049-40982068 | MS.gene46118:CDS | 30.0% | |
| TAAGCTACATTATCTTGTAG+AGG | + | chr7.2:40982116-40982135 | MS.gene46118:CDS | 30.0% | |
| TAATCCAGTAGTATACATTC+TGG | - | chr7.2:40982031-40982050 | None:intergenic | 30.0% | |
| TAATGTAGCTTAACTCTCAT+AGG | - | chr7.2:40982108-40982127 | None:intergenic | 30.0% | |
| TACTGGATTAAATCAGTACA+TGG | + | chr7.2:40982041-40982060 | MS.gene46118:CDS | 30.0% | |
| TACTTACAAGAAGAATGCTT+TGG | - | chr7.2:40983481-40983500 | None:intergenic | 30.0% | |
| TATTCCCTATGGTAATATGA+TGG | - | chr7.2:40984038-40984057 | None:intergenic | 30.0% | |
| TCATCCATCATATTACCATA+GGG | + | chr7.2:40984031-40984050 | MS.gene46118:intron | 30.0% | |
| TCCAATTATATACTTTGCAG+AGG | - | chr7.2:40982383-40982402 | None:intergenic | 30.0% | |
| TGCAAGTATATGTGAAGATT+GGG | - | chr7.2:40982899-40982918 | None:intergenic | 30.0% | |
| TTAAATCAGTACATGGAATC+TGG | + | chr7.2:40982048-40982067 | MS.gene46118:CDS | 30.0% | |
| TTATATACTTTGCAGAGGTA+TGG | - | chr7.2:40982378-40982397 | None:intergenic | 30.0% | |
| TTCATCCATCATATTACCAT+AGG | + | chr7.2:40984030-40984049 | MS.gene46118:intron | 30.0% | |
| ! | AAGTTCAAGATGGATGTTTT+AGG | + | chr7.2:40982144-40982163 | MS.gene46118:CDS | 30.0% |
| ! | AGCTTTACCGATTATATACA+TGG | + | chr7.2:40981656-40981675 | MS.gene46118:intron | 30.0% |
| ! | TAATTTTAGACTGTGTGACT+GGG | - | chr7.2:40984188-40984207 | None:intergenic | 30.0% |
| ! | TTAATTTTAGACTGTGTGAC+TGG | - | chr7.2:40984189-40984208 | None:intergenic | 30.0% |
| ! | TTTTCTACGGATGTTATCTT+TGG | - | chr7.2:40982619-40982638 | None:intergenic | 30.0% |
| !! | AATGAAAGGTATCTTACAGA+AGG | + | chr7.2:40984282-40984301 | MS.gene46118:CDS | 30.0% |
| !! | ACAACAACGCTTTTAAGAAA+TGG | - | chr7.2:40982525-40982544 | None:intergenic | 30.0% |
| !! | GAATTTAGGTTTTCCATTGT+TGG | - | chr7.2:40981780-40981799 | None:intergenic | 30.0% |
| !! | GGGTCTTACATTTTGAAAAT+AGG | - | chr7.2:40983042-40983061 | None:intergenic | 30.0% |
| !! | GTAAGTACTATTGTTTCTGA+AGG | + | chr7.2:40983494-40983513 | MS.gene46118:intron | 30.0% |
| !!! | AGTTTTGGAGTGAAATCTAT+AGG | + | chr7.2:40982994-40983013 | MS.gene46118:intron | 30.0% |
| !!! | GTTTTGGAGTGAAATCTATA+GGG | + | chr7.2:40982995-40983014 | MS.gene46118:intron | 30.0% |
| !!! | TTTTGGAGTGAAATCTATAG+GGG | + | chr7.2:40982996-40983015 | MS.gene46118:intron | 30.0% |
| AATACGCAGTTAGAAGTTTC+GGG | - | chr7.2:40982681-40982700 | None:intergenic | 35.0% | |
| AATTCTTCCCCTACAATGAA+TGG | - | chr7.2:40983325-40983344 | None:intergenic | 35.0% | |
| ACTTCTAACTGCGTATTCAA+TGG | + | chr7.2:40982684-40982703 | MS.gene46118:intron | 35.0% | |
| ATCAACACATATACCAGATC+TGG | - | chr7.2:40981821-40981840 | None:intergenic | 35.0% | |
| CAAAATATCGTACCTCTTTG+AGG | - | chr7.2:40981470-40981489 | None:intergenic | 35.0% | |
| CAAACTATGACTTGACAATG+TGG | - | chr7.2:40983216-40983235 | None:intergenic | 35.0% | |
| CAAGCAATAAGCCAATAACA+AGG | + | chr7.2:40982844-40982863 | MS.gene46118:intron | 35.0% | |
| CATATACGGGTGTTAACTTA+AGG | + | chr7.2:40982709-40982728 | MS.gene46118:intron | 35.0% | |
| CATGAAAGACCATTCATTGT+AGG | + | chr7.2:40983313-40983332 | MS.gene46118:intron | 35.0% | |
| CGTATTCAATGGTGCATATA+CGG | + | chr7.2:40982695-40982714 | MS.gene46118:intron | 35.0% | |
| GAATACGCAGTTAGAAGTTT+CGG | - | chr7.2:40982682-40982701 | None:intergenic | 35.0% | |
| GATGAATCTCTTCCTATTCT+AGG | + | chr7.2:40981511-40981530 | MS.gene46118:intron | 35.0% | |
| GTATTCAATGGTGCATATAC+GGG | + | chr7.2:40982696-40982715 | MS.gene46118:intron | 35.0% | |
| GTGCAAGTATATGTGAAGAT+TGG | - | chr7.2:40982900-40982919 | None:intergenic | 35.0% | |
| TATTGATGTAGGGTTTGCAA+AGG | + | chr7.2:40981743-40981762 | MS.gene46118:intron | 35.0% | |
| TCAATACCATCAACATCATC+AGG | - | chr7.2:40982273-40982292 | None:intergenic | 35.0% | |
| TCATCATCAGATATGACCAA+TGG | - | chr7.2:40982204-40982223 | None:intergenic | 35.0% | |
| TCTTACTTAGGCAATGAAAC+TGG | - | chr7.2:40983275-40983294 | None:intergenic | 35.0% | |
| TGAAAGACCATTCATTGTAG+GGG | + | chr7.2:40983315-40983334 | MS.gene46118:intron | 35.0% | |
| TGGTCACAAATCAAATCCAA+TGG | - | chr7.2:40984102-40984121 | None:intergenic | 35.0% | |
| TTGAGAATGAAACTCAAGCT+CGG | + | chr7.2:40983136-40983155 | MS.gene46118:intron | 35.0% | |
| TTTATGACTACTAGCCCTTT+GGG | - | chr7.2:40983967-40983986 | None:intergenic | 35.0% | |
| ! | AAACTTTCTGGTGGAAAATG+GGG | - | chr7.2:40983405-40983424 | None:intergenic | 35.0% |
| ! | AAGGCTGGTATGAATTTGTT+AGG | + | chr7.2:40984301-40984320 | MS.gene46118:CDS | 35.0% |
| ! | CAAACTTTCTGGTGGAAAAT+GGG | - | chr7.2:40983406-40983425 | None:intergenic | 35.0% |
| ! | CATTTTCCACCAGAAAGTTT+GGG | + | chr7.2:40983405-40983424 | MS.gene46118:intron | 35.0% |
| ! | CGATTGACTTTGTTCGTAAA+TGG | + | chr7.2:40981941-40981960 | MS.gene46118:CDS | 35.0% |
| ! | GAAGTATTAGAAACACTCTC+AGG | - | chr7.2:40983095-40983114 | None:intergenic | 35.0% |
| ! | TTATTGCTTGTGACTTGCAT+TGG | - | chr7.2:40982834-40982853 | None:intergenic | 35.0% |
| !! | AGGCTGGTATGAATTTGTTA+GGG | + | chr7.2:40984302-40984321 | MS.gene46118:CDS | 35.0% |
| !! | ATGGATGTTTTAGGTCTTGA+TGG | + | chr7.2:40982153-40982172 | MS.gene46118:CDS | 35.0% |
| !! | CGCTTTTAAGAAATGGACAA+AGG | - | chr7.2:40982518-40982537 | None:intergenic | 35.0% |
| !! | TATTGTTTCTGAAGGACAGA+AGG | + | chr7.2:40983502-40983521 | MS.gene46118:intron | 35.0% |
| !! | TGATGATGTTGATGGTATTG+AGG | + | chr7.2:40982272-40982291 | MS.gene46118:intron | 35.0% |
| AAACATCCCAAACTTTCTGG+TGG | - | chr7.2:40983414-40983433 | None:intergenic | 40.0% | |
| AACTGGAACTGGTAAGCATA+TGG | - | chr7.2:40982479-40982498 | None:intergenic | 40.0% | |
| AACTGTGATTCATCCAGATC+TGG | + | chr7.2:40981805-40981824 | MS.gene46118:CDS | 40.0% | |
| AGAGGCCAATAAGTTCAAGA+TGG | + | chr7.2:40982134-40982153 | MS.gene46118:CDS | 40.0% | |
| ATACGCAGTTAGAAGTTTCG+GGG | - | chr7.2:40982680-40982699 | None:intergenic | 40.0% | |
| CAAGTCGATGAACAATCCAT+TGG | + | chr7.2:40982185-40982204 | MS.gene46118:CDS | 40.0% | |
| CCAAGTACAGATTTCCGTTT+GGG | - | chr7.2:40982008-40982027 | None:intergenic | 40.0% | |
| CTCACAAACAGCTTATCAGT+TGG | - | chr7.2:40984375-40984394 | None:intergenic | 40.0% | |
| GAAGAAAAAACCACAAGCAC+TGG | + | chr7.2:40982431-40982450 | MS.gene46118:intron | 40.0% | |
| GAATTGAACCTTCCTCAAAG+AGG | + | chr7.2:40981455-40981474 | MS.gene46118:CDS | 40.0% | |
| GCCATCAGTATCATCATCAT+CGG | - | chr7.2:40982331-40982350 | None:intergenic | 40.0% | |
| GGAGAAAGTTCTTCCAACAA+TGG | + | chr7.2:40981764-40981783 | MS.gene46118:CDS | 40.0% | |
| GTGTCTACTTTCAACCCAAA+GGG | + | chr7.2:40983950-40983969 | MS.gene46118:intron | 40.0% | |
| GTTTATGACTACTAGCCCTT+TGG | - | chr7.2:40983968-40983987 | None:intergenic | 40.0% | |
| TAACACAGCAAAACTGGAAC+TGG | - | chr7.2:40982490-40982509 | None:intergenic | 40.0% | |
| TACGGATGTTATCTTTGGTG+TGG | - | chr7.2:40982614-40982633 | None:intergenic | 40.0% | |
| TAGGAAGAGATTCATCAACG+AGG | - | chr7.2:40981507-40981526 | None:intergenic | 40.0% | |
| TGTGTCTACTTTCAACCCAA+AGG | + | chr7.2:40983949-40983968 | MS.gene46118:intron | 40.0% | |
| TGTTAGGGATAACAAGCTGA+GGG | + | chr7.2:40984317-40984336 | MS.gene46118:CDS | 40.0% | |
| TTAGAGCTAGTAACCTTGGA+TGG | + | chr7.2:40981974-40981993 | MS.gene46118:CDS | 40.0% | |
| TTCAATTCCTTTCAGCGATG+AGG | - | chr7.2:40981443-40981462 | None:intergenic | 40.0% | |
| TTGGCCAGAATGTATACTAC+TGG | + | chr7.2:40982024-40982043 | MS.gene46118:CDS | 40.0% | |
| TTGTTAGGGATAACAAGCTG+AGG | + | chr7.2:40984316-40984335 | MS.gene46118:CDS | 40.0% | |
| TTGTTTCGAAAGCTCTTGCA+TGG | + | chr7.2:40982409-40982428 | MS.gene46118:intron | 40.0% | |
| ! | ACCGATGATGATGATACTGA+TGG | + | chr7.2:40982327-40982346 | MS.gene46118:intron | 40.0% |
| ! | ATATCGTACCTCTTTGAGGA+AGG | - | chr7.2:40981466-40981485 | None:intergenic | 40.0% |
| ! | ATGATGATACTGATGGCGAT+TGG | + | chr7.2:40982334-40982353 | MS.gene46118:intron | 40.0% |
| ! | CATTGGTAACTTGAGTGAGA+AGG | - | chr7.2:40982817-40982836 | None:intergenic | 40.0% |
| ! | CCAAACTTTCTGGTGGAAAA+TGG | - | chr7.2:40983407-40983426 | None:intergenic | 40.0% |
| ! | CCATTTTCCACCAGAAAGTT+TGG | + | chr7.2:40983404-40983423 | MS.gene46118:intron | 40.0% |
| ! | CGTTGACTGTATATGACCAT+TGG | + | chr7.2:40984083-40984102 | MS.gene46118:intron | 40.0% |
| ! | CTCTAACACTCGTTCAGTTT+TGG | + | chr7.2:40982979-40982998 | MS.gene46118:intron | 40.0% |
| ! | GATGATCCTGATGATGTTGA+TGG | + | chr7.2:40982264-40982283 | MS.gene46118:intron | 40.0% |
| ! | GATGGCAATCTCACAAGTTT+TGG | - | chr7.2:40984166-40984185 | None:intergenic | 40.0% |
| ! | TTAGGTCTTGATGGACAACT+TGG | + | chr7.2:40982162-40982181 | MS.gene46118:CDS | 40.0% |
| !! | AAAGGTATCTTACAGAAGGC+TGG | + | chr7.2:40984286-40984305 | MS.gene46118:CDS | 40.0% |
| ACGGGTGTTAACTTAAGGTG+TGG | + | chr7.2:40982714-40982733 | MS.gene46118:intron | 45.0% | |
| CCCAAACGGAAATCTGTACT+TGG | + | chr7.2:40982005-40982024 | MS.gene46118:CDS | 45.0% | |
| GAGCTTAGAGCTAGTAACCT+TGG | + | chr7.2:40981970-40981989 | MS.gene46118:CDS | 45.0% | |
| GCCAAGTACAGATTTCCGTT+TGG | - | chr7.2:40982009-40982028 | None:intergenic | 45.0% | |
| TATGACTAAGTGGCGTATCC+AGG | - | chr7.2:40983891-40983910 | None:intergenic | 45.0% | |
| TGCAGCACAAGTATTCCCTA+TGG | - | chr7.2:40984049-40984068 | None:intergenic | 45.0% | |
| TTGGGAGCTTAATCCATCCA+AGG | - | chr7.2:40981990-40982009 | None:intergenic | 45.0% | |
| TTTAGACTGTGTGACTGGGA+TGG | - | chr7.2:40984184-40984203 | None:intergenic | 45.0% | |
| ! | AACCTTTACTTGGTGGGTAG+TGG | + | chr7.2:40984207-40984226 | MS.gene46118:CDS | 45.0% |
| ! | GTACATGGAATCTGGGATTC+AGG | + | chr7.2:40982056-40982075 | MS.gene46118:CDS | 45.0% |
| ! | GTTTCGGGGTTTGATAGTTG+AGG | - | chr7.2:40982666-40982685 | None:intergenic | 45.0% |
| !! | GATGAGGAGTTTGGCTTTGA+TGG | - | chr7.2:40981427-40981446 | None:intergenic | 45.0% |
| !! | GCAATCTCACAAGTTTTGGC+TGG | - | chr7.2:40984162-40984181 | None:intergenic | 45.0% |
| !! | GGATGGATTAAGCTCCCAAA+CGG | + | chr7.2:40981991-40982010 | MS.gene46118:CDS | 45.0% |
| !! | TGGGGATCCATTTTTGCCTA+TGG | - | chr7.2:40983387-40983406 | None:intergenic | 45.0% |
| !! | ATTTATGTTTATTTATAATA+TGG | + | chr7.2:40981849-40981868 | MS.gene46118:intron | 5.0% |
| !! | TTTATGTTTATTTATAATAT+GGG | + | chr7.2:40981850-40981869 | MS.gene46118:intron | 5.0% |
| !!! | ATTCTTTTAAAATATATAAA+TGG | - | chr7.2:40981721-40981740 | None:intergenic | 5.0% |
| AGGGATAACAAGCTGAGGGT+GGG | + | chr7.2:40984321-40984340 | MS.gene46118:CDS | 50.0% | |
| ATTCAGGTGGCACTAAGGTG+TGG | + | chr7.2:40982072-40982091 | MS.gene46118:CDS | 50.0% | |
| ATTGTTCGCCGTTCTGCTCT+TGG | + | chr7.2:40984396-40984415 | MS.gene46118:CDS | 50.0% | |
| CCAAACTCCTCATCGCTGAA+AGG | + | chr7.2:40981433-40981452 | MS.gene46118:CDS | 50.0% | |
| CCTTTCAGCGATGAGGAGTT+TGG | - | chr7.2:40981436-40981455 | None:intergenic | 50.0% | |
| CTCCACTACCCACCAAGTAA+AGG | - | chr7.2:40984212-40984231 | None:intergenic | 50.0% | |
| TAGGGATAACAAGCTGAGGG+TGG | + | chr7.2:40984320-40984339 | MS.gene46118:CDS | 50.0% | |
| ! | CATGGAATCTGGGATTCAGG+TGG | + | chr7.2:40982059-40982078 | MS.gene46118:CDS | 50.0% |
| ! | TCCAAATTTTTCGCACCCCC+TGG | + | chr7.2:40983857-40983876 | MS.gene46118:intron | 50.0% |
| ! | TCCAGGGGGTGCGAAAAATT+TGG | - | chr7.2:40983861-40983880 | None:intergenic | 50.0% |
| AAGTGGCGTATCCAGGACCT+TGG | - | chr7.2:40983884-40983903 | None:intergenic | 55.0% | |
| CTGGGATTCAGGTGGCACTA+AGG | + | chr7.2:40982067-40982086 | MS.gene46118:CDS | 55.0% | |
| GCGGAACATACCAGTGCTTG+TGG | - | chr7.2:40982444-40982463 | None:intergenic | 55.0% | |
| GTATCCAGGACCTTGGTCCA+GGG | - | chr7.2:40983877-40983896 | None:intergenic | 55.0% | |
| TATCCAGGACCTTGGTCCAG+GGG | - | chr7.2:40983876-40983895 | None:intergenic | 55.0% | |
| ATCCAGGACCTTGGTCCAGG+GGG | - | chr7.2:40983875-40983894 | None:intergenic | 60.0% | |
| CGTATCCAGGACCTTGGTCC+AGG | - | chr7.2:40983878-40983897 | None:intergenic | 60.0% | |
| ! | TTTTCGCACCCCCTGGACCA+AGG | + | chr7.2:40983864-40983883 | MS.gene46118:intron | 60.0% |
| CACCCCCTGGACCAAGGTCC+TGG | + | chr7.2:40983870-40983889 | MS.gene46118:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 40981415 | 40984422 | 40981415 | ID=MS.gene46118 |
| chr7.2 | mRNA | 40981415 | 40984422 | 40981415 | ID=MS.gene46118.t1;Parent=MS.gene46118 |
| chr7.2 | exon | 40981415 | 40981476 | 40981415 | ID=MS.gene46118.t1.exon1;Parent=MS.gene46118.t1 |
| chr7.2 | CDS | 40981415 | 40981476 | 40981415 | ID=cds.MS.gene46118.t1;Parent=MS.gene46118.t1 |
| chr7.2 | exon | 40981754 | 40981826 | 40981754 | ID=MS.gene46118.t1.exon2;Parent=MS.gene46118.t1 |
| chr7.2 | CDS | 40981754 | 40981826 | 40981754 | ID=cds.MS.gene46118.t1;Parent=MS.gene46118.t1 |
| chr7.2 | exon | 40981925 | 40982206 | 40981925 | ID=MS.gene46118.t1.exon3;Parent=MS.gene46118.t1 |
| chr7.2 | CDS | 40981925 | 40982206 | 40981925 | ID=cds.MS.gene46118.t1;Parent=MS.gene46118.t1 |
| chr7.2 | exon | 40984153 | 40984422 | 40984153 | ID=MS.gene46118.t1.exon4;Parent=MS.gene46118.t1 |
| chr7.2 | CDS | 40984153 | 40984422 | 40984153 | ID=cds.MS.gene46118.t1;Parent=MS.gene46118.t1 |
| Gene Sequence |
| Protein sequence |
