AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46329

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46329.t1 MTR_4g097920 85.970 335 39 4 1 334 1 328 0.0 579
MS.gene46329.t1 MTR_4g097940 85.672 335 40 4 1 334 1 328 0.0 577
MS.gene46329.t1 MTR_4g097920 85.312 320 39 4 16 334 1 313 0.0 547
MS.gene46329.t1 MTR_5g014640 44.598 361 130 14 1 330 1 322 1.71e-76 238
MS.gene46329.t1 MTR_2g010450 37.784 352 181 11 2 326 5 345 6.98e-56 186
MS.gene46329.t1 MTR_4g092700 48.636 220 104 5 120 334 118 333 1.27e-55 184
MS.gene46329.t1 MTR_5g014600 45.494 233 101 8 120 330 105 333 6.09e-51 172
MS.gene46329.t1 MTR_8g009020 47.340 188 86 4 154 330 136 321 1.23e-50 171
MS.gene46329.t1 MTR_0011s0210 49.708 171 82 2 159 326 181 350 3.36e-49 168
MS.gene46329.t1 MTR_0250s0040 46.512 172 88 3 158 326 85 255 1.51e-48 164
MS.gene46329.t1 MTR_0011s0260 49.708 171 82 2 159 326 181 350 4.13e-48 166
MS.gene46329.t1 MTR_2g104550 43.373 249 124 5 93 330 68 310 5.20e-48 164
MS.gene46329.t1 MTR_6g047570 46.821 173 88 3 157 326 155 326 6.75e-48 164
MS.gene46329.t1 MTR_5g014520 52.353 170 77 2 160 326 156 324 8.35e-48 164
MS.gene46329.t1 MTR_0246s0020 41.767 249 111 9 90 326 143 369 1.27e-46 162
MS.gene46329.t1 MTR_4g067010 44.019 209 98 5 129 334 127 319 4.39e-46 159
MS.gene46329.t1 MTR_5g014560 47.753 178 88 3 160 333 130 306 5.81e-45 156
MS.gene46329.t1 MTR_4g066460 42.512 207 110 4 129 330 121 323 5.35e-44 154
MS.gene46329.t1 MTR_4g009540 45.161 186 92 4 154 330 145 329 1.16e-42 150
MS.gene46329.t1 MTR_0246s0020 41.453 234 103 9 90 311 143 354 5.75e-41 147
MS.gene46329.t1 MTR_4g009110 45.109 184 94 3 153 330 166 348 6.48e-41 146
MS.gene46329.t1 MTR_0246s0050 41.989 181 100 2 146 326 136 311 1.31e-40 145
MS.gene46329.t1 MTR_4g098035 41.989 181 100 2 146 326 157 332 1.87e-40 145
MS.gene46329.t1 MTR_4g097950 48.148 189 75 6 161 333 70 251 4.04e-40 141
MS.gene46329.t1 MTR_2g104490 44.149 188 103 2 144 330 120 306 1.64e-39 142
MS.gene46329.t1 MTR_4g066380 39.419 241 122 7 102 326 84 316 1.23e-38 140
MS.gene46329.t1 MTR_8g009010 40.678 177 70 3 154 329 127 269 9.02e-37 134
MS.gene46329.t1 MTR_4g009540 44.311 167 83 4 154 311 145 310 7.08e-36 132
MS.gene46329.t1 MTR_2g104560 38.919 185 103 4 154 333 47 226 1.23e-35 129
MS.gene46329.t1 MTR_2g104590 37.912 182 85 3 154 329 62 221 4.79e-35 127
MS.gene46329.t1 MTR_7g080780 44.693 179 92 2 152 330 143 314 5.79e-35 130
MS.gene46329.t1 MTR_7g080780 44.693 179 92 2 152 330 156 327 6.27e-35 130
MS.gene46329.t1 MTR_2g104490 43.103 174 97 2 144 316 120 292 3.49e-33 124
MS.gene46329.t1 MTR_8g069740 40.110 182 94 5 135 310 93 265 4.78e-32 120
MS.gene46329.t1 MTR_2g104650 42.623 183 95 5 154 329 87 266 1.48e-31 120
MS.gene46329.t1 MTR_2g104500 41.111 180 91 5 157 330 100 270 1.00e-30 117
MS.gene46329.t1 MTR_2g104530 37.019 208 111 5 130 330 78 272 2.24e-30 117
MS.gene46329.t1 MTR_7g451650 41.216 148 65 5 186 326 59 191 6.09e-22 92.0
MS.gene46329.t1 MTR_6g047550 56.944 72 31 0 157 228 169 240 1.83e-21 92.4
MS.gene46329.t1 MTR_5g014550 39.370 127 73 2 191 314 54 179 2.29e-21 90.5
MS.gene46329.t1 MTR_4g009510 36.875 160 91 6 172 330 53 203 6.30e-21 89.7
MS.gene46329.t1 MTR_4g009420 36.774 155 81 4 172 326 54 191 4.28e-20 87.0
MS.gene46329.t1 MTR_7g050350 38.028 142 70 4 190 326 1 129 1.21e-19 84.0
MS.gene46329.t1 MTR_7g451650 38.028 142 70 4 190 326 1 129 1.21e-19 84.0
MS.gene46329.t1 MTR_7g451650 40.000 135 63 4 186 315 59 180 2.36e-19 84.7
MS.gene46329.t1 MTR_4g009420 39.231 130 63 3 186 315 67 180 1.95e-17 80.1
MS.gene46329.t1 MTR_8g024790 28.079 203 122 8 142 328 270 464 7.66e-16 78.6
MS.gene46329.t1 MTR_1g072320 34.459 148 80 4 161 293 470 615 1.36e-14 75.1
MS.gene46329.t1 MTR_5g030430 31.977 172 82 8 144 290 479 640 1.04e-13 72.4
MS.gene46329.t1 MTR_7g096350 49.296 71 33 1 144 214 341 408 1.34e-13 71.6
MS.gene46329.t1 MTR_8g027495 33.051 118 62 2 157 268 454 560 1.86e-13 71.6
MS.gene46329.t1 MTR_8g024770 30.216 139 80 4 142 267 258 392 5.58e-13 69.7
MS.gene46329.t1 MTR_8g067280 34.043 141 76 4 144 270 448 585 5.61e-13 70.1
MS.gene46329.t1 MTR_7g117670 51.786 56 27 0 161 216 402 457 2.09e-12 68.2
MS.gene46329.t1 MTR_8g064700 29.448 163 106 3 154 308 237 398 2.80e-12 67.4
MS.gene46329.t1 MTR_8g098275 41.791 67 39 0 158 224 305 371 1.01e-11 66.2
MS.gene46329.t1 MTR_8g098275 41.791 67 39 0 158 224 398 464 1.11e-11 66.2
MS.gene46329.t1 MTR_8g098275 41.791 67 39 0 158 224 241 307 1.14e-11 65.9
MS.gene46329.t1 MTR_4g057270 28.289 152 91 5 163 303 151 295 9.82e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46329.t1 AT2G22760 51.667 180 79 5 154 326 112 290 6.50e-53 176
MS.gene46329.t1 AT4G37850 48.276 203 96 5 139 334 128 328 1.64e-52 176
MS.gene46329.t1 AT4G37850 48.276 203 96 5 139 334 128 328 1.64e-52 176
MS.gene46329.t1 AT2G22760 51.829 164 72 4 154 311 112 274 1.18e-47 162
MS.gene46329.t1 AT2G22770 44.444 225 97 5 130 330 98 318 8.89e-47 161
MS.gene46329.t1 AT2G22750 47.938 194 91 4 148 333 113 304 7.78e-45 155
MS.gene46329.t1 AT2G22750 47.938 194 91 4 148 333 137 328 1.03e-44 156
MS.gene46329.t1 AT2G22750 47.938 194 91 4 148 333 141 332 1.04e-44 156
MS.gene46329.t1 AT2G22750 47.938 194 90 5 148 333 113 303 1.98e-43 152
MS.gene46329.t1 AT2G22750 47.938 194 90 5 148 333 141 331 2.47e-43 152
MS.gene46329.t1 AT1G32640 35.897 156 87 7 144 290 438 589 3.92e-16 79.7
MS.gene46329.t1 AT2G46510 48.780 82 39 1 135 216 372 450 1.28e-15 78.2
MS.gene46329.t1 AT1G01260 26.749 243 140 8 27 268 316 521 7.75e-14 72.8
MS.gene46329.t1 AT1G01260 26.749 243 140 8 27 268 316 521 7.75e-14 72.8
MS.gene46329.t1 AT1G01260 26.749 243 140 8 27 268 316 521 7.75e-14 72.8
MS.gene46329.t1 AT5G46760 33.582 134 79 3 144 270 401 531 1.43e-12 68.9
MS.gene46329.t1 AT4G17880 32.847 137 72 4 144 270 402 528 2.50e-12 68.2
MS.gene46329.t1 AT1G63650 35.955 89 56 1 156 243 400 488 4.49e-12 67.4
MS.gene46329.t1 AT1G63650 35.955 89 56 1 156 243 400 488 4.49e-12 67.4
MS.gene46329.t1 AT1G63650 35.955 89 56 1 156 243 400 488 4.49e-12 67.4
MS.gene46329.t1 AT4G16430 42.045 88 46 2 142 224 297 384 6.28e-12 66.6
MS.gene46329.t1 AT4G09820 50.820 61 30 0 154 214 356 416 1.63e-11 65.5
MS.gene46329.t1 AT1G12860 29.518 166 101 6 162 315 268 429 6.49e-11 63.5
MS.gene46329.t1 AT1G12860 30.769 156 92 6 162 305 268 419 8.63e-11 63.2

Find 59 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTGAAGCAAGGGTTTC+TGG 0.149381 8.4:+24631595 MS.gene46329:CDS
TATGGAGAAAACTTGAATTT+TGG 0.186505 8.4:+24631050 MS.gene46329:CDS
GATGGACAAGGCAACTATTT+TGG 0.186609 8.4:+24631408 MS.gene46329:intron
TGCATTCCAGTTTGATGATA+TGG 0.223416 8.4:+24630767 MS.gene46329:CDS
TTTGAATTAACAGGGATTAA+TGG 0.241351 8.4:+24630698 MS.gene46329:intron
GCTCTTTCATCTCTTCTTCC+TGG 0.251328 8.4:+24631206 MS.gene46329:CDS
TCTTCTTCCTGGACTCAAAA+AGG 0.317343 8.4:+24631217 MS.gene46329:CDS
TGTTGTATACTTACAAATTC+AGG 0.318270 8.4:-24630467 None:intergenic
TTCACCCTTGCATCCATGTT+GGG 0.322043 8.4:-24631005 None:intergenic
AGAATTGTTCTGTGTGCTTT+CGG 0.323320 8.4:-24630874 None:intergenic
AGAATATTGCTTGACAATAA+AGG 0.327738 8.4:+24632157 MS.gene46329:CDS
AGCAGTTCTACTTTGCCATT+TGG 0.363549 8.4:+24631715 MS.gene46329:CDS
ACATGATCTTGAGCCTGAAT+AGG 0.366395 8.4:-24631137 None:intergenic
CATGATCTTGAGCCTGAATA+GGG 0.371001 8.4:-24631136 None:intergenic
CTTCACCCTTGCATCCATGT+TGG 0.390761 8.4:-24631006 None:intergenic
TTCAAAAGAAATAATGATCT+TGG 0.392467 8.4:-24630982 None:intergenic
TCGCTTGTTGTTGATGTTGT+TGG 0.394714 8.4:-24630844 None:intergenic
AAGAAGCCTAAAACCGAGAT+TGG 0.405458 8.4:+24631026 MS.gene46329:CDS
TGATATAACAATTGTTGCTC+AGG 0.416686 8.4:+24631750 MS.gene46329:CDS
AATAAATAGAAACCCTATTC+AGG 0.429952 8.4:+24631124 MS.gene46329:CDS
AGTATGCCATATCATCAAAC+TGG 0.434714 8.4:-24630773 None:intergenic
TTGACCAGGACTACTTTCAA+TGG 0.436916 8.4:-24630901 None:intergenic
ATGAAAGAGCAATGAATCTC+TGG 0.443321 8.4:-24631193 None:intergenic
TGACCAGGACTACTTTCAAT+GGG 0.452873 8.4:-24630900 None:intergenic
TGAGTATTGCGGTCGCAGTT+CGG 0.460089 8.4:-24631660 None:intergenic
TTCCCCATTGAAAGTAGTCC+TGG 0.464737 8.4:+24630897 MS.gene46329:CDS
TCAAGATAGTTATTTCCAAA+TGG 0.471769 8.4:-24631730 None:intergenic
CCTAAAACCGAGATTGGGTA+TGG 0.484824 8.4:+24631032 MS.gene46329:CDS
TGGAATGCATATGAATCCAT+TGG 0.489021 8.4:-24630753 None:intergenic
GGAACGAGTGAAGACTTTAG+AGG 0.491147 8.4:+24631462 MS.gene46329:CDS
TACAAATTCAGGCATGTAGT+TGG 0.494277 8.4:-24630456 None:intergenic
AGGAATAAGTACTCTCTTGT+GGG 0.507070 8.4:-24630815 None:intergenic
TCAGGCTCAAGATCATGTTA+TGG 0.510343 8.4:+24631142 MS.gene46329:CDS
ACTTCCGAAAATTGAAGCAA+GGG 0.522336 8.4:+24631588 MS.gene46329:CDS
TCTCGTAAGGAGCATAAGTC+AGG 0.525482 8.4:+24632181 MS.gene46329:CDS
CACTTCCGAAAATTGAAGCA+AGG 0.531807 8.4:+24631587 MS.gene46329:CDS
TGTTCTGTGTGCTTTCGGAA+TGG 0.533620 8.4:-24630869 None:intergenic
AAATTCAGGCATGTAGTTGG+TGG 0.541463 8.4:-24630453 None:intergenic
GTTGATGTTGTTGGTATGAG+AGG 0.543066 8.4:-24630835 None:intergenic
GAGGAATAAGTACTCTCTTG+TGG 0.546666 8.4:-24630816 None:intergenic
TTTGGAAGTGTGATATCTCA+AGG 0.551675 8.4:+24631068 MS.gene46329:CDS
AGAAGCCTAAAACCGAGATT+GGG 0.552154 8.4:+24631027 MS.gene46329:CDS
AAAACATATGAAGCAACTAC+AGG 0.565504 8.4:+24631441 MS.gene46329:CDS
TTGAACCCAACATGGATGCA+AGG 0.568189 8.4:+24631000 MS.gene46329:CDS
ATCCATTGTGACAAATATTG+TGG 0.568305 8.4:+24631637 MS.gene46329:CDS
TTCTAATTCGATGAGTATTG+CGG 0.578276 8.4:-24631671 None:intergenic
TGAACCCAACATGGATGCAA+GGG 0.578656 8.4:+24631001 MS.gene46329:CDS
GGCCACAATATTTGTCACAA+TGG 0.583000 8.4:-24631639 None:intergenic
TAGTGATCATGAATATCCAA+TGG 0.584018 8.4:+24630737 MS.gene46329:CDS
TGACAATAAAGGATCTCGTA+AGG 0.599743 8.4:+24632168 MS.gene46329:CDS
GAATTAACAGGGATTAATGG+AGG 0.608513 8.4:+24630701 MS.gene46329:intron
TTATTATAAACGAGAGAACA+AGG 0.617033 8.4:+24631094 MS.gene46329:CDS
GGAATAAGTACTCTCTTGTG+GGG 0.633544 8.4:-24630814 None:intergenic
ACTTTGCATGCAGATGGACA+AGG 0.646531 8.4:+24631396 MS.gene46329:intron
TATGGCAGAAAGAAGACGAA+GGG 0.657033 8.4:+24631160 MS.gene46329:CDS
GCTGAAGCAACAGATTGACC+AGG 0.668418 8.4:-24630915 None:intergenic
TTATGGCAGAAAGAAGACGA+AGG 0.702887 8.4:+24631159 MS.gene46329:CDS
GACCAGGACTACTTTCAATG+GGG 0.715740 8.4:-24630899 None:intergenic
TAGAACTGCTCTGAACAGTG+AGG 0.757817 8.4:-24631702 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTTAAAATTTTTAAGT+TGG - chr8.4:24631900-24631919 None:intergenic 10.0%
!! GTTAATTCAAAGAAAAAAAA+AGG - chr8.4:24630689-24630708 None:intergenic 15.0%
!!! ATTTTAATTAGGTTTTAAGT+TGG - chr8.4:24631928-24631947 None:intergenic 15.0%
!!! CAGATTTTATTTAATTTTCA+TGG + chr8.4:24632104-24632123 MS.gene46329:intron 15.0%
!!! TAGAATTTAGAATTTTTGTA+TGG - chr8.4:24630659-24630678 None:intergenic 15.0%
!!! TTTTTTTCTTTGAATTAACA+GGG + chr8.4:24630690-24630709 MS.gene46329:intron 15.0%
!!! TTTTTTTTCTTTGAATTAAC+AGG + chr8.4:24630689-24630708 MS.gene46329:intron 15.0%
!! TCATGTTGATATATTCTATT+TGG + chr8.4:24632010-24632029 MS.gene46329:intron 20.0%
!! TTCAAAAGAAATAATGATCT+TGG - chr8.4:24630985-24631004 None:intergenic 20.0%
!!! CTCTTATGATCATTTTAATT+AGG - chr8.4:24631939-24631958 None:intergenic 20.0%
!!! GTTTATTTTAAGTTTCTAGT+TGG + chr8.4:24631841-24631860 MS.gene46329:intron 20.0%
! AATAAATAGAAACCCTATTC+AGG + chr8.4:24631124-24631143 MS.gene46329:CDS 25.0%
! AGAATATTGCTTGACAATAA+AGG + chr8.4:24632157-24632176 MS.gene46329:CDS 25.0%
! TATACAACATAGTGTATGTT+TGG + chr8.4:24630481-24630500 MS.gene46329:intron 25.0%
! TGTTAGTATAGTTGCAATTT+AGG + chr8.4:24631315-24631334 MS.gene46329:intron 25.0%
! TGTTGTATACTTACAAATTC+AGG - chr8.4:24630470-24630489 None:intergenic 25.0%
! TTATTATAAACGAGAGAACA+AGG + chr8.4:24631094-24631113 MS.gene46329:CDS 25.0%
! TTTGAATTAACAGGGATTAA+TGG + chr8.4:24630698-24630717 MS.gene46329:intron 25.0%
!! GATATTATGGTTTTCAATTG+CGG - chr8.4:24631348-24631367 None:intergenic 25.0%
!! TAAGCCTCTATATTTTATCT+CGG + chr8.4:24632069-24632088 MS.gene46329:intron 25.0%
!! TATGGAGAAAACTTGAATTT+TGG + chr8.4:24631050-24631069 MS.gene46329:CDS 25.0%
!! TCAAGATAGTTATTTCCAAA+TGG - chr8.4:24631733-24631752 None:intergenic 25.0%
!! TTTCAAAGTGAGTAATGTTT+TGG + chr8.4:24631873-24631892 MS.gene46329:intron 25.0%
!! TTTTCCGAGATAAAATATAG+AGG - chr8.4:24632076-24632095 None:intergenic 25.0%
AAAACATATGAAGCAACTAC+AGG + chr8.4:24631441-24631460 MS.gene46329:CDS 30.0%
AACTAGGCTAGAACATAAAA+TGG - chr8.4:24631963-24631982 None:intergenic 30.0%
ATCCATTGTGACAAATATTG+TGG + chr8.4:24631637-24631656 MS.gene46329:CDS 30.0%
CTACTTGATAGAGGATATTA+TGG - chr8.4:24631361-24631380 None:intergenic 30.0%
TACTCATCACAAGAAAAACT+AGG - chr8.4:24631979-24631998 None:intergenic 30.0%
TAGTGATCATGAATATCCAA+TGG + chr8.4:24630737-24630756 MS.gene46329:CDS 30.0%
TGATATAACAATTGTTGCTC+AGG + chr8.4:24631750-24631769 MS.gene46329:CDS 30.0%
TGGTTAATACTACTTGATAG+AGG - chr8.4:24631370-24631389 None:intergenic 30.0%
TTTGGATTTGCAAAGAGATT+CGG + chr8.4:24630499-24630518 MS.gene46329:intron 30.0%
! TATTTCTTTTGAACCCAACA+TGG + chr8.4:24630992-24631011 MS.gene46329:CDS 30.0%
! TTCTAATTCGATGAGTATTG+CGG - chr8.4:24631674-24631693 None:intergenic 30.0%
!! TTACTCACTTTGAAACAAGT+TGG - chr8.4:24631868-24631887 None:intergenic 30.0%
!!! AGCTGATTCGACTTTTTTAT+TGG - chr8.4:24631497-24631516 None:intergenic 30.0%
AAAATTGAAGCAAGGGTTTC+TGG + chr8.4:24631595-24631614 MS.gene46329:CDS 35.0%
ACTTCCGAAAATTGAAGCAA+GGG + chr8.4:24631588-24631607 MS.gene46329:CDS 35.0%
AGAATTGTTCTGTGTGCTTT+CGG - chr8.4:24630877-24630896 None:intergenic 35.0%
AGGAATAAGTACTCTCTTGT+GGG - chr8.4:24630818-24630837 None:intergenic 35.0%
AGTATGCCATATCATCAAAC+TGG - chr8.4:24630776-24630795 None:intergenic 35.0%
ATGAAAGAGCAATGAATCTC+TGG - chr8.4:24631196-24631215 None:intergenic 35.0%
GAATTAACAGGGATTAATGG+AGG + chr8.4:24630701-24630720 MS.gene46329:intron 35.0%
GCTTGTCTTAATTGCATGTT+TGG + chr8.4:24631806-24631825 MS.gene46329:intron 35.0%
TACAAATTCAGGCATGTAGT+TGG - chr8.4:24630459-24630478 None:intergenic 35.0%
TGACAATAAAGGATCTCGTA+AGG + chr8.4:24632168-24632187 MS.gene46329:CDS 35.0%
TGGAATGCATATGAATCCAT+TGG - chr8.4:24630756-24630775 None:intergenic 35.0%
! CTTCAATTTTCGGAAGTGAT+TGG - chr8.4:24631585-24631604 None:intergenic 35.0%
! GAAACCCTTGCTTCAATTTT+CGG - chr8.4:24631595-24631614 None:intergenic 35.0%
! TGCATTCCAGTTTGATGATA+TGG + chr8.4:24630767-24630786 MS.gene46329:CDS 35.0%
! TTTGGAAGTGTGATATCTCA+AGG + chr8.4:24631068-24631087 MS.gene46329:CDS 35.0%
!!! ATTAGTACCTTTTTGAGTCC+AGG - chr8.4:24631227-24631246 None:intergenic 35.0%
!!! GACTTGAGTCTTAGTTTTGT+TGG - chr8.4:24630945-24630964 None:intergenic 35.0%
AAATTCAGGCATGTAGTTGG+TGG - chr8.4:24630456-24630475 None:intergenic 40.0%
AAGAAGCCTAAAACCGAGAT+TGG + chr8.4:24631026-24631045 MS.gene46329:CDS 40.0%
ACATGATCTTGAGCCTGAAT+AGG - chr8.4:24631140-24631159 None:intergenic 40.0%
AGAAGCCTAAAACCGAGATT+GGG + chr8.4:24631027-24631046 MS.gene46329:CDS 40.0%
AGCAGTTCTACTTTGCCATT+TGG + chr8.4:24631715-24631734 MS.gene46329:CDS 40.0%
ATGTTCACTTTGCATGCAGA+TGG + chr8.4:24631390-24631409 MS.gene46329:intron 40.0%
CACTTCCGAAAATTGAAGCA+AGG + chr8.4:24631587-24631606 MS.gene46329:CDS 40.0%
CATGATCTTGAGCCTGAATA+GGG - chr8.4:24631139-24631158 None:intergenic 40.0%
GAGGAATAAGTACTCTCTTG+TGG - chr8.4:24630819-24630838 None:intergenic 40.0%
GGAATAAGTACTCTCTTGTG+GGG - chr8.4:24630817-24630836 None:intergenic 40.0%
GGCCACAATATTTGTCACAA+TGG - chr8.4:24631642-24631661 None:intergenic 40.0%
GTTGATGTTGTTGGTATGAG+AGG - chr8.4:24630838-24630857 None:intergenic 40.0%
TATGGCAGAAAGAAGACGAA+GGG + chr8.4:24631160-24631179 MS.gene46329:CDS 40.0%
TCAGGCTCAAGATCATGTTA+TGG + chr8.4:24631142-24631161 MS.gene46329:CDS 40.0%
TCTGCATGCAAAGTGAACAT+TGG - chr8.4:24631390-24631409 None:intergenic 40.0%
TCTTCTTCCTGGACTCAAAA+AGG + chr8.4:24631217-24631236 MS.gene46329:CDS 40.0%
TGACCAGGACTACTTTCAAT+GGG - chr8.4:24630903-24630922 None:intergenic 40.0%
TTATGGCAGAAAGAAGACGA+AGG + chr8.4:24631159-24631178 MS.gene46329:CDS 40.0%
TTGACCAGGACTACTTTCAA+TGG - chr8.4:24630904-24630923 None:intergenic 40.0%
! GATGGACAAGGCAACTATTT+TGG + chr8.4:24631408-24631427 MS.gene46329:intron 40.0%
! GTTTTCTCCATACCCAATCT+CGG - chr8.4:24631042-24631061 None:intergenic 40.0%
!! TCGCTTGTTGTTGATGTTGT+TGG - chr8.4:24630847-24630866 None:intergenic 40.0%
ACTTTGCATGCAGATGGACA+AGG + chr8.4:24631396-24631415 MS.gene46329:intron 45.0%
CCTAAAACCGAGATTGGGTA+TGG + chr8.4:24631032-24631051 MS.gene46329:CDS 45.0%
GACCAGGACTACTTTCAATG+GGG - chr8.4:24630902-24630921 None:intergenic 45.0%
GCTCTTTCATCTCTTCTTCC+TGG + chr8.4:24631206-24631225 MS.gene46329:CDS 45.0%
GGAACGAGTGAAGACTTTAG+AGG + chr8.4:24631462-24631481 MS.gene46329:CDS 45.0%
TGAACCCAACATGGATGCAA+GGG + chr8.4:24631001-24631020 MS.gene46329:CDS 45.0%
TGTTCTGTGTGCTTTCGGAA+TGG - chr8.4:24630872-24630891 None:intergenic 45.0%
TTCACCCTTGCATCCATGTT+GGG - chr8.4:24631008-24631027 None:intergenic 45.0%
TTCCCCATTGAAAGTAGTCC+TGG + chr8.4:24630897-24630916 MS.gene46329:CDS 45.0%
TTGAACCCAACATGGATGCA+AGG + chr8.4:24631000-24631019 MS.gene46329:CDS 45.0%
! CCATACCCAATCTCGGTTTT+AGG - chr8.4:24631035-24631054 None:intergenic 45.0%
! GGAGCATAAGTCAGGTTTTG+AGG + chr8.4:24632189-24632208 MS.gene46329:CDS 45.0%
! TAGAACTGCTCTGAACAGTG+AGG - chr8.4:24631705-24631724 None:intergenic 45.0%
! TCTCGTAAGGAGCATAAGTC+AGG + chr8.4:24632181-24632200 MS.gene46329:CDS 45.0%
CTTCACCCTTGCATCCATGT+TGG - chr8.4:24631009-24631028 None:intergenic 50.0%
GCTGAAGCAACAGATTGACC+AGG - chr8.4:24630918-24630937 None:intergenic 50.0%
! TGAGTATTGCGGTCGCAGTT+CGG - chr8.4:24631663-24631682 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 24630437 24632223 24630437 ID=MS.gene46329
chr8.4 mRNA 24630437 24632223 24630437 ID=MS.gene46329.t1;Parent=MS.gene46329
chr8.4 exon 24630437 24630475 24630437 ID=MS.gene46329.t1.exon1;Parent=MS.gene46329.t1
chr8.4 CDS 24630437 24630475 24630437 ID=cds.MS.gene46329.t1;Parent=MS.gene46329.t1
chr8.4 exon 24630711 24631238 24630711 ID=MS.gene46329.t1.exon2;Parent=MS.gene46329.t1
chr8.4 CDS 24630711 24631238 24630711 ID=cds.MS.gene46329.t1;Parent=MS.gene46329.t1
chr8.4 exon 24631409 24631771 24631409 ID=MS.gene46329.t1.exon3;Parent=MS.gene46329.t1
chr8.4 CDS 24631409 24631771 24631409 ID=cds.MS.gene46329.t1;Parent=MS.gene46329.t1
chr8.4 exon 24632149 24632223 24632149 ID=MS.gene46329.t1.exon4;Parent=MS.gene46329.t1
chr8.4 CDS 24632149 24632223 24632149 ID=cds.MS.gene46329.t1;Parent=MS.gene46329.t1
Gene Sequence

>MS.gene46329

ATGATTCAAATTTCGTCCACCAACTACATGCCTGAATTTGTAAGTATACAACATAGTGTATGTTTGGATTTGCAAAGAGATTCGGATAAACAAAATCACTATCATAATGTTGATATAAACTATATTGCTTCAACAAAATCGTAGTGTGACTGTGATTTTGCAAAACTCGCATGTCATACAAACATAACTTAAAGCAAACTAAGCTAACTACAAAAACATCCATACAAAAATTCTAAATTCTATTACTTACCTTTTTTTTTCTTTGAATTAACAGGGATTAATGGAGGACAATACTTTGTTTAGTGATCATGAATATCCAATGGATTCATATGCATTCCAGTTTGATGATATGGCATACTTCAAGTCTTTCTCAGCATCCCCACAAGAGAGTACTTATTCCTCTCATACCAACAACATCAACAACAAGCGAATCCATTCCGAAAGCACACAGAACAATTCTTTCCCCATTGAAAGTAGTCCTGGTCAATCTGTTGCTTCAGCTACACCAACAAAACTAAGACTCAAGTCTTCTTCATCTTCATCTTCCAAGATCATTATTTCTTTTGAACCCAACATGGATGCAAGGGTGAAGAAGCCTAAAACCGAGATTGGGTATGGAGAAAACTTGAATTTTGGAAGTGTGATATCTCAAGGTGATTATTATAAACGAGAGAACAAGGTTGCTGCAATAAATAGAAACCCTATTCAGGCTCAAGATCATGTTATGGCAGAAAGAAGACGAAGGGAAAAGCTTAGCCAGAGATTCATTGCTCTTTCATCTCTTCTTCCTGGACTCAAAAAGGTACTAATATATTCTAATAAATCTCATGCACATAAATATGCGATCTTTAACGTTGAGAGAAATTACATGCAAATTATGTTAGTATAGTTGCAATTTAGGTCTGCTACCGCAATTGAAAACCATAATATCCTCTATCAAGTAGTATTAACCAATGTTCACTTTGCATGCAGATGGACAAGGCAACTATTTTGGAAGATGCTATAAAACATATGAAGCAACTACAGGAACGAGTGAAGACTTTAGAGGAACAAGTAACCAATAAAAAAGTCGAATCAGCTGTTTTTGTGAAGAGATCTATTCTCTTTGACGAAGATGATAGCTCATCTTGCGACAAAAATTCAGACCAATCACTTCCGAAAATTGAAGCAAGGGTTTCTGGAAAAGACATGCTCATCAGAATCCATTGTGACAAATATTGTGGCCGAACTGCGACCGCAATACTCATCGAATTAGAAAAGCATCACCTCACTGTTCAGAGCAGTTCTACTTTGCCATTTGGAAATAACTATCTTGATATAACAATTGTTGCTCAGGTAAATTTATTCAAATTTGAAGACATGAGTTTATGCTTGTCTTAATTGCATGTTTGGTTCGTTCTTGATGTTTATTTTAAGTTTCTAGTTGGTCCAACTTGTTTCAAAGTGAGTAATGTTTTGGACCAACTTAAAAATTTTAAAACTTAAAGACCAACTTAAAACCTAATTAAAATGATCATAAGAGACCATTTTATGTTCTAGCCTAGTTTTTCTTGTGATGAGTAGAATTCTTTGTTCATGTTGATATATTCTATTTGGCTCGTTAAAAAAAACATAAGAAATCAAACATGCAATTAAGCCTCTATATTTTATCTCGGAAAAATTAGTGACAGATTTTATTTAATTTTCATGGCTAATTTAATTTTTTCTTGCAGATGAATAAAGAATATTGCTTGACAATAAAGGATCTCGTAAGGAGCATAAGTCAGGTTTTGAGGCAGCTCATTTGA
Protein sequence

>MS.gene46329.t1

MIQISSTNYMPEFGLMEDNTLFSDHEYPMDSYAFQFDDMAYFKSFSASPQESTYSSHTNNINNKRIHSESTQNNSFPIESSPGQSVASATPTKLRLKSSSSSSSKIIISFEPNMDARVKKPKTEIGYGENLNFGSVISQGDYYKRENKVAAINRNPIQAQDHVMAERRRREKLSQRFIALSSLLPGLKKMDKATILEDAIKHMKQLQERVKTLEEQVTNKKVESAVFVKRSILFDEDDSSSCDKNSDQSLPKIEARVSGKDMLIRIHCDKYCGRTATAILIELEKHHLTVQSSSTLPFGNNYLDITIVAQMNKEYCLTIKDLVRSISQVLRQLI