AlfalfaGEDB | MS.gene46472

M. sativa cultivar XinJiangDaYe / MS.gene46472

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00856.31

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46472.t1	XP_024638206.1	94.6	314	14	1	1	311	1	314	3.20E-158	567.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46472.t1	Q9FG08	58.5	282	111	1	36	311	44	325	1.4e-90	334.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46472.t1	A0A396JSM6	94.6	314	14	1	1	311	1	314	2.3e-158	567.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene46472.t1	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46472.t1	MTR_1g054665	96.377	276	7	1	1	273	1	276	0.0	546

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46472.t1	AT5G06620	58.947	285	111	1	33	311	41	325	3.28e-121	351
MS.gene46472.t1	AT5G06620	46.821	173	85	2	33	198	41	213	1.93e-49	165

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Find 89 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTGATGTACCATTGTT+TGG	0.348129	1.4:+45109460	None:intergenic
AACCTTCATCAATGTCACGG+AGG	0.727757	1.4:+45108990	None:intergenic
AAGAGGGGTTCAACTTGCTA+AGG	0.581272	1.4:-45109638	MS.gene46472:CDS
AATCATCTCAGGTGTCAAAC+TGG	0.423936	1.4:+45110204	None:intergenic
AATTGTAGCAGGTGCTTGCA+TGG	0.613839	1.4:-45107640	MS.gene46472:CDS
AATTTCCCTTTCTGGTAAAG+CGG	0.590443	1.4:-45110288	MS.gene46472:CDS
ACAAACCTTCATCAATGTCA+CGG	0.645369	1.4:+45108987	None:intergenic
ACAATGGTACATCAATGTTT+TGG	0.342044	1.4:-45109456	MS.gene46472:CDS
ACCGCAGTCATGATTATAGA+AGG	0.432694	1.4:+45109304	None:intergenic
ACCTTCATCAATGTCACGGA+GGG	0.613577	1.4:+45108991	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGATAAGTGAACTTAG+GGG	+	chr1.4:45109917-45109936	None:intergenic	30.0%
AAACCGATGTTGTCAAATAA+CGG	+	chr1.4:45109369-45109388	None:intergenic	30.0%
AAATAACGGCTATAGCATAA+TGG	+	chr1.4:45109355-45109374	None:intergenic	30.0%
AAATACTACATGATAAGCTG+AGG	+	chr1.4:45110700-45110719	None:intergenic	30.0%
AAATCTCTTTGGTAAATTGC+AGG	-	chr1.4:45113320-45113339	MS.gene46472:CDS	30.0%
AAATGAACAATCTCACTCAT+TGG	-	chr1.4:45111998-45112017	MS.gene46472:intron	30.0%
AAATTTCAAACCACCAAAAC+AGG	+	chr1.4:45110077-45110096	None:intergenic	30.0%
AACATTGATGTACCATTGTT+TGG	+	chr1.4:45111614-45111633	None:intergenic	30.0%
AACTACATTGGTATATTGCA+TGG	+	chr1.4:45112964-45112983	None:intergenic	30.0%
AATATTTGCCTTCCATGTTT+AGG	-	chr1.4:45111907-45111926	MS.gene46472:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	45107633	45113460	45107633	ID=MS.gene46472
chr1.4	mRNA	45107633	45113460	45107633	ID=MS.gene46472.t1;Parent=MS.gene46472
chr1.4	exon	45113152	45113460	45113152	ID=MS.gene46472.t1.exon1;Parent=MS.gene46472.t1
chr1.4	CDS	45113152	45113460	45113152	ID=cds.MS.gene46472.t1;Parent=MS.gene46472.t1
chr1.4	exon	45111387	45111442	45111387	ID=MS.gene46472.t1.exon2;Parent=MS.gene46472.t1
chr1.4	CDS	45111387	45111442	45111387	ID=cds.MS.gene46472.t1;Parent=MS.gene46472.t1
chr1.4	exon	45110198	45110324	45110198	ID=MS.gene46472.t1.exon3;Parent=MS.gene46472.t1
chr1.4	CDS	45110198	45110324	45110198	ID=cds.MS.gene46472.t1;Parent=MS.gene46472.t1
chr1.4	exon	45109595	45109664	45109595	ID=MS.gene46472.t1.exon4;Parent=MS.gene46472.t1
chr1.4	CDS	45109595	45109664	45109595	ID=cds.MS.gene46472.t1;Parent=MS.gene46472.t1
chr1.4	exon	45109306	45109488	45109306	ID=MS.gene46472.t1.exon5;Parent=MS.gene46472.t1
chr1.4	CDS	45109306	45109488	45109306	ID=cds.MS.gene46472.t1;Parent=MS.gene46472.t1
chr1.4	exon	45108993	45109064	45108993	ID=MS.gene46472.t1.exon6;Parent=MS.gene46472.t1
chr1.4	CDS	45108993	45109064	45108993	ID=cds.MS.gene46472.t1;Parent=MS.gene46472.t1
chr1.4	exon	45107633	45107751	45107633	ID=MS.gene46472.t1.exon7;Parent=MS.gene46472.t1
chr1.4	CDS	45107633	45107751	45107633	ID=cds.MS.gene46472.t1;Parent=MS.gene46472.t1

Gene Sequence

>MS.gene46472

ATGGCATTGTCACGATCACTTCTCCGCTTAGCTTCTTCACGTTTTACTAAACCACTTCACCTCTTCTCATTCTCATTTTCATTCTCTACCCAGAAGCCACCTCCCATCCAAGTCTCCCTTACAGACACAGTGGGTCGCGCCGTCTTCGCAACTCGCCCAATCCCTACCGGAGATCTCATCCACACCGCCGAACCCGCCGTCTGCCACCCTTCACCTTCCGCTCCCCACCCCGTCTGTTACTCTTGCCTCGCCAGACTCCCCAACCTCTCCTCCCCCTTTTGTTCTCACCGTTGCCGCACTCATACCCAGGTGCGTGCGTTTTTTTTTTTCTTTCCTTTTTAACACTATAAGATCAACAGGGATATTATTATTAGATAAATGTTATCAAGTTTGTCCCTTTTTGTGTTTGTTTGAGAAATTCGAGTGTGCTCCTCTCAAGGTTTTATGTTCAATTAATTCAGTGTCAATTTCAATAGGCTAAGTCCATAGCCTTAAATGGAGCCCCACAAGTGGACAATGAGATTGAACACCTTGGATTAGTCGGTGATACCGAGTTTAAAATAAAAAACTCATTTTTAACACAATGATGGGATCTACGTTAATTTCATCCAAGTGAATGTTAGAAATAATGTGTTAAAAAGAGTGTTGCTAGCATTATTCCTGTTATCAAATGTATCAATGATATAGTTCACTTTGTTTCAACTTATAGTCCATATAAATAGCAATGGAGGGATGAATTTGATTATCATTAATCTGCAATTTGAAGAATCATTTTGGAATATTAACAATGCAGGGGACTAGATCGATAAGAGCCAACAAATTTAGTCAATAAATTGAGTATTTCTACTCTTAAAATTTATGCAAGTAAGTGATAACTAGTATGTTTTTTTCTTTAAATAATTGGTTATCCTACTTCATAAACAACTATTTATAAACTTATATATATTTGTTCTGAAAGTGAAGGATGATAGAAACTCTTTAAATGTCACGTGCCAAAGCTAGGATGCATTTCTATTCTCTGACTAATGGTTGATGTGTCGTTGTTAAAAGAATTTAAAAAGAGAACAATGTGAATAATGTGCAATCTGTTAACTAGTGTGCATTGAAAGAATGAGTTTGCAGAAAAGAAATGGTATAGTTTAGGGGTCTTGTTAACCAGTGCCCCTAGGCACTGGTTAAGGAATCCAAAAGTAGAAAAATTGTCTTGGAAATATAAACTGTTACTTTTGACTAACTAATTATTACACCACTTTTTACTAAAATGTTACCTCTTTTAGCTGCTTAACCAATGCTCCGGGGGCACTGGTTAACATTCTCCTATAGTTTATTAAACAAGTCTACAACTCAACTCTGATGCTTATTTTGTAGTTTCAGTCACGAGTAATGCATAATATATGGAGTGTGTCAAGCAAATCGAAAGTCTTGTTATTTGGATTCTAACCATGCTTTCATATGCTCTTGTTATTTATAACAACTATACAATTTAGTCTGTGAAAGATGTTACTTTTGTCACTTTGATTTTAGAACTAATCACCCCAAACTTAGGGAACTTTCACAAAGTCTCCTGAGAAATAACAAAACAAGAGTAGTAAGTTAATGTTGTTAATTCCAGATAGTGGAAAATAGTAGTTTATTCAAATTCCACTGCACTGCAATTGCCGATGTTTGACACTTTGTTCTAAATAGTGTATCACAGAACAATAGTGTTCTGTTCAAATTCCATTATGCTATAGCCGTTATTTGACAACATCGGTTTTCCAAACATGAAGGGTTCCAATGTGAGGTCGGTATAATTATCCACATTGTTTATGATATCAATGTGTTATTTGATATCTGACTTGTGAAGCTGTGGTTGCCATCTATTTTCTACTTGTAGTTCTATCATGTGTTTTCGACTTCAATACTTGCATCAACTTGTTACCTATGCATGCAAATGTAATGTAGAAATTTCACAGTAAACAAGCATGTACTCTTCTCTGCAGATATGTACTTATTTTGAGATTTTGATTTATTTATAGGAATATTACAATGTTGAGATGAAAGCAAATTGGATGGATTTTAATAACTATTGCCGGTATGAGAATTTTTCTTTAGCATCTTCAATTGCCATGGGTTTCAATAATCTTTAAACCTCTTGCATGATTCAAAATGTATACATCTTCTCATTTCATCAGTTTTAATGGGACTAATTTTTCTCTTTGGTTTCATAGTAGCTTAATATGTTCTATGGACCATAATTCTTGAACCAAAAAATAAAATAAAATGAATCATCAAAAGGTTTCCCCTAAGTTCACTTATCTGTTTAACAGTGTCAGGTTTGGGTTCTTTGTTTTCTCTGACAGCAAGTCTGATTCAGACATTACAGTGGAGAGAAAAGATTAACTGATTGAAGAGCTATATTTTCATTTTACTCCCTTGTTAGTGTTTTTATGTTTTCGTTGCCTGTTTTGGTGGTTTGAAATTTGATGTAGTATACATACTCACAATGATATTAAACAACACTTTATTCACTTTGGTTCTCTGGTCAAATGCAAGTAGTCAAAGAAGGTGAATTTTCTAATTTAGCTTGCGGTGGTGTGGTGTCTCTGAGATGTAAGGAACAAAGTAGTTTTCAAAATTGTGTCTCAGATAAAGATCTCATCATGGGGTTGGTTATAAACAGGATTGGGAAATTCGGGTGTGCAATTTGCTGATTGGTGGTGTAATTCTTTATGTTGCTTACAATCTTCATGAGTTGAATGCTTTGTTTGTTGGGTTAGAGCACCCCTTTTGCACTCTAAGCAATAAAATTTTGATCATAAAAAAAAAAAAATCACTTCTAAAATTTCAATTGATCTGATTATTATGTATAGCGCCCTAAAAAAAAAGGGCAGGCCAGTGCACTAAAGCTCTAACATAAGCAGCGTCCGGGAAGGGGTCCCACCATTTGGTGTATTGTACGCAGCCTTACCTTGTTTTTAACACAAGAGGCTGTTTCCAGGGATTATTATATACAGCCCTATGATCGGCAATGTCACCCTAATGATAAATTACTGAAACATTTTGCGTTTGTTAACTCTTAATACCTCAGCTTATCATGTAGTATTTTATTGCACCAAAATTACCTAAATGACAATTACCTAACCTCTTTTCAAAGGAACCGGGGTTTAAAATTTCCCTTTCTGGTAAAGCGGTTGGCTTGCATGATCATATCAGGAGTTGCCAGAAGTGACAGTCTTGACATACTTCAACCTGCCAGTTTGACACCTGAGATGATTTTAGAGGTGAGAACTTAGACGTTTATTATAATGACAATAATTAGTTGACAGTTTTCTTCTATAAACTATGACAACTAGTTAGTTGTGAACATTTGAATTGACGATCCTCTCCAATCCACTAGTAGTTCTCAATGATTCTCTTAATGTTGCCTATCCTAAAATACCCTTCAATTAATGCATATTTTCTTTTTCAATGACTCTTTTATTCTCATGGAACAACTTCTCATGAAGGGCATTTTTTTAGAGATCAAGAACGTTAGTTGTGCTAAATAAATTTTTAATAAATTTGAAATTAGTTATTTTCACTTATAATCAATACCGGAGGAAGTATTGTTTGTCCAACTAGCAAGCACTTTTCATCTACCCTTTTTCTCGGATGCCTACCACTCATTAGTTTTCGAAGGAAAACTTCCTTCTGTAAATCATTGTATTTCATATTAAATTTTCACCATTATTGATGTTCAAATTGAAGTTTGATAAAGTTTTGGCATTTGTATTCTGCTGCTTCAGTATGTTTATGTATAAACATCATTTTTCAGATGGAAGAGGGGTTCAACTTGCTAAGGAATGCCTTCACAAAGGCACTTATTGCAGATGAACAAATTGCTTGTATCCTTCTTTTAGGAACATTTTGTTTGAAGTAGATACATATAGCACACATGCATAAAGAAATCATGGATATATGTTGAGAGATTACTTATCTTGGCATTTTAAGTTTTAACCAAACAATGGTACATCAATGTTTTGGCACGAATTCGAATCAATGCATTTCGCATTGAGTTGGCTGGTGGTGGATCATATGAAGATCTTCTTTCTTCAGCATTTGCATCTGTAGAAGCCGAAGCTGCTGTTGGAAATGCTGTCTATATTCTTCCTTCCTTCTATAATCATGACTGCGGTGAGTACAATTTTCTTTTACTTTTCTCTATGTCGTCAACATGAGCTTATATTTCTTCAACATCTTTTAAATTATTCATAAAGCACAGTTGTCTTAACTGGAAAAGCTAAATTTTAACGAATATTTGCCTTCCATGTTTAGGAGAAGTTATGTAACCAGAAAATTCCACACGCATAGACAACTCTATACCTTGTCATTTTTAACCCTGAGAAATGAACAATCTCACTCATTGGTATTGCAGATCCCAATGCACACATTATATGGATAGATAATGCAGTGGCAAAATTGAAGGCCCTCCGTGACATTGATGAAGGTTTGTCCTCAATCCTATTTTATTTGATTAAATGTTTTTCCCTTTTAATTTTGTTGGTTGGCTCATCCAAAACGTAGTGCATTCAATGATTTCTGAAAACTTGCTACTCATTTTGATGTATTTGCATGTGACAGTTTCTGCAACTTAATGGAAGGCAGTTTTGCCTATACCATGTTTTATCACCAAAATCTGGTCCATAACCTGGATAGAAGAGGATGCTTGTCTTAGGTAGTCATTAATAAAGTCAACACTCGACGCAAACCTTTGTCCCAACCCATCTTTTATAACATCAATCATTGATAGAACACTTTAAGAGAATACCTTTTAAAACCTTTTTCTTAACAGTTTTATTGTTTTTGATTTTTTTTTTTAACGAAGCCTATAGTGTTGTTTGGTACATGTATGTAGATAACTCTCTAGATAGTGCAGCCACCCTTGGTGCTTTGCTGCCAATCTTTGGGTTCGTTACGCTCTTTATGCCAAGCTTGAGGGTGCCATTTTGGTTGTTGAAATTGCATCCTTGAAAGGTTGGCATAATCTTTGACTTGAGTGTGACTCCTCTCTAGTGGTCTCTGCACTCGAAAAAAAACCATTTGCTTATCCCTTGGTGATTGCGTAATAGGTGGCTTAGCTGCATGATGCTAACTACCCATATGCGTTTCTTCTACTCTCAAATTTATTGAGAAGGAAATGCTTGTGACGGCAAACTTACTTCCTACCTCCAGATCCGCCCGACTAATATATTGCATCAATGAGATACAAAGCTGTGAGATCATAGAAACATAAATAACTCATTAATCAAACAAATGGAATTAAAAGTTAGCTGTAAGGAGCTTAAAGGACATAGCTTTTTTGATTGACCATGCAATATACCAATGTAGTTAATCATCCAATTATAGAATGTTGTTATCTGTTATCGCAATGTGATCAGTGTTCTTGCTAAATAAAGTTGGTTTTGTTTTTATCATCCTTAATTTTCAGTCAAATTTTTTCATGCATCCTTCATAGTCATTCTCTTATGTAGTAAATAAAACGTAGAACTTAATTAGGAAAATACAAGTGTATGTATGAATTCATCATCTTGTTTTATTATAAAGCATTTTTTTCTTCATTTTCTTACATTTGCACTAGAAGGAAACATTACTATAAGATAGCAGACCTGGATGGTAGCAAGTTGCTGGTCTTAAATTATTTCCTAAAACTATCGTTGATCAACAACAAATCTCTTTGGTAAATTGCAGGTGAAGAACTGAGAATCTGCTATATTGATGCCAGTCTGGACCGCGATGCTCGGAGAGAACTATTGTTTCAAGGTTTCGGTTTTCAATGCAATTGTAGCAGGTGCTTGCATGGTGATTAG

Protein sequence

>MS.gene46472.t1

MALSRSLLRLASSRFTKPLHLFSFSFSFSTQKPPPIQVSLTDTVGRAVFATRPIPTGDLIHTAEPAVCHPSPSAPHPVCYSCLARLPNLSSPFCSHRCRTHTQEYYNVEMKANWMDFNNYCRNRGLKFPFLVKRLACMIISGVARSDSLDILQPASLTPEMILEMEEGFNLLRNAFTKALIADEQIAFLTKQWYINVLARIRINAFRIELAGGGSYEDLLSSAFASVEAEAAVGNAVYILPSFYNHDCDPNAHIIWIDNAVAKLKALRDIDEGEELRICYIDASLDRDARRELLFQGFGFQCNCSRCLHGD