AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46330.t1 MTR_4g097940 89.222 334 30 2 1 334 1 328 0.0 607
MS.gene46330.t1 MTR_4g097920 87.126 334 37 2 1 334 1 328 0.0 595
MS.gene46330.t1 MTR_4g097920 86.834 319 36 2 16 334 1 313 0.0 565
MS.gene46330.t1 MTR_5g014640 45.455 352 140 13 1 330 1 322 2.60e-78 243
MS.gene46330.t1 MTR_2g010450 37.960 353 179 14 2 326 5 345 2.59e-53 179
MS.gene46330.t1 MTR_4g092700 42.966 263 140 6 76 334 77 333 1.40e-52 176
MS.gene46330.t1 MTR_8g009020 46.809 188 87 4 154 330 136 321 4.10e-50 170
MS.gene46330.t1 MTR_5g014600 40.784 255 119 9 101 330 86 333 6.92e-48 164
MS.gene46330.t1 MTR_2g104550 47.396 192 94 3 144 330 121 310 5.33e-47 161
MS.gene46330.t1 MTR_0250s0040 46.512 172 88 3 158 326 85 255 2.36e-46 158
MS.gene46330.t1 MTR_6g047570 46.243 173 89 3 157 326 155 326 6.85e-46 159
MS.gene46330.t1 MTR_0246s0020 44.550 211 93 6 125 326 174 369 5.01e-45 158
MS.gene46330.t1 MTR_0011s0210 46.784 171 87 2 159 326 181 350 1.51e-43 154
MS.gene46330.t1 MTR_4g067010 43.062 209 100 5 129 334 127 319 2.52e-43 152
MS.gene46330.t1 MTR_4g009110 41.036 251 114 9 98 330 114 348 4.23e-43 152
MS.gene46330.t1 MTR_4g009540 40.984 244 120 7 98 330 99 329 8.35e-43 151
MS.gene46330.t1 MTR_5g014560 45.556 180 85 5 160 331 130 304 1.28e-42 150
MS.gene46330.t1 MTR_4g066460 42.995 207 109 4 129 330 121 323 1.55e-42 150
MS.gene46330.t1 MTR_0011s0260 46.784 171 87 2 159 326 181 350 1.62e-42 151
MS.gene46330.t1 MTR_5g014520 50.000 170 81 2 160 326 156 324 3.27e-42 149
MS.gene46330.t1 MTR_0246s0020 44.388 196 85 6 125 311 174 354 1.90e-39 143
MS.gene46330.t1 MTR_2g104490 43.085 188 105 2 144 330 120 306 6.37e-39 140
MS.gene46330.t1 MTR_0246s0050 41.989 181 100 2 146 326 136 311 1.03e-38 140
MS.gene46330.t1 MTR_4g098035 41.989 181 100 2 146 326 157 332 1.55e-38 140
MS.gene46330.t1 MTR_8g009010 31.579 323 160 10 22 334 3 274 5.35e-38 138
MS.gene46330.t1 MTR_4g097950 47.059 187 78 6 161 332 70 250 5.83e-38 136
MS.gene46330.t1 MTR_4g009540 40.000 225 111 7 98 311 99 310 3.30e-36 133
MS.gene46330.t1 MTR_4g066380 41.089 202 111 4 129 326 119 316 3.45e-36 133
MS.gene46330.t1 MTR_7g080780 44.134 179 93 2 152 330 143 314 1.18e-35 132
MS.gene46330.t1 MTR_7g080780 44.134 179 93 2 152 330 156 327 1.45e-35 132
MS.gene46330.t1 MTR_2g104560 39.674 184 97 6 154 330 47 223 5.25e-35 127
MS.gene46330.t1 MTR_2g104590 36.813 182 87 3 154 329 62 221 6.87e-34 124
MS.gene46330.t1 MTR_2g104490 41.954 174 99 2 144 316 120 292 1.16e-32 123
MS.gene46330.t1 MTR_8g069740 39.037 187 89 7 135 310 93 265 1.79e-31 119
MS.gene46330.t1 MTR_2g104650 41.622 185 94 6 154 329 87 266 1.24e-30 117
MS.gene46330.t1 MTR_2g104530 37.019 208 111 5 130 330 78 272 5.46e-30 115
MS.gene46330.t1 MTR_2g104500 40.000 180 93 4 157 330 100 270 9.61e-30 115
MS.gene46330.t1 MTR_6g047550 56.944 72 31 0 157 228 169 240 1.21e-21 93.2
MS.gene46330.t1 MTR_7g451650 36.646 161 89 5 166 326 44 191 3.16e-20 87.4
MS.gene46330.t1 MTR_4g009510 36.250 160 92 5 172 330 53 203 3.16e-20 87.8
MS.gene46330.t1 MTR_5g014550 38.168 131 69 4 191 314 54 179 2.59e-19 85.1
MS.gene46330.t1 MTR_4g009420 34.375 160 78 4 172 326 54 191 4.30e-19 84.3
MS.gene46330.t1 MTR_7g451650 36.667 150 82 5 166 315 44 180 8.04e-18 80.5
MS.gene46330.t1 MTR_7g050350 36.496 137 79 3 190 326 1 129 1.01e-17 79.0
MS.gene46330.t1 MTR_7g451650 36.496 137 79 3 190 326 1 129 1.01e-17 79.0
MS.gene46330.t1 MTR_4g009420 34.228 149 71 4 172 315 54 180 1.62e-16 77.4
MS.gene46330.t1 MTR_8g024790 29.557 203 119 8 142 328 270 464 2.50e-16 80.1
MS.gene46330.t1 MTR_8g024770 28.144 167 102 5 142 295 258 419 7.66e-14 72.4
MS.gene46330.t1 MTR_1g072320 50.000 64 30 1 161 224 470 531 8.74e-14 72.4
MS.gene46330.t1 MTR_7g096350 46.250 80 38 2 144 221 341 417 1.45e-13 71.6
MS.gene46330.t1 MTR_8g027495 48.333 60 31 0 157 216 454 513 5.96e-13 70.1
MS.gene46330.t1 MTR_8g067280 31.928 166 95 5 144 295 448 609 1.01e-12 69.3
MS.gene46330.t1 MTR_5g030430 30.909 165 93 5 144 290 479 640 1.24e-12 68.9
MS.gene46330.t1 MTR_7g117670 50.000 56 28 0 161 216 402 457 4.35e-12 67.4
MS.gene46330.t1 MTR_8g098275 41.791 67 39 0 158 224 305 371 1.25e-11 65.9
MS.gene46330.t1 MTR_8g098275 41.791 67 39 0 158 224 398 464 1.25e-11 65.9
MS.gene46330.t1 MTR_8g098275 41.791 67 39 0 158 224 241 307 1.30e-11 65.5
MS.gene46330.t1 MTR_3g498695 32.824 131 74 4 102 232 253 369 3.16e-11 64.7
MS.gene46330.t1 MTR_3g498695 32.824 131 74 4 102 232 253 369 3.36e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46330.t1 AT2G22760 36.585 328 155 11 9 326 6 290 1.65e-52 175
MS.gene46330.t1 AT4G37850 46.798 203 99 5 139 334 128 328 5.23e-50 169
MS.gene46330.t1 AT4G37850 46.798 203 99 5 139 334 128 328 5.23e-50 169
MS.gene46330.t1 AT2G22760 35.897 312 148 10 9 311 6 274 4.78e-47 160
MS.gene46330.t1 AT2G22770 43.694 222 103 6 130 330 98 318 2.50e-42 149
MS.gene46330.t1 AT2G22750 40.909 242 122 6 98 327 66 298 2.80e-41 146
MS.gene46330.t1 AT2G22750 40.909 242 122 6 98 327 94 326 4.32e-41 146
MS.gene46330.t1 AT2G22750 40.909 242 122 6 98 327 90 322 4.52e-41 146
MS.gene46330.t1 AT2G22750 40.909 242 121 7 98 327 66 297 6.74e-40 142
MS.gene46330.t1 AT2G22750 40.909 242 121 7 98 327 94 325 1.07e-39 142
MS.gene46330.t1 AT1G32640 35.897 156 87 6 144 290 438 589 2.14e-16 80.5
MS.gene46330.t1 AT2G46510 47.561 82 40 1 135 216 372 450 2.36e-15 77.4
MS.gene46330.t1 AT5G46760 31.481 162 94 5 144 295 401 555 1.45e-12 68.9
MS.gene46330.t1 AT1G01260 28.947 190 118 5 27 216 316 488 1.77e-12 68.6
MS.gene46330.t1 AT1G01260 28.947 190 118 5 27 216 316 488 1.77e-12 68.6
MS.gene46330.t1 AT1G01260 28.947 190 118 5 27 216 316 488 1.77e-12 68.6
MS.gene46330.t1 AT4G17880 31.447 159 94 5 144 295 402 552 2.50e-12 68.2
MS.gene46330.t1 AT4G09820 27.933 179 105 5 154 330 356 512 6.54e-12 66.6
MS.gene46330.t1 AT4G16430 40.506 79 43 1 142 216 297 375 1.16e-11 65.9
MS.gene46330.t1 AT1G63650 44.068 59 33 0 156 214 400 458 1.44e-11 65.9
MS.gene46330.t1 AT1G63650 44.068 59 33 0 156 214 400 458 1.44e-11 65.9
MS.gene46330.t1 AT1G63650 44.068 59 33 0 156 214 400 458 1.44e-11 65.9
MS.gene46330.t1 AT1G12860 29.518 166 101 6 162 315 268 429 2.31e-11 65.1
MS.gene46330.t1 AT4G29930 39.394 66 40 0 162 227 55 120 5.86e-11 61.2
MS.gene46330.t1 AT4G29930 39.394 66 40 0 162 227 55 120 6.36e-11 62.0
MS.gene46330.t1 AT4G29930 39.394 66 40 0 162 227 55 120 6.74e-11 62.0
MS.gene46330.t1 AT4G29930 39.394 66 40 0 162 227 55 120 7.48e-11 62.4
MS.gene46330.t1 AT4G29930 39.394 66 40 0 162 227 55 120 7.48e-11 62.4
MS.gene46330.t1 AT4G29930 39.394 66 40 0 162 227 55 120 7.56e-11 61.6
MS.gene46330.t1 AT4G29930 39.394 66 40 0 162 227 55 120 8.74e-11 62.0
MS.gene46330.t1 AT5G46830 32.143 140 85 5 161 295 343 477 9.26e-11 63.2

Find 56 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATCAAATGAAATGATTT+TGG 0.105789 8.4:-24610226 None:intergenic
TGCATTTCAGTTTGATGATA+TGG 0.178721 8.4:+24610026 MS.gene46330:CDS
GATGGACAAGGCAACTATTT+TGG 0.186609 8.4:+24610674 MS.gene46330:intron
TACGGAGAAAACTTGAATTT+TGG 0.226888 8.4:+24610309 MS.gene46330:CDS
TTTGAATTAACAGGGATTAA+TGG 0.241351 8.4:+24609957 MS.gene46330:intron
GCTCTTTCCTCCATTCTTCC+TGG 0.259749 8.4:+24610465 MS.gene46330:CDS
AAAATCGAAGCAAGAGTTTC+TGG 0.260282 8.4:+24610861 MS.gene46330:CDS
CATTCTTCCTGGACTGAAAA+AGG 0.273836 8.4:+24610476 MS.gene46330:CDS
GGCCGCAATACTCAACTTAT+TGG 0.296853 8.4:+24610935 MS.gene46330:CDS
GGAATATTGCTTAACAATAA+AGG 0.354244 8.4:+24611150 MS.gene46330:CDS
TGTAAATAGAAACCCTATTC+AGG 0.354615 8.4:+24610383 MS.gene46330:CDS
TGTTGTGTACTTACGAATTC+AGG 0.356450 8.4:-24609836 None:intergenic
ACATGATCTTGAGCCTGAAT+AGG 0.366395 8.4:-24610396 None:intergenic
CATGATCTTGAGCCTGAATA+GGG 0.371001 8.4:-24610395 None:intergenic
TCGCTTGTTGTTGATGTTGT+TGG 0.394714 8.4:-24610103 None:intergenic
GGAACAAGTAGCCGATAAAA+AGG 0.423518 8.4:+24610749 MS.gene46330:CDS
TGATATAACCATTGTTGCTC+AGG 0.429067 8.4:+24611016 MS.gene46330:CDS
TACGAATTCAGGCATGTACT+TGG 0.466492 8.4:-24609825 None:intergenic
TCAAGATAGTTATTTCCAAA+TGG 0.476177 8.4:-24610996 None:intergenic
AGGAAAGAGCAATGAATCTC+TGG 0.478665 8.4:-24610452 None:intergenic
TGTTCTGTGTGCTTTCAGAA+TGG 0.481082 8.4:-24610128 None:intergenic
TCCTTGAGTACTTTAGTTGG+CGG 0.485847 8.4:-24610198 None:intergenic
AAGAAGCTTAAAACCGAGAT+CGG 0.489570 8.4:+24610285 MS.gene46330:CDS
GAATCCTTGAGTACTTTAGT+TGG 0.495266 8.4:-24610201 None:intergenic
TAATGATTATGAGTACCCTA+TGG 0.498020 8.4:+24609996 MS.gene46330:CDS
AGGAATAAGTACTCTCTTGT+GGG 0.507070 8.4:-24610074 None:intergenic
GCTGAGACAACAGATTGATC+TGG 0.515599 8.4:-24610171 None:intergenic
CTTAAAACCGAGATCGGGTA+CGG 0.516391 8.4:+24610291 MS.gene46330:CDS
GGAACGAGTGAAGACATTAG+AGG 0.517587 8.4:+24610728 MS.gene46330:CDS
TCAGGCTCAAGATCATGTTA+TGG 0.518678 8.4:+24610401 MS.gene46330:CDS
TCTATTCTCTTCGACGATGA+TGG 0.521622 8.4:+24610798 MS.gene46330:CDS
TGAAATGCAGATGAATCCAT+AGG 0.526233 8.4:-24610012 None:intergenic
GATTGATCTGGACTTTCAGT+GGG 0.534032 8.4:-24610159 None:intergenic
TCTCGTAAGAAGCATAAGTC+AGG 0.535454 8.4:+24611174 MS.gene46330:CDS
AGATTGATCTGGACTTTCAG+TGG 0.535461 8.4:-24610160 None:intergenic
GTTGATGTTGTTGGTATGAG+AGG 0.543066 8.4:-24610094 None:intergenic
GAGGAATAAGTACTCTCTTG+TGG 0.546666 8.4:-24610075 None:intergenic
AGAAGCTTAAAACCGAGATC+GGG 0.550283 8.4:+24610286 MS.gene46330:CDS
TTTGGAAGTGTGATATCTCA+AGG 0.551675 8.4:+24610327 MS.gene46330:CDS
AAAACATATGAAGCAACTAA+AGG 0.561488 8.4:+24610707 MS.gene46330:CDS
TTCCAATAAGTTGAGTATTG+CGG 0.565334 8.4:-24610937 None:intergenic
TGAGTATTGCGGCCGCAGAT+CGG 0.574788 8.4:-24610926 None:intergenic
GAAATGCAGATGAATCCATA+GGG 0.600361 8.4:-24610011 None:intergenic
ACCGCCAACTAAAGTACTCA+AGG 0.600887 8.4:+24610197 MS.gene46330:CDS
GAATTAACAGGGATTAATGG+AGG 0.608513 8.4:+24609960 MS.gene46330:intron
GACATGCTCATCAGAATCCA+CGG 0.608624 8.4:+24610888 MS.gene46330:CDS
TTATTATAAACGAGAGAACA+AGG 0.617033 8.4:+24610353 MS.gene46330:CDS
GGCCGCAATGTTTATCACCG+TGG 0.620508 8.4:-24610905 None:intergenic
TAAACATTGCGGCCGATCTG+CGG 0.633204 8.4:+24610914 MS.gene46330:CDS
GGAATAAGTACTCTCTTGTG+GGG 0.633544 8.4:-24610073 None:intergenic
TTTCAGTCCAGGAAGAATGG+AGG 0.639981 8.4:-24610472 None:intergenic
ACTTTGCATGCAGATGGACA+AGG 0.646531 8.4:+24610662 MS.gene46330:intron
TATGGCCGAAAGAAGACGAA+GGG 0.657033 8.4:+24610419 MS.gene46330:CDS
TTATGGCCGAAAGAAGACGA+AGG 0.705183 8.4:+24610418 MS.gene46330:CDS
ATCCACGGTGATAAACATTG+CGG 0.719186 8.4:+24610903 MS.gene46330:CDS
ATTGATCTGGACTTTCAGTG+GGG 0.733516 8.4:-24610158 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAATTTACATACTAATT+AGG + chr8.4:24610578-24610597 MS.gene46330:intron 15.0%
!!! ATTATCAAATGAAATGATTT+TGG - chr8.4:24610229-24610248 None:intergenic 15.0%
!!! TTATCAAATGAAATGATTTT+GGG - chr8.4:24610228-24610247 None:intergenic 15.0%
!! AAATATTATGCATTTGAATG+TGG + chr8.4:24610521-24610540 MS.gene46330:intron 20.0%
!! AATATTATGCATTTGAATGT+GGG + chr8.4:24610522-24610541 MS.gene46330:intron 20.0%
!! TAATTCAAAGAAAAAGAGTA+AGG - chr8.4:24609946-24609965 None:intergenic 20.0%
!!! TCTTTTTCTTTGAATTAACA+GGG + chr8.4:24609949-24609968 MS.gene46330:intron 20.0%
! AAAACATATGAAGCAACTAA+AGG + chr8.4:24610707-24610726 MS.gene46330:CDS 25.0%
! GGAATATTGCTTAACAATAA+AGG + chr8.4:24611150-24611169 MS.gene46330:CDS 25.0%
! TGGTTAATATTACTTGATAG+AGG - chr8.4:24610636-24610655 None:intergenic 25.0%
! TTATTATAAACGAGAGAACA+AGG + chr8.4:24610353-24610372 MS.gene46330:CDS 25.0%
! TTTGAATTAACAGGGATTAA+TGG + chr8.4:24609957-24609976 MS.gene46330:intron 25.0%
!! CTCTTTTTCTTTGAATTAAC+AGG + chr8.4:24609948-24609967 MS.gene46330:intron 25.0%
!! TCAAGATAGTTATTTCCAAA+TGG - chr8.4:24610999-24611018 None:intergenic 25.0%
!! TTCTCAACAATTTTACAACA+TGG + chr8.4:24610251-24610270 MS.gene46330:CDS 25.0%
!!! AGTAGTTCTATTTTACCATT+TGG + chr8.4:24610981-24611000 MS.gene46330:CDS 25.0%
!!! TTTTTTCTTGCAGATGAATA+AGG + chr8.4:24611129-24611148 MS.gene46330:intron 25.0%
TAATGATTATGAGTACCCTA+TGG + chr8.4:24609996-24610015 MS.gene46330:CDS 30.0%
TAATTGAGCTGAATTAGTGA+CGG + chr8.4:24611063-24611082 MS.gene46330:intron 30.0%
TGTAAATAGAAACCCTATTC+AGG + chr8.4:24610383-24610402 MS.gene46330:CDS 30.0%
! AAACTCTTGCTTCGATTTTT+GGG - chr8.4:24610860-24610879 None:intergenic 30.0%
! AAATTTTACCTGAGCAACAA+TGG - chr8.4:24611027-24611046 None:intergenic 30.0%
! ATTTTACAACATGGATGCAA+AGG + chr8.4:24610260-24610279 MS.gene46330:CDS 30.0%
! TACGGAGAAAACTTGAATTT+TGG + chr8.4:24610309-24610328 MS.gene46330:CDS 30.0%
! TGCATTTCAGTTTGATGATA+TGG + chr8.4:24610026-24610045 MS.gene46330:CDS 30.0%
! TTCCAATAAGTTGAGTATTG+CGG - chr8.4:24610940-24610959 None:intergenic 30.0%
!! GATATCATCGTTTTGAATTG+CGG - chr8.4:24610614-24610633 None:intergenic 30.0%
AAAATCGAAGCAAGAGTTTC+TGG + chr8.4:24610861-24610880 MS.gene46330:CDS 35.0%
AAGAAGCTTAAAACCGAGAT+CGG + chr8.4:24610285-24610304 MS.gene46330:CDS 35.0%
AGGAATAAGTACTCTCTTGT+GGG - chr8.4:24610077-24610096 None:intergenic 35.0%
GAAATGCAGATGAATCCATA+GGG - chr8.4:24610014-24610033 None:intergenic 35.0%
GAATCCTTGAGTACTTTAGT+TGG - chr8.4:24610204-24610223 None:intergenic 35.0%
GAATTAACAGGGATTAATGG+AGG + chr8.4:24609960-24609979 MS.gene46330:intron 35.0%
TGAAATGCAGATGAATCCAT+AGG - chr8.4:24610015-24610034 None:intergenic 35.0%
TGATATAACCATTGTTGCTC+AGG + chr8.4:24611016-24611035 MS.gene46330:CDS 35.0%
TGTTGTGTACTTACGAATTC+AGG - chr8.4:24609839-24609858 None:intergenic 35.0%
! GAAACTCTTGCTTCGATTTT+TGG - chr8.4:24610861-24610880 None:intergenic 35.0%
! TTTGGAAGTGTGATATCTCA+AGG + chr8.4:24610327-24610346 MS.gene46330:CDS 35.0%
!!! TATAGTACCTTTTTCAGTCC+AGG - chr8.4:24610486-24610505 None:intergenic 35.0%
!!! TGCTGATTCGACCTTTTTAT+CGG - chr8.4:24610763-24610782 None:intergenic 35.0%
ACATGATCTTGAGCCTGAAT+AGG - chr8.4:24610399-24610418 None:intergenic 40.0%
AGAAGCTTAAAACCGAGATC+GGG + chr8.4:24610286-24610305 MS.gene46330:CDS 40.0%
AGATTGATCTGGACTTTCAG+TGG - chr8.4:24610163-24610182 None:intergenic 40.0%
AGGAAAGAGCAATGAATCTC+TGG - chr8.4:24610455-24610474 None:intergenic 40.0%
ATCCACGGTGATAAACATTG+CGG + chr8.4:24610903-24610922 MS.gene46330:CDS 40.0%
ATGTTCACTTTGCATGCAGA+TGG + chr8.4:24610656-24610675 MS.gene46330:intron 40.0%
ATTGATCTGGACTTTCAGTG+GGG - chr8.4:24610161-24610180 None:intergenic 40.0%
CATGATCTTGAGCCTGAATA+GGG - chr8.4:24610398-24610417 None:intergenic 40.0%
CATTCTTCCTGGACTGAAAA+AGG + chr8.4:24610476-24610495 MS.gene46330:CDS 40.0%
GAGGAATAAGTACTCTCTTG+TGG - chr8.4:24610078-24610097 None:intergenic 40.0%
GATTGATCTGGACTTTCAGT+GGG - chr8.4:24610162-24610181 None:intergenic 40.0%
GGAACAAGTAGCCGATAAAA+AGG + chr8.4:24610749-24610768 MS.gene46330:CDS 40.0%
GGAATAAGTACTCTCTTGTG+GGG - chr8.4:24610076-24610095 None:intergenic 40.0%
GTTGATGTTGTTGGTATGAG+AGG - chr8.4:24610097-24610116 None:intergenic 40.0%
TACGAATTCAGGCATGTACT+TGG - chr8.4:24609828-24609847 None:intergenic 40.0%
TCAGGCTCAAGATCATGTTA+TGG + chr8.4:24610401-24610420 MS.gene46330:CDS 40.0%
TCCTTGAGTACTTTAGTTGG+CGG - chr8.4:24610201-24610220 None:intergenic 40.0%
TCTATTCTCTTCGACGATGA+TGG + chr8.4:24610798-24610817 MS.gene46330:CDS 40.0%
TCTGCATGCAAAGTGAACAT+TGG - chr8.4:24610656-24610675 None:intergenic 40.0%
TGTTCTGTGTGCTTTCAGAA+TGG - chr8.4:24610131-24610150 None:intergenic 40.0%
! CTTTTCCCTTCGTCTTCTTT+CGG - chr8.4:24610427-24610446 None:intergenic 40.0%
! GAAGCATAAGTCAGGTTTTG+AGG + chr8.4:24611182-24611201 MS.gene46330:CDS 40.0%
! GATGGACAAGGCAACTATTT+TGG + chr8.4:24610674-24610693 MS.gene46330:intron 40.0%
! TCTCGTAAGAAGCATAAGTC+AGG + chr8.4:24611174-24611193 MS.gene46330:CDS 40.0%
!! TCGCTTGTTGTTGATGTTGT+TGG - chr8.4:24610106-24610125 None:intergenic 40.0%
!!! CTTTTTCAGTCCAGGAAGAA+TGG - chr8.4:24610478-24610497 None:intergenic 40.0%
ACTTTGCATGCAGATGGACA+AGG + chr8.4:24610662-24610681 MS.gene46330:intron 45.0%
CTTAAAACCGAGATCGGGTA+CGG + chr8.4:24610291-24610310 MS.gene46330:CDS 45.0%
GACATGCTCATCAGAATCCA+CGG + chr8.4:24610888-24610907 MS.gene46330:CDS 45.0%
GCTGAGACAACAGATTGATC+TGG - chr8.4:24610174-24610193 None:intergenic 45.0%
GGAACGAGTGAAGACATTAG+AGG + chr8.4:24610728-24610747 MS.gene46330:CDS 45.0%
GGCCGCAATACTCAACTTAT+TGG + chr8.4:24610935-24610954 MS.gene46330:CDS 45.0%
TATGGCCGAAAGAAGACGAA+GGG + chr8.4:24610419-24610438 MS.gene46330:CDS 45.0%
TTATGGCCGAAAGAAGACGA+AGG + chr8.4:24610418-24610437 MS.gene46330:CDS 45.0%
TTTCAGTCCAGGAAGAATGG+AGG - chr8.4:24610475-24610494 None:intergenic 45.0%
! ACCGCCAACTAAAGTACTCA+AGG + chr8.4:24610197-24610216 MS.gene46330:CDS 45.0%
GCTCTTTCCTCCATTCTTCC+TGG + chr8.4:24610465-24610484 MS.gene46330:CDS 50.0%
TAAACATTGCGGCCGATCTG+CGG + chr8.4:24610914-24610933 MS.gene46330:CDS 50.0%
! GTTTTCTCCGTACCCGATCT+CGG - chr8.4:24610301-24610320 None:intergenic 50.0%
GGCCGCAATGTTTATCACCG+TGG - chr8.4:24610908-24610927 None:intergenic 55.0%
! TGAGTATTGCGGCCGCAGAT+CGG - chr8.4:24610929-24610948 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 24609806 24611216 24609806 ID=MS.gene46330
chr8.4 mRNA 24609806 24611216 24609806 ID=MS.gene46330.t1;Parent=MS.gene46330
chr8.4 exon 24609806 24609844 24609806 ID=MS.gene46330.t1.exon1;Parent=MS.gene46330.t1
chr8.4 CDS 24609806 24609844 24609806 ID=cds.MS.gene46330.t1;Parent=MS.gene46330.t1
chr8.4 exon 24609970 24610497 24609970 ID=MS.gene46330.t1.exon2;Parent=MS.gene46330.t1
chr8.4 CDS 24609970 24610497 24609970 ID=cds.MS.gene46330.t1;Parent=MS.gene46330.t1
chr8.4 exon 24610675 24611037 24610675 ID=MS.gene46330.t1.exon3;Parent=MS.gene46330.t1
chr8.4 CDS 24610675 24611037 24610675 ID=cds.MS.gene46330.t1;Parent=MS.gene46330.t1
chr8.4 exon 24611142 24611216 24611142 ID=MS.gene46330.t1.exon4;Parent=MS.gene46330.t1
chr8.4 CDS 24611142 24611216 24611142 ID=cds.MS.gene46330.t1;Parent=MS.gene46330.t1
Gene Sequence

>MS.gene46330

ATGATTCAAATTTCGTCTACCAAGTACATGCCTGAATTCGTAAGTACACAACACACTAAGTGCATATTTAGATTGTTTACGAGATTGATAGAATCACGATGAACTAGAGTAATTTTGACAAATTCAAAATTCTTTTACCTTACTCTTTTTCTTTGAATTAACAGGGATTAATGGAGGACACTACTTTGTTTAATGATTATGAGTACCCTATGGATTCATCTGCATTTCAGTTTGATGATATGGCATACTTGAAGTCTTTCTCAGCATCCCCACAAGAGAGTACTTATTCCTCTCATACCAACAACATCAACAACAAGCGAATCCATTCTGAAAGCACACAGAACAGTTCTTTCCCCACTGAAAGTCCAGATCAATCTGTTGTCTCAGCAACACCGCCAACTAAAGTACTCAAGGATTCTCCCAAAATCATTTCATTTGATAATTCTTCTCAACAATTTTACAACATGGATGCAAAGGTTAAGAAGCTTAAAACCGAGATCGGGTACGGAGAAAACTTGAATTTTGGAAGTGTGATATCTCAAGGTGATTATTATAAACGAGAGAACAAGGTTGCTGCTGTAAATAGAAACCCTATTCAGGCTCAAGATCATGTTATGGCCGAAAGAAGACGAAGGGAAAAGCTTAGCCAGAGATTCATTGCTCTTTCCTCCATTCTTCCTGGACTGAAAAAGGTACTATATAACATATATTGTATAAATATTATGCATTTGAATGTGGGTAGTTGTGTTGCAAATTGCAATCTTTAATATTGAGAAAATTTACATACTAATTAGGTTAATGCAGACCGCAATTCAAAACGATGATATCCTCTATCAAGTAATATTAACCAATGTTCACTTTGCATGCAGATGGACAAGGCAACTATTTTGGAAGATGCTATAAAACATATGAAGCAACTAAAGGAACGAGTGAAGACATTAGAGGAACAAGTAGCCGATAAAAAGGTCGAATCAGCAGTCTTTGTGAAGAGATCTATTCTCTTCGACGATGATGGCAGCTCTTCTTGCGACGACAACTCAGACAAATCACTCCCAAAAATCGAAGCAAGAGTTTCTGGAAAAGACATGCTCATCAGAATCCACGGTGATAAACATTGCGGCCGATCTGCGGCCGCAATACTCAACTTATTGGAAAAGCATCATCTCACTGTTCAAAGTAGTTCTATTTTACCATTTGGAAATAACTATCTTGATATAACCATTGTTGCTCAGGTAAAATTTATTCATATTTCAAACATAATTGAGCTGAATTAGTGACGGATTTTTTTTATTTTCTTCTCTAATATTCGTCGAAAATTTAATTTTTTTTCTTGCAGATGAATAAGGAATATTGCTTAACAATAAAGGATCTCGTAAGAAGCATAAGTCAGGTTTTGAGGCAGCATATTTGA
Protein sequence

>MS.gene46330.t1

MIQISSTKYMPEFGLMEDTTLFNDYEYPMDSSAFQFDDMAYLKSFSASPQESTYSSHTNNINNKRIHSESTQNSSFPTESPDQSVVSATPPTKVLKDSPKIISFDNSSQQFYNMDAKVKKLKTEIGYGENLNFGSVISQGDYYKRENKVAAVNRNPIQAQDHVMAERRRREKLSQRFIALSSILPGLKKMDKATILEDAIKHMKQLKERVKTLEEQVADKKVESAVFVKRSILFDDDGSSSCDDNSDKSLPKIEARVSGKDMLIRIHGDKHCGRSAAAILNLLEKHHLTVQSSSILPFGNNYLDITIVAQMNKEYCLTIKDLVRSISQVLRQHI