Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46512.t1 | KEH22261.1 | 88 | 233 | 20 | 1 | 1 | 225 | 1 | 233 | 7.40E-117 | 429.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46512.t1 | Q9S7L2 | 40.0 | 115 | 57 | 3 | 62 | 164 | 211 | 325 | 4.4e-17 | 89.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46512.t1 | A0A072TYJ9 | 88.0 | 233 | 20 | 1 | 1 | 225 | 1 | 233 | 5.4e-117 | 429.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene46512.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46512.t1 | MTR_7g035300 | 87.983 | 233 | 20 | 1 | 1 | 225 | 1 | 233 | 1.66e-155 | 430 |
| MS.gene46512.t1 | MTR_7g037260 | 43.096 | 239 | 80 | 6 | 42 | 224 | 119 | 357 | 1.10e-52 | 173 |
| MS.gene46512.t1 | MTR_7g037130 | 43.644 | 236 | 77 | 6 | 42 | 221 | 119 | 354 | 4.53e-49 | 164 |
| MS.gene46512.t1 | MTR_7g451170 | 40.698 | 258 | 89 | 7 | 31 | 224 | 154 | 411 | 9.83e-48 | 162 |
| MS.gene46512.t1 | MTR_4g088015 | 35.808 | 229 | 83 | 6 | 57 | 221 | 210 | 438 | 1.25e-35 | 130 |
| MS.gene46512.t1 | MTR_1g057980 | 33.068 | 251 | 95 | 6 | 32 | 209 | 44 | 294 | 3.16e-31 | 116 |
| MS.gene46512.t1 | MTR_7g035350 | 31.200 | 250 | 95 | 6 | 36 | 208 | 193 | 442 | 5.70e-26 | 104 |
| MS.gene46512.t1 | MTR_7g450950 | 39.286 | 196 | 77 | 5 | 37 | 190 | 125 | 320 | 3.93e-25 | 100 |
| MS.gene46512.t1 | MTR_3g077650 | 45.283 | 106 | 46 | 3 | 70 | 163 | 183 | 288 | 1.31e-20 | 89.7 |
| MS.gene46512.t1 | MTR_5g049190 | 42.202 | 109 | 51 | 3 | 64 | 160 | 15 | 123 | 8.51e-20 | 85.1 |
| MS.gene46512.t1 | MTR_4g105660 | 38.261 | 115 | 59 | 3 | 62 | 164 | 174 | 288 | 9.65e-19 | 84.3 |
| MS.gene46512.t1 | MTR_3g463400 | 35.652 | 115 | 62 | 3 | 70 | 172 | 135 | 249 | 1.10e-18 | 84.3 |
| MS.gene46512.t1 | MTR_5g070020 | 31.707 | 164 | 90 | 5 | 28 | 174 | 77 | 235 | 1.51e-18 | 83.2 |
| MS.gene46512.t1 | MTR_6g027340 | 38.614 | 101 | 52 | 3 | 91 | 185 | 50 | 146 | 3.60e-14 | 68.9 |
| MS.gene46512.t1 | MTR_7g061330 | 41.935 | 93 | 42 | 3 | 71 | 151 | 116 | 208 | 7.71e-14 | 70.5 |
| MS.gene46512.t1 | MTR_7g461410 | 41.935 | 93 | 42 | 3 | 71 | 151 | 116 | 208 | 7.71e-14 | 70.5 |
| MS.gene46512.t1 | MTR_7g061330 | 41.935 | 93 | 42 | 3 | 71 | 151 | 80 | 172 | 8.66e-14 | 70.1 |
| MS.gene46512.t1 | MTR_5g010650 | 39.785 | 93 | 44 | 3 | 70 | 150 | 112 | 204 | 1.06e-13 | 69.7 |
| MS.gene46512.t1 | MTR_6g027360 | 38.384 | 99 | 51 | 3 | 93 | 185 | 114 | 208 | 1.37e-13 | 68.9 |
| MS.gene46512.t1 | MTR_4g019370 | 37.391 | 115 | 52 | 5 | 71 | 165 | 41 | 155 | 1.58e-13 | 68.9 |
| MS.gene46512.t1 | MTR_1g026870 | 32.174 | 115 | 65 | 4 | 71 | 172 | 88 | 202 | 3.20e-13 | 68.6 |
| MS.gene46512.t1 | MTR_3g110028 | 33.913 | 115 | 63 | 4 | 71 | 172 | 88 | 202 | 7.92e-13 | 67.4 |
| MS.gene46512.t1 | MTR_4g128190 | 36.957 | 92 | 55 | 3 | 65 | 154 | 10 | 100 | 1.22e-11 | 62.8 |
| MS.gene46512.t1 | MTR_1g008970 | 39.796 | 98 | 55 | 4 | 93 | 187 | 127 | 223 | 1.73e-11 | 62.4 |
| MS.gene46512.t1 | MTR_5g041570 | 35.455 | 110 | 54 | 4 | 71 | 163 | 137 | 246 | 3.16e-11 | 62.4 |
| MS.gene46512.t1 | MTR_4g082040 | 34.483 | 116 | 63 | 4 | 50 | 152 | 86 | 201 | 3.17e-11 | 62.4 |
| MS.gene46512.t1 | MTR_3g052450 | 33.333 | 102 | 53 | 3 | 64 | 151 | 38 | 138 | 5.70e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46512.t1 | AT4G18770 | 40.000 | 115 | 57 | 3 | 62 | 164 | 211 | 325 | 1.27e-20 | 89.7 |
| MS.gene46512.t1 | AT3G27785 | 40.541 | 111 | 54 | 2 | 62 | 160 | 183 | 293 | 1.35e-19 | 87.0 |
| MS.gene46512.t1 | AT5G40360 | 40.678 | 118 | 56 | 3 | 60 | 164 | 150 | 266 | 1.56e-18 | 83.2 |
| MS.gene46512.t1 | AT2G25230 | 40.157 | 127 | 63 | 4 | 62 | 175 | 20 | 146 | 1.14e-17 | 79.0 |
| MS.gene46512.t1 | AT5G58850 | 38.532 | 109 | 55 | 3 | 65 | 161 | 102 | 210 | 1.32e-17 | 81.3 |
| MS.gene46512.t1 | AT5G11050 | 39.640 | 111 | 55 | 3 | 63 | 161 | 100 | 210 | 1.67e-17 | 80.9 |
| MS.gene46512.t1 | AT5G40430 | 35.758 | 165 | 89 | 6 | 62 | 209 | 48 | 212 | 3.19e-17 | 78.2 |
| MS.gene46512.t1 | AT5G11510 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 5.44e-13 | 68.2 |
| MS.gene46512.t1 | AT5G11510 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 5.44e-13 | 68.2 |
| MS.gene46512.t1 | AT5G11510 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 5.44e-13 | 68.2 |
| MS.gene46512.t1 | AT5G11510 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 5.87e-13 | 67.8 |
| MS.gene46512.t1 | AT5G11510 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 6.22e-13 | 67.8 |
| MS.gene46512.t1 | AT3G53200 | 41.667 | 72 | 40 | 2 | 78 | 148 | 1 | 71 | 1.05e-12 | 65.1 |
| MS.gene46512.t1 | AT5G02320 | 36.559 | 93 | 47 | 3 | 71 | 151 | 130 | 222 | 1.37e-12 | 66.6 |
| MS.gene46512.t1 | AT5G02320 | 36.559 | 93 | 47 | 3 | 71 | 151 | 130 | 222 | 1.37e-12 | 66.6 |
| MS.gene46512.t1 | AT5G02320 | 36.559 | 93 | 47 | 3 | 71 | 151 | 70 | 162 | 1.57e-12 | 66.6 |
| MS.gene46512.t1 | AT1G69560 | 25.806 | 186 | 113 | 6 | 4 | 169 | 61 | 241 | 1.88e-12 | 65.9 |
| MS.gene46512.t1 | AT1G69560 | 25.806 | 186 | 113 | 6 | 4 | 169 | 45 | 225 | 2.05e-12 | 65.9 |
| MS.gene46512.t1 | AT3G09370 | 38.710 | 93 | 45 | 3 | 71 | 151 | 133 | 225 | 2.98e-12 | 65.9 |
| MS.gene46512.t1 | AT3G09370 | 38.710 | 93 | 45 | 3 | 71 | 151 | 138 | 230 | 3.07e-12 | 65.5 |
| MS.gene46512.t1 | AT3G09370 | 38.710 | 93 | 45 | 3 | 71 | 151 | 146 | 238 | 3.49e-12 | 65.5 |
| MS.gene46512.t1 | AT3G28470 | 32.673 | 101 | 55 | 3 | 64 | 151 | 10 | 110 | 6.40e-12 | 64.3 |
| MS.gene46512.t1 | AT1G57560 | 29.545 | 132 | 82 | 4 | 93 | 218 | 51 | 177 | 8.15e-12 | 63.5 |
| MS.gene46512.t1 | AT2G47190 | 31.193 | 109 | 62 | 3 | 53 | 148 | 7 | 115 | 1.32e-11 | 62.8 |
| MS.gene46512.t1 | AT4G33450 | 43.243 | 74 | 37 | 2 | 93 | 165 | 55 | 124 | 1.33e-11 | 62.8 |
| MS.gene46512.t1 | AT3G53200 | 45.614 | 57 | 30 | 1 | 93 | 148 | 48 | 104 | 1.91e-11 | 62.0 |
| MS.gene46512.t1 | AT1G57560 | 40.580 | 69 | 40 | 1 | 93 | 160 | 51 | 119 | 2.69e-11 | 62.4 |
| MS.gene46512.t1 | AT4G32730 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 3.06e-11 | 62.8 |
| MS.gene46512.t1 | AT4G32730 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 3.49e-11 | 62.8 |
| MS.gene46512.t1 | AT4G32730 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 3.49e-11 | 62.8 |
| MS.gene46512.t1 | AT4G32730 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 3.49e-11 | 62.8 |
| MS.gene46512.t1 | AT4G32730 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 3.49e-11 | 62.8 |
Find 43 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTATGTGGAAACGTTTA+AGG | 0.181442 | 7.1:+59994788 | MS.gene46512:CDS |
| AACGATGATTATGAGTTATA+TGG | 0.223163 | 7.1:+59994713 | MS.gene46512:CDS |
| GGCATTCTCGACTTGCTTAA+TGG | 0.229142 | 7.1:-59994582 | None:intergenic |
| ACTACTCCAGAAGATGAATT+TGG | 0.261057 | 7.1:+59994668 | MS.gene46512:CDS |
| GATCAAGCCCACAACATATT+TGG | 0.264284 | 7.1:+59994488 | MS.gene46512:CDS |
| AAAAGAAACACCTTAATATC+TGG | 0.291683 | 7.1:-59993975 | None:intergenic |
| CCATTGATCAGCATTTATAT+TGG | 0.314785 | 7.1:-59993714 | None:intergenic |
| AAATGATTGTACTCAATATA+AGG | 0.322591 | 7.1:+59993541 | MS.gene46512:CDS |
| CCATCTTAAACCAGATATTA+AGG | 0.331529 | 7.1:+59993965 | MS.gene46512:CDS |
| GAATAGTATTCTGCTGCTTA+TGG | 0.333313 | 7.1:-59993661 | None:intergenic |
| GAAATTGATTTCCTGCTTCA+TGG | 0.333503 | 7.1:-59994759 | None:intergenic |
| ACCTTAAACGTTTCCACATA+AGG | 0.341962 | 7.1:-59994789 | None:intergenic |
| TATCCACCAAATTCATCTTC+TGG | 0.354153 | 7.1:-59994674 | None:intergenic |
| TAAGCAGCAGAATACTATTC+AGG | 0.381837 | 7.1:+59993664 | MS.gene46512:CDS |
| TCAATATAAGGAACATCATA+TGG | 0.403054 | 7.1:+59993553 | MS.gene46512:CDS |
| TAATCATCGTTGAATGTCAT+TGG | 0.431930 | 7.1:-59994701 | None:intergenic |
| TTCCTGCTTCATGGGAACCT+CGG | 0.444432 | 7.1:-59994750 | None:intergenic |
| TCCTGCTTCATGGGAACCTC+GGG | 0.444652 | 7.1:-59994749 | None:intergenic |
| ACAACATATTTGGAGACAAC+TGG | 0.446422 | 7.1:+59994498 | MS.gene46512:CDS |
| GTTGTCTCCAAATATGTTGT+GGG | 0.463375 | 7.1:-59994495 | None:intergenic |
| TGCTTATGGTAAATGAGAAC+GGG | 0.465009 | 7.1:-59993647 | None:intergenic |
| AATTTCATGAAGGCCTTATG+TGG | 0.471697 | 7.1:+59994776 | MS.gene46512:CDS |
| AAATTGATTTCCTGCTTCAT+GGG | 0.472609 | 7.1:-59994758 | None:intergenic |
| ATATTTGTATCCAATTTCAC+TGG | 0.483235 | 7.1:-59993606 | None:intergenic |
| CCTTAATATCTGGTTTAAGA+TGG | 0.484241 | 7.1:-59993965 | None:intergenic |
| AATGGACTACAAAAGAGAAT+AGG | 0.491834 | 7.1:+59993732 | MS.gene46512:CDS |
| TCCCGAGGTTCCCATGAAGC+AGG | 0.502564 | 7.1:+59994748 | MS.gene46512:CDS |
| AGTTGTCTCCAAATATGTTG+TGG | 0.504440 | 7.1:-59994496 | None:intergenic |
| GAAATTTCAAGAAGATTGCC+AGG | 0.513813 | 7.1:+59994524 | MS.gene46512:CDS |
| CCAATATAAATGCTGATCAA+TGG | 0.515462 | 7.1:+59993714 | MS.gene46512:CDS |
| TGAGAACGGGTTCTTGATCA+TGG | 0.521600 | 7.1:-59993634 | None:intergenic |
| CTGCTTATGGTAAATGAGAA+CGG | 0.536086 | 7.1:-59993648 | None:intergenic |
| TGGATCTCTTTCTAAATCGA+TGG | 0.536456 | 7.1:+59993913 | MS.gene46512:CDS |
| TAAAACAATGCATGGAGAGA+TGG | 0.560064 | 7.1:+59993940 | MS.gene46512:CDS |
| ATGGACCTTAAAACAATGCA+TGG | 0.570560 | 7.1:+59993932 | MS.gene46512:CDS |
| ACTCCAGAAGATGAATTTGG+TGG | 0.588319 | 7.1:+59994671 | MS.gene46512:CDS |
| TAAGGAACATCATATGGATG+AGG | 0.593905 | 7.1:+59993559 | MS.gene46512:CDS |
| GCAGGAAATCAATTTCATGA+AGG | 0.597528 | 7.1:+59994766 | MS.gene46512:CDS |
| GAATGAGCCATTGAGTGAGG+AGG | 0.611909 | 7.1:+59994451 | MS.gene46512:intron |
| ACATAACTATCGTTACGTCC+TGG | 0.612302 | 7.1:-59994542 | None:intergenic |
| TGGTTGCAAAACTAGAGTGA+TGG | 0.623138 | 7.1:-59993586 | None:intergenic |
| TCGATTTAGAAAGAGATCCA+CGG | 0.651610 | 7.1:-59993910 | None:intergenic |
| GTAGAATGAGCCATTGAGTG+AGG | 0.657428 | 7.1:+59994448 | MS.gene46512:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCATATATAGTTTTATTA+TGG | + | chr7.1:59993797-59993816 | MS.gene46512:intron | 10.0% |
| !! | GTCTATATATAATTAAATAG+AGG | - | chr7.1:59994402-59994421 | None:intergenic | 15.0% |
| !! | AAACCTTCAAAAATGTAATT+AGG | - | chr7.1:59994647-59994666 | None:intergenic | 20.0% |
| !! | AAATGATTGTACTCAATATA+AGG | + | chr7.1:59993541-59993560 | MS.gene46512:CDS | 20.0% |
| !! | ATAAAAATATTGCACATGAA+TGG | + | chr7.1:59994350-59994369 | MS.gene46512:intron | 20.0% |
| !! | ATACAAAACATGTTTAGATT+AGG | - | chr7.1:59994424-59994443 | None:intergenic | 20.0% |
| !! | TTACGCAATAAAAGATAAAA+AGG | - | chr7.1:59994033-59994052 | None:intergenic | 20.0% |
| !!! | TATGATTTTATAACAACAAG+TGG | + | chr7.1:59994162-59994181 | MS.gene46512:intron | 20.0% |
| !!! | TGCTAAAAAAAGTGTTAAAA+AGG | - | chr7.1:59994006-59994025 | None:intergenic | 20.0% |
| ! | AAAAAATACACACATCCATT+AGG | - | chr7.1:59994287-59994306 | None:intergenic | 25.0% |
| ! | AAAAGAAACACCTTAATATC+TGG | - | chr7.1:59993978-59993997 | None:intergenic | 25.0% |
| ! | AACGATGATTATGAGTTATA+TGG | + | chr7.1:59994713-59994732 | MS.gene46512:CDS | 25.0% |
| ! | ATATTTGTATCCAATTTCAC+TGG | - | chr7.1:59993609-59993628 | None:intergenic | 25.0% |
| ! | CATTTCATTGAAAAACCTAA+TGG | + | chr7.1:59994269-59994288 | MS.gene46512:intron | 25.0% |
| ! | CTTCAAAAATGTAATTAGGT+TGG | - | chr7.1:59994643-59994662 | None:intergenic | 25.0% |
| ! | TCAATATAAGGAACATCATA+TGG | + | chr7.1:59993553-59993572 | MS.gene46512:CDS | 25.0% |
| !! | CAACCTAATTACATTTTTGA+AGG | + | chr7.1:59994641-59994660 | MS.gene46512:CDS | 25.0% |
| !!! | TGTAAAAGCATTATATGTGT+AGG | - | chr7.1:59994057-59994076 | None:intergenic | 25.0% |
| ATGGAAACAAATTGGTGAAA+TGG | + | chr7.1:59994369-59994388 | MS.gene46512:intron | 30.0% | |
| CCAATATAAATGCTGATCAA+TGG | + | chr7.1:59993714-59993733 | MS.gene46512:CDS | 30.0% | |
| CCATCTTAAACCAGATATTA+AGG | + | chr7.1:59993965-59993984 | MS.gene46512:CDS | 30.0% | |
| CCATTGATCAGCATTTATAT+TGG | - | chr7.1:59993717-59993736 | None:intergenic | 30.0% | |
| TAATCATCGTTGAATGTCAT+TGG | - | chr7.1:59994704-59994723 | None:intergenic | 30.0% | |
| ! | AAATTGATTTCCTGCTTCAT+GGG | - | chr7.1:59994761-59994780 | None:intergenic | 30.0% |
| ! | CCTTAATATCTGGTTTAAGA+TGG | - | chr7.1:59993968-59993987 | None:intergenic | 30.0% |
| ! | TTGTTTCTTACATTTGAGAC+CGG | + | chr7.1:59994315-59994334 | MS.gene46512:intron | 30.0% |
| ! | TTTTTATTATGTACTCCCTC+CGG | - | chr7.1:59994337-59994356 | None:intergenic | 30.0% |
| !! | AATGGACTACAAAAGAGAAT+AGG | + | chr7.1:59993732-59993751 | MS.gene46512:CDS | 30.0% |
| !!! | AGTACAATCATTTTGAGACA+AGG | - | chr7.1:59993534-59993553 | None:intergenic | 30.0% |
| !!! | GTACAATCATTTTGAGACAA+GGG | - | chr7.1:59993533-59993552 | None:intergenic | 30.0% |
| ACAACATATTTGGAGACAAC+TGG | + | chr7.1:59994498-59994517 | MS.gene46512:CDS | 35.0% | |
| ACTACTCCAGAAGATGAATT+TGG | + | chr7.1:59994668-59994687 | MS.gene46512:CDS | 35.0% | |
| AGAATGCCAAGAAAAAATCC+AGG | + | chr7.1:59994597-59994616 | MS.gene46512:CDS | 35.0% | |
| AGTTGTCTCCAAATATGTTG+TGG | - | chr7.1:59994499-59994518 | None:intergenic | 35.0% | |
| ATGGACCTTAAAACAATGCA+TGG | + | chr7.1:59993932-59993951 | MS.gene46512:CDS | 35.0% | |
| CAAGAAAAAATCCAGGAACA+TGG | + | chr7.1:59994604-59994623 | MS.gene46512:CDS | 35.0% | |
| CTGCTTATGGTAAATGAGAA+CGG | - | chr7.1:59993651-59993670 | None:intergenic | 35.0% | |
| GAAATTTCAAGAAGATTGCC+AGG | + | chr7.1:59994524-59994543 | MS.gene46512:CDS | 35.0% | |
| GCACATGAATGGAAACAAAT+TGG | + | chr7.1:59994361-59994380 | MS.gene46512:intron | 35.0% | |
| GCAGGAAATCAATTTCATGA+AGG | + | chr7.1:59994766-59994785 | MS.gene46512:CDS | 35.0% | |
| GTTGTCTCCAAATATGTTGT+GGG | - | chr7.1:59994498-59994517 | None:intergenic | 35.0% | |
| TAAAACAATGCATGGAGAGA+TGG | + | chr7.1:59993940-59993959 | MS.gene46512:CDS | 35.0% | |
| TAAGCAGCAGAATACTATTC+AGG | + | chr7.1:59993664-59993683 | MS.gene46512:CDS | 35.0% | |
| TAAGGAACATCATATGGATG+AGG | + | chr7.1:59993559-59993578 | MS.gene46512:CDS | 35.0% | |
| TATCCACCAAATTCATCTTC+TGG | - | chr7.1:59994677-59994696 | None:intergenic | 35.0% | |
| TCGATTTAGAAAGAGATCCA+CGG | - | chr7.1:59993913-59993932 | None:intergenic | 35.0% | |
| TGCTTATGGTAAATGAGAAC+GGG | - | chr7.1:59993650-59993669 | None:intergenic | 35.0% | |
| TGGATCTCTTTCTAAATCGA+TGG | + | chr7.1:59993913-59993932 | MS.gene46512:CDS | 35.0% | |
| ! | AATTTCATGAAGGCCTTATG+TGG | + | chr7.1:59994776-59994795 | MS.gene46512:CDS | 35.0% |
| ! | AGTTTTGCAACCAGTGAAAT+TGG | + | chr7.1:59993596-59993615 | MS.gene46512:CDS | 35.0% |
| ! | CTTAATTTTCACCATGTTCC+TGG | - | chr7.1:59994618-59994637 | None:intergenic | 35.0% |
| ! | GAAATTGATTTCCTGCTTCA+TGG | - | chr7.1:59994762-59994781 | None:intergenic | 35.0% |
| ! | GAATAGTATTCTGCTGCTTA+TGG | - | chr7.1:59993664-59993683 | None:intergenic | 35.0% |
| !! | TCTCTCCATGCATTGTTTTA+AGG | - | chr7.1:59993940-59993959 | None:intergenic | 35.0% |
| !!! | CATGTTCCTGGATTTTTTCT+TGG | - | chr7.1:59994606-59994625 | None:intergenic | 35.0% |
| ACATAACTATCGTTACGTCC+TGG | - | chr7.1:59994545-59994564 | None:intergenic | 40.0% | |
| ACTCCAGAAGATGAATTTGG+TGG | + | chr7.1:59994671-59994690 | MS.gene46512:CDS | 40.0% | |
| GATCAAGCCCACAACATATT+TGG | + | chr7.1:59994488-59994507 | MS.gene46512:CDS | 40.0% | |
| TGGTTGCAAAACTAGAGTGA+TGG | - | chr7.1:59993589-59993608 | None:intergenic | 40.0% | |
| ! | TAGCATTTTTGTCGAATCCG+TGG | + | chr7.1:59993893-59993912 | MS.gene46512:intron | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | + | chr7.1:59994319-59994338 | MS.gene46512:intron | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | + | chr7.1:59994318-59994337 | MS.gene46512:intron | 40.0% |
| !! | TGGATTAGAGTTTTATCCCG+AGG | + | chr7.1:59994733-59994752 | MS.gene46512:CDS | 40.0% |
| GTAGAATGAGCCATTGAGTG+AGG | + | chr7.1:59994448-59994467 | MS.gene46512:intron | 45.0% | |
| ! | GGCATTCTCGACTTGCTTAA+TGG | - | chr7.1:59994585-59994604 | None:intergenic | 45.0% |
| ! | TGAGAACGGGTTCTTGATCA+TGG | - | chr7.1:59993637-59993656 | None:intergenic | 45.0% |
| ! | TTTTGCTCCTCCTCACTCAA+TGG | - | chr7.1:59994461-59994480 | None:intergenic | 45.0% |
| !!! | TTTTTTTTATTTATTTTATG+CGG | - | chr7.1:59994091-59994110 | None:intergenic | 5.0% |
| GAATGAGCCATTGAGTGAGG+AGG | + | chr7.1:59994451-59994470 | MS.gene46512:intron | 50.0% | |
| TTCCTGCTTCATGGGAACCT+CGG | - | chr7.1:59994753-59994772 | None:intergenic | 50.0% | |
| TCCTGCTTCATGGGAACCTC+GGG | - | chr7.1:59994752-59994771 | None:intergenic | 55.0% | |
| TCCCGAGGTTCCCATGAAGC+AGG | + | chr7.1:59994748-59994767 | MS.gene46512:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 59993524 | 59994808 | 59993524 | ID=MS.gene46512 |
| chr7.1 | mRNA | 59993524 | 59994808 | 59993524 | ID=MS.gene46512.t1;Parent=MS.gene46512 |
| chr7.1 | exon | 59993524 | 59993753 | 59993524 | ID=MS.gene46512.t1.exon1;Parent=MS.gene46512.t1 |
| chr7.1 | CDS | 59993524 | 59993753 | 59993524 | ID=cds.MS.gene46512.t1;Parent=MS.gene46512.t1 |
| chr7.1 | exon | 59993896 | 59993986 | 59993896 | ID=MS.gene46512.t1.exon2;Parent=MS.gene46512.t1 |
| chr7.1 | CDS | 59993896 | 59993986 | 59993896 | ID=cds.MS.gene46512.t1;Parent=MS.gene46512.t1 |
| chr7.1 | exon | 59994452 | 59994808 | 59994452 | ID=MS.gene46512.t1.exon3;Parent=MS.gene46512.t1 |
| chr7.1 | CDS | 59994452 | 59994808 | 59994452 | ID=cds.MS.gene46512.t1;Parent=MS.gene46512.t1 |
| Gene Sequence |
| Protein sequence |
