Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46443.t1 | KEH41968.1 | 98.1 | 208 | 4 | 0 | 18 | 225 | 37 | 244 | 1.90E-118 | 435.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46443.t1 | Q9FNI3 | 71.7 | 127 | 28 | 1 | 50 | 168 | 39 | 165 | 1.1e-45 | 184.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46443.t1 | A0A072VKM7 | 98.1 | 208 | 4 | 0 | 18 | 225 | 37 | 244 | 1.4e-118 | 435.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene46443.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46443.t1 | MTR_1g058350 | 98.222 | 225 | 4 | 0 | 1 | 225 | 20 | 244 | 3.21e-170 | 472 |
MS.gene46443.t1 | MTR_7g105370 | 68.831 | 154 | 38 | 3 | 60 | 213 | 64 | 207 | 6.92e-67 | 209 |
MS.gene46443.t1 | MTR_8g023990 | 50.515 | 194 | 81 | 6 | 52 | 240 | 167 | 350 | 1.52e-48 | 167 |
MS.gene46443.t1 | MTR_5g053920 | 66.087 | 115 | 33 | 1 | 53 | 161 | 191 | 305 | 1.11e-45 | 157 |
MS.gene46443.t1 | MTR_7g117455 | 69.725 | 109 | 29 | 2 | 56 | 162 | 117 | 223 | 1.56e-45 | 158 |
MS.gene46443.t1 | MTR_1g093600 | 61.157 | 121 | 36 | 2 | 53 | 162 | 188 | 308 | 4.95e-41 | 144 |
MS.gene46443.t1 | MTR_1g116920 | 50.467 | 107 | 43 | 2 | 45 | 146 | 145 | 246 | 2.09e-28 | 109 |
MS.gene46443.t1 | MTR_7g073240 | 38.571 | 140 | 64 | 7 | 31 | 162 | 98 | 223 | 3.12e-16 | 77.4 |
MS.gene46443.t1 | MTR_4g028130 | 34.815 | 135 | 68 | 6 | 35 | 162 | 295 | 416 | 3.86e-15 | 74.7 |
MS.gene46443.t1 | MTR_4g028130 | 35.338 | 133 | 66 | 6 | 35 | 160 | 295 | 414 | 4.15e-15 | 74.7 |
MS.gene46443.t1 | MTR_5g075410 | 36.296 | 135 | 65 | 6 | 35 | 162 | 302 | 422 | 4.37e-15 | 74.7 |
MS.gene46443.t1 | MTR_3g467380 | 35.758 | 165 | 81 | 9 | 35 | 188 | 319 | 469 | 1.82e-14 | 72.8 |
MS.gene46443.t1 | MTR_2g011940 | 36.667 | 120 | 62 | 5 | 43 | 160 | 336 | 443 | 2.16e-14 | 72.8 |
MS.gene46443.t1 | MTR_2g011940 | 36.066 | 122 | 64 | 5 | 43 | 162 | 345 | 454 | 3.29e-14 | 72.0 |
MS.gene46443.t1 | MTR_4g028130 | 37.815 | 119 | 55 | 5 | 35 | 146 | 295 | 401 | 3.77e-14 | 72.0 |
MS.gene46443.t1 | MTR_2g011940 | 36.066 | 122 | 64 | 5 | 43 | 162 | 345 | 454 | 4.05e-14 | 71.6 |
MS.gene46443.t1 | MTR_8g101360 | 38.053 | 113 | 64 | 3 | 48 | 160 | 129 | 235 | 1.63e-12 | 67.0 |
MS.gene46443.t1 | MTR_2g094570 | 33.813 | 139 | 84 | 3 | 52 | 185 | 103 | 238 | 4.41e-12 | 65.9 |
MS.gene46443.t1 | MTR_1g094960 | 27.586 | 203 | 125 | 5 | 52 | 235 | 113 | 312 | 4.43e-12 | 65.9 |
MS.gene46443.t1 | MTR_4g058930 | 32.432 | 148 | 83 | 4 | 52 | 194 | 104 | 239 | 4.69e-12 | 65.9 |
MS.gene46443.t1 | MTR_4g058930 | 32.432 | 148 | 83 | 4 | 52 | 194 | 104 | 239 | 5.14e-12 | 65.5 |
MS.gene46443.t1 | MTR_2g094570 | 33.813 | 139 | 84 | 3 | 52 | 185 | 103 | 238 | 5.25e-12 | 65.5 |
MS.gene46443.t1 | MTR_2g094570 | 33.813 | 139 | 84 | 3 | 52 | 185 | 159 | 294 | 5.57e-12 | 65.5 |
MS.gene46443.t1 | MTR_2g093740 | 28.649 | 185 | 126 | 3 | 33 | 217 | 144 | 322 | 9.26e-12 | 64.7 |
MS.gene46443.t1 | MTR_2g093740 | 29.630 | 162 | 108 | 3 | 56 | 217 | 167 | 322 | 9.38e-12 | 64.7 |
MS.gene46443.t1 | MTR_2g093740 | 28.649 | 185 | 126 | 3 | 33 | 217 | 144 | 322 | 9.46e-12 | 64.7 |
MS.gene46443.t1 | MTR_3g073420 | 35.897 | 117 | 69 | 4 | 46 | 160 | 105 | 217 | 1.01e-11 | 64.7 |
MS.gene46443.t1 | MTR_4g060460 | 30.178 | 169 | 112 | 3 | 49 | 217 | 158 | 320 | 1.11e-11 | 64.7 |
MS.gene46443.t1 | MTR_4g060460 | 30.178 | 169 | 112 | 3 | 49 | 217 | 158 | 320 | 1.11e-11 | 64.7 |
MS.gene46443.t1 | MTR_2g093740 | 28.649 | 185 | 126 | 3 | 33 | 217 | 14 | 192 | 1.13e-11 | 64.3 |
MS.gene46443.t1 | MTR_2g093740 | 29.630 | 162 | 108 | 3 | 56 | 217 | 37 | 192 | 1.23e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46443.t1 | AT3G11580 | 76.471 | 119 | 19 | 2 | 52 | 161 | 24 | 142 | 2.55e-58 | 185 |
MS.gene46443.t1 | AT3G11580 | 76.471 | 119 | 19 | 2 | 52 | 161 | 24 | 142 | 2.55e-58 | 185 |
MS.gene46443.t1 | AT3G11580 | 76.471 | 119 | 19 | 2 | 52 | 161 | 24 | 142 | 2.55e-58 | 185 |
MS.gene46443.t1 | AT3G11580 | 76.471 | 119 | 19 | 2 | 52 | 161 | 24 | 142 | 8.66e-58 | 185 |
MS.gene46443.t1 | AT5G06250 | 75.000 | 120 | 22 | 1 | 50 | 161 | 39 | 158 | 1.28e-57 | 185 |
MS.gene46443.t1 | AT5G06250 | 75.000 | 120 | 22 | 1 | 50 | 161 | 39 | 158 | 1.29e-57 | 184 |
MS.gene46443.t1 | AT5G06250 | 75.000 | 120 | 22 | 1 | 50 | 161 | 39 | 158 | 1.65e-57 | 184 |
MS.gene46443.t1 | AT5G06250 | 70.000 | 130 | 31 | 1 | 50 | 171 | 39 | 168 | 2.25e-57 | 184 |
MS.gene46443.t1 | AT5G06250 | 70.000 | 130 | 31 | 1 | 50 | 171 | 39 | 168 | 2.92e-57 | 183 |
MS.gene46443.t1 | AT3G11580 | 76.471 | 119 | 19 | 2 | 52 | 161 | 24 | 142 | 1.06e-56 | 185 |
MS.gene46443.t1 | AT2G36080 | 78.571 | 112 | 23 | 1 | 51 | 161 | 32 | 143 | 5.19e-56 | 177 |
MS.gene46443.t1 | AT2G36080 | 78.571 | 112 | 23 | 1 | 51 | 161 | 32 | 143 | 5.19e-56 | 177 |
MS.gene46443.t1 | AT2G36080 | 78.571 | 112 | 23 | 1 | 51 | 161 | 32 | 143 | 1.57e-55 | 178 |
MS.gene46443.t1 | AT2G36080 | 78.571 | 112 | 23 | 1 | 51 | 161 | 32 | 143 | 1.82e-55 | 178 |
MS.gene46443.t1 | AT3G61970 | 68.468 | 111 | 34 | 1 | 52 | 161 | 18 | 128 | 5.66e-50 | 166 |
MS.gene46443.t1 | AT2G46870 | 69.912 | 113 | 29 | 2 | 52 | 161 | 30 | 140 | 4.85e-48 | 161 |
MS.gene46443.t1 | AT1G68840 | 63.934 | 122 | 44 | 0 | 42 | 163 | 173 | 294 | 5.08e-47 | 159 |
MS.gene46443.t1 | AT1G68840 | 63.934 | 122 | 44 | 0 | 42 | 163 | 173 | 294 | 5.08e-47 | 159 |
MS.gene46443.t1 | AT1G13260 | 66.087 | 115 | 38 | 1 | 54 | 168 | 185 | 298 | 1.03e-46 | 158 |
MS.gene46443.t1 | AT3G25730 | 62.097 | 124 | 45 | 2 | 54 | 175 | 180 | 303 | 1.30e-45 | 155 |
MS.gene46443.t1 | AT1G01030 | 62.185 | 119 | 40 | 2 | 46 | 161 | 45 | 161 | 5.02e-45 | 154 |
MS.gene46443.t1 | AT1G01030 | 62.185 | 119 | 40 | 2 | 46 | 161 | 45 | 161 | 5.80e-45 | 154 |
MS.gene46443.t1 | AT1G25560 | 59.375 | 128 | 46 | 1 | 53 | 174 | 191 | 318 | 4.10e-44 | 152 |
MS.gene46443.t1 | AT4G01500 | 53.906 | 128 | 46 | 2 | 44 | 162 | 23 | 146 | 5.30e-38 | 135 |
MS.gene46443.t1 | AT1G50680 | 50.000 | 98 | 40 | 1 | 56 | 144 | 156 | 253 | 6.33e-26 | 103 |
MS.gene46443.t1 | AT1G51120 | 49.474 | 95 | 42 | 1 | 56 | 144 | 177 | 271 | 2.59e-25 | 102 |
MS.gene46443.t1 | AT2G30470 | 35.664 | 143 | 79 | 6 | 56 | 192 | 294 | 429 | 9.59e-16 | 76.6 |
MS.gene46443.t1 | AT4G32010 | 31.944 | 144 | 89 | 5 | 56 | 197 | 285 | 421 | 1.46e-14 | 73.2 |
MS.gene46443.t1 | AT4G32010 | 31.944 | 144 | 89 | 5 | 56 | 197 | 281 | 417 | 1.58e-14 | 73.2 |
MS.gene46443.t1 | AT1G35240 | 33.793 | 145 | 87 | 4 | 41 | 178 | 105 | 247 | 1.21e-12 | 67.4 |
MS.gene46443.t1 | AT1G35520 | 31.707 | 164 | 96 | 5 | 29 | 178 | 86 | 247 | 2.97e-12 | 66.2 |
MS.gene46443.t1 | AT1G77850 | 36.283 | 113 | 65 | 3 | 50 | 160 | 112 | 219 | 3.21e-12 | 66.2 |
MS.gene46443.t1 | AT1G77850 | 36.283 | 113 | 65 | 3 | 50 | 160 | 112 | 219 | 3.53e-12 | 65.9 |
MS.gene46443.t1 | AT1G34310 | 31.944 | 144 | 91 | 3 | 41 | 178 | 105 | 247 | 5.21e-12 | 65.5 |
MS.gene46443.t1 | AT2G33860 | 30.000 | 160 | 106 | 3 | 56 | 215 | 158 | 311 | 3.04e-11 | 63.2 |
MS.gene46443.t1 | AT2G33860 | 30.000 | 160 | 106 | 3 | 56 | 215 | 1 | 154 | 4.37e-11 | 62.8 |
MS.gene46443.t1 | AT5G60450 | 31.288 | 163 | 103 | 4 | 56 | 217 | 152 | 306 | 4.85e-11 | 62.8 |
MS.gene46443.t1 | AT5G60450 | 31.288 | 163 | 103 | 4 | 56 | 217 | 176 | 330 | 5.07e-11 | 62.8 |
Find 51 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATTAGTCGAACCAACTTCT+TGG | 0.317183 | 1.3:-43049371 | MS.gene46443:CDS |
GGCGTTTCCGTTACTCATAT+TGG | 0.359426 | 1.3:-43049053 | MS.gene46443:CDS |
CCTACGTCAGAAGGTGTTAA+GGG | 0.377142 | 1.3:+43049198 | None:intergenic |
GGTAAGAATGAGGTTGTTAA+TGG | 0.377492 | 1.3:-43048823 | MS.gene46443:CDS |
TCCTACGTCAGAAGGTGTTA+AGG | 0.388480 | 1.3:+43049197 | None:intergenic |
CAAAGCTATGTTCTAACAAA+AGG | 0.431965 | 1.3:-43049021 | MS.gene46443:CDS |
TGATGATGATGCGCAGGATA+AGG | 0.435593 | 1.3:+43048763 | None:intergenic |
AATAAAACCCGAAGACGAAA+AGG | 0.463997 | 1.3:-43049238 | MS.gene46443:CDS |
TCAACTGGAGGAGGAGGAGT+GGG | 0.485693 | 1.3:-43048909 | MS.gene46443:CDS |
AAAGACAAACGACTCGATGC+TGG | 0.489099 | 1.3:-43048982 | MS.gene46443:CDS |
AATGAGGTTGTTAATGGTGT+AGG | 0.496825 | 1.3:-43048817 | MS.gene46443:CDS |
ACCATGGAGGTTGGTGGTGA+TGG | 0.501172 | 1.3:+43049343 | None:intergenic |
ATCAACTGGAGGAGGAGGAG+TGG | 0.505623 | 1.3:-43048910 | MS.gene46443:CDS |
AGCAGAGGGGTGGGACATCA+TGG | 0.518191 | 1.3:-43048865 | MS.gene46443:CDS |
GAGGAGTGGGGATGATCAGT+CGG | 0.525500 | 1.3:-43048896 | MS.gene46443:CDS |
CATCATGGTAAGGGTAGTGA+TGG | 0.527962 | 1.3:-43048850 | MS.gene46443:CDS |
GCTATGTTCTAACAAAAGGT+TGG | 0.532394 | 1.3:-43049017 | MS.gene46443:CDS |
TAGTAAAAGTCCTTTGCACT+CGG | 0.550197 | 1.3:+43049104 | None:intergenic |
ATGGTGTAGGGTGGTCCAGA+GGG | 0.553370 | 1.3:-43048804 | MS.gene46443:CDS |
AAGATGAGTCAGGGAAGTGT+TGG | 0.556819 | 1.3:-43049074 | MS.gene46443:CDS |
AGGGGTGGGACATCATGGTA+AGG | 0.561645 | 1.3:-43048860 | MS.gene46443:CDS |
TCCATCACCACCAACCTCCA+TGG | 0.565376 | 1.3:-43049344 | MS.gene46443:CDS |
AATGGTGTAGGGTGGTCCAG+AGG | 0.566906 | 1.3:-43048805 | MS.gene46443:CDS |
GCGGAGTCTGCTCCGCCGAG+TGG | 0.567487 | 1.3:+43049126 | None:intergenic |
CATGATCAATGTCTTCATGC+AGG | 0.570998 | 1.3:-43048724 | MS.gene46443:CDS |
GCAGACTCCGCCGAGTGCAA+AGG | 0.576404 | 1.3:-43049114 | MS.gene46443:CDS |
TACTGTTCCAATATGAGTAA+CGG | 0.578342 | 1.3:+43049046 | None:intergenic |
ATGCGCAGAATAGAACCCTC+TGG | 0.580439 | 1.3:+43048789 | None:intergenic |
GGCGTATGTTAGCAGAGGGG+TGG | 0.580643 | 1.3:-43048875 | MS.gene46443:CDS |
TGATGGAGAGACCAAGAAGT+TGG | 0.584201 | 1.3:+43049360 | None:intergenic |
GCGTATGTTAGCAGAGGGGT+GGG | 0.587165 | 1.3:-43048874 | MS.gene46443:CDS |
AGACATTGATCATGTTGGTA+TGG | 0.589887 | 1.3:+43048733 | None:intergenic |
ATGAGGTTGTTAATGGTGTA+GGG | 0.597680 | 1.3:-43048816 | MS.gene46443:CDS |
GAGAATTGAACCATGGAGGT+TGG | 0.598304 | 1.3:+43049334 | None:intergenic |
AAGACTTGATGATGATGCGC+AGG | 0.600336 | 1.3:+43048757 | None:intergenic |
TGGATTTGAGAATTGAACCA+TGG | 0.606350 | 1.3:+43049327 | None:intergenic |
TGATGGGAATGGTAAGAATG+AGG | 0.609090 | 1.3:-43048833 | MS.gene46443:CDS |
CATGAAGACATTGATCATGT+TGG | 0.609605 | 1.3:+43048728 | None:intergenic |
AGTCGGCGTATGTTAGCAGA+GGG | 0.627715 | 1.3:-43048879 | MS.gene46443:CDS |
CAGTCGGCGTATGTTAGCAG+AGG | 0.631740 | 1.3:-43048880 | MS.gene46443:CDS |
GGGGTGGGACATCATGGTAA+GGG | 0.638844 | 1.3:-43048859 | MS.gene46443:CDS |
ATCATGGTAAGGGTAGTGAT+GGG | 0.642987 | 1.3:-43048849 | MS.gene46443:CDS |
CCCTTAACACCTTCTGACGT+AGG | 0.645250 | 1.3:-43049198 | MS.gene46443:CDS |
GGTAAGGGTAGTGATGGGAA+TGG | 0.646143 | 1.3:-43048844 | MS.gene46443:CDS |
TAAAAGTCCTTTGCACTCGG+CGG | 0.651002 | 1.3:+43049107 | None:intergenic |
CAACTGGAGGAGGAGGAGTG+GGG | 0.652199 | 1.3:-43048908 | MS.gene46443:CDS |
AATTGAACCATGGAGGTTGG+TGG | 0.658505 | 1.3:+43049337 | None:intergenic |
GTTGGTTCGACTAATAACAT+CGG | 0.683554 | 1.3:+43049378 | None:intergenic |
ATTTGAGAATTGAACCATGG+AGG | 0.715955 | 1.3:+43049330 | None:intergenic |
AGGTTGTTAATGGTGTAGGG+TGG | 0.756848 | 1.3:-43048813 | MS.gene46443:CDS |
GTCGGCGTATGTTAGCAGAG+GGG | 0.766314 | 1.3:-43048878 | MS.gene46443:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTCAGCGTATTGTTTT+GGG | + | chr1.3:43048887-43048906 | None:intergenic | 25.0% |
!!! | TATTTTTCAGCGTATTGTTT+TGG | + | chr1.3:43048888-43048907 | None:intergenic | 25.0% |
CAAAGCTATGTTCTAACAAA+AGG | - | chr1.3:43049017-43049036 | MS.gene46443:CDS | 30.0% | |
TACTGTTCCAATATGAGTAA+CGG | + | chr1.3:43048995-43049014 | None:intergenic | 30.0% | |
!!! | ATGTTTTTGAGGTTGTAATG+AGG | + | chr1.3:43048747-43048766 | None:intergenic | 30.0% |
!!! | ATTGTTTTGGGATAACAAGA+CGG | + | chr1.3:43048875-43048894 | None:intergenic | 30.0% |
!!! | TAAGTTTTGAAGATGAGTCA+GGG | - | chr1.3:43048955-43048974 | MS.gene46443:CDS | 30.0% |
AATAAAACCCGAAGACGAAA+AGG | - | chr1.3:43048800-43048819 | MS.gene46443:CDS | 35.0% | |
AATGAGGTTGTTAATGGTGT+AGG | - | chr1.3:43049221-43049240 | MS.gene46443:CDS | 35.0% | |
AGACATTGATCATGTTGGTA+TGG | + | chr1.3:43049308-43049327 | None:intergenic | 35.0% | |
ATGAGGTTGTTAATGGTGTA+GGG | - | chr1.3:43049222-43049241 | MS.gene46443:CDS | 35.0% | |
ATTTGAGAATTGAACCATGG+AGG | + | chr1.3:43048711-43048730 | None:intergenic | 35.0% | |
CATGAAGACATTGATCATGT+TGG | + | chr1.3:43049313-43049332 | None:intergenic | 35.0% | |
GCTATGTTCTAACAAAAGGT+TGG | - | chr1.3:43049021-43049040 | MS.gene46443:CDS | 35.0% | |
GCTGAAAAATACTTTCCACT+CGG | - | chr1.3:43048897-43048916 | MS.gene46443:CDS | 35.0% | |
GGTAAGAATGAGGTTGTTAA+TGG | - | chr1.3:43049215-43049234 | MS.gene46443:CDS | 35.0% | |
TAGTAAAAGTCCTTTGCACT+CGG | + | chr1.3:43048937-43048956 | None:intergenic | 35.0% | |
TATTAGTCGAACCAACTTCT+TGG | - | chr1.3:43048667-43048686 | MS.gene46443:CDS | 35.0% | |
TGGATTTGAGAATTGAACCA+TGG | + | chr1.3:43048714-43048733 | None:intergenic | 35.0% | |
! | AGAGACTTTTTATCAACTGG+AGG | - | chr1.3:43049117-43049136 | MS.gene46443:CDS | 35.0% |
! | GTCAGAGACTTTTTATCAAC+TGG | - | chr1.3:43049114-43049133 | MS.gene46443:CDS | 35.0% |
! | TGTAATGAGGTGAGTTTTCA+TGG | + | chr1.3:43048734-43048753 | None:intergenic | 35.0% |
!! | ATTGATTCCTTTTCGTCTTC+GGG | + | chr1.3:43048810-43048829 | None:intergenic | 35.0% |
!! | CTTCATCTTCGATGTTTTTG+AGG | + | chr1.3:43048758-43048777 | None:intergenic | 35.0% |
!!! | CATTGATTCCTTTTCGTCTT+CGG | + | chr1.3:43048811-43048830 | None:intergenic | 35.0% |
!!! | CTAAGTTTTGAAGATGAGTC+AGG | - | chr1.3:43048954-43048973 | MS.gene46443:CDS | 35.0% |
!!! | TTCGTCTTCGGGTTTTATTA+CGG | + | chr1.3:43048799-43048818 | None:intergenic | 35.0% |
ATCATGGTAAGGGTAGTGAT+GGG | - | chr1.3:43049189-43049208 | MS.gene46443:CDS | 40.0% | |
CATGATCAATGTCTTCATGC+AGG | - | chr1.3:43049314-43049333 | MS.gene46443:CDS | 40.0% | |
GAAAAATACTTTCCACTCGG+CGG | - | chr1.3:43048900-43048919 | MS.gene46443:CDS | 40.0% | |
TGATGGGAATGGTAAGAATG+AGG | - | chr1.3:43049205-43049224 | MS.gene46443:CDS | 40.0% | |
! | GACTTTTTATCAACTGGAGG+AGG | - | chr1.3:43049120-43049139 | MS.gene46443:CDS | 40.0% |
! | TTGAGTTTTCCTACGTCAGA+AGG | + | chr1.3:43048852-43048871 | None:intergenic | 40.0% |
! | TTTTTATCAACTGGAGGAGG+AGG | - | chr1.3:43049123-43049142 | MS.gene46443:CDS | 40.0% |
AAAGACAAACGACTCGATGC+TGG | - | chr1.3:43049056-43049075 | MS.gene46443:CDS | 45.0% | |
AATTGAACCATGGAGGTTGG+TGG | + | chr1.3:43048704-43048723 | None:intergenic | 45.0% | |
AGGTTGTTAATGGTGTAGGG+TGG | - | chr1.3:43049225-43049244 | MS.gene46443:CDS | 45.0% | |
CATCATGGTAAGGGTAGTGA+TGG | - | chr1.3:43049188-43049207 | MS.gene46443:CDS | 45.0% | |
GAGAATTGAACCATGGAGGT+TGG | + | chr1.3:43048707-43048726 | None:intergenic | 45.0% | |
GGCGTTTCCGTTACTCATAT+TGG | - | chr1.3:43048985-43049004 | MS.gene46443:CDS | 45.0% | |
TAAAAGTCCTTTGCACTCGG+CGG | + | chr1.3:43048934-43048953 | None:intergenic | 45.0% | |
TGATGGAGAGACCAAGAAGT+TGG | + | chr1.3:43048681-43048700 | None:intergenic | 45.0% | |
! | AAGATGAGTCAGGGAAGTGT+TGG | - | chr1.3:43048964-43048983 | MS.gene46443:CDS | 45.0% |
! | TGATGATGATGCGCAGGATA+AGG | + | chr1.3:43049278-43049297 | None:intergenic | 45.0% |
!! | AAGACTTGATGATGATGCGC+AGG | + | chr1.3:43049284-43049303 | None:intergenic | 45.0% |
!! | CCTACGTCAGAAGGTGTTAA+GGG | + | chr1.3:43048843-43048862 | None:intergenic | 45.0% |
!! | TCCTACGTCAGAAGGTGTTA+AGG | + | chr1.3:43048844-43048863 | None:intergenic | 45.0% |
!!! | GTCTTCGGGTTTTATTACGG+TGG | + | chr1.3:43048796-43048815 | None:intergenic | 45.0% |
!!! | TTCGGGTTTTATTACGGTGG+TGG | + | chr1.3:43048793-43048812 | None:intergenic | 45.0% |
AGTCGGCGTATGTTAGCAGA+GGG | - | chr1.3:43049159-43049178 | MS.gene46443:CDS | 50.0% | |
ATGCGCAGAATAGAACCCTC+TGG | + | chr1.3:43049252-43049271 | None:intergenic | 50.0% | |
CCCTTAACACCTTCTGACGT+AGG | - | chr1.3:43048840-43048859 | MS.gene46443:CDS | 50.0% | |
! | GGTAAGGGTAGTGATGGGAA+TGG | - | chr1.3:43049194-43049213 | MS.gene46443:CDS | 50.0% |
AATGGTGTAGGGTGGTCCAG+AGG | - | chr1.3:43049233-43049252 | MS.gene46443:CDS | 55.0% | |
AGGGGTGGGACATCATGGTA+AGG | - | chr1.3:43049178-43049197 | MS.gene46443:CDS | 55.0% | |
ATCAACTGGAGGAGGAGGAG+TGG | - | chr1.3:43049128-43049147 | MS.gene46443:CDS | 55.0% | |
ATGGTGTAGGGTGGTCCAGA+GGG | - | chr1.3:43049234-43049253 | MS.gene46443:CDS | 55.0% | |
CAGTCGGCGTATGTTAGCAG+AGG | - | chr1.3:43049158-43049177 | MS.gene46443:CDS | 55.0% | |
GAGGAGTGGGGATGATCAGT+CGG | - | chr1.3:43049142-43049161 | MS.gene46443:CDS | 55.0% | |
GCGTATGTTAGCAGAGGGGT+GGG | - | chr1.3:43049164-43049183 | MS.gene46443:CDS | 55.0% | |
GGGGTGGGACATCATGGTAA+GGG | - | chr1.3:43049179-43049198 | MS.gene46443:CDS | 55.0% | |
GTCGGCGTATGTTAGCAGAG+GGG | - | chr1.3:43049160-43049179 | MS.gene46443:CDS | 55.0% | |
TCAACTGGAGGAGGAGGAGT+GGG | - | chr1.3:43049129-43049148 | MS.gene46443:CDS | 55.0% | |
TCCATCACCACCAACCTCCA+TGG | - | chr1.3:43048694-43048713 | MS.gene46443:CDS | 55.0% | |
!! | ACCATGGAGGTTGGTGGTGA+TGG | + | chr1.3:43048698-43048717 | None:intergenic | 55.0% |
AGCAGAGGGGTGGGACATCA+TGG | - | chr1.3:43049173-43049192 | MS.gene46443:CDS | 60.0% | |
CAACTGGAGGAGGAGGAGTG+GGG | - | chr1.3:43049130-43049149 | MS.gene46443:CDS | 60.0% | |
GGCGTATGTTAGCAGAGGGG+TGG | - | chr1.3:43049163-43049182 | MS.gene46443:CDS | 60.0% | |
GCAGACTCCGCCGAGTGCAA+AGG | - | chr1.3:43048924-43048943 | MS.gene46443:CDS | 65.0% | |
GCGGAGTCTGCTCCGCCGAG+TGG | + | chr1.3:43048915-43048934 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 43048663 | 43049397 | 43048663 | ID=MS.gene46443 |
chr1.3 | mRNA | 43048663 | 43049397 | 43048663 | ID=MS.gene46443.t1;Parent=MS.gene46443 |
chr1.3 | exon | 43048663 | 43049397 | 43048663 | ID=MS.gene46443.t1.exon1;Parent=MS.gene46443.t1 |
chr1.3 | CDS | 43048663 | 43049397 | 43048663 | ID=cds.MS.gene46443.t1;Parent=MS.gene46443.t1 |
Gene Sequence |
Protein sequence |