AlfalfaGEDB | MS.gene46205

M. sativa cultivar XinJiangDaYe / MS.gene46205

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46205.t1	XP_013454255.1	93.5	712	22	2	1	688	1	712	0.00E+00	1311.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46205.t1	Q09690	35.4	325	179	5	382	682	679	996	2.6e-44	181.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46205.t1	A0A072UFT7	93.5	712	22	2	1	688	1	712	0.0e+00	1311.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46205.t1	MTR_5g082700	93.539	712	22	2	1	688	1	712	0.0	1369
MS.gene46205.t1	MTR_5g082700	93.558	652	18	2	1	628	1	652	0.0	1248
MS.gene46205.t1	MTR_5g082700	93.058	605	18	2	1	581	1	605	0.0	1150
MS.gene46205.t1	MTR_6g074905	55.469	384	135	4	322	688	807	1171	1.06e-139	439
MS.gene46205.t1	MTR_0349s0030	67.511	237	77	0	452	688	55	291	2.70e-116	350
MS.gene46205.t1	MTR_6g074870	53.628	317	106	5	322	633	67	347	4.60e-105	324
MS.gene46205.t1	MTR_6g074640	37.736	318	97	9	381	688	11	237	2.52e-51	178
MS.gene46205.t1	MTR_6g074750	79.000	100	21	0	486	585	18	117	3.10e-51	174
MS.gene46205.t1	MTR_8g069620	54.430	158	50	1	371	506	14	171	1.98e-45	161
MS.gene46205.t1	MTR_8g070930	32.857	350	163	8	400	682	138	482	3.95e-42	164

Showing 1 to 10 of 161 entries

Previous1 2 3 4 5…17Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46205.t1	AT2G40120	72.485	338	71	1	367	682	227	564	8.37e-179	521
MS.gene46205.t1	AT2G40120	47.283	184	74	7	3	184	1	163	4.62e-22	101
MS.gene46205.t1	AT1G73460	61.518	382	122	3	332	688	786	1167	2.37e-161	495
MS.gene46205.t1	AT1G73460	61.518	382	122	3	332	688	786	1167	2.37e-161	495
MS.gene46205.t1	AT1G73450	64.655	348	101	1	363	688	803	1150	5.10e-160	491
MS.gene46205.t1	AT3G17750	62.162	370	116	2	343	688	767	1136	7.72e-156	480
MS.gene46205.t1	AT5G35980	32.857	350	163	8	400	682	121	465	8.86e-43	167
MS.gene46205.t1	AT5G35980	32.857	350	163	8	400	682	86	430	1.28e-42	166
MS.gene46205.t1	AT5G35980	32.857	350	163	8	400	682	121	465	1.61e-42	165
MS.gene46205.t1	AT3G25840	32.239	335	166	9	396	682	350	671	1.37e-39	155

Showing 1 to 10 of 237 entries

Previous1 2 3 4 5…24Next

Find 120 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAGTCCAGGTTCAGG+AGG	0.632418	5.3:-66834659	MS.gene46205:CDS
AAAATCGATAAACATAGTAT+CGG	0.584593	5.3:+66832514	None:intergenic
AAAGAATTTCTCGTAGTCAA+AGG	0.560157	5.3:+66835837	None:intergenic
AAATCAAACTCTGTATCTTC+TGG	0.423530	5.3:-66835727	MS.gene46205:CDS
AAATCAGGTCCATCAAAATC+AGG	0.444409	5.3:+66834935	None:intergenic
AAATTCAACCAAGAATCTGG+TGG	0.683493	5.3:-66833670	MS.gene46205:CDS
AACTTCGATGGTTAAGTCAT+AGG	0.383815	5.3:+66834487	None:intergenic
AAGAAGGCCTACTGCAAGAC+AGG	0.488234	5.3:-66832462	MS.gene46205:CDS
AAGATTGATATATGGTCGCT+CGG	0.568240	5.3:-66833252	MS.gene46205:CDS
AATCGCGTGCTGTGCCGAAT+TGG	0.358187	5.3:+66835029	None:intergenic

Showing 1 to 10 of 120 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAATTTCTCGTAGTCAA+AGG	+	chr5.3:66832539-66832558	None:intergenic	30.0%
AAATCAAACTCTGTATCTTC+TGG	-	chr5.3:66832646-66832665	MS.gene46205:intron	30.0%
AATTCAGTTAGATGGAAATG+AGG	-	chr5.3:66833554-66833573	MS.gene46205:intron	30.0%
AGAAGATACAGAGTTTGATT+TGG	+	chr5.3:66832647-66832666	None:intergenic	30.0%
ATTATTATCCTCTTCATCTG+CGG	+	chr5.3:66834000-66834019	None:intergenic	30.0%
ATTCAGTTAGATGGAAATGA+GGG	-	chr5.3:66833555-66833574	MS.gene46205:intron	30.0%
CAATGAATAAATGTTCCTGA+TGG	+	chr5.3:66834645-66834664	None:intergenic	30.0%
CTTAATATTCTCGATAATGC+TGG	-	chr5.3:66834142-66834161	MS.gene46205:intron	30.0%
GAATTGTACATAGAAAGAAC+AGG	-	chr5.3:66834078-66834097	MS.gene46205:intron	30.0%
GATGAGGAATTAATTCCATA+TGG	+	chr5.3:66833282-66833301	None:intergenic	30.0%

Showing 1 to 10 of 201 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	66832418	66835977	66832418	ID=MS.gene46205
chr5.3	mRNA	66832418	66835977	66832418	ID=MS.gene46205.t1;Parent=MS.gene46205
chr5.3	exon	66835671	66835977	66835671	ID=MS.gene46205.t1.exon1;Parent=MS.gene46205.t1
chr5.3	CDS	66835671	66835977	66835671	ID=cds.MS.gene46205.t1;Parent=MS.gene46205.t1
chr5.3	exon	66834296	66835127	66834296	ID=MS.gene46205.t1.exon2;Parent=MS.gene46205.t1
chr5.3	CDS	66834296	66835127	66834296	ID=cds.MS.gene46205.t1;Parent=MS.gene46205.t1
chr5.3	exon	66833813	66834026	66833813	ID=MS.gene46205.t1.exon3;Parent=MS.gene46205.t1
chr5.3	CDS	66833813	66834026	66833813	ID=cds.MS.gene46205.t1;Parent=MS.gene46205.t1
chr5.3	exon	66833639	66833746	66833639	ID=MS.gene46205.t1.exon4;Parent=MS.gene46205.t1
chr5.3	CDS	66833639	66833746	66833639	ID=cds.MS.gene46205.t1;Parent=MS.gene46205.t1
chr5.3	exon	66833221	66833499	66833221	ID=MS.gene46205.t1.exon5;Parent=MS.gene46205.t1
chr5.3	CDS	66833221	66833499	66833221	ID=cds.MS.gene46205.t1;Parent=MS.gene46205.t1
chr5.3	exon	66832940	66833083	66832940	ID=MS.gene46205.t1.exon6;Parent=MS.gene46205.t1
chr5.3	CDS	66832940	66833083	66832940	ID=cds.MS.gene46205.t1;Parent=MS.gene46205.t1
chr5.3	exon	66832418	66832600	66832418	ID=MS.gene46205.t1.exon7;Parent=MS.gene46205.t1
chr5.3	CDS	66832418	66832600	66832418	ID=cds.MS.gene46205.t1;Parent=MS.gene46205.t1

Gene Sequence

>MS.gene46205

ATGGCTATGTCGAACAGTGTCGAAGCTGTGTTCGAATTTCTAAGAAAAAATGGATTATCAGAAGCAGAATCAGCTCTAAGACAAGACATCATTGACAAGCACAACAATGATCTTGCTTCCTTTGACTACGAGAAATTCTTTTTTCCGATGGTTCCTCCACCTCCTCCGGTCAAACTCCGCTCATTTACACGGCCGTCGGAGTTGACTTCCGGCGACGGTCAATTCTCCAAATCAAACTCTGTATCTTCTGGAGAACAGTTTGTTAGCATCGGTTCTTCTACTTCTCCTTCTCGTGTTTCTTCTACAGGTACTCTTTTCATTTCAATAATCGATTATTCATTGATTATGGTTAATCACTTCTTAATGATCAATTATCACTTTGTGTTTCTAGTATTAGTGATTATGCTCTGTTTTTTTTTTTTTACTTTGTTTTCTTTTTTGTTAGAACGATGAAAGAATGAGAATTAGTAATTAAGATCGTTAGATTTTTTAAGTGTTCTAATTTTAGTTTCTCCAATTTCTACATTTGGATCGCATAATAGATTGACCAAATTTGAATTTGTGTATTTTATTTAAGTTAATTTCAATTGCATGTTGTGTTTTAGGATTTTAAATTATTCATAGTTGATGTTTATATCTTATATATGATGATCTTGTAACCAAAATATCTTATATATGATCTGCATTTTTATTTTTCTTTAATTGAATTTATGTTTCCAAATTTGGATTATATTAAGCTTAGTTATTAGTATTTTATATTTTTTTAATAATTTCAATTAATGTTGAAAATTTGTAATGCATAAAAATAGGGAAATATATAACCTAGATTTATTTATTTTTTTTGTTGCAGAATTTATCAATCCATATGGAATTAATTCCTCATCTCAGACTCAGAATGATTCTGAATCTTCATCTGATAGATTGTCCCAATTCGGCACAGCACGCGATTATCACGAATTCGATATGCAACATGAACCGTATTGGTATAATGAAAACGATGACGATGATGATTTCATGACTCCTGATTTTGATGGACCTGATTTCTTTGGATGTCAAAGTGAAGATAAGTTTATCTTGAATTCAGAAACCGAAAATCAACAAGATGATTCTCGTGATCTTCGTTACAACTTTGAAGAAATTCAGTTAGATGGAAATGAGGGTTACATAGATAAGTCAATGGAGCAATGCCTTTGTAATCATTCATCTGGAGGTGATGAAAATGCGACTTATTCGAAAGATTATTGTCATGGGGTCCAGAAAGACACTGTTGCACATAATTGTGAAGTTCCATTTTGCAAAAGCAGTCCAGGTTCAGGAGGTTCTTGTAGCGAGGATCCTATGAACTTTAGCTACCTTAATTTGAAGGAAATTAAGCTGAATCTGAATGATTTTCATATGAAGGATATTAATTCGTTTGAGTCTGTTCCTGTGCTTACCATGAAGCATAGTTCAGATTGCTACAAGGATCCCTATGACTTAACCATCGAAGTTGTTGAAACAGATCTACCAAATGGGATCGAAAGCTATGGAGTAAGAGATGACCGAGATTTGAGTGAAGAACTCCATGTTCCGGAGGTTACCGCAGATGAAGAGGATAATAATACCGATGATGACCTCTTAAAATACATTCAAGATGATGAATATGAAGTATTTGAGCTAAGAATTGTACATAGAAAGAACAGGTTTGCTTGTTAATGATCTTGTGTCGTGAACTTTCATTTCTACTTAATATTCTCGATAATGCTGGTGGATAAATTGATTTTGAATGTGTAGGAGACTAGTTGTTGGTAAAATTTGAAATCAAATGCTTTTACTTTTCTTATTTTTAGCACTTCAACTTTTTCGTTTTTGTCATTAATTTAGTTCACCATGATTTTGACCTAACATTATTCACTTTTTCTCTTTAAGTATTCTGACAATAATTTTCTACCATCTATTGTTGAATCTACAGGACTGGATTTGAAGAAAACAAGGAAGTGCCAATTGTGCTCAACTCGGTCATGGCTGGAAGGTACTATGTGACAGAATATCTCGGTTCAGCTGCATTCAGTAGGGTTGTTCAAGCCCATGATCTTCAGATGGGAATCGATGTTTGTTTGAAGATTATTAAAAATGACAAGGATTTCTTTGATCAAAGCCTAGATGAAATCAAGCTTCTTAAACTTGTCAATAAGCATGACCCGGGAGATAAACACCACATACTGCGTCTTTATGACTATTTCTACCATCAGGAACATTTATTCATTGTGACCGAACTTCTGCGTGCAAACTTATATGAATTTCAGAAATTCAACCAAGAATCTGGTGGTGAAGCATATTTTACATTAAAGAGATTGCAGGTTTGTTCAACTAGACTAATTAACTTTTGCACCTATTCCACGTCATTGCTTATCAATTTGAATAGATTTTTTTTTTTTGTCGGAAATAGAGAAATTGTGAAGGCATGATGATCAGAGTTGTTGTTATCCTTCTTTGCAGCTCATTACTCGACAGTGTTTGGAGGCATTGCAATATTTACATAACTTGGGAATTGTTCACTGCGACCTGAAGCCTGAAAACGTTCTGATCAAAAGTTACAAAAAATGTGAAATAAAGATTATTGATCTTGGAAGCAGTTGCTTTAAAACAGACAATCTGTGTCTATATGTACAATCCCGGTCTTATAGAGCTCCTGAAGTGATGTTAGGCCTTCAATATGATGAAAAGATTGATATATGGTCGCTCGGCTGTATTTTGGCTGAGCTATGCTCCGGTGAAGTACGTCCTAATTTGCATTTCTTATGATATTAATGAAATACATTTTTCTATGGCTCTTACAAAAACATGGAATTTTGATTTTCTTTCAAAGATTTCTTTTGTATACTTGTTGATTCTAAGTTCTTTTTTGGCTCCAGGTGCTCTTTCCAAATGATGCAGTCGTGATGATTCTTGCACGCATGATTGGAATGTTTGGTCCTTTTGATATGGAGATGTTGGTGAAAGGGCAGGAAACACATAAGTACTTCACTAAAGAATATGACATTTACTTCATAAATGAGGTTTGTTTCCTTTTAGCTGTTCCTTTTTTAACATATTTCGTTTGTTTTTATTCATCAATCCTAGGTTGAAATACTTTTTCATGTTGCTGCCACCCGGGTCGAGTTGGATTATGCCTGAAAAAACTTTTTACTCGTTAAACAATGTCTCAAATTCGAGTCTCGTGAATGAAAAAAATAGGCCACTCCACTCAACTCGGATTCTAGACCAAAAAAGAAAAGTATATGTTAGTGTTGGTTATTCGCAATAAAGAAAATAAATGACCTTAGATTTATCAGAAAAATCAAGCCATCCATTCAAATTACATTTTTTCCCCAACCAATCTTTAATAATGTACACAGGAGACAGATCAACTAGAGTACATAATTCCAGAAGAGACATCATTTGAGCACCACCTACAGGTCACCGATACTATGTTTATCGATTTTGTCAGTTACTTGCTTAACGTCAACCCCAAAAGAAGGCCTACTGCAAGACAGGCACTAAAACATCCATGGCTTTCCCATGTATACAAGTCCATGTAA

Protein sequence

>MS.gene46205.t1

MAMSNSVEAVFEFLRKNGLSEAESALRQDIIDKHNNDLASFDYEKFFFPMVPPPPPVKLRSFTRPSELTSGDGQFSKSNSVSSGEQFVSIGSSTSPSRVSSTEFINPYGINSSSQTQNDSESSSDRLSQFGTARDYHEFDMQHEPYWYNENDDDDDFMTPDFDGPDFFGCQSEDKFILNSETENQQDDSRDLRYNFEEIQLDGNEGYIDKSMEQCLCNHSSGGDENATYSKDYCHGVQKDTVAHNCEVPFCKSSPGSGGSCSEDPMNFSYLNLKEIKLNLNDFHMKDINSFESVPVLTMKHSSDCYKDPYDLTIEVVETDLPNGIESYGVRDDRDLSEELHVPEVTADEEDNNTDDDLLKYIQDDEYEVFELRIVHRKNRTGFEENKEVPIVLNSVMAGRYYVTEYLGSAAFSRVVQAHDLQMGIDVCLKIIKNDKDFFDQSLDEIKLLKLEHLFIVTELLRANLYEFQKFNQESGGEAYFTLKRLQLITRQCLEALQYLHNLGIVHCDLKPENVLIKSYKKCEIKIIDLGSSCFKTDNLCLYVQSRSYRAPEVMLGLQYDEKIDIWSLGCILAELCSGEVLFPNDAVVMILARMIGMFGPFDMEMLVKGQETHKYFTKEYDIYFINEETDQLEYIIPEETSFEHHLQVTDTMFIDFVSYLLNVNPKRRPTARQALKHPWLSHVYKSM