Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46335.t1 | XP_013457519.1 | 83.6 | 366 | 30 | 4 | 1 | 360 | 1 | 342 | 1.50E-151 | 545.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46335.t1 | Q1PF16 | 40.3 | 186 | 100 | 3 | 179 | 353 | 108 | 293 | 8.0e-29 | 129.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46335.t1 | A0A072V0A3 | 83.6 | 366 | 30 | 4 | 1 | 360 | 1 | 342 | 1.1e-151 | 545.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene46335.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46335.t1 | MTR_4g098035 | 83.607 | 366 | 30 | 4 | 1 | 360 | 1 | 342 | 0.0 | 598 |
| MS.gene46335.t1 | MTR_0246s0050 | 83.188 | 345 | 28 | 4 | 22 | 360 | 1 | 321 | 0.0 | 560 |
| MS.gene46335.t1 | MTR_0246s0020 | 53.418 | 395 | 133 | 15 | 1 | 360 | 1 | 379 | 2.09e-110 | 327 |
| MS.gene46335.t1 | MTR_6g047570 | 50.526 | 380 | 124 | 16 | 1 | 360 | 1 | 336 | 8.42e-99 | 296 |
| MS.gene46335.t1 | MTR_0246s0020 | 50.646 | 387 | 138 | 16 | 1 | 352 | 1 | 369 | 2.63e-95 | 288 |
| MS.gene46335.t1 | MTR_0011s0210 | 47.895 | 380 | 158 | 14 | 1 | 360 | 1 | 360 | 1.65e-92 | 281 |
| MS.gene46335.t1 | MTR_0011s0260 | 48.285 | 379 | 156 | 14 | 1 | 359 | 1 | 359 | 1.86e-92 | 281 |
| MS.gene46335.t1 | MTR_4g066380 | 46.685 | 362 | 153 | 9 | 1 | 359 | 1 | 325 | 2.49e-89 | 272 |
| MS.gene46335.t1 | MTR_4g066460 | 48.219 | 365 | 148 | 12 | 1 | 360 | 1 | 329 | 6.13e-86 | 263 |
| MS.gene46335.t1 | MTR_4g067010 | 46.006 | 363 | 147 | 13 | 1 | 358 | 1 | 319 | 4.06e-84 | 258 |
| MS.gene46335.t1 | MTR_0250s0040 | 50.741 | 270 | 93 | 10 | 101 | 360 | 26 | 265 | 1.15e-69 | 219 |
| MS.gene46335.t1 | MTR_5g014520 | 42.857 | 350 | 157 | 10 | 17 | 359 | 20 | 333 | 3.24e-61 | 199 |
| MS.gene46335.t1 | MTR_6g047550 | 50.554 | 271 | 95 | 13 | 1 | 260 | 1 | 243 | 1.09e-59 | 194 |
| MS.gene46335.t1 | MTR_5g014560 | 51.724 | 203 | 84 | 5 | 170 | 359 | 106 | 307 | 2.99e-55 | 183 |
| MS.gene46335.t1 | MTR_2g010450 | 37.049 | 305 | 158 | 8 | 77 | 358 | 60 | 353 | 3.54e-46 | 161 |
| MS.gene46335.t1 | MTR_5g014600 | 37.647 | 255 | 132 | 5 | 124 | 355 | 84 | 334 | 7.96e-43 | 152 |
| MS.gene46335.t1 | MTR_4g009540 | 38.672 | 256 | 127 | 7 | 120 | 356 | 87 | 331 | 3.13e-42 | 150 |
| MS.gene46335.t1 | MTR_4g097940 | 41.530 | 183 | 98 | 3 | 175 | 350 | 140 | 320 | 3.34e-38 | 139 |
| MS.gene46335.t1 | MTR_4g097920 | 40.984 | 183 | 99 | 3 | 175 | 350 | 125 | 305 | 4.56e-38 | 139 |
| MS.gene46335.t1 | MTR_4g097920 | 40.984 | 183 | 99 | 3 | 175 | 350 | 140 | 320 | 6.86e-38 | 139 |
| MS.gene46335.t1 | MTR_4g092700 | 39.896 | 193 | 107 | 2 | 174 | 358 | 142 | 333 | 5.08e-37 | 136 |
| MS.gene46335.t1 | MTR_5g014640 | 31.973 | 294 | 178 | 6 | 81 | 355 | 33 | 323 | 1.76e-36 | 135 |
| MS.gene46335.t1 | MTR_4g009110 | 35.433 | 254 | 142 | 6 | 120 | 356 | 102 | 350 | 1.05e-35 | 133 |
| MS.gene46335.t1 | MTR_4g097950 | 35.659 | 258 | 126 | 4 | 123 | 357 | 11 | 251 | 2.53e-35 | 130 |
| MS.gene46335.t1 | MTR_4g009540 | 38.298 | 235 | 115 | 7 | 120 | 335 | 87 | 310 | 3.22e-35 | 131 |
| MS.gene46335.t1 | MTR_8g009020 | 35.909 | 220 | 117 | 4 | 148 | 351 | 107 | 318 | 4.16e-35 | 131 |
| MS.gene46335.t1 | MTR_2g104490 | 36.744 | 215 | 117 | 6 | 146 | 350 | 97 | 302 | 4.18e-33 | 125 |
| MS.gene46335.t1 | MTR_2g104550 | 32.411 | 253 | 149 | 6 | 116 | 359 | 76 | 315 | 1.25e-32 | 124 |
| MS.gene46335.t1 | MTR_2g104560 | 36.667 | 180 | 109 | 1 | 183 | 357 | 47 | 226 | 2.44e-32 | 121 |
| MS.gene46335.t1 | MTR_7g080780 | 29.514 | 288 | 182 | 6 | 76 | 356 | 56 | 329 | 5.08e-31 | 120 |
| MS.gene46335.t1 | MTR_7g080780 | 29.474 | 285 | 180 | 6 | 74 | 351 | 41 | 311 | 5.57e-31 | 120 |
| MS.gene46335.t1 | MTR_2g104500 | 35.023 | 217 | 119 | 6 | 155 | 356 | 63 | 272 | 8.20e-28 | 110 |
| MS.gene46335.t1 | MTR_8g009010 | 31.395 | 258 | 127 | 7 | 103 | 351 | 51 | 267 | 1.58e-27 | 110 |
| MS.gene46335.t1 | MTR_2g104490 | 35.500 | 200 | 110 | 6 | 146 | 335 | 97 | 287 | 9.60e-27 | 108 |
| MS.gene46335.t1 | MTR_2g104650 | 33.036 | 224 | 124 | 7 | 147 | 354 | 54 | 267 | 1.44e-26 | 107 |
| MS.gene46335.t1 | MTR_2g104530 | 31.905 | 210 | 128 | 4 | 155 | 351 | 62 | 269 | 3.24e-25 | 103 |
| MS.gene46335.t1 | MTR_4g009510 | 38.411 | 151 | 88 | 3 | 204 | 353 | 56 | 202 | 4.80e-25 | 101 |
| MS.gene46335.t1 | MTR_8g069740 | 34.731 | 167 | 96 | 3 | 179 | 334 | 101 | 265 | 3.50e-24 | 100 |
| MS.gene46335.t1 | MTR_4g009420 | 39.855 | 138 | 72 | 2 | 216 | 353 | 68 | 194 | 1.26e-23 | 97.1 |
| MS.gene46335.t1 | MTR_7g451650 | 38.849 | 139 | 80 | 3 | 216 | 353 | 60 | 194 | 8.81e-23 | 94.7 |
| MS.gene46335.t1 | MTR_2g104590 | 34.807 | 181 | 97 | 7 | 179 | 354 | 58 | 222 | 9.27e-22 | 92.8 |
| MS.gene46335.t1 | MTR_7g050350 | 37.778 | 135 | 79 | 3 | 220 | 353 | 2 | 132 | 2.27e-21 | 89.4 |
| MS.gene46335.t1 | MTR_7g451650 | 37.778 | 135 | 79 | 3 | 220 | 353 | 2 | 132 | 2.27e-21 | 89.4 |
| MS.gene46335.t1 | MTR_5g014550 | 43.443 | 122 | 60 | 2 | 220 | 333 | 54 | 174 | 1.01e-19 | 86.3 |
| MS.gene46335.t1 | MTR_4g009420 | 37.398 | 123 | 66 | 2 | 213 | 335 | 65 | 176 | 2.10e-16 | 77.4 |
| MS.gene46335.t1 | MTR_7g451650 | 37.190 | 121 | 71 | 3 | 216 | 335 | 60 | 176 | 6.63e-16 | 75.5 |
| MS.gene46335.t1 | MTR_7g117670 | 31.373 | 153 | 95 | 4 | 190 | 337 | 402 | 549 | 2.19e-14 | 74.7 |
| MS.gene46335.t1 | MTR_1g072320 | 30.282 | 142 | 84 | 2 | 190 | 316 | 470 | 611 | 1.30e-13 | 72.4 |
| MS.gene46335.t1 | MTR_3g498695 | 27.320 | 194 | 122 | 4 | 165 | 341 | 274 | 465 | 2.17e-13 | 71.6 |
| MS.gene46335.t1 | MTR_3g498695 | 26.289 | 194 | 125 | 3 | 165 | 341 | 274 | 466 | 2.90e-13 | 71.2 |
| MS.gene46335.t1 | MTR_8g067280 | 30.070 | 143 | 82 | 2 | 190 | 314 | 462 | 604 | 3.29e-12 | 68.2 |
| MS.gene46335.t1 | MTR_8g027495 | 30.061 | 163 | 102 | 5 | 190 | 347 | 458 | 613 | 4.78e-12 | 67.8 |
| MS.gene46335.t1 | MTR_8g024790 | 30.882 | 136 | 78 | 6 | 190 | 312 | 291 | 423 | 1.33e-11 | 65.9 |
| MS.gene46335.t1 | MTR_5g030430 | 27.684 | 177 | 94 | 5 | 166 | 314 | 465 | 635 | 7.52e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46335.t1 | AT2G22760 | 40.000 | 190 | 101 | 4 | 178 | 355 | 107 | 295 | 2.28e-38 | 139 |
| MS.gene46335.t1 | AT4G37850 | 36.400 | 250 | 136 | 7 | 123 | 358 | 88 | 328 | 3.70e-36 | 134 |
| MS.gene46335.t1 | AT4G37850 | 36.400 | 250 | 136 | 7 | 123 | 358 | 88 | 328 | 3.70e-36 | 134 |
| MS.gene46335.t1 | AT2G22770 | 36.923 | 195 | 101 | 2 | 181 | 353 | 123 | 317 | 3.54e-35 | 131 |
| MS.gene46335.t1 | AT2G22760 | 40.237 | 169 | 89 | 3 | 178 | 335 | 107 | 274 | 2.79e-33 | 125 |
| MS.gene46335.t1 | AT2G22750 | 37.436 | 195 | 108 | 4 | 176 | 357 | 111 | 304 | 1.48e-29 | 115 |
| MS.gene46335.t1 | AT2G22750 | 37.436 | 195 | 108 | 4 | 176 | 357 | 135 | 328 | 2.12e-29 | 115 |
| MS.gene46335.t1 | AT2G22750 | 37.436 | 195 | 108 | 4 | 176 | 357 | 139 | 332 | 2.23e-29 | 116 |
| MS.gene46335.t1 | AT2G22750 | 37.436 | 195 | 107 | 5 | 176 | 357 | 111 | 303 | 2.56e-28 | 112 |
| MS.gene46335.t1 | AT2G22750 | 37.436 | 195 | 107 | 5 | 176 | 357 | 139 | 331 | 2.95e-28 | 113 |
| MS.gene46335.t1 | AT5G46760 | 29.834 | 181 | 93 | 7 | 190 | 339 | 415 | 592 | 3.89e-14 | 73.9 |
| MS.gene46335.t1 | AT2G46510 | 48.571 | 70 | 34 | 1 | 190 | 259 | 395 | 462 | 4.97e-13 | 70.5 |
| MS.gene46335.t1 | AT4G09820 | 33.333 | 114 | 63 | 2 | 191 | 304 | 364 | 464 | 9.86e-13 | 69.7 |
| MS.gene46335.t1 | AT1G32640 | 29.323 | 133 | 86 | 2 | 190 | 314 | 452 | 584 | 4.92e-12 | 67.8 |
| MS.gene46335.t1 | AT4G17880 | 30.263 | 152 | 78 | 4 | 190 | 320 | 416 | 560 | 7.32e-12 | 67.0 |
| MS.gene46335.t1 | AT1G01260 | 28.800 | 125 | 74 | 2 | 169 | 293 | 412 | 521 | 9.34e-12 | 66.6 |
| MS.gene46335.t1 | AT1G01260 | 28.800 | 125 | 74 | 2 | 169 | 293 | 412 | 521 | 9.34e-12 | 66.6 |
| MS.gene46335.t1 | AT1G01260 | 28.800 | 125 | 74 | 2 | 169 | 293 | 412 | 521 | 9.34e-12 | 66.6 |
| MS.gene46335.t1 | AT1G12860 | 29.655 | 145 | 89 | 3 | 191 | 322 | 268 | 412 | 1.18e-11 | 66.2 |
| MS.gene46335.t1 | AT1G12860 | 29.655 | 145 | 89 | 3 | 191 | 322 | 268 | 412 | 1.62e-11 | 65.9 |
| MS.gene46335.t1 | AT4G16430 | 30.675 | 163 | 96 | 5 | 100 | 254 | 231 | 384 | 7.48e-11 | 63.5 |
Find 56 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGTGTCATTGCCCAATT+TGG | 0.159846 | 8.4:+24542454 | MS.gene46335:CDS |
| CAAACGTGTGTTATCCAAAT+TGG | 0.209287 | 8.4:-24542468 | None:intergenic |
| CACTTTCAGTTTCACAATAA+TGG | 0.233875 | 8.4:-24543133 | None:intergenic |
| CCAAACCCAACAGATTTATA+CGG | 0.283498 | 8.4:+24542404 | MS.gene46335:CDS |
| CAGCACCTTGTTATCTGATT+TGG | 0.287670 | 8.4:+24541662 | MS.gene46335:CDS |
| CGTATAAATCTGTTGGGTTT+GGG | 0.304768 | 8.4:-24542403 | None:intergenic |
| CTTCTTACCTTCTTTAGGTC+AGG | 0.313344 | 8.4:-24542650 | None:intergenic |
| AGTTACTTCTTACCTTCTTT+AGG | 0.329290 | 8.4:-24542655 | None:intergenic |
| CCGTATAAATCTGTTGGGTT+TGG | 0.355612 | 8.4:-24542404 | None:intergenic |
| GGCTAGTGCCATTGCCTTTG+AGG | 0.361619 | 8.4:+24542166 | MS.gene46335:CDS |
| ATGCTGCCATGCGTAGATTC+TGG | 0.364951 | 8.4:-24546527 | None:intergenic |
| AACGCTCTTTAAGCTCTTTG+AGG | 0.388426 | 8.4:-24543040 | None:intergenic |
| TTGGTGATGCTACTGCTATC+AGG | 0.398588 | 8.4:+24543156 | MS.gene46335:CDS |
| TGGTGGAAATACATTGTTGT+AGG | 0.439706 | 8.4:-24542202 | None:intergenic |
| AGGGTAGAAGCAAAAGTGTC+AGG | 0.446583 | 8.4:+24543176 | MS.gene46335:CDS |
| CTGTCTGCTGATATGTTCAT+TGG | 0.453096 | 8.4:-24541642 | None:intergenic |
| TTCTTACCTTCTTTAGGTCA+GGG | 0.453555 | 8.4:-24542649 | None:intergenic |
| AAACGTGTGTTATCCAAATT+GGG | 0.468589 | 8.4:-24542467 | None:intergenic |
| TCATGTAAAAGATCACATTA+TGG | 0.480835 | 8.4:+24542568 | MS.gene46335:CDS |
| TCAAACCCGTATAAATCTGT+TGG | 0.488589 | 8.4:-24542410 | None:intergenic |
| CAAACCCGTATAAATCTGTT+GGG | 0.491045 | 8.4:-24542409 | None:intergenic |
| GAGTTCTGCAAGAGCAATGA+AGG | 0.495896 | 8.4:-24542624 | None:intergenic |
| ACTCTAAGTGAAACATTCAA+TGG | 0.521045 | 8.4:+24542224 | MS.gene46335:CDS |
| CAAACCCAACAGATTTATAC+GGG | 0.531352 | 8.4:+24542405 | MS.gene46335:CDS |
| CTAAAACATCACAATCTAAG+AGG | 0.533656 | 8.4:+24542537 | MS.gene46335:CDS |
| ATTGAATGTTTCACTTAGAG+TGG | 0.534149 | 8.4:-24542222 | None:intergenic |
| AATCTCCAAAGGCTAAAATA+CGG | 0.534934 | 8.4:-24543298 | None:intergenic |
| GGGTTTGGGTTGTCAAAAGA+CGG | 0.535552 | 8.4:-24542389 | None:intergenic |
| ACTCATCCCTGACCTAAAGA+AGG | 0.555210 | 8.4:+24542643 | MS.gene46335:CDS |
| TCTTTGTTCCTCAAAGGCAA+TGG | 0.566921 | 8.4:-24542174 | None:intergenic |
| TGGTGATGCTACTGCTATCA+GGG | 0.568737 | 8.4:+24543157 | MS.gene46335:CDS |
| GGTCTCTCTTTGTTCCTCAA+AGG | 0.568777 | 8.4:-24542180 | None:intergenic |
| GAATGTTTCACTTAGAGTGG+TGG | 0.569449 | 8.4:-24542219 | None:intergenic |
| TGAGATGACTGAAAGGAGGA+TGG | 0.574415 | 8.4:-24542362 | None:intergenic |
| CAGCAATGATTGTAATGTCG+TGG | 0.584079 | 8.4:-24543325 | None:intergenic |
| GGTGGAAATACATTGTTGTA+GGG | 0.584105 | 8.4:-24542201 | None:intergenic |
| GGGTAGAAGCAAAAGTGTCA+GGG | 0.600504 | 8.4:+24543177 | MS.gene46335:CDS |
| ATTGGGCAATGACACTGAAG+TGG | 0.602756 | 8.4:-24542450 | None:intergenic |
| CGGAATCTGAGATGACTGAA+AGG | 0.608461 | 8.4:-24542369 | None:intergenic |
| TCAGTTTCACAATAATGGTG+TGG | 0.609425 | 8.4:-24543128 | None:intergenic |
| AGAGTTTCTCTCACGTGACA+TGG | 0.613188 | 8.4:+24542145 | MS.gene46335:CDS |
| AATCAACGTGCAGGAAAAGG+TGG | 0.620825 | 8.4:+24542061 | MS.gene46335:intron |
| TATTGTGAAACTGAAAGTGT+TGG | 0.622676 | 8.4:+24543137 | MS.gene46335:CDS |
| TGAATACATGTTATTTGACA+AGG | 0.622791 | 8.4:+24542085 | MS.gene46335:CDS |
| TCTCACCAAATCAGATAACA+AGG | 0.622982 | 8.4:-24541667 | None:intergenic |
| TTGGGCAATGACACTGAAGT+GGG | 0.628306 | 8.4:-24542449 | None:intergenic |
| ATATGTTAATTAGAAGGACA+AGG | 0.637697 | 8.4:+24542989 | MS.gene46335:intron |
| CACAAAGGAAGATCAATCGA+TGG | 0.644880 | 8.4:+24543091 | MS.gene46335:CDS |
| GAACTTGCTTGATGCTGACG+TGG | 0.647274 | 8.4:+24542118 | MS.gene46335:CDS |
| CGACATTACAATCATTGCTG+AGG | 0.658041 | 8.4:+24543328 | MS.gene46335:CDS |
| GTCGTGGAAAGAATCTCCAA+AGG | 0.662563 | 8.4:-24543309 | None:intergenic |
| AGAAGAAGGGAAGAACACAA+AGG | 0.671726 | 8.4:+24543076 | MS.gene46335:CDS |
| AGAAAACGAAGAGAGAAACT+CGG | 0.672023 | 8.4:+24542596 | MS.gene46335:CDS |
| ACTCGTCCAGAATCTACGCA+TGG | 0.674291 | 8.4:+24546521 | MS.gene46335:CDS |
| AATCTGAGATGACTGAAAGG+AGG | 0.678400 | 8.4:-24542366 | None:intergenic |
| AAAGGAAGATCAATCGATGG+TGG | 0.686344 | 8.4:+24543094 | MS.gene46335:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTAATTTTTAAAAATT+TGG | - | chr8.4:24543738-24543757 | None:intergenic | 0.0% |
| !!! | TAAATTTTTTTTTATTTTTT+GGG | + | chr8.4:24543940-24543959 | MS.gene46335:intron | 0.0% |
| !!! | TTAAATTTTTTTTTATTTTT+TGG | + | chr8.4:24543939-24543958 | MS.gene46335:intron | 0.0% |
| !! | ATAATATAAGAAAATTAAAG+TGG | - | chr8.4:24542933-24542952 | None:intergenic | 10.0% |
| !! | TGAACTATTATTATTTATTA+CGG | - | chr8.4:24545181-24545200 | None:intergenic | 10.0% |
| !!! | AATATTTTTATGATTTTTTG+GGG | - | chr8.4:24543548-24543567 | None:intergenic | 10.0% |
| !!! | GAATATTTTTATGATTTTTT+GGG | - | chr8.4:24543549-24543568 | None:intergenic | 10.0% |
| !!! | TCGAAAATTTTTAAAAAATT+AGG | + | chr8.4:24543595-24543614 | MS.gene46335:intron | 10.0% |
| !!! | TGAATATTTTTATGATTTTT+TGG | - | chr8.4:24543550-24543569 | None:intergenic | 10.0% |
| !!! | TTTCGATTTTTTAAATTTTT+TGG | - | chr8.4:24543581-24543600 | None:intergenic | 10.0% |
| !! | ACATCAAAATATTTAATGAT+TGG | - | chr8.4:24544489-24544508 | None:intergenic | 15.0% |
| !! | GAACTATTATTATTTATTAC+GGG | - | chr8.4:24545180-24545199 | None:intergenic | 15.0% |
| !! | TAGAATTTATTCCTAAAATA+TGG | - | chr8.4:24546077-24546096 | None:intergenic | 15.0% |
| !! | TCTTAATAAATAAATCACTA+TGG | + | chr8.4:24546187-24546206 | MS.gene46335:intron | 15.0% |
| !! | TGTAAAATATGTTAATTAGA+AGG | + | chr8.4:24542983-24543002 | MS.gene46335:intron | 15.0% |
| !! | TTATTAGATGAAATTCATAT+AGG | - | chr8.4:24546115-24546134 | None:intergenic | 15.0% |
| !!! | CACTCATTTTATAAAAAATT+AGG | + | chr8.4:24546050-24546069 | MS.gene46335:intron | 15.0% |
| !!! | CAGATTTTTTTAAAAAATTC+TGG | - | chr8.4:24543765-24543784 | None:intergenic | 15.0% |
| !!! | CTTCTTTTTTATCTTTTTAT+TGG | + | chr8.4:24544374-24544393 | MS.gene46335:intron | 15.0% |
| !!! | GTCTAGAAATTTTTATATAT+GGG | - | chr8.4:24546214-24546233 | None:intergenic | 15.0% |
| !!! | TAAAATATCTTTTAAATGCA+AGG | - | chr8.4:24545150-24545169 | None:intergenic | 15.0% |
| !!! | TATCATGAACTTAAATTTTA+GGG | + | chr8.4:24545739-24545758 | MS.gene46335:intron | 15.0% |
| !!! | TCAGATTTTTTTAAAAATTC+TGG | + | chr8.4:24543637-24543656 | MS.gene46335:intron | 15.0% |
| !!! | TCAGATTTTTTTTAAAATTC+TGG | - | chr8.4:24543888-24543907 | None:intergenic | 15.0% |
| !!! | TCTAGAAATTTTTATATATG+GGG | - | chr8.4:24546213-24546232 | None:intergenic | 15.0% |
| !! | AAAAAATCAGAAAAAAACCA+GGG | + | chr8.4:24544816-24544835 | MS.gene46335:intron | 20.0% |
| !! | AAATATAAATGAGAGAACAA+TGG | - | chr8.4:24546008-24546027 | None:intergenic | 20.0% |
| !! | ACAAAATAAACTCTATGATT+TGG | - | chr8.4:24544249-24544268 | None:intergenic | 20.0% |
| !! | ATTATTCTCTTTGTCAAAAA+AGG | + | chr8.4:24545633-24545652 | MS.gene46335:intron | 20.0% |
| !! | TAAAAAATCAGAAAAAAACC+AGG | + | chr8.4:24544815-24544834 | MS.gene46335:intron | 20.0% |
| !! | TAAAAAGTAATCAAGCTTAT+GGG | - | chr8.4:24544465-24544484 | None:intergenic | 20.0% |
| !! | TAAAATTGTACGTGTATTAA+AGG | - | chr8.4:24545342-24545361 | None:intergenic | 20.0% |
| !! | TAACAATCAATACAAATAAG+TGG | - | chr8.4:24546449-24546468 | None:intergenic | 20.0% |
| !! | TACATGTATTAAAGTAGATT+AGG | - | chr8.4:24545382-24545401 | None:intergenic | 20.0% |
| !! | TTAAAAAGTAATCAAGCTTA+TGG | - | chr8.4:24544466-24544485 | None:intergenic | 20.0% |
| !! | TTATTCTCTTTGTCAAAAAA+GGG | + | chr8.4:24545634-24545653 | MS.gene46335:intron | 20.0% |
| !! | TTGGATACCAATTTAAAAAA+AGG | - | chr8.4:24543719-24543738 | None:intergenic | 20.0% |
| !!! | AAAAATTAGGTCCATATTTT+AGG | + | chr8.4:24546063-24546082 | MS.gene46335:intron | 20.0% |
| !!! | AAATCTGAGTCTTTTATTAA+AGG | - | chr8.4:24544136-24544155 | None:intergenic | 20.0% |
| !!! | AACTAGCTAAACTTTATTTA+CGG | - | chr8.4:24541779-24541798 | None:intergenic | 20.0% |
| !!! | AATCTGACCTTTTTTTAAAT+TGG | + | chr8.4:24543709-24543728 | MS.gene46335:intron | 20.0% |
| !!! | ATTTTTTAAGCAATATGTAG+GGG | - | chr8.4:24544803-24544822 | None:intergenic | 20.0% |
| !!! | CATTCTCTTTAAAAAAACAA+TGG | - | chr8.4:24545937-24545956 | None:intergenic | 20.0% |
| !!! | CTTAAATAATGAAAACGTTT+TGG | - | chr8.4:24545601-24545620 | None:intergenic | 20.0% |
| !!! | GATTTTTTAAGCAATATGTA+GGG | - | chr8.4:24544804-24544823 | None:intergenic | 20.0% |
| !!! | GGTCTAGAAATTTTTATATA+TGG | - | chr8.4:24546215-24546234 | None:intergenic | 20.0% |
| !!! | GTATCATGAACTTAAATTTT+AGG | + | chr8.4:24545738-24545757 | MS.gene46335:intron | 20.0% |
| !!! | TCTATTATTGTTTTACAGAT+TGG | + | chr8.4:24546471-24546490 | MS.gene46335:intron | 20.0% |
| !!! | TGAACTTTTCATAGTTTATA+TGG | + | chr8.4:24545810-24545829 | MS.gene46335:intron | 20.0% |
| !!! | TGATTTTTTAAGCAATATGT+AGG | - | chr8.4:24544805-24544824 | None:intergenic | 20.0% |
| !!! | TTAATACACGTACAATTTTA+TGG | + | chr8.4:24545342-24545361 | MS.gene46335:intron | 20.0% |
| !!! | TTTTGTTATTTTGACTAAGT+GGG | + | chr8.4:24545096-24545115 | MS.gene46335:intron | 20.0% |
| !!! | TTTTTTGACAAAGAGAATAA+TGG | - | chr8.4:24545634-24545653 | None:intergenic | 20.0% |
| ! | AAGATGATGTAGAGAATAAA+TGG | - | chr8.4:24544172-24544191 | None:intergenic | 25.0% |
| ! | AGGACATTCTCTTATAATAA+AGG | + | chr8.4:24543354-24543373 | MS.gene46335:intron | 25.0% |
| ! | ATAATTGTATAGGTAGATCT+TGG | + | chr8.4:24544940-24544959 | MS.gene46335:intron | 25.0% |
| ! | ATATGTTAATTAGAAGGACA+AGG | + | chr8.4:24542989-24543008 | MS.gene46335:intron | 25.0% |
| ! | ATGTTTAAGCGATAAAATGA+TGG | - | chr8.4:24545963-24545982 | None:intergenic | 25.0% |
| ! | CTATTATTATTTATTACGGG+AGG | - | chr8.4:24545177-24545196 | None:intergenic | 25.0% |
| ! | CTGGATACCAATTTAAAAAA+AGG | - | chr8.4:24543789-24543808 | None:intergenic | 25.0% |
| ! | TCATGTAAAAGATCACATTA+TGG | + | chr8.4:24542568-24542587 | MS.gene46335:CDS | 25.0% |
| ! | TGAATGAGAAAGTTGTTTAA+TGG | + | chr8.4:24546399-24546418 | MS.gene46335:intron | 25.0% |
| ! | TTGATGTTGCGTTTATAAAA+CGG | - | chr8.4:24541971-24541990 | None:intergenic | 25.0% |
| !! | ATAACTTTTCTCTTTTTGTG+TGG | + | chr8.4:24546161-24546180 | MS.gene46335:intron | 25.0% |
| !! | TGAATACATGTTATTTGACA+AGG | + | chr8.4:24542085-24542104 | MS.gene46335:CDS | 25.0% |
| !!! | ATTTTTTGAAGACTCAATTG+AGG | - | chr8.4:24542504-24542523 | None:intergenic | 25.0% |
| !!! | GTATGCATAGTTTTAAAACT+CGG | - | chr8.4:24545541-24545560 | None:intergenic | 25.0% |
| !!! | GTTTTGTTATTTTGACTAAG+TGG | + | chr8.4:24545095-24545114 | MS.gene46335:intron | 25.0% |
| !!! | TGTCAATTTTAGAAGAAGAA+GGG | + | chr8.4:24543063-24543082 | MS.gene46335:CDS | 25.0% |
| !!! | TTGTCAATTTTAGAAGAAGA+AGG | + | chr8.4:24543062-24543081 | MS.gene46335:CDS | 25.0% |
| !!! | TTTTCATAAGTTGAGATTGT+GGG | - | chr8.4:24544582-24544601 | None:intergenic | 25.0% |
| !!! | TTTTGGTTATGTTGTTACTT+TGG | - | chr8.4:24542316-24542335 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAGACTCAATTGA+GGG | - | chr8.4:24542503-24542522 | None:intergenic | 25.0% |
| AAAAATTTCAGCTTCTTGGT+TGG | - | chr8.4:24542290-24542309 | None:intergenic | 30.0% | |
| AAACGTGTGTTATCCAAATT+GGG | - | chr8.4:24542470-24542489 | None:intergenic | 30.0% | |
| AATCTCCAAAGGCTAAAATA+CGG | - | chr8.4:24543301-24543320 | None:intergenic | 30.0% | |
| ACTCTAAGTGAAACATTCAA+TGG | + | chr8.4:24542224-24542243 | MS.gene46335:CDS | 30.0% | |
| AGGGCTTAATACAAGTAAAA+AGG | + | chr8.4:24545758-24545777 | MS.gene46335:intron | 30.0% | |
| AGTTACTTCTTACCTTCTTT+AGG | - | chr8.4:24542658-24542677 | None:intergenic | 30.0% | |
| ATGACTGAACCGTATTAAAT+CGG | - | chr8.4:24545444-24545463 | None:intergenic | 30.0% | |
| ATGGTTGTATAATTTCTCTC+TGG | + | chr8.4:24546418-24546437 | MS.gene46335:intron | 30.0% | |
| ATTGAATGTTTCACTTAGAG+TGG | - | chr8.4:24542225-24542244 | None:intergenic | 30.0% | |
| CAAAAAAAAACATGAGAGAC+AGG | - | chr8.4:24541704-24541723 | None:intergenic | 30.0% | |
| CACTTTCAGTTTCACAATAA+TGG | - | chr8.4:24543136-24543155 | None:intergenic | 30.0% | |
| CATGGAAAGAAAATTTAGAG+AGG | + | chr8.4:24544913-24544932 | MS.gene46335:intron | 30.0% | |
| CTAAAACATCACAATCTAAG+AGG | + | chr8.4:24542537-24542556 | MS.gene46335:CDS | 30.0% | |
| GACTAGTAAGATATAGTCAT+AGG | - | chr8.4:24542960-24542979 | None:intergenic | 30.0% | |
| GGGCTTAATACAAGTAAAAA+GGG | + | chr8.4:24545759-24545778 | MS.gene46335:intron | 30.0% | |
| GTCAAAAAATTTCAGCTTCT+TGG | - | chr8.4:24542294-24542313 | None:intergenic | 30.0% | |
| GTCTTCAAAAAATCAGAACT+TGG | + | chr8.4:24542511-24542530 | MS.gene46335:CDS | 30.0% | |
| GTTTATAAAACGGAGTTTGA+TGG | - | chr8.4:24541961-24541980 | None:intergenic | 30.0% | |
| GTTTCAGTCAAATTTGAACT+CGG | + | chr8.4:24541799-24541818 | MS.gene46335:intron | 30.0% | |
| TAATTCTTTAATCAACGTGC+AGG | + | chr8.4:24542052-24542071 | MS.gene46335:intron | 30.0% | |
| TAGGAAAAGTAGTGTAACTA+GGG | + | chr8.4:24545057-24545076 | MS.gene46335:intron | 30.0% | |
| TGTATTAAAGTAGATTAGGC+CGG | - | chr8.4:24545378-24545397 | None:intergenic | 30.0% | |
| TTAGGAAAAGTAGTGTAACT+AGG | + | chr8.4:24545056-24545075 | MS.gene46335:intron | 30.0% | |
| TTGCAAGAAAATCAACCTAA+AGG | - | chr8.4:24545122-24545141 | None:intergenic | 30.0% | |
| ! | AAAGCTTGCAGTTTGTATTT+TGG | - | chr8.4:24545703-24545722 | None:intergenic | 30.0% |
| ! | AAATCGATCGTTTGAAACAA+TGG | - | chr8.4:24543490-24543509 | None:intergenic | 30.0% |
| ! | AACTAGGGTTTTCATTATGT+GGG | + | chr8.4:24545072-24545091 | MS.gene46335:intron | 30.0% |
| ! | AAGCTTGCAGTTTGTATTTT+GGG | - | chr8.4:24545702-24545721 | None:intergenic | 30.0% |
| ! | AAGTTGCTGTGAAAAGTTTT+TGG | - | chr8.4:24542333-24542352 | None:intergenic | 30.0% |
| ! | AATCGATCGTTTGAAACAAT+GGG | - | chr8.4:24543489-24543508 | None:intergenic | 30.0% |
| ! | TAACTAGGGTTTTCATTATG+TGG | + | chr8.4:24545071-24545090 | MS.gene46335:intron | 30.0% |
| ! | TATTGTGAAACTGAAAGTGT+TGG | + | chr8.4:24543137-24543156 | MS.gene46335:CDS | 30.0% |
| ! | TTTCATAAGTTGAGATTGTG+GGG | - | chr8.4:24544581-24544600 | None:intergenic | 30.0% |
| !! | AAATTGCTGGTTTGAAACAA+TGG | - | chr8.4:24543431-24543450 | None:intergenic | 30.0% |
| !! | AATTGCTGGTTTGAAACAAT+GGG | - | chr8.4:24543430-24543449 | None:intergenic | 30.0% |
| !! | ATTGTTTTACAGATTGGTGA+AGG | + | chr8.4:24546477-24546496 | MS.gene46335:intron | 30.0% |
| !! | ATTTTGATGTTTTGCTCTAG+AGG | + | chr8.4:24544499-24544518 | MS.gene46335:intron | 30.0% |
| !! | GTTTTCATAAGTTGAGATTG+TGG | - | chr8.4:24544583-24544602 | None:intergenic | 30.0% |
| !!! | AATAACCGTATTTTAGCCTT+TGG | + | chr8.4:24543293-24543312 | MS.gene46335:CDS | 30.0% |
| !!! | ACGATCATAGTTTTAAAACC+CGG | + | chr8.4:24544605-24544624 | MS.gene46335:intron | 30.0% |
| !!! | CGTTTGTTTTTACAAAAGTG+CGG | - | chr8.4:24546356-24546375 | None:intergenic | 30.0% |
| AAATCACGACAAAAACGCAT+TGG | - | chr8.4:24541897-24541916 | None:intergenic | 35.0% | |
| AATATAGGGTGCAAAATTGC+TGG | - | chr8.4:24543444-24543463 | None:intergenic | 35.0% | |
| AATCACGACAAAAACGCATT+GGG | - | chr8.4:24541896-24541915 | None:intergenic | 35.0% | |
| AGAAAACGAAGAGAGAAACT+CGG | + | chr8.4:24542596-24542615 | MS.gene46335:CDS | 35.0% | |
| AGTTCATTAACCACTTCAGT+TGG | + | chr8.4:24542013-24542032 | MS.gene46335:intron | 35.0% | |
| ATATCACGTCTAACATGCAT+TGG | - | chr8.4:24546288-24546307 | None:intergenic | 35.0% | |
| ATCCATTGCCAAAAACATGA+TGG | + | chr8.4:24543218-24543237 | MS.gene46335:CDS | 35.0% | |
| ATGCATTGGGAAGTGAAATT+TGG | - | chr8.4:24546274-24546293 | None:intergenic | 35.0% | |
| CAAACCCAACAGATTTATAC+GGG | + | chr8.4:24542405-24542424 | MS.gene46335:CDS | 35.0% | |
| CAAACCCGTATAAATCTGTT+GGG | - | chr8.4:24542412-24542431 | None:intergenic | 35.0% | |
| CAAACGTGTGTTATCCAAAT+TGG | - | chr8.4:24542471-24542490 | None:intergenic | 35.0% | |
| CACAATTGGCAAAATATAGG+GGG | + | chr8.4:24544034-24544053 | MS.gene46335:intron | 35.0% | |
| CACAATTGGCAAAATATAGG+GGG | - | chr8.4:24544053-24544034 | None:intergenic | 35.0% | |
| CATGGTGAAAACTAAAGACA+TGG | + | chr8.4:24544882-24544901 | MS.gene46335:intron | 35.0% | |
| CCAAACCCAACAGATTTATA+CGG | + | chr8.4:24542404-24542423 | MS.gene46335:CDS | 35.0% | |
| CCGAGTTATCCGATTTAATA+CGG | + | chr8.4:24545432-24545451 | MS.gene46335:intron | 35.0% | |
| CCGTATTAAATCGGATAACT+CGG | - | chr8.4:24545435-24545454 | None:intergenic | 35.0% | |
| CGAAAAAAACCGGTAAAAAC+CGG | + | chr8.4:24544735-24544754 | MS.gene46335:intron | 35.0% | |
| CGCACAATTGGCAAAATATA+GGG | + | chr8.4:24544032-24544051 | MS.gene46335:intron | 35.0% | |
| CGCACAATTGGCAAAATATA+GGG | - | chr8.4:24544051-24544032 | None:intergenic | 35.0% | |
| CGTATAAATCTGTTGGGTTT+GGG | - | chr8.4:24542406-24542425 | None:intergenic | 35.0% | |
| CTCTTGTCTTAGAAAGAGAT+CGG | + | chr8.4:24541732-24541751 | MS.gene46335:intron | 35.0% | |
| GAGAGAAAGATCAAATGTGA+GGG | + | chr8.4:24544987-24545006 | MS.gene46335:intron | 35.0% | |
| GCACAATTGGCAAAATATAG+GGG | + | chr8.4:24544033-24544052 | MS.gene46335:intron | 35.0% | |
| GCACAATTGGCAAAATATAG+GGG | - | chr8.4:24544052-24544033 | None:intergenic | 35.0% | |
| GGAAAGAAAATTTAGAGAGG+AGG | + | chr8.4:24544916-24544935 | MS.gene46335:intron | 35.0% | |
| GGCAACACAATATTTGAAAG+GGG | - | chr8.4:24544559-24544578 | None:intergenic | 35.0% | |
| GGGCAACACAATATTTGAAA+GGG | - | chr8.4:24544560-24544579 | None:intergenic | 35.0% | |
| GGTGGAAATACATTGTTGTA+GGG | - | chr8.4:24542204-24542223 | None:intergenic | 35.0% | |
| GTGACTTTATGTGTTGCAAA+CGG | - | chr8.4:24541861-24541880 | None:intergenic | 35.0% | |
| TACAATCATTGCTGAGGTAA+AGG | + | chr8.4:24543334-24543353 | MS.gene46335:intron | 35.0% | |
| TATCACGTCTAACATGCATT+GGG | - | chr8.4:24546287-24546306 | None:intergenic | 35.0% | |
| TCAAACCCGTATAAATCTGT+TGG | - | chr8.4:24542413-24542432 | None:intergenic | 35.0% | |
| TCAGTTTCACAATAATGGTG+TGG | - | chr8.4:24543131-24543150 | None:intergenic | 35.0% | |
| TCCAAACATGTCATTAGTGA+CGG | - | chr8.4:24546237-24546256 | None:intergenic | 35.0% | |
| TCGCACAATTGGCAAAATAT+AGG | + | chr8.4:24544031-24544050 | MS.gene46335:intron | 35.0% | |
| TCGCACAATTGGCAAAATAT+AGG | - | chr8.4:24544050-24544031 | None:intergenic | 35.0% | |
| TCTCACCAAATCAGATAACA+AGG | - | chr8.4:24541670-24541689 | None:intergenic | 35.0% | |
| TCTTGTCTTAGAAAGAGATC+GGG | + | chr8.4:24541733-24541752 | MS.gene46335:intron | 35.0% | |
| TGACAAAGAGAATAATGGCA+TGG | - | chr8.4:24545629-24545648 | None:intergenic | 35.0% | |
| TGACTTTATGTGTTGCAAAC+GGG | - | chr8.4:24541860-24541879 | None:intergenic | 35.0% | |
| TGAGAGAAAGATCAAATGTG+AGG | + | chr8.4:24544986-24545005 | MS.gene46335:intron | 35.0% | |
| TGGTGGAAATACATTGTTGT+AGG | - | chr8.4:24542205-24542224 | None:intergenic | 35.0% | |
| TTCTTACCTTCTTTAGGTCA+GGG | - | chr8.4:24542652-24542671 | None:intergenic | 35.0% | |
| TTTAATACGGTTCAGTCATG+CGG | + | chr8.4:24545445-24545464 | MS.gene46335:intron | 35.0% | |
| TTTAATCAACGTGCAGGAAA+AGG | + | chr8.4:24542058-24542077 | MS.gene46335:intron | 35.0% | |
| ! | AAATCGCTCGTTTGAAACAA+TGG | + | chr8.4:24543999-24544018 | MS.gene46335:intron | 35.0% |
| ! | AAGCTAGTATTTAAAGCTCC+TGG | - | chr8.4:24541920-24541939 | None:intergenic | 35.0% |
| ! | AATCGCTCGTTTGAAACAAT+GGG | + | chr8.4:24544000-24544019 | MS.gene46335:intron | 35.0% |
| ! | ACTAGGGTTTTCATTATGTG+GGG | + | chr8.4:24545073-24545092 | MS.gene46335:intron | 35.0% |
| ! | AGAGAGAGAAGTATGAACAT+GGG | + | chr8.4:24544408-24544427 | MS.gene46335:intron | 35.0% |
| ! | ATTCTGGACGAGTTCTTTTA+AGG | - | chr8.4:24546514-24546533 | None:intergenic | 35.0% |
| ! | CAAGAAGTCCATCATGTTTT+TGG | - | chr8.4:24543229-24543248 | None:intergenic | 35.0% |
| ! | CAGGGAAAAAGATGTTGATT+CGG | + | chr8.4:24543195-24543214 | MS.gene46335:CDS | 35.0% |
| ! | GAGAGGAGGTATAATTGTAT+AGG | + | chr8.4:24544930-24544949 | MS.gene46335:intron | 35.0% |
| ! | TAGAGAGAGAAGTATGAACA+TGG | + | chr8.4:24544407-24544426 | MS.gene46335:intron | 35.0% |
| ! | TTCATAAGTTGAGATTGTGG+GGG | - | chr8.4:24544580-24544599 | None:intergenic | 35.0% |
| !! | AAAGACATGGTTCTAGTTCA+TGG | + | chr8.4:24544895-24544914 | MS.gene46335:intron | 35.0% |
| !! | ATTGCTGGTTTGAAACAATG+GGG | - | chr8.4:24543429-24543448 | None:intergenic | 35.0% |
| !! | GATCTCTTTCTAAGACAAGA+GGG | - | chr8.4:24541733-24541752 | None:intergenic | 35.0% |
| !!! | CATAGTTTTAAAACTCGGAC+CGG | - | chr8.4:24545536-24545555 | None:intergenic | 35.0% |
| AAAGGAAGATCAATCGATGG+TGG | + | chr8.4:24543094-24543113 | MS.gene46335:CDS | 40.0% | |
| AACGCTCTTTAAGCTCTTTG+AGG | - | chr8.4:24543043-24543062 | None:intergenic | 40.0% | |
| ACAGATCTTGGTTACAGTCA+TGG | + | chr8.4:24544864-24544883 | MS.gene46335:intron | 40.0% | |
| ACGGAGTTTGATGGAAATCA+CGG | - | chr8.4:24541952-24541971 | None:intergenic | 40.0% | |
| AGAAAGATCAAATGTGAGGG+AGG | + | chr8.4:24544990-24545009 | MS.gene46335:intron | 40.0% | |
| AGAAGAAGGGAAGAACACAA+AGG | + | chr8.4:24543076-24543095 | MS.gene46335:CDS | 40.0% | |
| ATCAGAAAGGGGGAAAACTA+TGG | - | chr8.4:24543989-24543970 | None:intergenic | 40.0% | |
| ATCTGCTATAGTGACTGTGA+CGG | - | chr8.4:24544531-24544550 | None:intergenic | 40.0% | |
| CACAAAGGAAGATCAATCGA+TGG | + | chr8.4:24543091-24543110 | MS.gene46335:CDS | 40.0% | |
| CAGAACACGATAACAGATCT+TGG | + | chr8.4:24544852-24544871 | MS.gene46335:intron | 40.0% | |
| CAGCAATGATTGTAATGTCG+TGG | - | chr8.4:24543328-24543347 | None:intergenic | 40.0% | |
| CATTTGCAAACCAACTGAAG+TGG | - | chr8.4:24542026-24542045 | None:intergenic | 40.0% | |
| CCAAACATGTCATTAGTGAC+GGG | - | chr8.4:24546236-24546255 | None:intergenic | 40.0% | |
| CCGTATAAATCTGTTGGGTT+TGG | - | chr8.4:24542407-24542426 | None:intergenic | 40.0% | |
| CGACATTACAATCATTGCTG+AGG | + | chr8.4:24543328-24543347 | MS.gene46335:CDS | 40.0% | |
| CTGTCTGCTGATATGTTCAT+TGG | - | chr8.4:24541645-24541664 | None:intergenic | 40.0% | |
| CTTCTTACCTTCTTTAGGTC+AGG | - | chr8.4:24542653-24542672 | None:intergenic | 40.0% | |
| GAATGTTTCACTTAGAGTGG+TGG | - | chr8.4:24542222-24542241 | None:intergenic | 40.0% | |
| GATAACTCGGTAGTATGACT+CGG | - | chr8.4:24545422-24545441 | None:intergenic | 40.0% | |
| GGGGCAACACAATATTTGAA+AGG | - | chr8.4:24544561-24544580 | None:intergenic | 40.0% | |
| TCAGAAAGGGGGAAAACTAT+GGG | - | chr8.4:24543990-24543971 | None:intergenic | 40.0% | |
| TCTTTGTTCCTCAAAGGCAA+TGG | - | chr8.4:24542177-24542196 | None:intergenic | 40.0% | |
| TGGGTGAAAAATCGCACAAT+TGG | - | chr8.4:24543470-24543489 | None:intergenic | 40.0% | |
| TTGGGGTGCAAAATCAGAAA+GGG | + | chr8.4:24543958-24543977 | MS.gene46335:intron | 40.0% | |
| TTGGGGTGCAAAATCAGAAA+GGG | - | chr8.4:24543977-24543958 | None:intergenic | 40.0% | |
| ! | AATCTGAGATGACTGAAAGG+AGG | - | chr8.4:24542369-24542388 | None:intergenic | 40.0% |
| ! | ATCGACTCAGCAATACTACT+GGG | - | chr8.4:24545511-24545530 | None:intergenic | 40.0% |
| ! | ATCGCTCGTTTGAAACAATG+GGG | + | chr8.4:24544001-24544020 | MS.gene46335:intron | 40.0% |
| ! | ATGTAGCTTTTGCTTTGCCA+TGG | + | chr8.4:24546323-24546342 | MS.gene46335:intron | 40.0% |
| ! | ATTTTATGGACCGAGTCATC+CGG | + | chr8.4:24545356-24545375 | MS.gene46335:intron | 40.0% |
| ! | CAGCACCTTGTTATCTGATT+TGG | + | chr8.4:24541662-24541681 | MS.gene46335:CDS | 40.0% |
| ! | CGGGTAATTTGTAGTTCAGT+CGG | + | chr8.4:24541752-24541771 | MS.gene46335:intron | 40.0% |
| ! | TGTAGCTTTTGCTTTGCCAT+GGG | + | chr8.4:24546324-24546343 | MS.gene46335:intron | 40.0% |
| ! | TTCAGTGTCATTGCCCAATT+TGG | + | chr8.4:24542454-24542473 | MS.gene46335:CDS | 40.0% |
| ! | TTTGGGGTGCAAAATCAGAA+AGG | + | chr8.4:24543957-24543976 | MS.gene46335:intron | 40.0% |
| ! | TTTGGGGTGCAAAATCAGAA+AGG | - | chr8.4:24543976-24543957 | None:intergenic | 40.0% |
| !! | ATTTTGGGTGTGGTAGTATG+TGG | - | chr8.4:24545687-24545706 | None:intergenic | 40.0% |
| !! | CGATCTCTTTCTAAGACAAG+AGG | - | chr8.4:24541734-24541753 | None:intergenic | 40.0% |
| !! | TGCAGTTTGTATTTTGGGTG+TGG | - | chr8.4:24545697-24545716 | None:intergenic | 40.0% |
| !! | TTTTGACTAAGTGGGCCTTT+AGG | + | chr8.4:24545104-24545123 | MS.gene46335:intron | 40.0% |
| !!! | GTCCATCATGTTTTTGGCAA+TGG | - | chr8.4:24543223-24543242 | None:intergenic | 40.0% |
| AAACCAAGTGACCAACCACA+CGG | - | chr8.4:24541837-24541856 | None:intergenic | 45.0% | |
| AAGCTATAACCATGCCAGCT+CGG | + | chr8.4:24545572-24545591 | MS.gene46335:intron | 45.0% | |
| AATCAACGTGCAGGAAAAGG+TGG | + | chr8.4:24542061-24542080 | MS.gene46335:intron | 45.0% | |
| ACTCATCCCTGACCTAAAGA+AGG | + | chr8.4:24542643-24542662 | MS.gene46335:CDS | 45.0% | |
| AGAGTTTCTCTCACGTGACA+TGG | + | chr8.4:24542145-24542164 | MS.gene46335:CDS | 45.0% | |
| AGATCAAATGTGAGGGAGGT+TGG | + | chr8.4:24544994-24545013 | MS.gene46335:intron | 45.0% | |
| AGTATTGCTGAGTCGATGAC+CGG | + | chr8.4:24545514-24545533 | MS.gene46335:intron | 45.0% | |
| ATCCATTGCTTAGCTCGAAC+CGG | - | chr8.4:24544678-24544697 | None:intergenic | 45.0% | |
| ATTGGGCAATGACACTGAAG+TGG | - | chr8.4:24542453-24542472 | None:intergenic | 45.0% | |
| CAGAAAGGGGGAAAACTATG+GGG | - | chr8.4:24543991-24543972 | None:intergenic | 45.0% | |
| CAGAAAGGGGGAAAACTATG+TGG | + | chr8.4:24543972-24543991 | MS.gene46335:intron | 45.0% | |
| CATGTGTGCAACAATCAACG+AGG | - | chr8.4:24542720-24542739 | None:intergenic | 45.0% | |
| CCCGTCACTAATGACATGTT+TGG | + | chr8.4:24546233-24546252 | MS.gene46335:intron | 45.0% | |
| CGCTGCTGCTAACTTCATTT+AGG | + | chr8.4:24545038-24545057 | MS.gene46335:intron | 45.0% | |
| CGGAACGACTCGAAAAAAAC+CGG | + | chr8.4:24544725-24544744 | MS.gene46335:intron | 45.0% | |
| GAGTTCTGCAAGAGCAATGA+AGG | - | chr8.4:24542627-24542646 | None:intergenic | 45.0% | |
| GATCAGCCATGCAATAGAAC+CGG | + | chr8.4:24544695-24544714 | MS.gene46335:intron | 45.0% | |
| GGTCTCTCTTTGTTCCTCAA+AGG | - | chr8.4:24542183-24542202 | None:intergenic | 45.0% | |
| GGTTATGTGTTGAACCGGTT+CGG | - | chr8.4:24544782-24544801 | None:intergenic | 45.0% | |
| GTAGGGGTTATGTGTTGAAC+CGG | - | chr8.4:24544787-24544806 | None:intergenic | 45.0% | |
| GTCGTGGAAAGAATCTCCAA+AGG | - | chr8.4:24543312-24543331 | None:intergenic | 45.0% | |
| TCTGCTATAGTGACTGTGAC+GGG | - | chr8.4:24544530-24544549 | None:intergenic | 45.0% | |
| TGACATGTTTGGATCAGCGT+TGG | + | chr8.4:24546244-24546263 | MS.gene46335:intron | 45.0% | |
| TGAGATGACTGAAAGGAGGA+TGG | - | chr8.4:24542365-24542384 | None:intergenic | 45.0% | |
| TGGGGTGCAAAATCAGAAAG+GGG | + | chr8.4:24543959-24543978 | MS.gene46335:intron | 45.0% | |
| TGGGGTGCAAAATCAGAAAG+GGG | - | chr8.4:24543978-24543959 | None:intergenic | 45.0% | |
| TTGGGCAATGACACTGAAGT+GGG | - | chr8.4:24542452-24542471 | None:intergenic | 45.0% | |
| ! | AAAAGTGCGGTGAATTCCCA+TGG | - | chr8.4:24546343-24546362 | None:intergenic | 45.0% |
| ! | CGGAATCTGAGATGACTGAA+AGG | - | chr8.4:24542372-24542391 | None:intergenic | 45.0% |
| ! | GAGAGAAGTATGAACATGGG+CGG | + | chr8.4:24544411-24544430 | MS.gene46335:intron | 45.0% |
| ! | GAGTCATTGGTTGAACCACT+GGG | - | chr8.4:24545483-24545502 | None:intergenic | 45.0% |
| ! | GCGTTTTTGTCGTGATTTCC+AGG | + | chr8.4:24541899-24541918 | MS.gene46335:intron | 45.0% |
| ! | TGAGTCATTGGTTGAACCAC+TGG | - | chr8.4:24545484-24545503 | None:intergenic | 45.0% |
| ! | TGGTGATGCTACTGCTATCA+GGG | + | chr8.4:24543157-24543176 | MS.gene46335:CDS | 45.0% |
| !! | AGGGTAGAAGCAAAAGTGTC+AGG | + | chr8.4:24543176-24543195 | MS.gene46335:CDS | 45.0% |
| !! | CATCGACTCAGCAATACTAC+TGG | - | chr8.4:24545512-24545531 | None:intergenic | 45.0% |
| !! | GGGTAGAAGCAAAAGTGTCA+GGG | + | chr8.4:24543177-24543196 | MS.gene46335:CDS | 45.0% |
| !! | GGGTTTGGGTTGTCAAAAGA+CGG | - | chr8.4:24542392-24542411 | None:intergenic | 45.0% |
| !! | TTCTCACCGGTTCTATTGCA+TGG | - | chr8.4:24544704-24544723 | None:intergenic | 45.0% |
| !! | TTGGTGATGCTACTGCTATC+AGG | + | chr8.4:24543156-24543175 | MS.gene46335:CDS | 45.0% |
| !!! | AAACGTTTTGGTTACCGAGC+TGG | - | chr8.4:24545589-24545608 | None:intergenic | 45.0% |
| !!! | CGGTTTTTTTCGAGTCGTTC+CGG | - | chr8.4:24544727-24544746 | None:intergenic | 45.0% |
| !!! | TTTTAAAACCCGGACCAGAC+CGG | + | chr8.4:24544615-24544634 | MS.gene46335:intron | 45.0% |
| !!! | AAATTTAATTTTTAAAAATC+TGG | - | chr8.4:24543808-24543827 | None:intergenic | 5.0% |
| !!! | AAATTTTTTTTTATTTTTTG+GGG | + | chr8.4:24543941-24543960 | MS.gene46335:intron | 5.0% |
| !!! | ATTTTCAAAATTTTAAAAAA+AGG | - | chr8.4:24543859-24543878 | None:intergenic | 5.0% |
| ACTCGTCCAGAATCTACGCA+TGG | + | chr8.4:24546521-24546540 | MS.gene46335:CDS | 50.0% | |
| ATGAACATGGGCGGATCCAT+GGG | + | chr8.4:24544420-24544439 | MS.gene46335:intron | 50.0% | |
| ATGCTGCCATGCGTAGATTC+TGG | - | chr8.4:24546530-24546549 | None:intergenic | 50.0% | |
| CGGATCCATGGGTTCAATTG+GGG | + | chr8.4:24544431-24544450 | MS.gene46335:intron | 50.0% | |
| CGGTTTAACCAATGACCCAG+TGG | + | chr8.4:24545465-24545484 | MS.gene46335:intron | 50.0% | |
| CTACTGGGTCACTGAGTCAT+TGG | - | chr8.4:24545496-24545515 | None:intergenic | 50.0% | |
| GCAATAGAACCGGTGAGAAC+CGG | + | chr8.4:24544705-24544724 | MS.gene46335:intron | 50.0% | |
| GCGGATCCATGGGTTCAATT+GGG | + | chr8.4:24544430-24544449 | MS.gene46335:intron | 50.0% | |
| GGGGTGCAAAATCAGAAAGG+GGG | + | chr8.4:24543960-24543979 | MS.gene46335:intron | 50.0% | |
| GGGGTGCAAAATCAGAAAGG+GGG | - | chr8.4:24543979-24543960 | None:intergenic | 50.0% | |
| GGGGTGCAAAATCGCACAAT+TGG | + | chr8.4:24544020-24544039 | MS.gene46335:intron | 50.0% | |
| GGGGTGCAAAATCGCACAAT+TGG | - | chr8.4:24544039-24544020 | None:intergenic | 50.0% | |
| GTAAAAACCGGTGACTCGAC+CGG | + | chr8.4:24544747-24544766 | MS.gene46335:intron | 50.0% | |
| GTAGATTAGGCCGGATGACT+CGG | - | chr8.4:24545369-24545388 | None:intergenic | 50.0% | |
| TATGAACATGGGCGGATCCA+TGG | + | chr8.4:24544419-24544438 | MS.gene46335:intron | 50.0% | |
| TCAAATGTGAGGGAGGTTGG+CGG | + | chr8.4:24544997-24545016 | MS.gene46335:intron | 50.0% | |
| TCTGTTCTCTCTTCTCTCCC+TGG | - | chr8.4:24544836-24544855 | None:intergenic | 50.0% | |
| TGGTTGAACCACTGGGTCAT+TGG | - | chr8.4:24545476-24545495 | None:intergenic | 50.0% | |
| ! | GAACTTGCTTGATGCTGACG+TGG | + | chr8.4:24542118-24542137 | MS.gene46335:CDS | 50.0% |
| ! | TTTCCGTGTGGTTGGTCACT+TGG | + | chr8.4:24541831-24541850 | MS.gene46335:intron | 50.0% |
| !! | TTTTGGTTACCGAGCTGGCA+TGG | - | chr8.4:24545584-24545603 | None:intergenic | 50.0% |
| !!! | GTCGAGTCACCGGTTTTTAC+CGG | - | chr8.4:24544747-24544766 | None:intergenic | 50.0% |
| ACCAACCACACGGAAACAGG+AGG | - | chr8.4:24541827-24541846 | None:intergenic | 55.0% | |
| CCGTGAACCGGTGATATGTC+CGG | + | chr8.4:24544656-24544675 | MS.gene46335:intron | 55.0% | |
| GCTCGAACCGGACATATCAC+CGG | - | chr8.4:24544666-24544685 | None:intergenic | 55.0% | |
| GCTGTCCCCAATTGAACCCA+TGG | - | chr8.4:24544439-24544458 | None:intergenic | 55.0% | |
| GGCGGATCCATGGGTTCAAT+TGG | + | chr8.4:24544429-24544448 | MS.gene46335:intron | 55.0% | |
| GGCGGCTACTCAAATGAGAG+AGG | + | chr8.4:24545015-24545034 | MS.gene46335:intron | 55.0% | |
| GTGACCAACCACACGGAAAC+AGG | - | chr8.4:24541830-24541849 | None:intergenic | 55.0% | |
| TCCTCCTGTTTCCGTGTGGT+TGG | + | chr8.4:24541823-24541842 | MS.gene46335:intron | 55.0% | |
| ! | GGCTAGTGCCATTGCCTTTG+AGG | + | chr8.4:24542166-24542185 | MS.gene46335:CDS | 55.0% |
| ! | GTCCGGTTCGAGCTAAGCAA+TGG | + | chr8.4:24544673-24544692 | MS.gene46335:intron | 55.0% |
| !! | ACCGGTTCGGTTCTCCAAAC+CGG | - | chr8.4:24544769-24544788 | None:intergenic | 55.0% |
| !! | ACCGGTTTGGAGAACCGAAC+CGG | + | chr8.4:24544765-24544784 | MS.gene46335:intron | 55.0% |
| !! | CCGGACATATCACCGGTTCA+CGG | - | chr8.4:24544659-24544678 | None:intergenic | 55.0% |
| AACCGGTGACTCGACCGGTT+TGG | + | chr8.4:24544752-24544771 | MS.gene46335:intron | 60.0% | |
| CGAGTCGTTCCGGTTCTCAC+CGG | - | chr8.4:24544717-24544736 | None:intergenic | 60.0% | |
| CGGATCCTCCTGTTTCCGTG+TGG | + | chr8.4:24541819-24541838 | MS.gene46335:intron | 60.0% | |
| CTCCAAACCGGTCGAGTCAC+CGG | - | chr8.4:24544757-24544776 | None:intergenic | 60.0% | |
| AAAACCCGGACCAGACCGGC+CGG | + | chr8.4:24544619-24544638 | MS.gene46335:intron | 65.0% | |
| ACCAGACCGGCCGGTTGAAC+CGG | + | chr8.4:24544628-24544647 | MS.gene46335:intron | 65.0% | |
| GAACCGGTCGGACCGTGAAC+CGG | + | chr8.4:24544644-24544663 | MS.gene46335:intron | 65.0% | |
| TTCAACCGGCCGGTCTGGTC+CGG | - | chr8.4:24544627-24544646 | None:intergenic | 65.0% | |
| ! | CACGGTCCGACCGGTTCAAC+CGG | - | chr8.4:24544641-24544660 | None:intergenic | 65.0% |
| !! | TCACCGGTTCACGGTCCGAC+CGG | - | chr8.4:24544650-24544669 | None:intergenic | 65.0% |
| GACCGGCCGGTTGAACCGGT+CGG | + | chr8.4:24544632-24544651 | MS.gene46335:intron | 70.0% | |
| TCAACCGGCCGGTCTGGTCC+GGG | - | chr8.4:24544626-24544645 | None:intergenic | 70.0% | |
| ! | ACCGGTTCAACCGGCCGGTC+TGG | - | chr8.4:24544632-24544651 | None:intergenic | 70.0% |
| ! | GTCCGACCGGTTCAACCGGC+CGG | - | chr8.4:24544637-24544656 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 24541621 | 24546569 | 24541621 | ID=MS.gene46335 |
| chr8.4 | mRNA | 24541621 | 24546569 | 24541621 | ID=MS.gene46335.t1;Parent=MS.gene46335 |
| chr8.4 | exon | 24541621 | 24541683 | 24541621 | ID=MS.gene46335.t1.exon1;Parent=MS.gene46335.t1 |
| chr8.4 | CDS | 24541621 | 24541683 | 24541621 | ID=cds.MS.gene46335.t1;Parent=MS.gene46335.t1 |
| chr8.4 | exon | 24542074 | 24542664 | 24542074 | ID=MS.gene46335.t1.exon2;Parent=MS.gene46335.t1 |
| chr8.4 | CDS | 24542074 | 24542664 | 24542074 | ID=cds.MS.gene46335.t1;Parent=MS.gene46335.t1 |
| chr8.4 | exon | 24543002 | 24543349 | 24543002 | ID=MS.gene46335.t1.exon3;Parent=MS.gene46335.t1 |
| chr8.4 | CDS | 24543002 | 24543349 | 24543002 | ID=cds.MS.gene46335.t1;Parent=MS.gene46335.t1 |
| chr8.4 | exon | 24546489 | 24546569 | 24546489 | ID=MS.gene46335.t1.exon4;Parent=MS.gene46335.t1 |
| chr8.4 | CDS | 24546489 | 24546569 | 24546489 | ID=cds.MS.gene46335.t1;Parent=MS.gene46335.t1 |
| Gene Sequence |
| Protein sequence |
