Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46425.t1 | KEH40804.1 | 78 | 250 | 50 | 3 | 7 | 253 | 156 | 403 | 1.30E-107 | 399.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46425.t1 | Q2R9D2 | 29.5 | 129 | 81 | 4 | 12 | 132 | 263 | 389 | 2.0e-06 | 54.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46425.t1 | A0A072VFJ7 | 78.0 | 250 | 50 | 3 | 7 | 253 | 156 | 403 | 9.7e-108 | 399.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene46425.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46425.t1 | MTR_1g035570 | 77.381 | 252 | 52 | 3 | 7 | 255 | 156 | 405 | 3.72e-139 | 398 |
| MS.gene46425.t1 | MTR_1g035490 | 68.889 | 270 | 52 | 5 | 1 | 246 | 69 | 330 | 2.00e-126 | 363 |
| MS.gene46425.t1 | MTR_1g035620 | 45.113 | 266 | 112 | 10 | 7 | 244 | 150 | 409 | 2.09e-57 | 189 |
| MS.gene46425.t1 | MTR_1g050845 | 43.777 | 233 | 100 | 9 | 6 | 211 | 136 | 364 | 7.33e-40 | 147 |
| MS.gene46425.t1 | MTR_6g061070 | 33.904 | 292 | 140 | 8 | 5 | 243 | 178 | 469 | 4.82e-39 | 142 |
| MS.gene46425.t1 | MTR_1g035640 | 48.175 | 137 | 71 | 0 | 1 | 137 | 145 | 281 | 4.13e-38 | 139 |
| MS.gene46425.t1 | MTR_1g035640 | 39.062 | 128 | 50 | 2 | 118 | 245 | 366 | 465 | 5.22e-17 | 80.9 |
| MS.gene46425.t1 | MTR_1g108780 | 24.752 | 303 | 139 | 8 | 7 | 243 | 177 | 456 | 1.99e-18 | 85.1 |
| MS.gene46425.t1 | MTR_1g035520 | 39.091 | 110 | 60 | 3 | 141 | 243 | 273 | 382 | 6.19e-16 | 77.4 |
| MS.gene46425.t1 | MTR_5g044670 | 32.456 | 114 | 72 | 3 | 36 | 148 | 204 | 313 | 2.19e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAGGTTGATTCGTTTC+TGG | 0.111519 | 1.2:-44138209 | None:intergenic |
| ATTATCTGTTTGTTCTAATA+AGG | 0.215815 | 1.2:+44139257 | MS.gene46425:CDS |
| GACATTATAATTTCAAAATA+AGG | 0.216590 | 1.2:-44137835 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.236326 | 1.2:-44138172 | None:intergenic |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1.2:+44139056 | MS.gene46425:CDS |
| ACCACTCGTAAGAGAGAAAA+AGG | 0.287185 | 1.2:-44139688 | None:intergenic |
| TTAAAGGGACTGCAACAATA+AGG | 0.291725 | 1.2:+44138002 | MS.gene46425:CDS |
| TTATTAGAACAAACAGATAA+TGG | 0.369349 | 1.2:-44139255 | None:intergenic |
| CTGCAGATTCAGTAAAGGTT+GGG | 0.409562 | 1.2:+44139128 | MS.gene46425:CDS |
| TAAAGGGACTGCAACAATAA+GGG | 0.414381 | 1.2:+44138003 | MS.gene46425:CDS |
| GCATAAAACATTCAAGGTTA+TGG | 0.414778 | 1.2:+44138880 | MS.gene46425:CDS |
| CGATTAAAGCTTCAGATGTT+GGG | 0.416702 | 1.2:-44137792 | None:intergenic |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.426567 | 1.2:+44139162 | MS.gene46425:CDS |
| AAAACCTAGGAATTTCTTTG+AGG | 0.431350 | 1.2:-44138224 | None:intergenic |
| TTACGCCAATGGTTATTACT+TGG | 0.435703 | 1.2:+44137864 | MS.gene46425:CDS |
| ACCAAAGGAGTTTATGAAAA+GGG | 0.442898 | 1.2:+44139023 | MS.gene46425:CDS |
| AAGTATTATGAGAGTATTTG+TGG | 0.445350 | 1.2:+44139105 | MS.gene46425:CDS |
| TGTTCTCTTGAAAATATACT+TGG | 0.449633 | 1.2:-44137968 | None:intergenic |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1.2:+44139057 | MS.gene46425:CDS |
| TCGATTAAAGCTTCAGATGT+TGG | 0.454021 | 1.2:-44137793 | None:intergenic |
| TCAACCTCAAAGAAATTCCT+AGG | 0.461027 | 1.2:+44138220 | MS.gene46425:CDS |
| CAAAGTAGCCATGGTGAAGA+AGG | 0.465707 | 1.2:+44137759 | MS.gene46425:CDS |
| ATACAGGATCATAGTTATTG+AGG | 0.485707 | 1.2:-44139591 | None:intergenic |
| GGACTCTGGAAGTGAGTTTG+AGG | 0.495977 | 1.2:+44138038 | MS.gene46425:CDS |
| GCAAATTTGAGATGATTCAA+AGG | 0.505985 | 1.2:+44138146 | MS.gene46425:CDS |
| GATGGAGCATAAAACATTCA+AGG | 0.521684 | 1.2:+44138874 | MS.gene46425:CDS |
| CAATAAGGGTTGGTAAAGAA+AGG | 0.522250 | 1.2:+44138017 | MS.gene46425:CDS |
| TACCAAAGGAGTTTATGAAA+AGG | 0.523215 | 1.2:+44139022 | MS.gene46425:CDS |
| GGGATGTCATGAAAATATTG+TGG | 0.531604 | 1.2:+44139044 | MS.gene46425:CDS |
| TGTGGCTGCAGATTCAGTAA+AGG | 0.538766 | 1.2:+44139123 | MS.gene46425:CDS |
| GCTGCAGATTCAGTAAAGGT+TGG | 0.545755 | 1.2:+44139127 | MS.gene46425:CDS |
| GTATTTGCAGGGTGTACCAA+AGG | 0.558528 | 1.2:+44139008 | MS.gene46425:intron |
| ACTTACCAAGTAATAACCAT+TGG | 0.568490 | 1.2:-44137869 | None:intergenic |
| TACAAAAGGTCGTGATGTGA+TGG | 0.575558 | 1.2:+44138856 | MS.gene46425:intron |
| TGCAGATTCAGTAAAGGTTG+GGG | 0.578364 | 1.2:+44139129 | MS.gene46425:CDS |
| CCAAAGGAGTTTATGAAAAG+GGG | 0.581936 | 1.2:+44139024 | MS.gene46425:CDS |
| TATGGTGAAGAATAGAGTCC+CGG | 0.582585 | 1.2:+44138898 | MS.gene46425:CDS |
| GGTTGGTAAAGAAAGGACTC+TGG | 0.588239 | 1.2:+44138024 | MS.gene46425:CDS |
| AATCTTGTATGAGTGGTGGT+TGG | 0.588690 | 1.2:+44138080 | MS.gene46425:CDS |
| GGGACTGCAACAATAAGGGT+TGG | 0.589089 | 1.2:+44138007 | MS.gene46425:CDS |
| ATGTCACATACTTACGCCAA+TGG | 0.590674 | 1.2:+44137853 | MS.gene46425:CDS |
| AGGTAGTAACAAAGTAGCCA+TGG | 0.597558 | 1.2:+44137750 | MS.gene46425:intron |
| ATTTATGAAAGAATGCAAAG+TGG | 0.609427 | 1.2:+44139155 | MS.gene46425:CDS |
| TGAAAATGGGGAGAAAGTCA+TGG | 0.631530 | 1.2:+44139070 | MS.gene46425:CDS |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1.2:+44139058 | MS.gene46425:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATTATTTCAAATTCA+CGG | - | chr1.2:44138637-44138656 | None:intergenic | 10.0% |
| !!! | AAATAATCTTTAAATTTTTC+AGG | + | chr1.2:44137730-44137749 | MS.gene46425:intron | 10.0% |
| !!! | ATAGTTTTTTTTTTTTTTGA+AGG | - | chr1.2:44139620-44139639 | None:intergenic | 10.0% |
| !!! | CAAATATATCTATATTTTTT+GGG | + | chr1.2:44138786-44138805 | MS.gene46425:intron | 10.0% |
| !!! | TATGATAAACAAAATAATTT+TGG | + | chr1.2:44137661-44137680 | MS.gene46425:intron | 10.0% |
| !!! | TCAAATATATCTATATTTTT+TGG | + | chr1.2:44138785-44138804 | MS.gene46425:intron | 10.0% |
| !!! | TTAGATTTTATTATTGTAAA+GGG | + | chr1.2:44138464-44138483 | MS.gene46425:intron | 10.0% |
| !!! | TTCTTTTTTAGTTTTTTATT+TGG | + | chr1.2:44138254-44138273 | MS.gene46425:intron | 10.0% |
| !!! | TTTAGATTTTATTATTGTAA+AGG | + | chr1.2:44138463-44138482 | MS.gene46425:intron | 10.0% |
| !!! | TTTATTTGTTTTTTTTTTGA+AGG | + | chr1.2:44138656-44138675 | MS.gene46425:intron | 10.0% |
| !! | AAAATATTACAAACAATCAT+AGG | - | chr1.2:44139397-44139416 | None:intergenic | 15.0% |
| !! | AAATATTACAAACAATCATA+GGG | - | chr1.2:44139396-44139415 | None:intergenic | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr1.2:44138771-44138790 | None:intergenic | 15.0% |
| !! | GACATTATAATTTCAAAATA+AGG | - | chr1.2:44137838-44137857 | None:intergenic | 15.0% |
| !! | TATTATTATTTCAAATTCAC+GGG | - | chr1.2:44138636-44138655 | None:intergenic | 15.0% |
| !!! | AAACTTATGAATGATTTTTA+TGG | + | chr1.2:44138560-44138579 | MS.gene46425:intron | 15.0% |
| !!! | ATTACTAATTTACTAGATTT+TGG | + | chr1.2:44137424-44137443 | MS.gene46425:intron | 15.0% |
| !!! | GTATTTCAAATTTAAGATTA+AGG | - | chr1.2:44138614-44138633 | None:intergenic | 15.0% |
| !!! | TGATTGTTTGTAATATTTTT+TGG | + | chr1.2:44139398-44139417 | MS.gene46425:intron | 15.0% |
| !! | AGGATTAATTACATCAAATA+TGG | + | chr1.2:44138922-44138941 | MS.gene46425:intron | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1.2:44138175-44138194 | None:intergenic | 20.0% |
| !! | ATTATCTGTTTGTTCTAATA+AGG | + | chr1.2:44139257-44139276 | MS.gene46425:CDS | 20.0% |
| !! | TTATTAGAACAAACAGATAA+TGG | - | chr1.2:44139258-44139277 | None:intergenic | 20.0% |
| !!! | AACACTTGAACAATTTTAAA+GGG | + | chr1.2:44137987-44138006 | MS.gene46425:CDS | 20.0% |
| !!! | AATTTTTCATTTGTATTTGC+AGG | + | chr1.2:44138996-44139015 | MS.gene46425:intron | 20.0% |
| !!! | ACTTTTTAAGAGTTATTCAA+GGG | + | chr1.2:44137508-44137527 | MS.gene46425:intron | 20.0% |
| !!! | ATTTTTCATTTGTATTTGCA+GGG | + | chr1.2:44138997-44139016 | MS.gene46425:intron | 20.0% |
| !!! | CAAGAAAATTTACTTTTGAA+TGG | - | chr1.2:44138415-44138434 | None:intergenic | 20.0% |
| !!! | TACTTTTTAAGAGTTATTCA+AGG | + | chr1.2:44137507-44137526 | MS.gene46425:intron | 20.0% |
| !!! | TCAAAAGTAAATTTTCTTGA+GGG | + | chr1.2:44138416-44138435 | MS.gene46425:intron | 20.0% |
| !!! | TTCAAAAGTAAATTTTCTTG+AGG | + | chr1.2:44138415-44138434 | MS.gene46425:intron | 20.0% |
| ! | AAAGAAAGAAAGAAAAACCT+AGG | - | chr1.2:44138240-44138259 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | + | chr1.2:44139056-44139075 | MS.gene46425:CDS | 25.0% |
| ! | AAGAAAAAATCTTGTATGAG+TGG | + | chr1.2:44138073-44138092 | MS.gene46425:CDS | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | + | chr1.2:44139057-44139076 | MS.gene46425:CDS | 25.0% |
| ! | ATCATAGGGCAAAAATTTAA+AGG | - | chr1.2:44139382-44139401 | None:intergenic | 25.0% |
| ! | ATTTATGAAAGAATGCAAAG+TGG | + | chr1.2:44139155-44139174 | MS.gene46425:CDS | 25.0% |
| ! | TGTTCTCTTGAAAATATACT+TGG | - | chr1.2:44137971-44137990 | None:intergenic | 25.0% |
| ! | TTTGATGTAATTAATCCTAC+CGG | - | chr1.2:44138920-44138939 | None:intergenic | 25.0% |
| !! | GAACACTTGAACAATTTTAA+AGG | + | chr1.2:44137986-44138005 | MS.gene46425:CDS | 25.0% |
| !! | GCTTTAAATCAATTTCTAAC+TGG | + | chr1.2:44139480-44139499 | MS.gene46425:intron | 25.0% |
| !! | GTTTTTGATGTTTCAATTGA+AGG | + | chr1.2:44139225-44139244 | MS.gene46425:CDS | 25.0% |
| !! | TAAACCATTATTTGAAACAG+TGG | + | chr1.2:44137942-44137961 | MS.gene46425:intron | 25.0% |
| !! | TATTTCTTTTATCCATGACA+AGG | + | chr1.2:44138332-44138351 | MS.gene46425:intron | 25.0% |
| !! | TGAATGATTTTTATGGTTCT+TGG | + | chr1.2:44138567-44138586 | MS.gene46425:intron | 25.0% |
| !!! | AACTTTTTGATAGTTAGTGA+TGG | + | chr1.2:44138703-44138722 | MS.gene46425:intron | 25.0% |
| !!! | AAGTATTATGAGAGTATTTG+TGG | + | chr1.2:44139105-44139124 | MS.gene46425:CDS | 25.0% |
| !!! | TGAGTTTTCTCTCTTTATTT+TGG | + | chr1.2:44137396-44137415 | MS.gene46425:intron | 25.0% |
| !!! | TTGCAATTTTTTTGTCTGAA+AGG | + | chr1.2:44137535-44137554 | MS.gene46425:intron | 25.0% |
| !!! | TTTTTTTTGAAGGAACATAC+AGG | - | chr1.2:44139610-44139629 | None:intergenic | 25.0% |
| AAAAAATCTTGTATGAGTGG+TGG | + | chr1.2:44138076-44138095 | MS.gene46425:CDS | 30.0% | |
| AAAACCTAGGAATTTCTTTG+AGG | - | chr1.2:44138227-44138246 | None:intergenic | 30.0% | |
| ACCAAAGGAGTTTATGAAAA+GGG | + | chr1.2:44139023-44139042 | MS.gene46425:CDS | 30.0% | |
| ACTTACCAAGTAATAACCAT+TGG | - | chr1.2:44137872-44137891 | None:intergenic | 30.0% | |
| AGAAAAAGGAGAAATCAACA+AGG | - | chr1.2:44139677-44139696 | None:intergenic | 30.0% | |
| ATACAGGATCATAGTTATTG+AGG | - | chr1.2:44139594-44139613 | None:intergenic | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | + | chr1.2:44139058-44139077 | MS.gene46425:CDS | 30.0% | |
| ATCCATGACAAGGTTATAAA+GGG | + | chr1.2:44138342-44138361 | MS.gene46425:intron | 30.0% | |
| ATGAACTATATGCTACATAC+AGG | - | chr1.2:44139646-44139665 | None:intergenic | 30.0% | |
| GAAAAAGGAGAAATCAACAA+GGG | - | chr1.2:44139676-44139695 | None:intergenic | 30.0% | |
| GCATAAAACATTCAAGGTTA+TGG | + | chr1.2:44138880-44138899 | MS.gene46425:CDS | 30.0% | |
| GTATCCACTGTTTCAAATAA+TGG | - | chr1.2:44137949-44137968 | None:intergenic | 30.0% | |
| TACCAAAGGAGTTTATGAAA+AGG | + | chr1.2:44139022-44139041 | MS.gene46425:CDS | 30.0% | |
| TATCCATGACAAGGTTATAA+AGG | + | chr1.2:44138341-44138360 | MS.gene46425:intron | 30.0% | |
| TGTGTTTATGCATGTACAAA+AGG | + | chr1.2:44138842-44138861 | MS.gene46425:intron | 30.0% | |
| TTGATGTAATTAATCCTACC+GGG | - | chr1.2:44138919-44138938 | None:intergenic | 30.0% | |
| ! | GCAAATTTGAGATGATTCAA+AGG | + | chr1.2:44138146-44138165 | MS.gene46425:CDS | 30.0% |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr1.2:44139162-44139181 | MS.gene46425:CDS | 35.0% | |
| AATTTCTAACTGGACTGAGT+AGG | + | chr1.2:44139490-44139509 | MS.gene46425:intron | 35.0% | |
| ACTACCCAACAAAAATTCTC+AGG | + | chr1.2:44137373-44137392 | MS.gene46425:CDS | 35.0% | |
| ATCCCTTTATAACCTTGTCA+TGG | - | chr1.2:44138347-44138366 | None:intergenic | 35.0% | |
| CCAAAGGAGTTTATGAAAAG+GGG | + | chr1.2:44139024-44139043 | MS.gene46425:CDS | 35.0% | |
| CGATTAAAGCTTCAGATGTT+GGG | - | chr1.2:44137795-44137814 | None:intergenic | 35.0% | |
| CGCAACATATATTAGTGACT+TGG | - | chr1.2:44139432-44139451 | None:intergenic | 35.0% | |
| GATGGAGCATAAAACATTCA+AGG | + | chr1.2:44138874-44138893 | MS.gene46425:CDS | 35.0% | |
| GGGATGTCATGAAAATATTG+TGG | + | chr1.2:44139044-44139063 | MS.gene46425:CDS | 35.0% | |
| TAAAGGGACTGCAACAATAA+GGG | + | chr1.2:44138003-44138022 | MS.gene46425:CDS | 35.0% | |
| TCAACCTCAAAGAAATTCCT+AGG | + | chr1.2:44138220-44138239 | MS.gene46425:CDS | 35.0% | |
| TCGATTAAAGCTTCAGATGT+TGG | - | chr1.2:44137796-44137815 | None:intergenic | 35.0% | |
| TTAAAGGGACTGCAACAATA+AGG | + | chr1.2:44138002-44138021 | MS.gene46425:CDS | 35.0% | |
| TTACGCCAATGGTTATTACT+TGG | + | chr1.2:44137864-44137883 | MS.gene46425:CDS | 35.0% | |
| ! | ACTCACCTGAGAATTTTTGT+TGG | - | chr1.2:44137381-44137400 | None:intergenic | 35.0% |
| ! | CTCACCTGAGAATTTTTGTT+GGG | - | chr1.2:44137380-44137399 | None:intergenic | 35.0% |
| ! | TGAGAATTTTTGTTGGGTAG+TGG | - | chr1.2:44137374-44137393 | None:intergenic | 35.0% |
| !! | CAATAAGGGTTGGTAAAGAA+AGG | + | chr1.2:44138017-44138036 | MS.gene46425:CDS | 35.0% |
| AAGACATTGCAGGAACTTCT+AGG | + | chr1.2:44138387-44138406 | MS.gene46425:intron | 40.0% | |
| AATCTTGTATGAGTGGTGGT+TGG | + | chr1.2:44138080-44138099 | MS.gene46425:CDS | 40.0% | |
| ACCACTCGTAAGAGAGAAAA+AGG | - | chr1.2:44139691-44139710 | None:intergenic | 40.0% | |
| AGGTAGTAACAAAGTAGCCA+TGG | + | chr1.2:44137750-44137769 | MS.gene46425:intron | 40.0% | |
| ATGTCACATACTTACGCCAA+TGG | + | chr1.2:44137853-44137872 | MS.gene46425:CDS | 40.0% | |
| CTGCAGATTCAGTAAAGGTT+GGG | + | chr1.2:44139128-44139147 | MS.gene46425:CDS | 40.0% | |
| GATCTCTTGTGGTGTAAAGA+AGG | + | chr1.2:44138364-44138383 | MS.gene46425:intron | 40.0% | |
| GGTTATAAAGGGATCTCTTG+TGG | + | chr1.2:44138353-44138372 | MS.gene46425:intron | 40.0% | |
| GTAAAGAAGGAAGACATTGC+AGG | + | chr1.2:44138377-44138396 | MS.gene46425:intron | 40.0% | |
| TACAAAAGGTCGTGATGTGA+TGG | + | chr1.2:44138856-44138875 | MS.gene46425:intron | 40.0% | |
| TATGGTGAAGAATAGAGTCC+CGG | + | chr1.2:44138898-44138917 | MS.gene46425:CDS | 40.0% | |
| TGAAAATGGGGAGAAAGTCA+TGG | + | chr1.2:44139070-44139089 | MS.gene46425:CDS | 40.0% | |
| TGCAGATTCAGTAAAGGTTG+GGG | + | chr1.2:44139129-44139148 | MS.gene46425:CDS | 40.0% | |
| ! | CCCCTTTTCATAAACTCCTT+TGG | - | chr1.2:44139027-44139046 | None:intergenic | 40.0% |
| ! | TCCTTTTTCTCTCTTACGAG+TGG | + | chr1.2:44139687-44139706 | MS.gene46425:CDS | 40.0% |
| !! | CTTTGAGGTTGATTCGTTTC+TGG | - | chr1.2:44138212-44138231 | None:intergenic | 40.0% |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | - | chr1.2:44137770-44137789 | None:intergenic | 40.0% |
| CAAAGTAGCCATGGTGAAGA+AGG | + | chr1.2:44137759-44137778 | MS.gene46425:CDS | 45.0% | |
| GCTGCAGATTCAGTAAAGGT+TGG | + | chr1.2:44139127-44139146 | MS.gene46425:CDS | 45.0% | |
| GTATTTGCAGGGTGTACCAA+AGG | + | chr1.2:44139008-44139027 | MS.gene46425:intron | 45.0% | |
| TGTGGCTGCAGATTCAGTAA+AGG | + | chr1.2:44139123-44139142 | MS.gene46425:CDS | 45.0% | |
| !! | GGTTGGTAAAGAAAGGACTC+TGG | + | chr1.2:44138024-44138043 | MS.gene46425:CDS | 45.0% |
| !! | TATATATATATATTTGAATT+TGG | + | chr1.2:44138532-44138551 | MS.gene46425:intron | 5.0% |
| !!! | AAAAAAAATCTAATTTTTAT+AGG | - | chr1.2:44137618-44137637 | None:intergenic | 5.0% |
| !!! | TAAAAATTAGATTTTTTTTA+AGG | + | chr1.2:44137619-44137638 | MS.gene46425:intron | 5.0% |
| GGGACTGCAACAATAAGGGT+TGG | + | chr1.2:44138007-44138026 | MS.gene46425:CDS | 50.0% | |
| GTGAAGAATAGAGTCCCGGT+AGG | + | chr1.2:44138902-44138921 | MS.gene46425:intron | 50.0% | |
| ! | GGACTCTGGAAGTGAGTTTG+AGG | + | chr1.2:44138038-44138057 | MS.gene46425:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 44137361 | 44139713 | 44137361 | ID=MS.gene46425 |
| chr1.2 | mRNA | 44137361 | 44139713 | 44137361 | ID=MS.gene46425.t1;Parent=MS.gene46425 |
| chr1.2 | exon | 44137361 | 44137394 | 44137361 | ID=MS.gene46425.t1.exon1;Parent=MS.gene46425.t1 |
| chr1.2 | CDS | 44137361 | 44137394 | 44137361 | ID=cds.MS.gene46425.t1;Parent=MS.gene46425.t1 |
| chr1.2 | exon | 44137752 | 44137885 | 44137752 | ID=MS.gene46425.t1.exon2;Parent=MS.gene46425.t1 |
| chr1.2 | CDS | 44137752 | 44137885 | 44137752 | ID=cds.MS.gene46425.t1;Parent=MS.gene46425.t1 |
| chr1.2 | exon | 44137962 | 44138241 | 44137962 | ID=MS.gene46425.t1.exon3;Parent=MS.gene46425.t1 |
| chr1.2 | CDS | 44137962 | 44138241 | 44137962 | ID=cds.MS.gene46425.t1;Parent=MS.gene46425.t1 |
| chr1.2 | exon | 44138864 | 44138919 | 44138864 | ID=MS.gene46425.t1.exon4;Parent=MS.gene46425.t1 |
| chr1.2 | CDS | 44138864 | 44138919 | 44138864 | ID=cds.MS.gene46425.t1;Parent=MS.gene46425.t1 |
| chr1.2 | exon | 44139018 | 44139278 | 44139018 | ID=MS.gene46425.t1.exon5;Parent=MS.gene46425.t1 |
| chr1.2 | CDS | 44139018 | 44139278 | 44139018 | ID=cds.MS.gene46425.t1;Parent=MS.gene46425.t1 |
| chr1.2 | exon | 44139589 | 44139609 | 44139589 | ID=MS.gene46425.t1.exon6;Parent=MS.gene46425.t1 |
| chr1.2 | CDS | 44139589 | 44139609 | 44139589 | ID=cds.MS.gene46425.t1;Parent=MS.gene46425.t1 |
| chr1.2 | exon | 44139654 | 44139713 | 44139654 | ID=MS.gene46425.t1.exon7;Parent=MS.gene46425.t1 |
| chr1.2 | CDS | 44139654 | 44139713 | 44139654 | ID=cds.MS.gene46425.t1;Parent=MS.gene46425.t1 |
| Gene Sequence |
| Protein sequence |
