AlfalfaGEDB | MS.gene46172

M. sativa cultivar XinJiangDaYe / MS.gene46172

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46172.t1	XP_013448880.1	91.6	296	25	0	1	296	1	296	3.00E-150	541.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46172.t1	Q9FHR7	40.8	262	125	10	31	277	22	268	1.6e-38	161.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46172.t1	A0A072TZR7	91.6	296	25	0	1	296	1	296	2.2e-150	541.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene46172.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46172.t1	MTR_7g062220	93.581	296	19	0	1	296	1	296	0.0	581
MS.gene46172.t1	MTR_5g043880	41.509	159	74	5	124	273	124	272	6.47e-26	103
MS.gene46172.t1	MTR_4g094588	71.930	57	16	0	124	180	178	234	2.83e-23	97.8
MS.gene46172.t1	MTR_2g033820	52.941	85	29	1	124	197	203	287	8.97e-23	97.1
MS.gene46172.t1	MTR_1g086790	66.667	57	19	0	124	180	158	214	3.87e-22	94.7
MS.gene46172.t1	MTR_7g109800	38.217	157	72	5	124	268	145	288	6.46e-22	93.6
MS.gene46172.t1	MTR_1g015140	64.912	57	20	0	124	180	102	158	9.73e-22	89.7
MS.gene46172.t1	MTR_5g091390	66.667	57	19	0	124	180	157	213	2.32e-21	92.0
MS.gene46172.t1	MTR_8g092140	64.912	57	20	0	124	180	160	216	3.53e-21	90.1
MS.gene46172.t1	MTR_3g104750	63.158	57	21	0	124	180	104	160	3.94e-21	88.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46172.t1	AT5G43290	41.603	262	121	10	30	275	21	266	1.03e-50	169
MS.gene46172.t1	AT1G69310	41.558	154	74	4	124	274	147	287	2.23e-28	110
MS.gene46172.t1	AT1G69310	41.558	154	74	4	124	274	147	287	2.23e-28	110
MS.gene46172.t1	AT1G69310	41.558	154	74	4	124	274	147	287	2.23e-28	110
MS.gene46172.t1	AT5G49520	32.597	181	100	3	124	285	221	398	5.26e-24	100
MS.gene46172.t1	AT1G69310	38.961	154	74	5	124	274	147	283	7.17e-23	95.9
MS.gene46172.t1	AT2G47260	66.102	59	20	0	124	182	174	232	8.99e-23	96.7
MS.gene46172.t1	AT4G39410	55.844	77	34	0	124	200	223	299	1.08e-22	95.9
MS.gene46172.t1	AT1G29860	68.421	57	18	0	124	180	136	192	2.23e-22	94.7
MS.gene46172.t1	AT4G18170	68.421	57	18	0	124	180	172	228	4.20e-22	94.4

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Find 76 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGAAGTCCATTATGC+TGG	0.521824	7.2:+40178764	None:intergenic
AAAGCAAGTGAAGTTCATGA+AGG	0.612429	7.2:-40179001	MS.gene46172:CDS
AAATGAAGTTATTAAAAGGT+TGG	0.435596	7.2:+40181093	None:intergenic
AAATGCTTTGGCAATGGGTT+GGG	0.461090	7.2:-40180802	MS.gene46172:CDS
AAGAAAATTTCGGCTCAGAA+GGG	0.589966	7.2:-40178886	MS.gene46172:CDS
AAGGATAAGCAAAGTGCAAG+TGG	0.571322	7.2:+40179116	None:intergenic
AAGGTGTGGTGCTAAGAAGC+AGG	0.570713	7.2:-40179191	MS.gene46172:CDS
AAGTGATTATGAGAGTGTCA+GGG	0.690845	7.2:+40179149	None:intergenic
AATGTCTTCTAATTGGTCAG+AGG	0.638714	7.2:-40181222	MS.gene46172:CDS
AATTACTAGATTGGGCTTCA+TGG	0.316924	7.2:+40178960	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAAACCTATTACTAGCAT+TGG	+	chr7.2:40180576-40180595	None:intergenic	30.0%
ACAATTCTAATGTGTACCTA+AGG	-	chr7.2:40180548-40180567	MS.gene46172:intron	30.0%
ACTCTCATAATCACTTATGA+AGG	-	chr7.2:40180899-40180918	MS.gene46172:intron	30.0%
ATAAGCCGTTATATTGAGAT+CGG	-	chr7.2:40179923-40179942	MS.gene46172:intron	30.0%
ATATGCAACTGTACTTTAGT+CGG	+	chr7.2:40180197-40180216	None:intergenic	30.0%
ATTATCTTCAAACCGACTAT+AGG	-	chr7.2:40180106-40180125	MS.gene46172:intron	30.0%
CAAAACCTATTACTAGCATT+GGG	+	chr7.2:40180575-40180594	None:intergenic	30.0%
CAATCCGTGGTTAAATAAAT+CGG	-	chr7.2:40180385-40180404	MS.gene46172:intron	30.0%
CACTATCAACATTGTTTGTA+GGG	+	chr7.2:40181216-40181235	None:intergenic	30.0%
GAAATGCAACTATAAAAGTG+TGG	+	chr7.2:40180147-40180166	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	40178778	40181285	40178778	ID=MS.gene46172
chr7.2	mRNA	40178778	40181285	40178778	ID=MS.gene46172.t1;Parent=MS.gene46172
chr7.2	exon	40180999	40181285	40180999	ID=MS.gene46172.t1.exon1;Parent=MS.gene46172.t1
chr7.2	CDS	40180999	40181285	40180999	ID=cds.MS.gene46172.t1;Parent=MS.gene46172.t1
chr7.2	exon	40180739	40180882	40180739	ID=MS.gene46172.t1.exon2;Parent=MS.gene46172.t1
chr7.2	CDS	40180739	40180882	40180739	ID=cds.MS.gene46172.t1;Parent=MS.gene46172.t1
chr7.2	exon	40178778	40179237	40178778	ID=MS.gene46172.t1.exon3;Parent=MS.gene46172.t1
chr7.2	CDS	40178778	40179237	40178778	ID=cds.MS.gene46172.t1;Parent=MS.gene46172.t1

Gene Sequence

>MS.gene46172

ATGATTGACTCATCCATGTCAAAGACAATGATGGAGAAAATAATGTCTTCTAATTGGTCAGAGGATGATGAACTTTTAAGAGAGCTTTTAGTTGATGAGTCTCCTCTTCTTATGTTGCCACATGAGAGAGTATCTGAAGTAACCAACATAAGTCATGATTCTTCAAAAGACCAACCTTTTAATAACTTCATTTCAAATATTTATTCAGGTCCTACCATCTCAGATATTGAAAATGCTTTGTTAGTTACTAACCATAGTAACCAATTTCAACAATTTTCATCAACAAGGTAAGAACACTTCAACATTTTTTTGTTAACTTGCATGGTAATTTTATTAGGTATAGTTGCATGAATTGGACCAACTTATTTGATGTGTGTAATTGTGTTTCATATTTTCATTTCAGAATTTCTATATTGGAAAGGAGTTTGAGTAAGATTGAGAATAAGTATACTTTGAGAATCAAATGCTTTGGCAATGGGTTGGGTGATGATGGATATAGGTGGAGGAAGTATGGTCAGAAATCCATCAAGAATAGCCCAAATCCTAGGTAAACTCTTCACTTTCTTTTACATGTAATGTAATGAGGCCTTCATTTTTAGATATTTCCTTACACCAATCCTGTTGATGCATATATATAGTACTTTGGCAATAGTTTTAAAAATCCTTCTCAAACAAAGCTGATTTAGTTCAATAAAATCATACAACTTCAATAGATTAATGAAATACATACAACTATTTACTCACATATAAAATTGATAGTGTCTAGAAAATTTAGAGTAAAACTTAATCAAGTTGTAGACATGTCACAAGTTATATTTATAAAATTTCCTAAATGAATTTGAATTTGTTGTAGTGGTAAAAGGCCAAAAATGATGCATTATTGATGAAAAATAAACATTTAGAGGTTGAATTTTGAGTCCTATTTGATCATACCAAAATGTAAGTCACTGGATGAGATCAAACAACTCAAATTGCACGACTAGTAGGTTTTGGCTACTAAAGATAATTCACGTCCGTACACGATACTTACAAGTGCTCGAAACATAAATCCTTATAAAACTTATGTGATGTTACTTGTTTGATCTCAATCAAACGACTAACACTTTTTTGGTTAAATTTTCAATTTCATCTTGTTATCTTAAAATATAAGCCGTTATATTGAGATCGGACAACTCAAATCCCACAAGTAGTAAATTTTTCCAATGCATACATTCAAAATATTTCCTAAATACTTGCACGTGTATTGTAAGTAAGATTGTCTAAAGAGAGTTTTAATTCTAAGGCTTCTTTACCATGATCCACTCAACTAATCCTTTAAATAGTATTTCATTATCTTCAAACCGACTATAGGATTAATGAGTAAGCCCCACACTTTTATAGTTGCATTTCAATTGAAAAAACTTCATTTACCTAAAACCGACTAAAGTACAGTTGCATATCAAATTCAATTACTTAAAATATTCAACTTTTTTTTTTTGTTTCAAAACCTTGCAAGTTTCAAAATTTATAGTGGCAAAACCAAGCATGAAACCAATTTCTAAAAAATGCGAAAATTGCTGATTACACTTCAAACAAGGTTAAAACACATCAGAAAAAGACGTAAATGTCAATCCGTGGTTAAATAAATCGGTAGTTAACTGCCGATGAGGTTATATTGATAAATTACTAGTGTTTCCTAGCATCGAGTGAAGTGTGAACAACATTCTTCAAAAAATGCTGCATGAAAGGCCCCACCTTGCCAAGTGAATCAATTGGGTTGGGCCATAATTAACAATTCTAATGTGTACCTAAGGACCCAATGCTAGTAATAGGTTTTGTATATATCCTTTAAAAGTAAGAGTGCAAAATGGTAATAAAAATTTATCTACCATTGTATGATTGATTTAAAAATAATCGCTATTTACATTTTCTGATTGTTTTAACTCTTTAATATACAAAAAATATGAAAACAATGATTTAAAGATGCCCTTAACTAATTTGAGAAGATTAATTTCACAATACAAAATTTAATTTTTCATTACAAATTTTTTATGCCATGGAACAAACAGGAGTTACTATAGGTGCACCAACCCAAGGTGTGGTGCTAAGAAGCAGGTTGAGAGATCCAATGAAGACCCTGACACTCTCATAATCACTTATGAAGGACTCCACTTGCACTTTGCTTATCCTTATTTCATAGTGGGACAATCACATCAATCTCATTCTCATCCACCAATCAAGAAGTCCAAGCCTACCTCTTCACAAGGACCAACCCAAGACCATAAAGCAAGTGAAGTTCATGAAGGTCAGAATATACAAGAAGTCCATGAAGCCCAATCTAGTAATTCTTTGGAACTCATTTCACCCATTTTATTGGACCGTACACAAGATACGGTCCAAGAAAATTTCGGCTCAGAAGGGTTGCTTGAAGATATGGTGCCATTCATGGTTAGAAACCCTACAAACAATGTTGATAGTGATGATTACTCAAAATTTTCCTTCTCCTCACACCTTTCTCCTCCAGCATAA

Protein sequence

>MS.gene46172.t1

MIDSSMSKTMMEKIMSSNWSEDDELLRELLVDESPLLMLPHERVSEVTNISHDSSKDQPFNNFISNIYSGPTISDIENALLVTNHSNQFQQFSSTRISILERSLSKIENKYTLRIKCFGNGLGDDGYRWRKYGQKSIKNSPNPRSYYRCTNPRCGAKKQVERSNEDPDTLIITYEGLHLHFAYPYFIVGQSHQSHSHPPIKKSKPTSSQGPTQDHKASEVHEGQNIQEVHEAQSSNSLELISPILLDRTQDTVQENFGSEGLLEDMVPFMVRNPTNNVDSDDYSKFSFSSHLSPPA