AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46172

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46172.t1 MTR_7g062220 93.581 296 19 0 1 296 1 296 0.0 581
MS.gene46172.t1 MTR_5g043880 41.509 159 74 5 124 273 124 272 6.47e-26 103
MS.gene46172.t1 MTR_4g094588 71.930 57 16 0 124 180 178 234 2.83e-23 97.8
MS.gene46172.t1 MTR_2g033820 52.941 85 29 1 124 197 203 287 8.97e-23 97.1
MS.gene46172.t1 MTR_1g086790 66.667 57 19 0 124 180 158 214 3.87e-22 94.7
MS.gene46172.t1 MTR_7g109800 38.217 157 72 5 124 268 145 288 6.46e-22 93.6
MS.gene46172.t1 MTR_1g015140 64.912 57 20 0 124 180 102 158 9.73e-22 89.7
MS.gene46172.t1 MTR_5g091390 66.667 57 19 0 124 180 157 213 2.32e-21 92.0
MS.gene46172.t1 MTR_8g092140 64.912 57 20 0 124 180 160 216 3.53e-21 90.1
MS.gene46172.t1 MTR_3g104750 63.158 57 21 0 124 180 104 160 3.94e-21 88.2
MS.gene46172.t1 MTR_3g095040 61.404 57 22 0 124 180 118 174 7.67e-21 88.6
MS.gene46172.t1 MTR_3g031220 64.912 57 20 0 124 180 365 421 8.90e-21 92.4
MS.gene46172.t1 MTR_3g031220 59.649 57 22 1 124 180 198 253 1.04e-14 74.3
MS.gene46172.t1 MTR_7g028415 61.404 57 22 0 124 180 93 149 8.95e-21 87.4
MS.gene46172.t1 MTR_7g028710 61.404 57 22 0 124 180 93 149 8.95e-21 87.4
MS.gene46172.t1 MTR_5g094430 63.158 57 21 0 124 180 230 286 1.18e-20 91.7
MS.gene46172.t1 MTR_5g094430 57.895 57 23 1 124 180 66 121 2.28e-13 70.1
MS.gene46172.t1 MTR_5g094430 63.158 57 21 0 124 180 252 308 1.18e-20 91.7
MS.gene46172.t1 MTR_5g094430 57.895 57 23 1 124 180 88 143 1.76e-13 70.5
MS.gene46172.t1 MTR_3g095080 64.912 57 20 0 124 180 168 224 1.22e-20 89.0
MS.gene46172.t1 MTR_3g095080 64.912 57 20 0 124 180 144 200 1.33e-20 88.2
MS.gene46172.t1 MTR_5g094430 63.158 57 21 0 124 180 364 420 1.38e-20 92.0
MS.gene46172.t1 MTR_5g094430 57.895 57 23 1 124 180 200 255 2.10e-13 70.5
MS.gene46172.t1 MTR_5g042920 62.712 59 22 0 122 180 318 376 1.53e-20 91.3
MS.gene46172.t1 MTR_5g042920 59.322 59 23 1 123 181 150 207 7.57e-15 74.7
MS.gene46172.t1 MTR_3g056100 63.158 57 21 0 124 180 402 458 1.97e-20 91.7
MS.gene46172.t1 MTR_3g056100 45.882 85 38 2 103 180 215 298 1.13e-13 71.6
MS.gene46172.t1 MTR_3g056100 63.158 57 21 0 124 180 415 471 2.02e-20 91.7
MS.gene46172.t1 MTR_3g056100 45.882 85 38 2 103 180 215 298 1.12e-13 71.6
MS.gene46172.t1 MTR_3g056100 63.158 57 21 0 124 180 258 314 2.06e-20 90.9
MS.gene46172.t1 MTR_3g056100 45.882 85 38 2 103 180 71 154 1.46e-13 70.9
MS.gene46172.t1 MTR_7g079010 63.158 57 21 0 124 180 141 197 2.26e-20 87.8
MS.gene46172.t1 MTR_3g056100 63.158 57 21 0 124 180 271 327 2.26e-20 90.9
MS.gene46172.t1 MTR_3g056100 45.882 85 38 2 103 180 71 154 1.42e-13 70.9
MS.gene46172.t1 MTR_4g122530 61.017 59 23 0 124 182 208 266 5.75e-20 89.7
MS.gene46172.t1 MTR_7g011820 61.017 59 23 0 122 180 408 466 1.15e-19 89.4
MS.gene46172.t1 MTR_7g011820 56.667 60 21 2 123 180 227 283 3.34e-13 70.1
MS.gene46172.t1 MTR_5g074400 63.158 57 21 0 124 180 420 476 1.29e-19 89.4
MS.gene46172.t1 MTR_5g074400 63.158 57 20 1 124 180 243 298 5.45e-16 78.6
MS.gene46172.t1 MTR_3g009470 63.158 57 21 0 124 180 495 551 1.43e-19 89.4
MS.gene46172.t1 MTR_3g009470 53.030 66 30 1 115 180 271 335 3.08e-14 73.2
MS.gene46172.t1 MTR_4g082580 59.322 59 24 0 122 180 276 334 4.10e-19 87.0
MS.gene46172.t1 MTR_4g082580 54.386 57 26 0 124 180 145 201 1.40e-14 73.6
MS.gene46172.t1 MTR_8g092010 55.932 59 26 0 122 180 106 164 4.33e-19 83.2
MS.gene46172.t1 MTR_8g007270 42.063 126 64 3 59 180 90 210 5.61e-19 84.0
MS.gene46172.t1 MTR_5g097490 57.377 61 26 0 120 180 248 308 8.48e-19 85.9
MS.gene46172.t1 MTR_1g009613 52.000 75 32 2 110 180 245 319 1.31e-18 85.1
MS.gene46172.t1 MTR_4g130900 48.684 76 38 1 106 180 340 415 1.65e-18 85.9
MS.gene46172.t1 MTR_7g071120 59.649 57 23 0 124 180 324 380 3.62e-18 84.7
MS.gene46172.t1 MTR_7g071120 61.017 59 18 2 124 180 166 221 8.17e-16 77.8
MS.gene46172.t1 MTR_7g100510 60.714 56 22 0 125 180 362 417 3.71e-18 84.3
MS.gene46172.t1 MTR_7g100510 58.929 56 22 1 125 180 190 244 1.33e-13 70.9
MS.gene46172.t1 MTR_4g013260 59.649 57 23 0 124 180 336 392 1.34e-17 83.2
MS.gene46172.t1 MTR_4g013260 59.649 57 23 0 124 180 184 240 3.27e-17 82.0
MS.gene46172.t1 MTR_7g109600 54.667 75 28 2 112 180 36 110 1.37e-17 80.9
MS.gene46172.t1 MTR_8g099350 33.333 150 88 5 36 178 45 189 1.72e-17 82.0
MS.gene46172.t1 MTR_4g127040 36.220 127 69 4 64 180 178 302 2.04e-17 81.3
MS.gene46172.t1 MTR_1g070455 48.101 79 37 2 110 184 276 354 2.07e-17 81.6
MS.gene46172.t1 MTR_7g080020 57.895 57 24 0 124 180 493 549 2.11e-17 82.8
MS.gene46172.t1 MTR_7g080020 54.839 62 27 1 119 180 275 335 2.29e-13 70.9
MS.gene46172.t1 MTR_7g080000 57.895 57 24 0 124 180 432 488 2.30e-17 82.8
MS.gene46172.t1 MTR_7g080000 53.571 56 25 1 125 180 235 289 2.01e-11 64.7
MS.gene46172.t1 MTR_8g096730 50.877 57 28 0 124 180 70 126 2.76e-17 77.4
MS.gene46172.t1 MTR_8g087000 51.899 79 36 2 107 184 60 137 3.92e-17 79.3
MS.gene46172.t1 MTR_3g108960 44.578 83 42 2 106 184 293 375 4.21e-17 81.3
MS.gene46172.t1 MTR_1g013760 49.333 75 37 1 125 198 141 215 4.40e-17 80.1
MS.gene46172.t1 MTR_8g087000 51.899 79 36 2 107 184 59 136 4.76e-17 79.0
MS.gene46172.t1 MTR_0117s0040 44.318 88 43 3 99 180 44 131 5.22e-17 79.0
MS.gene46172.t1 MTR_3g106060 44.944 89 46 3 125 211 139 226 8.12e-17 79.3
MS.gene46172.t1 MTR_5g016610 46.835 79 38 2 106 180 178 256 9.46e-17 79.0
MS.gene46172.t1 MTR_4g094908 46.835 79 38 2 106 180 245 323 1.08e-16 79.3
MS.gene46172.t1 MTR_6g053200 44.872 78 42 1 104 180 310 387 1.81e-16 79.7
MS.gene46172.t1 MTR_8g028565 48.718 78 37 2 106 182 139 214 1.95e-16 79.0
MS.gene46172.t1 MTR_2g105060 52.632 57 26 1 125 180 95 151 4.03e-16 76.6
MS.gene46172.t1 MTR_2g032030 41.584 101 52 2 87 180 224 324 4.45e-16 78.2
MS.gene46172.t1 MTR_2g105060 52.632 57 26 1 125 180 170 226 5.03e-16 77.4
MS.gene46172.t1 MTR_1g077780 54.237 59 27 0 122 180 60 118 6.41e-16 73.6
MS.gene46172.t1 MTR_1g099600 53.968 63 28 1 119 180 180 242 7.20e-16 77.0
MS.gene46172.t1 MTR_6g086555 35.714 126 71 3 64 180 139 263 7.33e-16 77.8
MS.gene46172.t1 MTR_2g032030 42.268 97 49 2 91 180 228 324 8.15e-16 77.8
MS.gene46172.t1 MTR_7g009730 50.000 72 34 2 110 180 206 276 8.30e-16 77.8
MS.gene46172.t1 MTR_2g088000 42.857 91 48 3 95 184 323 410 9.34e-16 77.8
MS.gene46172.t1 MTR_4g107970 50.000 72 34 2 110 180 165 235 1.22e-15 77.4
MS.gene46172.t1 MTR_1g078260 56.897 58 24 1 124 180 247 304 1.23e-15 77.4
MS.gene46172.t1 MTR_4g107970 50.000 72 34 2 110 180 242 312 1.23e-15 77.4
MS.gene46172.t1 MTR_7g079040 44.000 100 45 3 122 210 152 251 1.54e-15 76.3
MS.gene46172.t1 MTR_4g094412 48.611 72 35 2 110 180 221 291 1.73e-15 76.6
MS.gene46172.t1 MTR_4g094412 48.611 72 35 2 110 180 230 300 2.03e-15 76.6
MS.gene46172.t1 MTR_3g053330 46.053 76 39 2 110 184 238 312 2.38e-15 76.3
MS.gene46172.t1 MTR_2g016770 54.098 61 27 1 125 184 36 96 2.70e-15 73.6
MS.gene46172.t1 MTR_2g016770 54.098 61 27 1 125 184 28 88 3.44e-15 73.2
MS.gene46172.t1 MTR_4g132430 56.897 58 24 1 124 180 127 184 4.38e-15 75.1
MS.gene46172.t1 MTR_8g098945 53.226 62 28 1 120 180 125 186 5.40e-15 73.9
MS.gene46172.t1 MTR_3g031220 59.649 57 22 1 124 180 198 253 7.09e-15 74.7
MS.gene46172.t1 MTR_4g132430 56.897 58 24 1 124 180 261 318 8.01e-15 74.7
MS.gene46172.t1 MTR_4g007060 46.154 78 39 3 105 180 109 185 8.68e-15 73.6
MS.gene46172.t1 MTR_2g083870 57.895 57 23 1 125 180 81 137 9.16e-15 73.2
MS.gene46172.t1 MTR_7g110720 44.444 90 34 2 92 180 172 246 1.06e-14 74.3
MS.gene46172.t1 MTR_7g110720 44.444 90 34 2 92 180 199 273 1.10e-14 74.3
MS.gene46172.t1 MTR_2g023930 38.053 113 53 3 70 180 265 362 1.12e-14 74.3
MS.gene46172.t1 MTR_4g007060 46.154 78 39 3 105 180 143 219 1.17e-14 73.6
MS.gene46172.t1 MTR_3g090860 57.377 61 23 1 121 178 130 190 1.20e-14 73.6
MS.gene46172.t1 MTR_3g009470 53.030 66 30 1 115 180 271 335 2.73e-14 73.2
MS.gene46172.t1 MTR_5g067680 52.542 59 25 1 124 179 202 260 3.47e-14 72.4
MS.gene46172.t1 MTR_2g024380 50.000 76 32 3 122 192 249 323 4.89e-14 72.4
MS.gene46172.t1 MTR_1g013790 50.877 57 27 1 125 180 102 158 6.17e-14 70.5
MS.gene46172.t1 MTR_8g067635 52.381 63 29 1 119 180 344 406 6.44e-14 72.0
MS.gene46172.t1 MTR_2g024350 53.333 60 27 1 122 180 6 65 6.66e-14 70.1
MS.gene46172.t1 MTR_2g045360 52.632 57 26 1 125 180 212 268 3.65e-13 69.7
MS.gene46172.t1 MTR_8g067650 53.333 60 27 1 122 180 337 396 3.97e-13 69.7
MS.gene46172.t1 MTR_7g117200 46.753 77 33 3 110 178 99 175 8.63e-13 68.2
MS.gene46172.t1 MTR_8g027860 44.737 76 35 2 110 178 118 193 1.93e-12 67.0
MS.gene46172.t1 MTR_8g069935 49.153 59 29 1 123 180 330 388 2.76e-12 67.0
MS.gene46172.t1 MTR_5g074200 50.000 58 28 1 124 181 220 276 6.54e-12 65.5
MS.gene46172.t1 MTR_4g049760 50.877 57 27 1 125 180 291 347 1.11e-11 65.5
MS.gene46172.t1 MTR_2g075610 50.000 60 27 1 122 178 27 86 1.48e-11 62.8
MS.gene46172.t1 MTR_8g005750 53.448 58 24 1 124 178 103 160 1.86e-11 63.5
MS.gene46172.t1 MTR_0002s1250 51.724 58 25 1 124 178 111 168 2.57e-11 63.2
MS.gene46172.t1 MTR_2g075750 50.000 60 27 1 122 178 26 85 3.70e-11 61.2
MS.gene46172.t1 MTR_2g075700 49.231 65 30 1 122 183 142 206 4.32e-11 62.8
MS.gene46172.t1 MTR_7g073430 51.724 58 25 1 124 178 122 179 7.86e-11 62.0
MS.gene46172.t1 MTR_3g093830 52.632 57 24 1 125 178 128 184 8.23e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46172.t1 AT5G43290 41.603 262 121 10 30 275 21 266 1.03e-50 169
MS.gene46172.t1 AT1G69310 41.558 154 74 4 124 274 147 287 2.23e-28 110
MS.gene46172.t1 AT1G69310 41.558 154 74 4 124 274 147 287 2.23e-28 110
MS.gene46172.t1 AT1G69310 41.558 154 74 4 124 274 147 287 2.23e-28 110
MS.gene46172.t1 AT5G49520 32.597 181 100 3 124 285 221 398 5.26e-24 100
MS.gene46172.t1 AT1G69310 38.961 154 74 5 124 274 147 283 7.17e-23 95.9
MS.gene46172.t1 AT2G47260 66.102 59 20 0 124 182 174 232 8.99e-23 96.7
MS.gene46172.t1 AT4G39410 55.844 77 34 0 124 200 223 299 1.08e-22 95.9
MS.gene46172.t1 AT1G29860 68.421 57 18 0 124 180 136 192 2.23e-22 94.7
MS.gene46172.t1 AT4G18170 68.421 57 18 0 124 180 172 228 4.20e-22 94.4
MS.gene46172.t1 AT2G25000 33.702 181 101 7 13 180 29 203 5.42e-22 93.2
MS.gene46172.t1 AT1G64000 64.912 57 20 0 124 180 114 170 7.63e-22 91.3
MS.gene46172.t1 AT5G46350 66.667 57 19 0 124 180 183 239 2.70e-21 92.4
MS.gene46172.t1 AT1G13960 62.712 59 22 0 122 180 254 312 3.42e-21 92.4
MS.gene46172.t1 AT1G13960 62.069 58 21 1 123 180 75 131 2.72e-15 75.9
MS.gene46172.t1 AT2G03340 62.712 59 22 0 122 180 413 471 3.83e-21 93.6
MS.gene46172.t1 AT2G03340 60.345 58 22 1 123 180 249 305 7.32e-15 75.1
MS.gene46172.t1 AT2G04880 63.077 65 24 0 124 188 283 347 4.54e-21 93.2
MS.gene46172.t1 AT2G04880 67.500 40 13 0 124 163 111 150 1.17e-11 65.5
MS.gene46172.t1 AT1G13960 62.712 59 22 0 122 180 407 465 4.69e-21 93.2
MS.gene46172.t1 AT1G13960 62.069 58 21 1 123 180 228 284 2.30e-15 76.6
MS.gene46172.t1 AT2G04880 63.077 65 24 0 124 188 307 371 6.18e-21 92.8
MS.gene46172.t1 AT2G04880 67.500 40 13 0 124 163 111 150 1.03e-11 65.5
MS.gene46172.t1 AT5G41570 63.158 57 21 0 124 180 98 154 7.19e-21 88.2
MS.gene46172.t1 AT5G13080 61.404 57 22 0 124 180 67 123 1.95e-20 85.9
MS.gene46172.t1 AT2G25000 34.132 167 92 6 27 180 21 182 2.03e-20 88.6
MS.gene46172.t1 AT5G07100 63.158 57 21 0 124 180 141 197 2.88e-20 87.4
MS.gene46172.t1 AT5G07100 54.098 61 28 0 120 180 20 80 1.20e-14 72.0
MS.gene46172.t1 AT5G07100 63.158 57 21 0 124 180 141 197 2.88e-20 87.4
MS.gene46172.t1 AT5G07100 54.098 61 28 0 120 180 20 80 1.20e-14 72.0
MS.gene46172.t1 AT5G07100 63.158 57 21 0 124 180 141 197 2.88e-20 87.4
MS.gene46172.t1 AT5G07100 54.098 61 28 0 120 180 20 80 1.20e-14 72.0
MS.gene46172.t1 AT5G07100 63.158 57 21 0 124 180 141 197 2.88e-20 87.4
MS.gene46172.t1 AT5G07100 54.098 61 28 0 120 180 20 80 1.20e-14 72.0
MS.gene46172.t1 AT2G46130 53.947 76 33 2 106 180 12 86 2.98e-20 84.3
MS.gene46172.t1 AT3G62340 64.912 57 20 0 124 180 118 174 3.16e-20 88.6
MS.gene46172.t1 AT2G25000 38.060 134 67 5 60 180 30 160 3.30e-20 87.4
MS.gene46172.t1 AT2G25000 38.060 134 67 5 60 180 30 160 3.30e-20 87.4
MS.gene46172.t1 AT3G01970 59.649 57 23 0 124 180 65 121 6.15e-20 84.7
MS.gene46172.t1 AT5G07100 63.158 57 21 0 124 180 234 290 9.40e-20 87.8
MS.gene46172.t1 AT5G07100 39.450 109 48 2 120 228 113 203 2.42e-14 72.4
MS.gene46172.t1 AT5G56270 63.158 57 21 0 124 180 487 543 1.05e-19 89.7
MS.gene46172.t1 AT5G56270 57.576 66 27 1 119 184 268 332 1.88e-16 80.1
MS.gene46172.t1 AT3G01080 61.017 59 23 0 122 180 304 362 2.40e-19 87.8
MS.gene46172.t1 AT3G01080 58.621 58 23 1 123 180 166 222 1.85e-13 70.5
MS.gene46172.t1 AT3G01080 61.017 59 23 0 122 180 342 400 2.54e-19 88.2
MS.gene46172.t1 AT3G01080 59.649 57 22 1 124 180 205 260 1.71e-13 70.9
MS.gene46172.t1 AT2G44745 63.793 58 21 0 124 181 145 202 3.61e-19 84.3
MS.gene46172.t1 AT5G26170 57.895 57 24 0 124 180 113 169 4.13e-19 83.2
MS.gene46172.t1 AT4G26640 61.404 57 22 0 124 180 205 261 5.05e-19 86.7
MS.gene46172.t1 AT4G26640 59.322 59 23 1 122 180 33 90 3.82e-14 72.4
MS.gene46172.t1 AT4G26640 61.404 57 22 0 124 180 205 261 5.05e-19 86.7
MS.gene46172.t1 AT4G26640 59.322 59 23 1 122 180 33 90 3.82e-14 72.4
MS.gene46172.t1 AT4G26640 61.404 57 22 0 124 180 205 261 5.05e-19 86.7
MS.gene46172.t1 AT4G26640 59.322 59 23 1 122 180 33 90 3.82e-14 72.4
MS.gene46172.t1 AT4G26640 61.404 57 22 0 124 180 205 261 5.05e-19 86.7
MS.gene46172.t1 AT4G26640 59.322 59 23 1 122 180 33 90 3.82e-14 72.4
MS.gene46172.t1 AT4G26640 61.404 57 22 0 124 180 341 397 5.05e-19 87.4
MS.gene46172.t1 AT4G26640 59.322 59 23 1 122 180 169 226 3.24e-14 73.2
MS.gene46172.t1 AT4G26640 61.404 57 22 0 124 180 309 365 5.82e-19 87.0
MS.gene46172.t1 AT4G26640 59.322 59 23 1 122 180 137 194 3.73e-14 72.8
MS.gene46172.t1 AT4G26640 61.404 57 22 0 124 180 381 437 5.88e-19 87.4
MS.gene46172.t1 AT4G26640 59.322 59 23 1 122 180 209 266 3.45e-14 73.2
MS.gene46172.t1 AT4G31550 52.000 75 32 2 110 180 229 303 2.85e-18 84.0
MS.gene46172.t1 AT4G31550 52.000 75 32 2 110 180 228 302 2.88e-18 84.0
MS.gene46172.t1 AT2G38470 61.404 57 22 0 124 180 362 418 3.42e-18 85.1
MS.gene46172.t1 AT2G38470 62.069 58 21 1 123 180 183 239 6.47e-16 78.2
MS.gene46172.t1 AT5G64810 54.386 57 26 0 124 180 110 166 4.52e-18 80.9
MS.gene46172.t1 AT4G30935 46.835 79 41 1 103 180 309 387 6.55e-18 84.0
MS.gene46172.t1 AT4G30935 53.571 56 25 1 125 180 169 223 1.22e-11 65.1
MS.gene46172.t1 AT2G23320 48.101 79 37 2 106 180 219 297 6.98e-18 82.8
MS.gene46172.t1 AT2G30250 62.500 56 21 0 125 180 329 384 7.69e-18 83.2
MS.gene46172.t1 AT2G30250 56.140 57 24 1 124 180 166 221 1.02e-12 68.2
MS.gene46172.t1 AT4G31800 54.237 59 26 1 125 182 112 170 8.62e-18 81.3
MS.gene46172.t1 AT1G55600 54.098 61 28 0 124 184 307 367 9.48e-18 83.6
MS.gene46172.t1 AT2G21900 54.386 57 26 0 124 180 109 165 9.88e-18 80.1
MS.gene46172.t1 AT4G31800 54.237 59 26 1 125 182 177 235 1.36e-17 81.6
MS.gene46172.t1 AT2G34830 34.444 180 91 6 21 180 100 272 2.07e-17 82.4
MS.gene46172.t1 AT2G34830 34.444 180 91 6 21 180 109 281 2.21e-17 82.4
MS.gene46172.t1 AT2G37260 57.895 57 24 0 124 180 269 325 2.59e-17 81.3
MS.gene46172.t1 AT2G37260 58.929 56 22 1 125 180 86 140 3.16e-14 72.4
MS.gene46172.t1 AT2G37260 57.895 57 24 0 124 180 267 323 2.72e-17 81.3
MS.gene46172.t1 AT2G37260 58.929 56 22 1 125 180 84 138 3.15e-14 72.4
MS.gene46172.t1 AT2G37260 57.895 57 24 0 124 180 349 405 2.88e-17 82.0
MS.gene46172.t1 AT2G37260 58.929 56 22 1 125 180 166 220 2.79e-14 73.2
MS.gene46172.t1 AT2G30590 43.750 96 48 3 93 184 281 374 3.26e-17 81.3
MS.gene46172.t1 AT4G26440 56.897 58 25 0 124 181 372 429 3.45e-17 82.0
MS.gene46172.t1 AT4G26440 46.154 91 33 2 124 214 178 252 6.85e-16 78.2
MS.gene46172.t1 AT5G52830 37.500 144 67 4 122 263 163 285 5.00e-17 80.5
MS.gene46172.t1 AT5G28650 48.101 79 37 2 106 180 241 319 9.04e-17 79.7
MS.gene46172.t1 AT2G24570 50.667 75 33 2 110 180 226 300 1.05e-16 79.3
MS.gene46172.t1 AT1G68150 45.783 83 43 2 99 180 211 292 2.01e-16 79.0
MS.gene46172.t1 AT1G30650 44.643 112 52 4 78 180 164 274 2.71e-16 79.0
MS.gene46172.t1 AT3G04670 46.835 79 38 2 106 180 241 319 3.44e-16 78.2
MS.gene46172.t1 AT1G80840 54.386 57 25 1 125 180 147 203 5.67e-16 77.0
MS.gene46172.t1 AT4G24240 42.857 91 46 3 94 180 250 338 7.60e-16 77.4
MS.gene46172.t1 AT1G62300 31.613 155 104 2 28 180 215 369 7.97e-16 77.8
MS.gene46172.t1 AT4G01250 48.718 78 37 2 106 182 112 187 8.27e-16 76.6
MS.gene46172.t1 AT1G29280 57.895 57 23 1 125 180 75 131 1.08e-15 75.5
MS.gene46172.t1 AT5G15130 48.611 72 35 2 110 180 214 284 2.51e-15 76.6
MS.gene46172.t1 AT5G15130 48.611 72 35 2 110 180 172 242 2.68e-15 76.3
MS.gene46172.t1 AT5G45050 47.619 84 41 2 100 180 1126 1209 4.61e-15 76.3
MS.gene46172.t1 AT5G45050 47.619 84 41 2 100 180 1154 1237 4.76e-15 75.9
MS.gene46172.t1 AT5G45050 47.619 84 41 2 100 180 1015 1098 5.57e-15 75.9
MS.gene46172.t1 AT2G46130 48.684 76 33 3 106 180 12 82 6.37e-15 69.7
MS.gene46172.t1 AT3G58710 59.649 57 22 1 125 180 72 128 6.80e-15 73.6
MS.gene46172.t1 AT3G58710 59.649 57 22 1 125 180 71 127 6.92e-15 73.6
MS.gene46172.t1 AT2G46400 46.914 81 35 2 106 178 81 161 7.13e-15 73.9
MS.gene46172.t1 AT1G18860 46.988 83 41 3 99 180 216 296 7.81e-15 75.1
MS.gene46172.t1 AT4G23550 56.140 57 24 1 125 180 141 197 1.90e-14 72.8
MS.gene46172.t1 AT4G04450 57.895 57 23 1 125 180 199 255 2.16e-14 73.6
MS.gene46172.t1 AT2G40740 54.098 61 25 1 124 181 173 233 2.51e-14 72.4
MS.gene46172.t1 AT2G40740 54.098 61 25 1 124 181 182 242 3.18e-14 72.0
MS.gene46172.t1 AT4G04450 57.895 57 23 1 125 180 293 349 3.34e-14 73.2
MS.gene46172.t1 AT4G22070 57.895 57 23 1 125 180 298 354 4.30e-14 72.8
MS.gene46172.t1 AT4G22070 57.895 57 23 1 125 180 298 354 4.30e-14 72.8
MS.gene46172.t1 AT4G22070 57.895 57 23 1 125 180 298 354 4.30e-14 72.8
MS.gene46172.t1 AT4G22070 57.895 57 23 1 125 180 298 354 4.30e-14 72.8
MS.gene46172.t1 AT3G01080 59.649 57 22 1 124 180 205 260 8.38e-14 71.2
MS.gene46172.t1 AT4G01720 55.172 58 25 1 124 180 239 296 2.89e-13 70.1
MS.gene46172.t1 AT5G24110 53.448 58 24 1 124 178 113 170 1.45e-12 67.4
MS.gene46172.t1 AT4G11070 52.459 61 26 1 121 178 106 166 2.08e-12 66.6
MS.gene46172.t1 AT4G11070 53.448 58 24 1 124 178 141 198 2.15e-12 67.0
MS.gene46172.t1 AT1G66560 49.153 59 27 1 124 179 103 161 2.72e-12 65.9
MS.gene46172.t1 AT5G01900 42.056 107 47 5 125 216 111 217 7.65e-12 64.7
MS.gene46172.t1 AT2G40750 36.036 111 54 3 124 225 152 254 9.77e-12 65.1
MS.gene46172.t1 AT4G23810 50.820 61 27 1 121 178 155 215 1.15e-11 64.7
MS.gene46172.t1 AT1G69810 49.153 59 28 2 124 180 203 261 1.50e-11 64.7
MS.gene46172.t1 AT1G69810 49.153 59 28 2 124 180 145 203 1.94e-11 64.3
MS.gene46172.t1 AT1G66550 44.444 63 32 1 124 183 103 165 3.12e-11 62.8
MS.gene46172.t1 AT1G66550 44.444 63 32 1 124 183 108 170 3.45e-11 62.8

Find 76 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAACTTCACTTGCTTTA+TGG 0.118410 7.2:+40179005 None:intergenic
TTGTGTACGGTCCAATAAAA+TGG 0.226460 7.2:+40178919 None:intergenic
CTTCACTTGCTTTATGGTCT+TGG 0.238976 7.2:+40179011 None:intergenic
TTCATTTCAAATATTTATTC+AGG 0.246385 7.2:-40181077 MS.gene46172:CDS
TTTGAAATGAAGTTATTAAA+AGG 0.250391 7.2:+40181089 None:intergenic
TTGATGAAAATTGTTGAAAT+TGG 0.253295 7.2:+40181003 None:intergenic
TGAAGAGTTTACCTAGGATT+TGG 0.255247 7.2:+40180727 None:intergenic
TCATTTCAGAATTTCTATAT+TGG 0.279171 7.2:-40180869 MS.gene46172:intron
AGCCCAATCTAGTAATTCTT+TGG 0.285857 7.2:-40178954 MS.gene46172:CDS
AGAAAATAATGTCTTCTAAT+TGG 0.303170 7.2:-40181229 MS.gene46172:CDS
ATTGTTGAAATTGGTTACTA+TGG 0.305605 7.2:+40181012 None:intergenic
AATTACTAGATTGGGCTTCA+TGG 0.316924 7.2:+40178960 None:intergenic
GATTGTCCCACTATGAAATA+AGG 0.327297 7.2:+40179097 None:intergenic
TTCACTTGCTTTATGGTCTT+GGG 0.328292 7.2:+40179012 None:intergenic
GGATATAGGTGGAGGAAGTA+TGG 0.340368 7.2:-40180772 MS.gene46172:CDS
TTCCAAAGAATTACTAGATT+GGG 0.346671 7.2:+40178952 None:intergenic
TCACTATCAACATTGTTTGT+AGG 0.350268 7.2:+40178827 None:intergenic
GAAGAGTTTACCTAGGATTT+GGG 0.355592 7.2:+40180728 None:intergenic
AGGATTTGGGCTATTCTTGA+TGG 0.375798 7.2:+40180741 None:intergenic
ACCTTTCTCCTCCAGCATAA+TGG 0.382455 7.2:-40178775 None:intergenic
AGAAGGGTTGCTTGAAGATA+TGG 0.390745 7.2:-40178870 MS.gene46172:CDS
TGCTTATCCTTATTTCATAG+TGG 0.391267 7.2:-40179104 MS.gene46172:CDS
GTAGGCTTGGACTTCTTGAT+TGG 0.405913 7.2:+40179052 None:intergenic
GTTCCAAAGAATTACTAGAT+TGG 0.406024 7.2:+40178951 None:intergenic
GGCTTGGACTTCTTGATTGG+TGG 0.406129 7.2:+40179055 None:intergenic
GCTTCTTAGCACCACACCTT+GGG 0.406138 7.2:+40179194 None:intergenic
CTCCATCATTGTCTTTGACA+TGG 0.406707 7.2:+40181250 None:intergenic
CACTATCAACATTGTTTGTA+GGG 0.407829 7.2:+40178828 None:intergenic
TAAGTGATTATGAGAGTGTC+AGG 0.409746 7.2:+40179148 None:intergenic
GATACGGTCCAAGAAAATTT+CGG 0.416624 7.2:-40178896 MS.gene46172:CDS
ACTTTGAGAATCAAATGCTT+TGG 0.419140 7.2:-40180814 MS.gene46172:CDS
AGGAGAAAGGTGTGAGGAGA+AGG 0.422919 7.2:+40178787 None:intergenic
GGCAATGGGTTGGGTGATGA+TGG 0.433026 7.2:-40180793 MS.gene46172:CDS
AAATGAAGTTATTAAAAGGT+TGG 0.435596 7.2:+40181093 None:intergenic
GAGAGTGTCAGGGTCTTCAT+TGG 0.440141 7.2:+40179159 None:intergenic
TGAAGATATGGTGCCATTCA+TGG 0.441742 7.2:-40178858 MS.gene46172:CDS
TCCTTGTGAAGAGGTAGGCT+TGG 0.442743 7.2:+40179039 None:intergenic
GGTTGGGTGATGATGGATAT+AGG 0.450448 7.2:-40180786 MS.gene46172:CDS
CAAGAAAATTTCGGCTCAGA+AGG 0.452520 7.2:-40178887 MS.gene46172:CDS
TGAAGAATCATGACTTATGT+TGG 0.454606 7.2:+40181121 None:intergenic
AAATGCTTTGGCAATGGGTT+GGG 0.461090 7.2:-40180802 MS.gene46172:CDS
GAATCAAATGCTTTGGCAAT+GGG 0.468092 7.2:-40180807 MS.gene46172:CDS
GTAGGGTTTCTAACCATGAA+TGG 0.482456 7.2:+40178845 None:intergenic
TGTGTACGGTCCAATAAAAT+GGG 0.485883 7.2:+40178920 None:intergenic
CTTGCTTTATGGTCTTGGGT+TGG 0.490234 7.2:+40179016 None:intergenic
GCTTATCCTTATTTCATAGT+GGG 0.490566 7.2:-40179103 MS.gene46172:CDS
CTTGGACCGTATCTTGTGTA+CGG 0.501432 7.2:+40178906 None:intergenic
CTTAGCACCACACCTTGGGT+TGG 0.505309 7.2:+40179198 None:intergenic
TCAAGAATAGCCCAAATCCT+AGG 0.505398 7.2:-40180738 MS.gene46172:intron
TCCATTATGCTGGAGGAGAA+AGG 0.508409 7.2:+40178774 None:intergenic
AGAATCAAATGCTTTGGCAA+TGG 0.511349 7.2:-40180808 MS.gene46172:CDS
GAACAAACAGGAGTTACTAT+AGG 0.514245 7.2:-40179225 MS.gene46172:intron
AAACCAGAAGTCCATTATGC+TGG 0.521824 7.2:+40178764 None:intergenic
ACTCTCATAATCACTTATGA+AGG 0.527480 7.2:-40179142 MS.gene46172:CDS
CAAATGCTTTGGCAATGGGT+TGG 0.528007 7.2:-40180803 MS.gene46172:CDS
GTTGGTCCTTGTGAAGAGGT+AGG 0.529031 7.2:+40179034 None:intergenic
ATTGGACCGTACACAAGATA+CGG 0.536511 7.2:-40178912 MS.gene46172:CDS
TGCTTCTTAGCACCACACCT+TGG 0.538042 7.2:+40179193 None:intergenic
ATCCATGTCAAAGACAATGA+TGG 0.541467 7.2:-40181252 MS.gene46172:CDS
TCAGAATTTCTATATTGGAA+AGG 0.541823 7.2:-40180864 MS.gene46172:intron
TTGGGTTGGTCCTTGTGAAG+AGG 0.546121 7.2:+40179030 None:intergenic
AAGGTGTGGTGCTAAGAAGC+AGG 0.570713 7.2:-40179191 MS.gene46172:CDS
AAGGATAAGCAAAGTGCAAG+TGG 0.571322 7.2:+40179116 None:intergenic
AAGAAAATTTCGGCTCAGAA+GGG 0.589966 7.2:-40178886 MS.gene46172:CDS
TGCTGGAGGAGAAAGGTGTG+AGG 0.602724 7.2:+40178781 None:intergenic
AAAGCAAGTGAAGTTCATGA+AGG 0.612429 7.2:-40179001 MS.gene46172:CDS
TCATGTGGCAACATAAGAAG+AGG 0.619719 7.2:+40181161 None:intergenic
TCCAAGCCTACCTCTTCACA+AGG 0.631287 7.2:-40179040 MS.gene46172:CDS
AATGTCTTCTAATTGGTCAG+AGG 0.638714 7.2:-40181222 MS.gene46172:CDS
AGGTGCACCAACCCAAGGTG+TGG 0.643144 7.2:-40179205 MS.gene46172:CDS
ACTATAGGTGCACCAACCCA+AGG 0.643448 7.2:-40179210 MS.gene46172:CDS
CCAGAAGTCCATTATGCTGG+AGG 0.643601 7.2:+40178767 None:intergenic
GTGATGATGGATATAGGTGG+AGG 0.658043 7.2:-40180780 MS.gene46172:CDS
TGGGTGATGATGGATATAGG+TGG 0.667370 7.2:-40180783 MS.gene46172:CDS
ACTTCAGATACTCTCTCATG+TGG 0.678108 7.2:+40181146 None:intergenic
AAGTGATTATGAGAGTGTCA+GGG 0.690845 7.2:+40179149 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAATGAAATACTATTTAA+AGG + chr7.2:40180092-40180111 None:intergenic 15.0%
!! TTCATTTCAAATATTTATTC+AGG - chr7.2:40178964-40178983 MS.gene46172:CDS 15.0%
!!! TTTGAAATGAAGTTATTAAA+AGG + chr7.2:40178955-40178974 None:intergenic 15.0%
!!! TTTTTAAATCAATCATACAA+TGG + chr7.2:40180648-40180667 None:intergenic 15.0%
!! AAATGAAGTTATTAAAAGGT+TGG + chr7.2:40178951-40178970 None:intergenic 20.0%
!! AAGGAAATATCTAAAAATGA+AGG + chr7.2:40179367-40179386 None:intergenic 20.0%
!! AATCTTCTCAAATTAGTTAA+GGG + chr7.2:40180746-40180765 None:intergenic 20.0%
!! AGAAAATAATGTCTTCTAAT+TGG - chr7.2:40178812-40178831 MS.gene46172:CDS 20.0%
!! ATTTATCAATATAACCTCAT+CGG + chr7.2:40180421-40180440 None:intergenic 20.0%
!! CAACAAATTCAAATTCATTT+AGG + chr7.2:40179608-40179627 None:intergenic 20.0%
!! CACATTAGAATTGTTAATTA+TGG + chr7.2:40180542-40180561 None:intergenic 20.0%
!! GATGAAAAATAAACATTTAG+AGG - chr7.2:40179660-40179679 MS.gene46172:intron 20.0%
!! TAATCTTCTCAAATTAGTTA+AGG + chr7.2:40180747-40180766 None:intergenic 20.0%
!! TCATTTCAGAATTTCTATAT+TGG - chr7.2:40179172-40179191 MS.gene46172:CDS 20.0%
!! TTGATGAAAATTGTTGAAAT+TGG + chr7.2:40179041-40179060 None:intergenic 20.0%
!!! AACATCACATAAGTTTTATA+AGG + chr7.2:40179830-40179849 None:intergenic 20.0%
!!! AATATTTTGAATGTATGCAT+TGG + chr7.2:40179980-40179999 None:intergenic 20.0%
!!! ATTACAAATTTTTTATGCCA+TGG - chr7.2:40180794-40180813 MS.gene46172:CDS 20.0%
!!! TAAAGAGAGTTTTAATTCTA+AGG - chr7.2:40180038-40180057 MS.gene46172:intron 20.0%
!!! TATAAATTTTGAAACTTGCA+AGG + chr7.2:40180267-40180286 None:intergenic 20.0%
!!! TTTTCGCATTTTTTAGAAAT+TGG + chr7.2:40180311-40180330 None:intergenic 20.0%
! ATTACACACATCAAATAAGT+TGG + chr7.2:40179138-40179157 None:intergenic 25.0%
! ATTGTTGAAATTGGTTACTA+TGG + chr7.2:40179032-40179051 None:intergenic 25.0%
! GATGCATATATATAGTACTT+TGG - chr7.2:40179401-40179420 MS.gene46172:intron 25.0%
! GCAAGTTTCAAAATTTATAG+TGG - chr7.2:40180268-40180287 MS.gene46172:intron 25.0%
! TACTATATATATGCATCAAC+AGG + chr7.2:40179398-40179417 None:intergenic 25.0%
! TCAGAATTTCTATATTGGAA+AGG - chr7.2:40179177-40179196 MS.gene46172:CDS 25.0%
! TGGAAAAATTTACTACTTGT+GGG + chr7.2:40179960-40179979 None:intergenic 25.0%
! TTACTCATTAATCCTATAGT+CGG + chr7.2:40180121-40180140 None:intergenic 25.0%
! TTCCAAAGAATTACTAGATT+GGG + chr7.2:40181092-40181111 None:intergenic 25.0%
! TTGGAAAAATTTACTACTTG+TGG + chr7.2:40179961-40179980 None:intergenic 25.0%
!! AAATGCAACTATAAAAGTGT+GGG + chr7.2:40180146-40180165 None:intergenic 25.0%
!! ACTTGCATGGTAATTTTATT+AGG - chr7.2:40179093-40179112 MS.gene46172:CDS 25.0%
!! CATCAATAATGCATCATTTT+TGG + chr7.2:40179644-40179663 None:intergenic 25.0%
!! CTTTTACATGTAATGTAATG+AGG - chr7.2:40179341-40179360 MS.gene46172:intron 25.0%
!! TTAAAAGTAAGAGTGCAAAA+TGG - chr7.2:40180605-40180624 MS.gene46172:intron 25.0%
!! TTCAACAATTTTCATCAACA+AGG - chr7.2:40179043-40179062 MS.gene46172:CDS 25.0%
!!! ACATTTTGGTATGATCAAAT+AGG + chr7.2:40179699-40179718 None:intergenic 25.0%
!!! CATTTTTTTGTTAACTTGCA+TGG - chr7.2:40179080-40179099 MS.gene46172:CDS 25.0%
!!! TATTTAAAGGATTAGTTGAG+TGG + chr7.2:40180079-40180098 None:intergenic 25.0%
!!! TGAATTTGAATTTGTTGTAG+TGG - chr7.2:40179611-40179630 MS.gene46172:intron 25.0%
!!! TTTTGCACTCTTACTTTTAA+AGG + chr7.2:40180605-40180624 None:intergenic 25.0%
ACAAAACCTATTACTAGCAT+TGG + chr7.2:40180576-40180595 None:intergenic 30.0%
ACAATTCTAATGTGTACCTA+AGG - chr7.2:40180548-40180567 MS.gene46172:intron 30.0%
ACTCTCATAATCACTTATGA+AGG - chr7.2:40180899-40180918 MS.gene46172:intron 30.0%
ATAAGCCGTTATATTGAGAT+CGG - chr7.2:40179923-40179942 MS.gene46172:intron 30.0%
ATATGCAACTGTACTTTAGT+CGG + chr7.2:40180197-40180216 None:intergenic 30.0%
ATTATCTTCAAACCGACTAT+AGG - chr7.2:40180106-40180125 MS.gene46172:intron 30.0%
CAAAACCTATTACTAGCATT+GGG + chr7.2:40180575-40180594 None:intergenic 30.0%
CAATCCGTGGTTAAATAAAT+CGG - chr7.2:40180385-40180404 MS.gene46172:intron 30.0%
CACTATCAACATTGTTTGTA+GGG + chr7.2:40181216-40181235 None:intergenic 30.0%
GAAATGCAACTATAAAAGTG+TGG + chr7.2:40180147-40180166 None:intergenic 30.0%
GTTCCAAAGAATTACTAGAT+TGG + chr7.2:40181093-40181112 None:intergenic 30.0%
TATATATGCATCAACAGGAT+TGG + chr7.2:40179393-40179412 None:intergenic 30.0%
TCACTATCAACATTGTTTGT+AGG + chr7.2:40181217-40181236 None:intergenic 30.0%
TGAAGAATCATGACTTATGT+TGG + chr7.2:40178923-40178942 None:intergenic 30.0%
TTAGGTATAGTTGCATGAAT+TGG - chr7.2:40179111-40179130 MS.gene46172:CDS 30.0%
TTCAAAAAATGCTGCATGAA+AGG - chr7.2:40180483-40180502 MS.gene46172:intron 30.0%
! AATGCAACTATAAAAGTGTG+GGG + chr7.2:40180145-40180164 None:intergenic 30.0%
! ACTCATTTCACCCATTTTAT+TGG - chr7.2:40181111-40181130 MS.gene46172:CDS 30.0%
! ACTTTGAGAATCAAATGCTT+TGG - chr7.2:40179227-40179246 MS.gene46172:intron 30.0%
! AGCATTTTCAATATCTGAGA+TGG + chr7.2:40178995-40179014 None:intergenic 30.0%
! GCTTATCCTTATTTCATAGT+GGG - chr7.2:40180938-40180957 MS.gene46172:intron 30.0%
! TGCTTATCCTTATTTCATAG+TGG - chr7.2:40180937-40180956 MS.gene46172:intron 30.0%
! TTAGAAATTGGTTTCATGCT+TGG + chr7.2:40180299-40180318 None:intergenic 30.0%
!! ACTACCGATTTATTTAACCA+CGG + chr7.2:40180392-40180411 None:intergenic 30.0%
!! GAATTTGTTGTAGTGGTAAA+AGG - chr7.2:40179618-40179637 MS.gene46172:intron 30.0%
!! TAAATCAGCTTTGTTTGAGA+AGG + chr7.2:40179443-40179462 None:intergenic 30.0%
!! TTTTCAATATCTGAGATGGT+AGG + chr7.2:40178991-40179010 None:intergenic 30.0%
!!! TCAAACGACTAACACTTTTT+TGG - chr7.2:40179866-40179885 MS.gene46172:intron 30.0%
AAAGCAAGTGAAGTTCATGA+AGG - chr7.2:40181040-40181059 MS.gene46172:CDS 35.0%
AAGAAAATTTCGGCTCAGAA+GGG - chr7.2:40181155-40181174 MS.gene46172:CDS 35.0%
AATGTCTTCTAATTGGTCAG+AGG - chr7.2:40178819-40178838 MS.gene46172:CDS 35.0%
AATTACTAGATTGGGCTTCA+TGG + chr7.2:40181084-40181103 None:intergenic 35.0%
AGAAAGTGAAGAGTTTACCT+AGG + chr7.2:40179323-40179342 None:intergenic 35.0%
AGAATCAAATGCTTTGGCAA+TGG - chr7.2:40179233-40179252 MS.gene46172:intron 35.0%
AGCCCAATCTAGTAATTCTT+TGG - chr7.2:40181087-40181106 MS.gene46172:CDS 35.0%
ATCCATGTCAAAGACAATGA+TGG - chr7.2:40178789-40178808 MS.gene46172:CDS 35.0%
CAATACACGTGCAAGTATTT+AGG + chr7.2:40180004-40180023 None:intergenic 35.0%
CATACCAAAATGTAAGTCAC+TGG - chr7.2:40179706-40179725 MS.gene46172:intron 35.0%
CATGAACTTCACTTGCTTTA+TGG + chr7.2:40181039-40181058 None:intergenic 35.0%
GAACAAACAGGAGTTACTAT+AGG - chr7.2:40180816-40180835 MS.gene46172:CDS 35.0%
GAAGAGTTTACCTAGGATTT+GGG + chr7.2:40179316-40179335 None:intergenic 35.0%
GAATCAAATGCTTTGGCAAT+GGG - chr7.2:40179234-40179253 MS.gene46172:intron 35.0%
GATACGGTCCAAGAAAATTT+CGG - chr7.2:40181145-40181164 MS.gene46172:CDS 35.0%
GATTGTCCCACTATGAAATA+AGG + chr7.2:40180947-40180966 None:intergenic 35.0%
GTTGTCCGATCTCAATATAA+CGG + chr7.2:40179931-40179950 None:intergenic 35.0%
TGAAGAGTTTACCTAGGATT+TGG + chr7.2:40179317-40179336 None:intergenic 35.0%
TGTGTACGGTCCAATAAAAT+GGG + chr7.2:40181124-40181143 None:intergenic 35.0%
TTCACTTGCTTTATGGTCTT+GGG + chr7.2:40181032-40181051 None:intergenic 35.0%
TTGTGTACGGTCCAATAAAA+TGG + chr7.2:40181125-40181144 None:intergenic 35.0%
! TCATCCAGTGACTTACATTT+TGG + chr7.2:40179713-40179732 None:intergenic 35.0%
! TGCTGATTACACTTCAAACA+AGG - chr7.2:40180332-40180351 MS.gene46172:intron 35.0%
! TTTTATGCCATGGAACAAAC+AGG - chr7.2:40180804-40180823 MS.gene46172:CDS 35.0%
!! AAGTGATTATGAGAGTGTCA+GGG + chr7.2:40180895-40180914 None:intergenic 35.0%
!! ACTGTACTTTAGTCGGTTTT+AGG + chr7.2:40180190-40180209 None:intergenic 35.0%
!! TAAGTGATTATGAGAGTGTC+AGG + chr7.2:40180896-40180915 None:intergenic 35.0%
AAGACGTAAATGTCAATCCG+TGG - chr7.2:40180372-40180391 MS.gene46172:intron 40.0%
AAGGACCCAATGCTAGTAAT+AGG - chr7.2:40180567-40180586 MS.gene46172:intron 40.0%
AAGGATAAGCAAAGTGCAAG+TGG + chr7.2:40180928-40180947 None:intergenic 40.0%
ACCTTGCCAAGTGAATCAAT+TGG - chr7.2:40180510-40180529 MS.gene46172:intron 40.0%
ACTCAAATTGCACGACTAGT+AGG - chr7.2:40179742-40179761 MS.gene46172:intron 40.0%
ACTTCAGATACTCTCTCATG+TGG + chr7.2:40178898-40178917 None:intergenic 40.0%
AGAAGGGTTGCTTGAAGATA+TGG - chr7.2:40181171-40181190 MS.gene46172:CDS 40.0%
AGGATTTGGGCTATTCTTGA+TGG + chr7.2:40179303-40179322 None:intergenic 40.0%
AGTAACTCCTGTTTGTTCCA+TGG + chr7.2:40180814-40180833 None:intergenic 40.0%
ATTGGACCGTACACAAGATA+CGG - chr7.2:40181129-40181148 MS.gene46172:CDS 40.0%
CAAGAAAATTTCGGCTCAGA+AGG - chr7.2:40181154-40181173 MS.gene46172:CDS 40.0%
CCAAGTGAATCAATTGGGTT+GGG - chr7.2:40180516-40180535 MS.gene46172:intron 40.0%
CCTTGCCAAGTGAATCAATT+GGG - chr7.2:40180511-40180530 MS.gene46172:intron 40.0%
CTCCATCATTGTCTTTGACA+TGG + chr7.2:40178794-40178813 None:intergenic 40.0%
CTTCACTTGCTTTATGGTCT+TGG + chr7.2:40181033-40181052 None:intergenic 40.0%
GTAGGGTTTCTAACCATGAA+TGG + chr7.2:40181199-40181218 None:intergenic 40.0%
TCAAGAATAGCCCAAATCCT+AGG - chr7.2:40179303-40179322 MS.gene46172:intron 40.0%
TCATGTGGCAACATAAGAAG+AGG + chr7.2:40178883-40178902 None:intergenic 40.0%
! AAATGCTTTGGCAATGGGTT+GGG - chr7.2:40179239-40179258 MS.gene46172:intron 40.0%
! AATTGATTCACTTGGCAAGG+TGG + chr7.2:40180511-40180530 None:intergenic 40.0%
! ATTACTAGCATTGGGTCCTT+AGG + chr7.2:40180567-40180586 None:intergenic 40.0%
! ATTGATTCACTTGGCAAGGT+GGG + chr7.2:40180510-40180529 None:intergenic 40.0%
! ATTGCACGACTAGTAGGTTT+TGG - chr7.2:40179748-40179767 MS.gene46172:intron 40.0%
! CTTCTGAGCCGAAATTTTCT+TGG + chr7.2:40181156-40181175 None:intergenic 40.0%
! GCACTTGTAAGTATCGTGTA+CGG + chr7.2:40179794-40179813 None:intergenic 40.0%
!! AGGATTAGTTGAGTGGATCA+TGG + chr7.2:40180072-40180091 None:intergenic 40.0%
!! TGAAGATATGGTGCCATTCA+TGG - chr7.2:40181183-40181202 MS.gene46172:CDS 40.0%
CAAATGCTTTGGCAATGGGT+TGG - chr7.2:40179238-40179257 MS.gene46172:intron 45.0%
CTTGGACCGTATCTTGTGTA+CGG + chr7.2:40181138-40181157 None:intergenic 45.0%
GCCAAGTGAATCAATTGGGT+TGG - chr7.2:40180515-40180534 MS.gene46172:intron 45.0%
GGATATAGGTGGAGGAAGTA+TGG - chr7.2:40179269-40179288 MS.gene46172:intron 45.0%
GTAGGCTTGGACTTCTTGAT+TGG + chr7.2:40180992-40181011 None:intergenic 45.0%
TTCACACTTCACTCGATGCT+AGG + chr7.2:40180455-40180474 None:intergenic 45.0%
TTGATTCACTTGGCAAGGTG+GGG + chr7.2:40180509-40180528 None:intergenic 45.0%
! CCCAACCCAATTGATTCACT+TGG + chr7.2:40180519-40180538 None:intergenic 45.0%
! CCCAATTGATTCACTTGGCA+AGG + chr7.2:40180514-40180533 None:intergenic 45.0%
! CTTGCTTTATGGTCTTGGGT+TGG + chr7.2:40181028-40181047 None:intergenic 45.0%
! GCATCAACAGGATTGGTGTA+AGG + chr7.2:40179386-40179405 None:intergenic 45.0%
!! GGTTGGGTGATGATGGATAT+AGG - chr7.2:40179255-40179274 MS.gene46172:intron 45.0%
!! GTGATGATGGATATAGGTGG+AGG - chr7.2:40179261-40179280 MS.gene46172:intron 45.0%
!! TGGGTGATGATGGATATAGG+TGG - chr7.2:40179258-40179277 MS.gene46172:intron 45.0%
ACTATAGGTGCACCAACCCA+AGG - chr7.2:40180831-40180850 MS.gene46172:CDS 50.0%
GCTTCTTAGCACCACACCTT+GGG + chr7.2:40180850-40180869 None:intergenic 50.0%
GGCTTGGACTTCTTGATTGG+TGG + chr7.2:40180989-40181008 None:intergenic 50.0%
GTTGGTCCTTGTGAAGAGGT+AGG + chr7.2:40181010-40181029 None:intergenic 50.0%
TCCAAGCCTACCTCTTCACA+AGG - chr7.2:40181001-40181020 MS.gene46172:CDS 50.0%
TCCTTGTGAAGAGGTAGGCT+TGG + chr7.2:40181005-40181024 None:intergenic 50.0%
TCGGTAGTTAACTGCCGATG+AGG - chr7.2:40180404-40180423 MS.gene46172:intron 50.0%
TGCTTCTTAGCACCACACCT+TGG + chr7.2:40180851-40180870 None:intergenic 50.0%
! AAGGTGTGGTGCTAAGAAGC+AGG - chr7.2:40180850-40180869 MS.gene46172:CDS 50.0%
! AGGAGAAAGGTGTGAGGAGA+AGG + chr7.2:40181257-40181276 None:intergenic 50.0%
!! GAGAGTGTCAGGGTCTTCAT+TGG + chr7.2:40180885-40180904 None:intergenic 50.0%
!! TTGGGTTGGTCCTTGTGAAG+AGG + chr7.2:40181014-40181033 None:intergenic 50.0%
CTTAGCACCACACCTTGGGT+TGG + chr7.2:40180846-40180865 None:intergenic 55.0%
! TGCTGGAGGAGAAAGGTGTG+AGG + chr7.2:40181263-40181282 None:intergenic 55.0%
!! GGCAATGGGTTGGGTGATGA+TGG - chr7.2:40179248-40179267 MS.gene46172:intron 55.0%
AGGTGCACCAACCCAAGGTG+TGG - chr7.2:40180836-40180855 MS.gene46172:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 40178778 40181285 40178778 ID=MS.gene46172
chr7.2 mRNA 40178778 40181285 40178778 ID=MS.gene46172.t1;Parent=MS.gene46172
chr7.2 exon 40180999 40181285 40180999 ID=MS.gene46172.t1.exon1;Parent=MS.gene46172.t1
chr7.2 CDS 40180999 40181285 40180999 ID=cds.MS.gene46172.t1;Parent=MS.gene46172.t1
chr7.2 exon 40180739 40180882 40180739 ID=MS.gene46172.t1.exon2;Parent=MS.gene46172.t1
chr7.2 CDS 40180739 40180882 40180739 ID=cds.MS.gene46172.t1;Parent=MS.gene46172.t1
chr7.2 exon 40178778 40179237 40178778 ID=MS.gene46172.t1.exon3;Parent=MS.gene46172.t1
chr7.2 CDS 40178778 40179237 40178778 ID=cds.MS.gene46172.t1;Parent=MS.gene46172.t1
Gene Sequence

>MS.gene46172

ATGATTGACTCATCCATGTCAAAGACAATGATGGAGAAAATAATGTCTTCTAATTGGTCAGAGGATGATGAACTTTTAAGAGAGCTTTTAGTTGATGAGTCTCCTCTTCTTATGTTGCCACATGAGAGAGTATCTGAAGTAACCAACATAAGTCATGATTCTTCAAAAGACCAACCTTTTAATAACTTCATTTCAAATATTTATTCAGGTCCTACCATCTCAGATATTGAAAATGCTTTGTTAGTTACTAACCATAGTAACCAATTTCAACAATTTTCATCAACAAGGTAAGAACACTTCAACATTTTTTTGTTAACTTGCATGGTAATTTTATTAGGTATAGTTGCATGAATTGGACCAACTTATTTGATGTGTGTAATTGTGTTTCATATTTTCATTTCAGAATTTCTATATTGGAAAGGAGTTTGAGTAAGATTGAGAATAAGTATACTTTGAGAATCAAATGCTTTGGCAATGGGTTGGGTGATGATGGATATAGGTGGAGGAAGTATGGTCAGAAATCCATCAAGAATAGCCCAAATCCTAGGTAAACTCTTCACTTTCTTTTACATGTAATGTAATGAGGCCTTCATTTTTAGATATTTCCTTACACCAATCCTGTTGATGCATATATATAGTACTTTGGCAATAGTTTTAAAAATCCTTCTCAAACAAAGCTGATTTAGTTCAATAAAATCATACAACTTCAATAGATTAATGAAATACATACAACTATTTACTCACATATAAAATTGATAGTGTCTAGAAAATTTAGAGTAAAACTTAATCAAGTTGTAGACATGTCACAAGTTATATTTATAAAATTTCCTAAATGAATTTGAATTTGTTGTAGTGGTAAAAGGCCAAAAATGATGCATTATTGATGAAAAATAAACATTTAGAGGTTGAATTTTGAGTCCTATTTGATCATACCAAAATGTAAGTCACTGGATGAGATCAAACAACTCAAATTGCACGACTAGTAGGTTTTGGCTACTAAAGATAATTCACGTCCGTACACGATACTTACAAGTGCTCGAAACATAAATCCTTATAAAACTTATGTGATGTTACTTGTTTGATCTCAATCAAACGACTAACACTTTTTTGGTTAAATTTTCAATTTCATCTTGTTATCTTAAAATATAAGCCGTTATATTGAGATCGGACAACTCAAATCCCACAAGTAGTAAATTTTTCCAATGCATACATTCAAAATATTTCCTAAATACTTGCACGTGTATTGTAAGTAAGATTGTCTAAAGAGAGTTTTAATTCTAAGGCTTCTTTACCATGATCCACTCAACTAATCCTTTAAATAGTATTTCATTATCTTCAAACCGACTATAGGATTAATGAGTAAGCCCCACACTTTTATAGTTGCATTTCAATTGAAAAAACTTCATTTACCTAAAACCGACTAAAGTACAGTTGCATATCAAATTCAATTACTTAAAATATTCAACTTTTTTTTTTTGTTTCAAAACCTTGCAAGTTTCAAAATTTATAGTGGCAAAACCAAGCATGAAACCAATTTCTAAAAAATGCGAAAATTGCTGATTACACTTCAAACAAGGTTAAAACACATCAGAAAAAGACGTAAATGTCAATCCGTGGTTAAATAAATCGGTAGTTAACTGCCGATGAGGTTATATTGATAAATTACTAGTGTTTCCTAGCATCGAGTGAAGTGTGAACAACATTCTTCAAAAAATGCTGCATGAAAGGCCCCACCTTGCCAAGTGAATCAATTGGGTTGGGCCATAATTAACAATTCTAATGTGTACCTAAGGACCCAATGCTAGTAATAGGTTTTGTATATATCCTTTAAAAGTAAGAGTGCAAAATGGTAATAAAAATTTATCTACCATTGTATGATTGATTTAAAAATAATCGCTATTTACATTTTCTGATTGTTTTAACTCTTTAATATACAAAAAATATGAAAACAATGATTTAAAGATGCCCTTAACTAATTTGAGAAGATTAATTTCACAATACAAAATTTAATTTTTCATTACAAATTTTTTATGCCATGGAACAAACAGGAGTTACTATAGGTGCACCAACCCAAGGTGTGGTGCTAAGAAGCAGGTTGAGAGATCCAATGAAGACCCTGACACTCTCATAATCACTTATGAAGGACTCCACTTGCACTTTGCTTATCCTTATTTCATAGTGGGACAATCACATCAATCTCATTCTCATCCACCAATCAAGAAGTCCAAGCCTACCTCTTCACAAGGACCAACCCAAGACCATAAAGCAAGTGAAGTTCATGAAGGTCAGAATATACAAGAAGTCCATGAAGCCCAATCTAGTAATTCTTTGGAACTCATTTCACCCATTTTATTGGACCGTACACAAGATACGGTCCAAGAAAATTTCGGCTCAGAAGGGTTGCTTGAAGATATGGTGCCATTCATGGTTAGAAACCCTACAAACAATGTTGATAGTGATGATTACTCAAAATTTTCCTTCTCCTCACACCTTTCTCCTCCAGCATAA
Protein sequence

>MS.gene46172.t1

MIDSSMSKTMMEKIMSSNWSEDDELLRELLVDESPLLMLPHERVSEVTNISHDSSKDQPFNNFISNIYSGPTISDIENALLVTNHSNQFQQFSSTRISILERSLSKIENKYTLRIKCFGNGLGDDGYRWRKYGQKSIKNSPNPRSYYRCTNPRCGAKKQVERSNEDPDTLIITYEGLHLHFAYPYFIVGQSHQSHSHPPIKKSKPTSSQGPTQDHKASEVHEGQNIQEVHEAQSSNSLELISPILLDRTQDTVQENFGSEGLLEDMVPFMVRNPTNNVDSDDYSKFSFSSHLSPPA