AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46178

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46178.t1 MTR_7g062120 96.097 743 28 1 1 743 1 742 0.0 1485
MS.gene46178.t1 MTR_4g064160 49.125 686 320 10 61 740 21 683 0.0 617
MS.gene46178.t1 MTR_2g097410 44.704 727 325 17 54 740 51 740 0.0 559
MS.gene46178.t1 MTR_4g064150 45.259 696 325 17 60 740 78 732 0.0 544
MS.gene46178.t1 MTR_2g097467 44.510 674 306 12 69 740 46 653 0.0 541
MS.gene46178.t1 MTR_2g097473 43.612 681 302 13 69 740 46 653 0.0 532
MS.gene46178.t1 MTR_4g064120 44.248 678 294 17 67 739 26 624 0.0 530
MS.gene46178.t1 MTR_2g097463 43.314 688 305 16 64 740 41 654 9.23e-180 529
MS.gene46178.t1 MTR_4g064180 43.363 678 300 16 67 739 26 624 3.62e-176 519
MS.gene46178.t1 MTR_4g064200 52.437 513 228 7 238 740 143 649 4.07e-175 517
MS.gene46178.t1 MTR_2g097310 50.000 426 202 5 322 740 216 637 4.33e-152 457
MS.gene46178.t1 MTR_2g097350 53.125 384 174 3 359 740 260 639 4.55e-149 449
MS.gene46178.t1 MTR_2g097390 50.481 416 195 5 332 740 229 640 3.45e-146 442
MS.gene46178.t1 MTR_2g097380 49.315 365 150 5 378 740 229 560 3.87e-125 385
MS.gene46178.t1 MTR_5g097480 32.976 373 249 1 369 741 173 544 1.06e-65 228
MS.gene46178.t1 MTR_2g026250 29.867 375 261 2 368 741 223 596 2.19e-60 214
MS.gene46178.t1 MTR_4g133660 30.481 374 258 2 368 740 170 542 1.09e-59 211
MS.gene46178.t1 MTR_1g029420 31.806 371 252 1 371 741 223 592 1.19e-59 212
MS.gene46178.t1 MTR_3g056110 30.053 376 256 4 369 741 171 542 1.14e-58 208
MS.gene46178.t1 MTR_7g027190 29.895 475 285 10 284 741 230 673 4.30e-58 209
MS.gene46178.t1 MTR_2g082090 30.645 372 257 1 369 740 208 578 4.62e-58 207
MS.gene46178.t1 MTR_5g094450 29.949 394 262 7 358 741 143 532 1.39e-56 202
MS.gene46178.t1 MTR_3g089055 29.650 371 260 1 371 741 196 565 7.13e-55 198
MS.gene46178.t1 MTR_3g089055 29.650 371 260 1 371 741 201 570 8.89e-55 198
MS.gene46178.t1 MTR_4g104020 29.610 385 248 6 370 741 146 520 7.32e-50 183
MS.gene46178.t1 MTR_3g065980 30.789 393 236 8 368 742 167 541 6.77e-48 178
MS.gene46178.t1 MTR_7g074650 30.137 365 241 5 377 741 442 792 7.56e-47 179
MS.gene46178.t1 MTR_8g442410 30.326 399 244 8 363 743 145 527 9.35e-47 175
MS.gene46178.t1 MTR_4g076140 26.636 428 249 4 373 741 48 469 2.45e-44 166
MS.gene46178.t1 MTR_3g022830 27.685 419 244 7 374 741 26 436 1.09e-41 158
MS.gene46178.t1 MTR_2g034260 28.244 393 260 10 364 742 201 585 3.89e-38 150
MS.gene46178.t1 MTR_2g089100 28.501 407 242 10 370 740 49 442 1.17e-37 147
MS.gene46178.t1 MTR_2g034250 26.835 395 264 9 364 742 201 586 1.58e-36 145
MS.gene46178.t1 MTR_4g076020 27.926 376 226 9 377 741 88 429 6.40e-36 141
MS.gene46178.t1 MTR_7g109580 29.487 390 242 10 368 742 184 555 7.15e-36 143
MS.gene46178.t1 MTR_4g102790 25.065 383 267 7 369 740 288 661 2.40e-35 143
MS.gene46178.t1 MTR_1g069725 27.273 418 264 14 343 740 65 462 6.78e-35 139
MS.gene46178.t1 MTR_4g097080 26.316 380 264 8 371 741 131 503 1.18e-34 139
MS.gene46178.t1 MTR_1g096030 28.141 398 239 14 373 741 80 459 2.36e-34 137
MS.gene46178.t1 MTR_2g034280 25.831 391 270 8 364 742 194 576 1.07e-32 134
MS.gene46178.t1 MTR_1g086970 26.598 391 259 13 368 742 101 479 6.79e-32 130
MS.gene46178.t1 MTR_4g077760 26.836 354 241 8 392 741 216 555 6.49e-31 128
MS.gene46178.t1 MTR_5g015490 26.302 384 261 6 373 741 114 490 7.41e-31 127
MS.gene46178.t1 MTR_3g072710 27.688 372 229 10 392 740 145 499 2.62e-27 117
MS.gene46178.t1 MTR_7g057230 24.804 383 251 9 374 740 295 656 9.51e-27 116
MS.gene46178.t1 MTR_5g009080 31.019 216 139 3 373 584 56 265 6.86e-26 112
MS.gene46178.t1 MTR_5g009080 29.252 147 104 0 595 741 332 478 2.10e-16 83.2
MS.gene46178.t1 MTR_6g047750 24.346 382 260 11 374 741 296 662 4.29e-24 108
MS.gene46178.t1 MTR_2g099110 28.000 300 202 5 373 667 74 364 1.33e-23 105
MS.gene46178.t1 MTR_5g058860 24.750 400 255 12 370 740 114 496 2.21e-23 105
MS.gene46178.t1 MTR_5g015950 21.823 417 277 8 370 740 32 445 2.57e-22 101
MS.gene46178.t1 MTR_3g053270 21.823 417 277 8 370 740 32 445 2.57e-22 101
MS.gene46178.t1 MTR_4g095500 23.981 417 266 10 370 740 56 467 6.21e-22 100
MS.gene46178.t1 MTR_8g093070 25.765 392 246 16 366 740 132 495 1.30e-21 99.8
MS.gene46178.t1 MTR_8g020840 24.937 397 253 14 373 742 171 549 1.30e-18 90.5
MS.gene46178.t1 MTR_0092s0100 22.487 378 261 6 374 741 373 728 1.75e-16 84.3
MS.gene46178.t1 MTR_0092s0100 22.487 378 261 6 374 741 376 731 1.77e-16 84.3
MS.gene46178.t1 MTR_4g026485 21.220 410 273 11 349 741 248 624 3.53e-15 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46178.t1 AT2G37650 52.770 686 260 12 72 741 64 701 0.0 660
MS.gene46178.t1 AT2G37650 52.770 686 260 12 72 741 76 713 0.0 660
MS.gene46178.t1 AT1G07530 45.596 772 367 17 8 740 7 764 0.0 608
MS.gene46178.t1 AT2G29060 45.601 682 280 14 70 740 53 654 0.0 561
MS.gene46178.t1 AT2G29060 46.053 684 311 13 70 740 53 691 0.0 559
MS.gene46178.t1 AT2G29065 45.645 574 268 10 179 740 86 627 5.99e-158 472
MS.gene46178.t1 AT1G07520 40.909 704 348 16 51 740 44 693 1.16e-156 471
MS.gene46178.t1 AT1G07520 40.909 704 348 16 51 740 43 692 1.22e-156 471
MS.gene46178.t1 AT1G07520 46.098 551 250 12 204 740 11 528 2.77e-152 454
MS.gene46178.t1 AT1G07520 46.098 551 250 12 204 740 11 528 2.77e-152 454
MS.gene46178.t1 AT5G59450 47.357 473 236 6 276 743 136 600 2.26e-151 454
MS.gene46178.t1 AT3G46600 51.629 399 190 2 347 743 184 581 2.19e-141 427
MS.gene46178.t1 AT3G46600 41.346 104 46 3 43 131 19 122 9.31e-12 68.9
MS.gene46178.t1 AT3G46600 51.629 399 190 2 347 743 152 549 2.82e-141 426
MS.gene46178.t1 AT3G46600 52.941 374 175 1 370 743 1 373 2.76e-139 415
MS.gene46178.t1 AT4G17230 33.690 374 247 1 368 741 153 525 4.39e-63 220
MS.gene46178.t1 AT4G17230 33.690 374 247 1 368 741 153 525 4.39e-63 220
MS.gene46178.t1 AT1G50600 32.976 373 249 1 369 741 155 526 7.95e-63 219
MS.gene46178.t1 AT5G48150 31.818 374 253 2 369 741 118 490 1.02e-62 218
MS.gene46178.t1 AT5G48150 31.818 374 253 2 369 741 118 490 1.02e-62 218
MS.gene46178.t1 AT5G48150 31.818 374 253 2 369 741 118 490 1.02e-62 218
MS.gene46178.t1 AT5G48150 31.818 374 253 2 369 741 118 490 1.02e-62 218
MS.gene46178.t1 AT1G50600 32.976 373 249 1 369 741 226 597 3.32e-62 219
MS.gene46178.t1 AT1G50600 32.976 373 249 1 369 741 230 601 4.95e-62 219
MS.gene46178.t1 AT2G04890 31.099 373 249 2 369 741 49 413 1.66e-60 210
MS.gene46178.t1 AT1G21450 29.765 383 260 4 365 741 214 593 8.87e-54 196
MS.gene46178.t1 AT1G14920 33.075 387 226 11 368 743 167 531 7.92e-50 183
MS.gene46178.t1 AT3G03450 31.620 389 234 9 368 743 178 547 1.31e-49 183
MS.gene46178.t1 AT3G54220 30.097 412 268 7 335 740 252 649 1.11e-47 179
MS.gene46178.t1 AT2G01570 31.865 386 232 12 368 743 219 583 6.52e-47 176
MS.gene46178.t1 AT1G66350 32.527 372 228 10 374 742 156 507 6.60e-47 174
MS.gene46178.t1 AT5G17490 30.052 386 238 9 368 743 155 518 6.10e-45 169
MS.gene46178.t1 AT1G50420 25.175 429 255 5 373 741 57 479 8.94e-43 162
MS.gene46178.t1 AT5G66770 27.493 371 253 8 377 741 224 584 2.48e-40 157
MS.gene46178.t1 AT5G41920 27.981 411 264 10 343 741 10 400 1.34e-36 142
MS.gene46178.t1 AT4G37650 25.320 391 265 8 372 741 145 529 1.23e-34 139
MS.gene46178.t1 AT5G52510 24.870 386 264 7 371 741 266 640 1.93e-32 134
MS.gene46178.t1 AT3G50650 25.070 359 252 5 391 741 193 542 2.24e-32 132
MS.gene46178.t1 AT1G63100 26.911 327 227 5 369 691 248 566 6.55e-31 129
MS.gene46178.t1 AT1G63100 26.911 327 227 5 369 691 273 591 8.30e-31 129
MS.gene46178.t1 AT1G55580 25.121 414 259 9 370 741 41 445 3.10e-27 115
MS.gene46178.t1 AT3G49950 26.667 390 258 10 370 740 27 407 2.12e-23 103
MS.gene46178.t1 AT4G08250 24.714 437 301 12 320 740 52 476 4.48e-21 97.8
MS.gene46178.t1 AT3G13840 25.408 429 270 15 332 741 113 510 9.25e-20 94.0

Find 156 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATCTTAAAGGGTATTT+TGG 0.117928 7.2:+40104737 MS.gene46178:CDS
TGATTAGTCCTTTATAAATT+TGG 0.135271 7.2:-40106008 None:intergenic
CTTTCTTTGTTACTCGATTT+AGG 0.193366 7.2:+40106580 MS.gene46178:CDS
ACCTTGCAGCTTGCCCTTTC+CGG 0.197040 7.2:+40106076 MS.gene46178:CDS
CTAATTGAGAAAGAGATATT+TGG 0.206202 7.2:+40106678 MS.gene46178:CDS
TTCATTCACGGCATTGTTAA+TGG 0.209614 7.2:+40106543 MS.gene46178:CDS
TTTGATCAAAGTATAGAATT+TGG 0.228289 7.2:+40104833 MS.gene46178:CDS
ACTTTCCACAACCTGGTTTC+AGG 0.235016 7.2:+40106268 MS.gene46178:CDS
ATGCCGTGAATGAATATATT+AGG 0.236869 7.2:-40106534 None:intergenic
TTTCTTTGTTACTCGATTTA+GGG 0.239290 7.2:+40106581 MS.gene46178:CDS
GAAGCTCAATTTCCTCATTA+TGG 0.260307 7.2:+40105232 MS.gene46178:CDS
ATGATGGATCAAAATCTTAA+AGG 0.262809 7.2:+40104728 MS.gene46178:CDS
AACAAAGAAAGGAGCATTAA+AGG 0.262853 7.2:-40106568 None:intergenic
CAGAATCAAAGATTTGAAAA+TGG 0.277754 7.2:+40104806 MS.gene46178:CDS
GGATTTCCTAATGGCGAAAC+TGG 0.294992 7.2:-40105082 None:intergenic
ATAGACTTTGGTATCCTCTA+TGG 0.301006 7.2:+40106168 MS.gene46178:CDS
ACGTTCCTGCTTCATAGTTT+AGG 0.305136 7.2:+40105667 MS.gene46178:CDS
CATCCTTATGGAAGAAGATA+TGG 0.310452 7.2:+40104976 MS.gene46178:CDS
GCTAATAAGTTTCTCCCTAA+TGG 0.314940 7.2:+40105415 MS.gene46178:CDS
GAAAGAGGCCATTTCCATTA+GGG 0.330219 7.2:-40105429 None:intergenic
ATTCTTTGCGCGGAAACTTA+AGG 0.336400 7.2:+40105209 MS.gene46178:CDS
AAGTACCCAGTTTCGCCATT+AGG 0.337650 7.2:+40105076 MS.gene46178:CDS
AGACAGCACTCAAACCCTTT+TGG 0.339731 7.2:+40105916 MS.gene46178:CDS
CGATGGCCTTGAGGCACGTT+TGG 0.343289 7.2:+40105972 MS.gene46178:CDS
TGAAAGAGGCCATTTCCATT+AGG 0.351396 7.2:-40105430 None:intergenic
AATCTTTGATTCTGAAGAAC+AGG 0.366185 7.2:-40104797 None:intergenic
TTACCGTGGTAGAAACTTGC+TGG 0.375708 7.2:+40106449 MS.gene46178:CDS
TTACATCAATAACATCCTTA+TGG 0.377855 7.2:+40104964 MS.gene46178:CDS
CTTCCATATCTTCTTCCATA+AGG 0.384242 7.2:-40104979 None:intergenic
TTCTTTGCGCGGAAACTTAA+GGG 0.388418 7.2:+40105210 MS.gene46178:CDS
GGCCTTGAGGCACGTTTGGC+TGG 0.393996 7.2:+40105976 MS.gene46178:CDS
ACAGGAAGCCAAATTTATAA+AGG 0.398179 7.2:+40106000 MS.gene46178:CDS
TGATGGATCAAAATCTTAAA+GGG 0.398790 7.2:+40104729 MS.gene46178:CDS
TAATTGAGAAAGAGATATTT+GGG 0.399383 7.2:+40106679 MS.gene46178:CDS
CGAAGTTTCGGCGGTCCTCC+TGG 0.408211 7.2:-40106231 None:intergenic
TTTGTTGCGTTCAACTATGA+TGG 0.408586 7.2:+40105642 MS.gene46178:CDS
TCGTTTACGCACTTTCTTGT+TGG 0.408613 7.2:+40106925 MS.gene46178:CDS
AGACAAAACTAGTCATCTTC+CGG 0.409694 7.2:-40106095 None:intergenic
GTGTGGATGCTTCCTTCCCT+TGG 0.410286 7.2:-40105557 None:intergenic
GCAAAGATTGATTCCTCAAC+TGG 0.410610 7.2:-40104775 None:intergenic
CGCTGATTTCCATCTCCAAA+AGG 0.411695 7.2:-40105931 None:intergenic
AGACAGTGATCTACAGGTTT+CGG 0.413739 7.2:+40105339 MS.gene46178:CDS
TGCCATTGCCTGTATGTCTC+TGG 0.414792 7.2:-40106753 None:intergenic
GTTTCACTACTAAGACTTTG+AGG 0.415791 7.2:-40105103 None:intergenic
AGACTTTGAGGATTTCCTAA+TGG 0.418659 7.2:-40105091 None:intergenic
GTTTCCGCGCAAAGAATTGT+TGG 0.420942 7.2:-40105203 None:intergenic
TATTGTGCCTCGCGAGGATT+GGG 0.422836 7.2:+40106647 MS.gene46178:CDS
ATTCCTGTGATCCGAAGTTT+CGG 0.426274 7.2:-40106243 None:intergenic
AAGTTTCTCCCTAATGGAAA+TGG 0.436441 7.2:+40105421 MS.gene46178:CDS
CAATCTTGAGTTCCTCAAGC+TGG 0.440153 7.2:-40106395 None:intergenic
GCTATGGCATTATACTCAAA+TGG 0.441312 7.2:-40106354 None:intergenic
TATAGAAACCGGTTCGCGCT+TGG 0.446581 7.2:+40106305 MS.gene46178:CDS
GAAAGATGAACTATCGGTTA+AGG 0.447378 7.2:+40105498 MS.gene46178:CDS
TAGAGAGGCCAGAGACATAC+AGG 0.447934 7.2:+40106745 MS.gene46178:CDS
AAGTACTGTGGAAGGGACTC+TGG 0.450411 7.2:+40105309 MS.gene46178:CDS
GAGGCACGTTTGGCTGGTAC+AGG 0.458499 7.2:+40105982 MS.gene46178:CDS
TTCTCCAGACAGTGATCTAC+AGG 0.458533 7.2:+40105333 MS.gene46178:CDS
AAAGAGCAGTGGAGAAAGTA+AGG 0.458900 7.2:+40106832 MS.gene46178:CDS
AGGGTCCATGTTATAGACTT+TGG 0.460977 7.2:+40106156 MS.gene46178:CDS
AAATCCTCAGTTTGATAAGA+AGG 0.464246 7.2:+40106505 MS.gene46178:CDS
AACTAGTCATCTTCCGGAAA+GGG 0.465913 7.2:-40106089 None:intergenic
ATACGCTGCCAAGCGCGAAC+CGG 0.466569 7.2:-40106313 None:intergenic
GTATTGTGCCTCGCGAGGAT+TGG 0.470328 7.2:+40106646 MS.gene46178:CDS
ATCGAGGTCGTTGTTGAAGA+AGG 0.474514 7.2:-40104884 None:intergenic
CTAAATCGAGTAACAAAGAA+AGG 0.477974 7.2:-40106579 None:intergenic
GTAGCTTTCGATGTATTACT+TGG 0.479635 7.2:-40105757 None:intergenic
GTTGAAGAAGGTGTGTAATC+AGG 0.485043 7.2:-40104872 None:intergenic
CAGGAGGACCGCCGAAACTT+CGG 0.485753 7.2:+40106232 MS.gene46178:CDS
GGTTATTACAAGGTTGGAAA+GGG 0.487158 7.2:+40106898 MS.gene46178:CDS
GCAAGTGGTTATTACAAGGT+TGG 0.488276 7.2:+40106892 MS.gene46178:CDS
GTTTCTATAATTCTCTCTGC+AGG 0.493560 7.2:-40106291 None:intergenic
GAAAGTCTTTGTATGAAAGT+AGG 0.500451 7.2:-40106201 None:intergenic
CATCGAAAGCTACGACTAGT+AGG 0.501175 7.2:+40105767 MS.gene46178:CDS
AAACCTAATATATTCATTCA+CGG 0.501405 7.2:+40106531 MS.gene46178:CDS
CTCTCTGCAGGCCTGAAACC+AGG 0.501776 7.2:-40106279 None:intergenic
CAAATTCGTATTCTTAGAGC+CGG 0.503523 7.2:+40106774 MS.gene46178:CDS
TTTCCTTGAAAACCATAATG+AGG 0.506983 7.2:-40105244 None:intergenic
GCAGAGAGAATTATAGAAAC+CGG 0.512723 7.2:+40106294 MS.gene46178:CDS
TGGTTATTACAAGGTTGGAA+AGG 0.521643 7.2:+40106897 MS.gene46178:CDS
GCAGGCCTGAAACCAGGTTG+TGG 0.523298 7.2:-40106273 None:intergenic
GCTGATTTCCATCTCCAAAA+GGG 0.524319 7.2:-40105930 None:intergenic
AGCTTGTGAAGGTTGTGAGA+GGG 0.527661 7.2:+40106722 MS.gene46178:CDS
CATCTCCTAAACTATGAAGC+AGG 0.528029 7.2:-40105672 None:intergenic
CCGCCGAAACTTCGGATCAC+AGG 0.530115 7.2:+40106240 MS.gene46178:CDS
GGAATAGACTTTCCACAACC+TGG 0.535328 7.2:+40106261 MS.gene46178:CDS
TTTGTATGAAAGTAGGCCAC+TGG 0.536570 7.2:-40106194 None:intergenic
TGAGAAAGAGATATTTGGGA+AGG 0.540140 7.2:+40106683 MS.gene46178:CDS
TCAGAAAATTCACACTCCTC+AGG 0.542538 7.2:-40104929 None:intergenic
AGTTCATCTTTCATCACTCT+AGG 0.543252 7.2:-40105487 None:intergenic
GAAACCTGTAGATCACTGTC+TGG 0.548336 7.2:-40105337 None:intergenic
GATAGCAAGTGGTTATTACA+AGG 0.548641 7.2:+40106888 MS.gene46178:CDS
CTGTGGTAGTCGACAGTCCA+AGG 0.548946 7.2:+40106478 MS.gene46178:CDS
TATGGTACTTGTGTTGATGA+TGG 0.553757 7.2:+40105160 MS.gene46178:CDS
TTGGCTCATATATTTGCCGA+TGG 0.554111 7.2:+40105955 MS.gene46178:CDS
AATTCACACTCCTCAGGAGA+AGG 0.554993 7.2:-40104923 None:intergenic
TGGAGATGGAAATCAGCGGT+TGG 0.560835 7.2:+40105936 MS.gene46178:CDS
CTTGAGTTCCTCAAGCTGGA+TGG 0.564439 7.2:-40106391 None:intergenic
AAGCTACGACTAGTAGGAAA+GGG 0.568799 7.2:+40105773 MS.gene46178:CDS
TGTTCTTTGTGCACAAGCTG+TGG 0.571979 7.2:+40105849 MS.gene46178:CDS
AAACTAGTCATCTTCCGGAA+AGG 0.572499 7.2:-40106090 None:intergenic
CTCCACTGCTCTTTCTACCG+TGG 0.574565 7.2:-40106823 None:intergenic
GGCCAGAGACATACAGGCAA+TGG 0.575120 7.2:+40106751 MS.gene46178:CDS
AGTGTAAGAAGTACTGTGGA+AGG 0.575331 7.2:+40105301 MS.gene46178:CDS
TCCGGAAAGGGCAAGCTGCA+AGG 0.577684 7.2:-40106077 None:intergenic
TTCCTCATGTGTCGAAATCG+AGG 0.578452 7.2:-40104900 None:intergenic
GTATCCTCTATGGTTTCCAG+TGG 0.581982 7.2:+40106178 MS.gene46178:CDS
CAAACGTGCCTCAAGGCCAT+CGG 0.583143 7.2:-40105971 None:intergenic
CTTTGTTACTCGATTTAGGG+AGG 0.585134 7.2:+40106584 MS.gene46178:CDS
TACCAGCCAAACGTGCCTCA+AGG 0.585310 7.2:-40105978 None:intergenic
ATGGACCCTCATTGAACTTG+CGG 0.586513 7.2:-40106142 None:intergenic
GCAATTTCAAAAGGGTGTTG+AGG 0.587105 7.2:+40105390 MS.gene46178:CDS
AGTGATGAAAGATGAACTAT+CGG 0.587276 7.2:+40105492 MS.gene46178:CDS
CAAAGACTTTCATTACGACC+AGG 0.587494 7.2:+40106213 MS.gene46178:CDS
TAGCTTGTGAAGGTTGTGAG+AGG 0.587556 7.2:+40106721 MS.gene46178:CDS
ATTTCAAAAGGGTGTTGAGG+AGG 0.588136 7.2:+40105393 MS.gene46178:CDS
AAAGCTACGACTAGTAGGAA+AGG 0.590220 7.2:+40105772 MS.gene46178:CDS
AAATTCGTATTCTTAGAGCC+GGG 0.595644 7.2:+40106775 MS.gene46178:CDS
ATGGGACACCATCCAGCTTG+AGG 0.596627 7.2:+40106383 MS.gene46178:CDS
TGAAAGTATTGTGCCTCGCG+AGG 0.602499 7.2:+40106641 MS.gene46178:CDS
TGATCCTTCTTATCAAACTG+AGG 0.602637 7.2:-40106509 None:intergenic
AAGGTTGTGAGAGGGTAGAG+AGG 0.605831 7.2:+40106730 MS.gene46178:CDS
ATCATAGTTGAACGCAACAA+AGG 0.606015 7.2:-40105640 None:intergenic
AGTAGTGAAACTGATGGTGT+TGG 0.608255 7.2:+40105115 MS.gene46178:CDS
GATTTCCTAATGGCGAAACT+GGG 0.609142 7.2:-40105081 None:intergenic
AAACTTGCTGGATGAATCTG+TGG 0.612156 7.2:+40106461 MS.gene46178:CDS
TTTACCAACAATTCTTTGCG+CGG 0.613278 7.2:+40105199 MS.gene46178:CDS
TTGAATGTTATAGCTTGTGA+AGG 0.613935 7.2:+40106711 MS.gene46178:CDS
CCTGTGATCCGAAGTTTCGG+CGG 0.615573 7.2:-40106240 None:intergenic
AATCTGCCGCAAGTTCAATG+AGG 0.619310 7.2:+40106136 MS.gene46178:CDS
ATCTGCCGCAAGTTCAATGA+GGG 0.620148 7.2:+40106137 MS.gene46178:CDS
TAATCGACGAAGATAGCAAG+TGG 0.622111 7.2:+40106877 MS.gene46178:CDS
TATATTTGCCGATGGCCTTG+AGG 0.628661 7.2:+40105963 MS.gene46178:CDS
TAAGGACGAGAAGGATGAGA+GGG 0.633129 7.2:+40105516 MS.gene46178:CDS
TAGGCCACTGGAAACCATAG+AGG 0.634472 7.2:-40106182 None:intergenic
TGCCTCGCGAGGATTGGGAA+AGG 0.640111 7.2:+40106652 MS.gene46178:CDS
TTAAGGACGAGAAGGATGAG+AGG 0.641254 7.2:+40105515 MS.gene46178:CDS
ACGACTAGTAGGAAAGGGCG+AGG 0.643128 7.2:+40105778 MS.gene46178:CDS
AGTCTTAGTAGTGAAACTGA+TGG 0.650092 7.2:+40105109 MS.gene46178:CDS
ACATGAGGAACCTTCTCCTG+AGG 0.651054 7.2:+40104913 MS.gene46178:CDS
CGTCGATTACAAAATCCTTG+TGG 0.652977 7.2:-40106863 None:intergenic
GTGTAAGAAGTACTGTGGAA+GGG 0.653533 7.2:+40105302 MS.gene46178:CDS
CAACAAATGAGATCCAGTTG+AGG 0.654653 7.2:+40104762 MS.gene46178:CDS
ATGTCTACTTCTCCTCCGTG+TGG 0.655238 7.2:-40105574 None:intergenic
ATCCTTTCCCAATCCTCGCG+AGG 0.655939 7.2:-40106654 None:intergenic
ACTATCGGTTAAGGACGAGA+AGG 0.656821 7.2:+40105507 MS.gene46178:CDS
TCTTTGTGCACAAGCTGTGG+CGG 0.664334 7.2:+40105852 MS.gene46178:CDS
AAACAGTGTAAGAAGTACTG+TGG 0.668186 7.2:+40105297 MS.gene46178:CDS
AAGGGAAGGAAGCATCCACA+CGG 0.668895 7.2:+40105559 MS.gene46178:CDS
AACCACGGTAGAAAGAGCAG+TGG 0.669300 7.2:+40106821 MS.gene46178:CDS
GGATACCAAAGTCTATAACA+TGG 0.671335 7.2:-40106161 None:intergenic
CATCCAGCAAGTTTCTACCA+CGG 0.681365 7.2:-40106452 None:intergenic
GAAGAAGGTGTGTAATCAGG+TGG 0.694631 7.2:-40104869 None:intergenic
AGTAAGGTCTAGCTACCACA+AGG 0.698237 7.2:+40106848 MS.gene46178:CDS
GACCTCGATTTCGACACATG+AGG 0.702383 7.2:+40104898 MS.gene46178:CDS
AGACTTTCATTACGACCAGG+AGG 0.714994 7.2:+40106216 MS.gene46178:CDS
GGAAGGAAGCATCCACACGG+AGG 0.726324 7.2:+40105562 MS.gene46178:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTACTTTTTTGATAATTA+TGG + chr7.2:40105142-40105161 MS.gene46178:CDS 10.0%
!! AAACCTAATATATTCATTCA+CGG + chr7.2:40106531-40106550 MS.gene46178:CDS 20.0%
!! TAATTGAGAAAGAGATATTT+GGG + chr7.2:40106679-40106698 MS.gene46178:CDS 20.0%
!! TTTGATCAAAGTATAGAATT+TGG + chr7.2:40104833-40104852 MS.gene46178:CDS 20.0%
!!! AAATCATTTTACGAAGTTAT+AGG + chr7.2:40105049-40105068 MS.gene46178:CDS 20.0%
!!! AATCATTTTACGAAGTTATA+GGG + chr7.2:40105050-40105069 MS.gene46178:CDS 20.0%
!!! TGATTAGTCCTTTATAAATT+TGG - chr7.2:40106011-40106030 None:intergenic 20.0%
! ATAATGCCATAGCAAAAAAA+TGG + chr7.2:40106364-40106383 MS.gene46178:CDS 25.0%
! CAGAATCAAAGATTTGAAAA+TGG + chr7.2:40104806-40104825 MS.gene46178:CDS 25.0%
! CTAATTGAGAAAGAGATATT+TGG + chr7.2:40106678-40106697 MS.gene46178:CDS 25.0%
! TAAAAAACAAAACGGGAAAA+AGG + chr7.2:40105801-40105820 MS.gene46178:CDS 25.0%
! TAATGCCATAGCAAAAAAAT+GGG + chr7.2:40106365-40106384 MS.gene46178:CDS 25.0%
! TTACATCAATAACATCCTTA+TGG + chr7.2:40104964-40104983 MS.gene46178:CDS 25.0%
! TTTCTTTGTTACTCGATTTA+GGG + chr7.2:40106581-40106600 MS.gene46178:CDS 25.0%
!! ACCAATTTTGCAATTTCAAA+AGG + chr7.2:40105381-40105400 MS.gene46178:CDS 25.0%
!! ATCATTTTACGAAGTTATAG+GGG + chr7.2:40105051-40105070 MS.gene46178:CDS 25.0%
!! CCAATTTTGCAATTTCAAAA+GGG + chr7.2:40105382-40105401 MS.gene46178:CDS 25.0%
!! TGATGGATCAAAATCTTAAA+GGG + chr7.2:40104729-40104748 MS.gene46178:CDS 25.0%
!!! ATGATGGATCAAAATCTTAA+AGG + chr7.2:40104728-40104747 MS.gene46178:CDS 25.0%
!!! CAAAATCTTAAAGGGTATTT+TGG + chr7.2:40104737-40104756 MS.gene46178:CDS 25.0%
!!! CAACATCAAAATTTTGAAAG+AGG - chr7.2:40105447-40105466 None:intergenic 25.0%
AAATCCTCAGTTTGATAAGA+AGG + chr7.2:40106505-40106524 MS.gene46178:CDS 30.0%
ACAGGAAGCCAAATTTATAA+AGG + chr7.2:40106000-40106019 MS.gene46178:CDS 30.0%
AGTGATGAAAGATGAACTAT+CGG + chr7.2:40105492-40105511 MS.gene46178:CDS 30.0%
ATGCCGTGAATGAATATATT+AGG - chr7.2:40106537-40106556 None:intergenic 30.0%
CTAAATCGAGTAACAAAGAA+AGG - chr7.2:40106582-40106601 None:intergenic 30.0%
CTTTCTTTGTTACTCGATTT+AGG + chr7.2:40106580-40106599 MS.gene46178:CDS 30.0%
GAAAGTCTTTGTATGAAAGT+AGG - chr7.2:40106204-40106223 None:intergenic 30.0%
TTTCCTTGAAAACCATAATG+AGG - chr7.2:40105247-40105266 None:intergenic 30.0%
! AAACTGAGGATTTTATTCCT+TGG - chr7.2:40106498-40106517 None:intergenic 30.0%
! AATCTTTGATTCTGAAGAAC+AGG - chr7.2:40104800-40104819 None:intergenic 30.0%
! TCTTTTCTTTTTGGATCCAA+GGG + chr7.2:40105541-40105560 MS.gene46178:CDS 30.0%
! TTCTTTTCTTTTTGGATCCA+AGG + chr7.2:40105540-40105559 MS.gene46178:CDS 30.0%
! TTGAATGTTATAGCTTGTGA+AGG + chr7.2:40106711-40106730 MS.gene46178:CDS 30.0%
! TTTCCTCATTATGGTTTTCA+AGG + chr7.2:40105241-40105260 MS.gene46178:CDS 30.0%
!! AACAAAGAAAGGAGCATTAA+AGG - chr7.2:40106571-40106590 None:intergenic 30.0%
!!! CCCTTTTGAAATTGCAAAAT+TGG - chr7.2:40105385-40105404 None:intergenic 30.0%
AAATTCGTATTCTTAGAGCC+GGG + chr7.2:40106775-40106794 MS.gene46178:CDS 35.0%
AAGTTTCTCCCTAATGGAAA+TGG + chr7.2:40105421-40105440 MS.gene46178:CDS 35.0%
AGACAAAACTAGTCATCTTC+CGG - chr7.2:40106098-40106117 None:intergenic 35.0%
AGTCTTAGTAGTGAAACTGA+TGG + chr7.2:40105109-40105128 MS.gene46178:CDS 35.0%
AGTTCATCTTTCATCACTCT+AGG - chr7.2:40105490-40105509 None:intergenic 35.0%
ATAGACTTTGGTATCCTCTA+TGG + chr7.2:40106168-40106187 MS.gene46178:CDS 35.0%
ATCATAGTTGAACGCAACAA+AGG - chr7.2:40105643-40105662 None:intergenic 35.0%
CAAATTCGTATTCTTAGAGC+CGG + chr7.2:40106774-40106793 MS.gene46178:CDS 35.0%
CATCCTTATGGAAGAAGATA+TGG + chr7.2:40104976-40104995 MS.gene46178:CDS 35.0%
CTTCCATATCTTCTTCCATA+AGG - chr7.2:40104982-40105001 None:intergenic 35.0%
GAAGCTCAATTTCCTCATTA+TGG + chr7.2:40105232-40105251 MS.gene46178:CDS 35.0%
GATAGCAAGTGGTTATTACA+AGG + chr7.2:40106888-40106907 MS.gene46178:CDS 35.0%
GCAGAGAGAATTATAGAAAC+CGG + chr7.2:40106294-40106313 MS.gene46178:CDS 35.0%
GCTAATAAGTTTCTCCCTAA+TGG + chr7.2:40105415-40105434 MS.gene46178:CDS 35.0%
GCTATGGCATTATACTCAAA+TGG - chr7.2:40106357-40106376 None:intergenic 35.0%
GGATACCAAAGTCTATAACA+TGG - chr7.2:40106164-40106183 None:intergenic 35.0%
GGTAAAAACAGGTAACAACT+AGG - chr7.2:40106434-40106453 None:intergenic 35.0%
GGTTATTACAAGGTTGGAAA+GGG + chr7.2:40106898-40106917 MS.gene46178:CDS 35.0%
GTAGCTTTCGATGTATTACT+TGG - chr7.2:40105760-40105779 None:intergenic 35.0%
GTTTCACTACTAAGACTTTG+AGG - chr7.2:40105106-40105125 None:intergenic 35.0%
GTTTCTATAATTCTCTCTGC+AGG - chr7.2:40106294-40106313 None:intergenic 35.0%
TGAGAAAGAGATATTTGGGA+AGG + chr7.2:40106683-40106702 MS.gene46178:CDS 35.0%
TGATCCTTCTTATCAAACTG+AGG - chr7.2:40106512-40106531 None:intergenic 35.0%
TGGTTATTACAAGGTTGGAA+AGG + chr7.2:40106897-40106916 MS.gene46178:CDS 35.0%
TTCATTCACGGCATTGTTAA+TGG + chr7.2:40106543-40106562 MS.gene46178:CDS 35.0%
TTTACCAACAATTCTTTGCG+CGG + chr7.2:40105199-40105218 MS.gene46178:CDS 35.0%
TTTGTTGCGTTCAACTATGA+TGG + chr7.2:40105642-40105661 MS.gene46178:CDS 35.0%
! AGACTTTGAGGATTTCCTAA+TGG - chr7.2:40105094-40105113 None:intergenic 35.0%
! AGATGCTAAGACGCATTTTA+CGG + chr7.2:40105690-40105709 MS.gene46178:CDS 35.0%
! GAAAGATGAACTATCGGTTA+AGG + chr7.2:40105498-40105517 MS.gene46178:CDS 35.0%
! GAGAGGGATTCTTTTCTTTT+TGG + chr7.2:40105532-40105551 MS.gene46178:CDS 35.0%
! TATGGTACTTGTGTTGATGA+TGG + chr7.2:40105160-40105179 MS.gene46178:CDS 35.0%
!! AAACAGTGTAAGAAGTACTG+TGG + chr7.2:40105297-40105316 MS.gene46178:CDS 35.0%
AAAAGCCTGTTGCAAAAACC+CGG - chr7.2:40106796-40106815 None:intergenic 40.0%
AAACTAGTCATCTTCCGGAA+AGG - chr7.2:40106093-40106112 None:intergenic 40.0%
AAAGAGCAGTGGAGAAAGTA+AGG + chr7.2:40106832-40106851 MS.gene46178:CDS 40.0%
AAAGCTACGACTAGTAGGAA+AGG + chr7.2:40105772-40105791 MS.gene46178:CDS 40.0%
AACTAGTCATCTTCCGGAAA+GGG - chr7.2:40106092-40106111 None:intergenic 40.0%
AAGCTACGACTAGTAGGAAA+GGG + chr7.2:40105773-40105792 MS.gene46178:CDS 40.0%
ACGTTCCTGCTTCATAGTTT+AGG + chr7.2:40105667-40105686 MS.gene46178:CDS 40.0%
AGACAGTGATCTACAGGTTT+CGG + chr7.2:40105339-40105358 MS.gene46178:CDS 40.0%
AGGGTCCATGTTATAGACTT+TGG + chr7.2:40106156-40106175 MS.gene46178:CDS 40.0%
ATTCCTGTGATCCGAAGTTT+CGG - chr7.2:40106246-40106265 None:intergenic 40.0%
ATTCTTTGCGCGGAAACTTA+AGG + chr7.2:40105209-40105228 MS.gene46178:CDS 40.0%
CAAAGACTTTCATTACGACC+AGG + chr7.2:40106213-40106232 MS.gene46178:CDS 40.0%
CAACAAATGAGATCCAGTTG+AGG + chr7.2:40104762-40104781 MS.gene46178:CDS 40.0%
CATCTCCTAAACTATGAAGC+AGG - chr7.2:40105675-40105694 None:intergenic 40.0%
CTTTGTTACTCGATTTAGGG+AGG + chr7.2:40106584-40106603 MS.gene46178:CDS 40.0%
GAAAGAGGCCATTTCCATTA+GGG - chr7.2:40105432-40105451 None:intergenic 40.0%
GATTTCCTAATGGCGAAACT+GGG - chr7.2:40105084-40105103 None:intergenic 40.0%
GCAAGTGGTTATTACAAGGT+TGG + chr7.2:40106892-40106911 MS.gene46178:CDS 40.0%
GGCGAGGTAAAAAACAAAAC+GGG + chr7.2:40105794-40105813 MS.gene46178:CDS 40.0%
GGGCGAGGTAAAAAACAAAA+CGG + chr7.2:40105793-40105812 MS.gene46178:CDS 40.0%
GTTTCTACCACGGTAAAAAC+AGG - chr7.2:40106445-40106464 None:intergenic 40.0%
TAATCGACGAAGATAGCAAG+TGG + chr7.2:40106877-40106896 MS.gene46178:CDS 40.0%
TCAGAAAATTCACACTCCTC+AGG - chr7.2:40104932-40104951 None:intergenic 40.0%
TCGTTTACGCACTTTCTTGT+TGG + chr7.2:40106925-40106944 MS.gene46178:CDS 40.0%
TGAAAGAGGCCATTTCCATT+AGG - chr7.2:40105433-40105452 None:intergenic 40.0%
TTCTTTGCGCGGAAACTTAA+GGG + chr7.2:40105210-40105229 MS.gene46178:CDS 40.0%
TTGGCTCATATATTTGCCGA+TGG + chr7.2:40105955-40105974 MS.gene46178:CDS 40.0%
TTTGTATGAAAGTAGGCCAC+TGG - chr7.2:40106197-40106216 None:intergenic 40.0%
! AGTAGTGAAACTGATGGTGT+TGG + chr7.2:40105115-40105134 MS.gene46178:CDS 40.0%
! CGTCGATTACAAAATCCTTG+TGG - chr7.2:40106866-40106885 None:intergenic 40.0%
! GCAAAGATTGATTCCTCAAC+TGG - chr7.2:40104778-40104797 None:intergenic 40.0%
! GCAACTCATGTGCACTTTTA+TGG - chr7.2:40105885-40105904 None:intergenic 40.0%
! GCTGATTTCCATCTCCAAAA+GGG - chr7.2:40105933-40105952 None:intergenic 40.0%
! GTTGAAGAAGGTGTGTAATC+AGG - chr7.2:40104875-40104894 None:intergenic 40.0%
! TTCTTTTTGGATCCAAGGGA+AGG + chr7.2:40105545-40105564 MS.gene46178:CDS 40.0%
!! AAACTTGCTGGATGAATCTG+TGG + chr7.2:40106461-40106480 MS.gene46178:CDS 40.0%
!! AGTGTAAGAAGTACTGTGGA+AGG + chr7.2:40105301-40105320 MS.gene46178:CDS 40.0%
!! ATTTCAAAAGGGTGTTGAGG+AGG + chr7.2:40105393-40105412 MS.gene46178:CDS 40.0%
!! CTTTTGGAGATGGAAATCAG+CGG + chr7.2:40105932-40105951 MS.gene46178:CDS 40.0%
!! GCAATTTCAAAAGGGTGTTG+AGG + chr7.2:40105390-40105409 MS.gene46178:CDS 40.0%
!! GTGTAAGAAGTACTGTGGAA+GGG + chr7.2:40105302-40105321 MS.gene46178:CDS 40.0%
!!! GGTGTCCCATTTTTTTGCTA+TGG - chr7.2:40106373-40106392 None:intergenic 40.0%
!!! GTTGTTACCTGTTTTTACCG+TGG + chr7.2:40106435-40106454 MS.gene46178:CDS 40.0%
AAGTACCCAGTTTCGCCATT+AGG + chr7.2:40105076-40105095 MS.gene46178:CDS 45.0%
AATCTGCCGCAAGTTCAATG+AGG + chr7.2:40106136-40106155 MS.gene46178:CDS 45.0%
AATTCACACTCCTCAGGAGA+AGG - chr7.2:40104926-40104945 None:intergenic 45.0%
ACTTTCCACAACCTGGTTTC+AGG + chr7.2:40106268-40106287 MS.gene46178:CDS 45.0%
AGACTTTCATTACGACCAGG+AGG + chr7.2:40106216-40106235 MS.gene46178:CDS 45.0%
AGCTTGTGAAGGTTGTGAGA+GGG + chr7.2:40106722-40106741 MS.gene46178:CDS 45.0%
AGTAAGGTCTAGCTACCACA+AGG + chr7.2:40106848-40106867 MS.gene46178:CDS 45.0%
ATCGAGGTCGTTGTTGAAGA+AGG - chr7.2:40104887-40104906 None:intergenic 45.0%
ATCTGCCGCAAGTTCAATGA+GGG + chr7.2:40106137-40106156 MS.gene46178:CDS 45.0%
ATGGACCCTCATTGAACTTG+CGG - chr7.2:40106145-40106164 None:intergenic 45.0%
CAATCTTGAGTTCCTCAAGC+TGG - chr7.2:40106398-40106417 None:intergenic 45.0%
CATCCAGCAAGTTTCTACCA+CGG - chr7.2:40106455-40106474 None:intergenic 45.0%
CATCGAAAGCTACGACTAGT+AGG + chr7.2:40105767-40105786 MS.gene46178:CDS 45.0%
GAAACCTGTAGATCACTGTC+TGG - chr7.2:40105340-40105359 None:intergenic 45.0%
GGAATAGACTTTCCACAACC+TGG + chr7.2:40106261-40106280 MS.gene46178:CDS 45.0%
GGATTTCCTAATGGCGAAAC+TGG - chr7.2:40105085-40105104 None:intergenic 45.0%
GTATCCTCTATGGTTTCCAG+TGG + chr7.2:40106178-40106197 MS.gene46178:CDS 45.0%
GTTTCCGCGCAAAGAATTGT+TGG - chr7.2:40105206-40105225 None:intergenic 45.0%
TAAGGACGAGAAGGATGAGA+GGG + chr7.2:40105516-40105535 MS.gene46178:CDS 45.0%
TGTTCTTTGTGCACAAGCTG+TGG + chr7.2:40105849-40105868 MS.gene46178:CDS 45.0%
TTAAGGACGAGAAGGATGAG+AGG + chr7.2:40105515-40105534 MS.gene46178:CDS 45.0%
TTACCGTGGTAGAAACTTGC+TGG + chr7.2:40106449-40106468 MS.gene46178:CDS 45.0%
TTCCTCATGTGTCGAAATCG+AGG - chr7.2:40104903-40104922 None:intergenic 45.0%
TTCTCCAGACAGTGATCTAC+AGG + chr7.2:40105333-40105352 MS.gene46178:CDS 45.0%
! ACAGGCTTTTGCGAAAACCA+CGG + chr7.2:40106806-40106825 MS.gene46178:CDS 45.0%
! ACTATCGGTTAAGGACGAGA+AGG + chr7.2:40105507-40105526 MS.gene46178:CDS 45.0%
! AGACAGCACTCAAACCCTTT+TGG + chr7.2:40105916-40105935 MS.gene46178:CDS 45.0%
! GAAGAAGGTGTGTAATCAGG+TGG - chr7.2:40104872-40104891 None:intergenic 45.0%
! TAGCTTGTGAAGGTTGTGAG+AGG + chr7.2:40106721-40106740 MS.gene46178:CDS 45.0%
! TATATTTGCCGATGGCCTTG+AGG + chr7.2:40105963-40105982 MS.gene46178:CDS 45.0%
!! CACTCAAACCCTTTTGGAGA+TGG + chr7.2:40105922-40105941 MS.gene46178:CDS 45.0%
!! CGCTGATTTCCATCTCCAAA+AGG - chr7.2:40105934-40105953 None:intergenic 45.0%
AACCACGGTAGAAAGAGCAG+TGG + chr7.2:40106821-40106840 MS.gene46178:CDS 50.0%
AAGGTTGTGAGAGGGTAGAG+AGG + chr7.2:40106730-40106749 MS.gene46178:CDS 50.0%
ACATGAGGAACCTTCTCCTG+AGG + chr7.2:40104913-40104932 MS.gene46178:CDS 50.0%
ATGTCTACTTCTCCTCCGTG+TGG - chr7.2:40105577-40105596 None:intergenic 50.0%
CTTGAGTTCCTCAAGCTGGA+TGG - chr7.2:40106394-40106413 None:intergenic 50.0%
GACCTCGATTTCGACACATG+AGG + chr7.2:40104898-40104917 MS.gene46178:CDS 50.0%
TAGAGAGGCCAGAGACATAC+AGG + chr7.2:40106745-40106764 MS.gene46178:CDS 50.0%
TAGGCCACTGGAAACCATAG+AGG - chr7.2:40106185-40106204 None:intergenic 50.0%
TATTGTGCCTCGCGAGGATT+GGG + chr7.2:40106647-40106666 MS.gene46178:CDS 50.0%
TCTTTGTGCACAAGCTGTGG+CGG + chr7.2:40105852-40105871 MS.gene46178:CDS 50.0%
TGCCATTGCCTGTATGTCTC+TGG - chr7.2:40106756-40106775 None:intergenic 50.0%
TGGAGATGGAAATCAGCGGT+TGG + chr7.2:40105936-40105955 MS.gene46178:CDS 50.0%
! AAGTACTGTGGAAGGGACTC+TGG + chr7.2:40105309-40105328 MS.gene46178:CDS 50.0%
! TAGAGCCGGGTTTTTGCAAC+AGG + chr7.2:40106788-40106807 MS.gene46178:CDS 50.0%
!! AAGGGAAGGAAGCATCCACA+CGG + chr7.2:40105559-40105578 MS.gene46178:CDS 50.0%
!! TATAGAAACCGGTTCGCGCT+TGG + chr7.2:40106305-40106324 MS.gene46178:CDS 50.0%
!! TGAAAGTATTGTGCCTCGCG+AGG + chr7.2:40106641-40106660 MS.gene46178:CDS 50.0%
ACCTTGCAGCTTGCCCTTTC+CGG + chr7.2:40106076-40106095 MS.gene46178:CDS 55.0%
ACGACTAGTAGGAAAGGGCG+AGG + chr7.2:40105778-40105797 MS.gene46178:CDS 55.0%
ATCCTTTCCCAATCCTCGCG+AGG - chr7.2:40106657-40106676 None:intergenic 55.0%
ATGGGACACCATCCAGCTTG+AGG + chr7.2:40106383-40106402 MS.gene46178:CDS 55.0%
CAAACGTGCCTCAAGGCCAT+CGG - chr7.2:40105974-40105993 None:intergenic 55.0%
CCTGTGATCCGAAGTTTCGG+CGG - chr7.2:40106243-40106262 None:intergenic 55.0%
CTCCACTGCTCTTTCTACCG+TGG - chr7.2:40106826-40106845 None:intergenic 55.0%
CTGTGGTAGTCGACAGTCCA+AGG + chr7.2:40106478-40106497 MS.gene46178:CDS 55.0%
GGCCAGAGACATACAGGCAA+TGG + chr7.2:40106751-40106770 MS.gene46178:CDS 55.0%
GTATTGTGCCTCGCGAGGAT+TGG + chr7.2:40106646-40106665 MS.gene46178:CDS 55.0%
GTGTGGATGCTTCCTTCCCT+TGG - chr7.2:40105560-40105579 None:intergenic 55.0%
TACCAGCCAAACGTGCCTCA+AGG - chr7.2:40105981-40106000 None:intergenic 55.0%
ATACGCTGCCAAGCGCGAAC+CGG - chr7.2:40106316-40106335 None:intergenic 60.0%
CAGGAGGACCGCCGAAACTT+CGG + chr7.2:40106232-40106251 MS.gene46178:CDS 60.0%
CCGCCGAAACTTCGGATCAC+AGG + chr7.2:40106240-40106259 MS.gene46178:CDS 60.0%
CTCTCTGCAGGCCTGAAACC+AGG - chr7.2:40106282-40106301 None:intergenic 60.0%
GAGGCACGTTTGGCTGGTAC+AGG + chr7.2:40105982-40106001 MS.gene46178:CDS 60.0%
GCAGGCCTGAAACCAGGTTG+TGG - chr7.2:40106276-40106295 None:intergenic 60.0%
TCCGGAAAGGGCAAGCTGCA+AGG - chr7.2:40106080-40106099 None:intergenic 60.0%
TGCCTCGCGAGGATTGGGAA+AGG + chr7.2:40106652-40106671 MS.gene46178:CDS 60.0%
! CGATGGCCTTGAGGCACGTT+TGG + chr7.2:40105972-40105991 MS.gene46178:CDS 60.0%
! GCATTTTACGGCTCGTCGCG+AGG + chr7.2:40105702-40105721 MS.gene46178:CDS 60.0%
!! GGAAGGAAGCATCCACACGG+AGG + chr7.2:40105562-40105581 MS.gene46178:CDS 60.0%
CGAAGTTTCGGCGGTCCTCC+TGG - chr7.2:40106234-40106253 None:intergenic 65.0%
GGCCTTGAGGCACGTTTGGC+TGG + chr7.2:40105976-40105995 MS.gene46178:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 40104728 40106959 40104728 ID=MS.gene46178
chr7.2 mRNA 40104728 40106959 40104728 ID=MS.gene46178.t1;Parent=MS.gene46178
chr7.2 exon 40104728 40106959 40104728 ID=MS.gene46178.t1.exon1;Parent=MS.gene46178.t1
chr7.2 CDS 40104728 40106959 40104728 ID=cds.MS.gene46178.t1;Parent=MS.gene46178.t1
Gene Sequence

>MS.gene46178

ATGATGGATCAAAATCTTAAAGGGTATTTTGGTTCAACAAATGAGATCCAGTTGAGGAATCAATCTTTGCCTGTTCTTCAGAATCAAAGATTTGAAAATGGTTTCTTTGATCAAAGTATAGAATTTGGTTCTAATATGATACCACCTGATTACACACCTTCTTCAACAACGACCTCGATTTCGACACATGAGGAACCTTCTCCTGAGGAGTGTGAATTTTCTGATGCTGTTTTGAGTTACATCAATAACATCCTTATGGAAGAAGATATGGAAGATAAAACATGTATGCTTCAAGATTCTTTAGATCTTCAAATTGCTGAGAAATCATTTTACGAAGTTATAGGGGAAAAGTACCCAGTTTCGCCATTAGGAAATCCTCAAAGTCTTAGTAGTGAAACTGATGGTGTTGGAGATAATTACTTTTTTGATAATTATGGTACTTGTGTTGATGATGGTGATCTTAGTAGCATTTTTACCAACAATTCTTTGCGCGGAAACTTAAGGGAAGCTCAATTTCCTCATTATGGTTTTCAAGGAAATAGCATTGCACAATCATCTTATAGCTCGACAAACAGTGTAAGAAGTACTGTGGAAGGGACTCTGGATTCTCCAGACAGTGATCTACAGGTTTCGGATCAGAATAGTGAGAGTCAACCAATTTTGCAATTTCAAAAGGGTGTTGAGGAGGCTAATAAGTTTCTCCCTAATGGAAATGGCCTCTTTCAAAATTTTGATGTTGCTAAGTATTCGATGCTAGAGCCTAGAGTGATGAAAGATGAACTATCGGTTAAGGACGAGAAGGATGAGAGGGATTCTTTTCTTTTTGGATCCAAGGGAAGGAAGCATCCACACGGAGGAGAAGTAGACATAGAAGAAAATAGAAGCAGCAAGCAAGCAGCGATTTACTCAGAACCTTTGTTGCGTTCAACTATGATGGATACGTTCCTGCTTCATAGTTTAGGAGATGCTAAGACGCATTTTACGGCTCGTCGCGAGGCGTTACAAGTAAAAACAAAGATTATAACATTGCCAAGTAATACATCGAAAGCTACGACTAGTAGGAAAGGGCGAGGTAAAAAACAAAACGGGAAAAAGGAAGTGATTGATTTGAGAACACTGCTTGTTCTTTGTGCACAAGCTGTGGCGGCAGACGACCATAAAAGTGCACATGAGTTGCTAAAGCAGATCAGACAGCACTCAAACCCTTTTGGAGATGGAAATCAGCGGTTGGCTCATATATTTGCCGATGGCCTTGAGGCACGTTTGGCTGGTACAGGAAGCCAAATTTATAAAGGACTAATCAGTAAAAGAACATCTGCTGCTGACTTTCTGAAAGCTTATCATCTATACCTTGCAGCTTGCCCTTTCCGGAAGATGACTAGTTTTGTCTCGAATGTCACTATATTTAAATCTGCCGCAAGTTCAATGAGGGTCCATGTTATAGACTTTGGTATCCTCTATGGTTTCCAGTGGCCTACTTTCATACAAAGACTTTCATTACGACCAGGAGGACCGCCGAAACTTCGGATCACAGGAATAGACTTTCCACAACCTGGTTTCAGGCCTGCAGAGAGAATTATAGAAACCGGTTCGCGCTTGGCAGCGTATGCTGAATCTTTTAATGTGCCATTTGAGTATAATGCCATAGCAAAAAAATGGGACACCATCCAGCTTGAGGAACTCAAGATTGAAAAAGATGAATTCCTAGTTGTTACCTGTTTTTACCGTGGTAGAAACTTGCTGGATGAATCTGTGGTAGTCGACAGTCCAAGGAATAAAATCCTCAGTTTGATAAGAAGGATCAAACCTAATATATTCATTCACGGCATTGTTAATGGAGCCTTTAATGCTCCTTTCTTTGTTACTCGATTTAGGGAGGCGTTGTTTCACTTCTCTTCACTTTTCGATATGCTTGAAAGTATTGTGCCTCGCGAGGATTGGGAAAGGATGCTAATTGAGAAAGAGATATTTGGGAAGGAAGCATTGAATGTTATAGCTTGTGAAGGTTGTGAGAGGGTAGAGAGGCCAGAGACATACAGGCAATGGCAAATTCGTATTCTTAGAGCCGGGTTTTTGCAACAGGCTTTTGCGAAAACCACGGTAGAAAGAGCAGTGGAGAAAGTAAGGTCTAGCTACCACAAGGATTTTGTAATCGACGAAGATAGCAAGTGGTTATTACAAGGTTGGAAAGGGCGAATCGTTTACGCACTTTCTTGTTGGAAACTTGCTTGA
Protein sequence

>MS.gene46178.t1

MMDQNLKGYFGSTNEIQLRNQSLPVLQNQRFENGFFDQSIEFGSNMIPPDYTPSSTTTSISTHEEPSPEECEFSDAVLSYINNILMEEDMEDKTCMLQDSLDLQIAEKSFYEVIGEKYPVSPLGNPQSLSSETDGVGDNYFFDNYGTCVDDGDLSSIFTNNSLRGNLREAQFPHYGFQGNSIAQSSYSSTNSVRSTVEGTLDSPDSDLQVSDQNSESQPILQFQKGVEEANKFLPNGNGLFQNFDVAKYSMLEPRVMKDELSVKDEKDERDSFLFGSKGRKHPHGGEVDIEENRSSKQAAIYSEPLLRSTMMDTFLLHSLGDAKTHFTARREALQVKTKIITLPSNTSKATTSRKGRGKKQNGKKEVIDLRTLLVLCAQAVAADDHKSAHELLKQIRQHSNPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLISKRTSAADFLKAYHLYLAACPFRKMTSFVSNVTIFKSAASSMRVHVIDFGILYGFQWPTFIQRLSLRPGGPPKLRITGIDFPQPGFRPAERIIETGSRLAAYAESFNVPFEYNAIAKKWDTIQLEELKIEKDEFLVVTCFYRGRNLLDESVVVDSPRNKILSLIRRIKPNIFIHGIVNGAFNAPFFVTRFREALFHFSSLFDMLESIVPREDWERMLIEKEIFGKEALNVIACEGCERVERPETYRQWQIRILRAGFLQQAFAKTTVERAVEKVRSSYHKDFVIDEDSKWLLQGWKGRIVYALSCWKLA