Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46888.t1 | KEH30327.1 | 87.1 | 505 | 64 | 1 | 1 | 504 | 76 | 580 | 1.10E-144 | 523.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46888.t1 | O94481 | 33.8 | 130 | 78 | 4 | 363 | 489 | 380 | 504 | 7.1e-07 | 57.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46888.t1 | A0A072UKV6 | 87.1 | 505 | 64 | 1 | 1 | 504 | 76 | 580 | 8.0e-145 | 523.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene46888.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46888.t1 | MTR_4g067250 | 91.089 | 505 | 44 | 1 | 1 | 504 | 76 | 580 | 0.0 | 880 |
| MS.gene46888.t1 | MTR_8g091830 | 51.005 | 398 | 166 | 7 | 134 | 504 | 363 | 758 | 1.11e-96 | 309 |
| MS.gene46888.t1 | MTR_8g091830 | 50.761 | 394 | 169 | 6 | 134 | 504 | 365 | 756 | 3.21e-93 | 301 |
| MS.gene46888.t1 | MTR_8g091850 | 40.532 | 301 | 125 | 7 | 124 | 422 | 46 | 294 | 8.59e-54 | 183 |
| MS.gene46888.t1 | MTR_8g091840 | 56.140 | 57 | 24 | 1 | 449 | 504 | 9 | 65 | 3.44e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46888.t1 | AT4G39160 | 38.372 | 258 | 134 | 8 | 191 | 436 | 277 | 521 | 2.33e-35 | 139 |
| MS.gene46888.t1 | AT4G39160 | 38.372 | 258 | 134 | 8 | 191 | 436 | 277 | 521 | 2.33e-35 | 139 |
| MS.gene46888.t1 | AT4G39160 | 38.372 | 258 | 134 | 8 | 191 | 436 | 277 | 521 | 3.01e-35 | 139 |
Find 85 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTCAATCAATTTCTCTT+AGG | 0.163126 | 4.3:-37000599 | MS.gene46888:CDS |
| TATGCAATTCCCATTCTTTC+AGG | 0.200971 | 4.3:-36999923 | MS.gene46888:CDS |
| TCTTGCAATTGCAGAAAATA+AGG | 0.274714 | 4.3:-37000571 | MS.gene46888:CDS |
| TCTATATTGTTACAAATATA+AGG | 0.289417 | 4.3:+37000940 | None:intergenic |
| CACAGTGGACCAGGCTCTGC+TGG | 0.334784 | 4.3:-37000637 | MS.gene46888:intron |
| GTTGAATCATTGTAAAATCT+AGG | 0.346657 | 4.3:+36999686 | None:intergenic |
| ACAAGTCACCTAGGGTAAAA+TGG | 0.357410 | 4.3:-36999899 | MS.gene46888:CDS |
| CTGCTGGATGATTATGAACT+TGG | 0.367304 | 4.3:-37000621 | MS.gene46888:CDS |
| GGCTTCCTGATTTGCATTAG+TGG | 0.370648 | 4.3:+36999375 | None:intergenic |
| CCTGAGACCAACCTCAATAA+TGG | 0.378901 | 4.3:-37001680 | MS.gene46888:intron |
| GTTGGCTTCAAAAGTGCTTC+AGG | 0.382886 | 4.3:-37001413 | MS.gene46888:CDS |
| TACTAGCTTGATCATCCTCT+TGG | 0.383958 | 4.3:+36999970 | None:intergenic |
| TTCTACCACTAATGCAAATC+AGG | 0.389275 | 4.3:-36999380 | MS.gene46888:CDS |
| TTCTCAATCAATTTCTCTTA+GGG | 0.392485 | 4.3:-37000598 | MS.gene46888:CDS |
| CATGCTACCTCGTCTGTAGA+TGG | 0.395737 | 4.3:-37001749 | MS.gene46888:CDS |
| GGCGATTTCTTTCATGATGC+TGG | 0.401167 | 4.3:-37000044 | MS.gene46888:CDS |
| AAAAGTTCTCTCGTTCTTCT+CGG | 0.411529 | 4.3:-37000756 | MS.gene46888:CDS |
| ACATAGGCTCTGAAGGAGTT+TGG | 0.412678 | 4.3:-36999709 | MS.gene46888:intron |
| GCTATTAATAGTCGTTCATC+AGG | 0.426472 | 4.3:-36999580 | MS.gene46888:intron |
| CGTAAAAGATCATCTGTTGC+TGG | 0.432583 | 4.3:-37001072 | MS.gene46888:CDS |
| TTTGACCTTCGGCGCAAACT+TGG | 0.442856 | 4.3:+37001811 | None:intergenic |
| GTGACTTGTCCCTGAAAGAA+TGG | 0.455083 | 4.3:+36999913 | None:intergenic |
| ATGCAATTCCCATTCTTTCA+GGG | 0.455410 | 4.3:-36999922 | MS.gene46888:CDS |
| CCATTATTGAGGTTGGTCTC+AGG | 0.458534 | 4.3:+37001680 | None:intergenic |
| TTCAGATATTTCCTTTCGTA+AGG | 0.463522 | 4.3:+37001778 | None:intergenic |
| GTGATGATGACTTACGGAAA+TGG | 0.472624 | 4.3:-36998718 | MS.gene46888:CDS |
| AGAGTGCATACATTAATTCC+AGG | 0.475172 | 4.3:+36999325 | None:intergenic |
| TTTCATTCCCACAGTGGACC+AGG | 0.476047 | 4.3:-37000646 | MS.gene46888:intron |
| CTGTGTTGCTTACCTTCGAT+TGG | 0.477352 | 4.3:+37000410 | None:intergenic |
| CAGTGCTGATGTTAAAGATC+AGG | 0.478050 | 4.3:-36998783 | MS.gene46888:CDS |
| AAACATAATTACCATTATTG+AGG | 0.480467 | 4.3:+37001669 | None:intergenic |
| AATGGAATGAATGTTGTTCT+CGG | 0.482678 | 4.3:+37001370 | None:intergenic |
| ATAATTACCATTATTGAGGT+TGG | 0.490657 | 4.3:+37001673 | None:intergenic |
| CATTACTAACCACGTGCAGC+AGG | 0.498380 | 4.3:+37001939 | None:intergenic |
| GCATTAGTGGTAGAAATTTG+TGG | 0.499145 | 4.3:+36999388 | None:intergenic |
| TGTTGCTTACCTTCGATTGG+TGG | 0.499150 | 4.3:+37000413 | None:intergenic |
| TCACTATCATCAGATTGCTC+TGG | 0.502518 | 4.3:+36998737 | None:intergenic |
| TGCAGAAAATAAGGAGCGAC+CGG | 0.506681 | 4.3:-37000562 | MS.gene46888:CDS |
| TAGTGCCAAGTTTGCGCCGA+AGG | 0.506770 | 4.3:-37001816 | MS.gene46888:CDS |
| ATTGAGGTTGGTCTCAGGAA+TGG | 0.510269 | 4.3:+37001685 | None:intergenic |
| ATAGCATCAGTTATTCGTAA+AGG | 0.518506 | 4.3:+36999598 | None:intergenic |
| AAAGTCAAACTCATTGATTG+AGG | 0.522023 | 4.3:-37000983 | MS.gene46888:CDS |
| CATAATCATCCAGCAGAGCC+TGG | 0.529086 | 4.3:+37000628 | None:intergenic |
| TGACTTGTCCCTGAAAGAAT+GGG | 0.530560 | 4.3:+36999914 | None:intergenic |
| CTGTCAAGGAATGCAGTGGA+TGG | 0.545069 | 4.3:+37001482 | None:intergenic |
| CTCTGGACTATGATACGCCA+TGG | 0.555687 | 4.3:+36998754 | None:intergenic |
| AAGATCATCTGTTGCTGGTG+TGG | 0.557955 | 4.3:-37001067 | MS.gene46888:CDS |
| AATGGATTTAGTGACGGTGG+GGG | 0.564034 | 4.3:+37001703 | None:intergenic |
| GGAATGGATTTAGTGACGGT+GGG | 0.575171 | 4.3:+37001701 | None:intergenic |
| GTCAAGGAATGCAGTGGATG+GGG | 0.578734 | 4.3:+37001484 | None:intergenic |
| ATGATAGTGATGATGACTTA+CGG | 0.580140 | 4.3:-36998724 | MS.gene46888:CDS |
| TTGCAAGACAGCCTAAATGT+TGG | 0.580193 | 4.3:-37001431 | MS.gene46888:CDS |
| TTTATTAGGATGCTAATGAG+AGG | 0.585716 | 4.3:-37001113 | MS.gene46888:intron |
| ATCAAAACAGTCCTTACGAA+AGG | 0.590154 | 4.3:-37001789 | MS.gene46888:CDS |
| ACTACTGAAGACATGTCACC+TGG | 0.592887 | 4.3:-36999343 | MS.gene46888:CDS |
| AAATGATGACGAGGACGAAG+TGG | 0.594931 | 4.3:-37000905 | MS.gene46888:CDS |
| GTCTTCAGTAGTGTCTTCAG+TGG | 0.600402 | 4.3:+36999354 | None:intergenic |
| CTTTCAGGGACAAGTCACCT+AGG | 0.604637 | 4.3:-36999908 | MS.gene46888:CDS |
| TGCTGATGTTAAAGATCAGG+AGG | 0.606209 | 4.3:-36998780 | MS.gene46888:CDS |
| CTCAGGAATGGATTTAGTGA+CGG | 0.612639 | 4.3:+37001697 | None:intergenic |
| CAAAGTCTTCCACCAATCGA+AGG | 0.613148 | 4.3:-37000422 | MS.gene46888:intron |
| CTTGAAGCTCCTGCTGCACG+TGG | 0.616756 | 4.3:-37001948 | MS.gene46888:intron |
| TTTCAGGGACAAGTCACCTA+GGG | 0.617228 | 4.3:-36999907 | MS.gene46888:CDS |
| AGGAATGCAGTGGATGGGGA+AGG | 0.617655 | 4.3:+37001488 | None:intergenic |
| GAATGGATTTAGTGACGGTG+GGG | 0.617902 | 4.3:+37001702 | None:intergenic |
| TGTCAAGGAATGCAGTGGAT+GGG | 0.621373 | 4.3:+37001483 | None:intergenic |
| TTCGGCGCAAACTTGGCACT+AGG | 0.622860 | 4.3:+37001818 | None:intergenic |
| ATGACCGTGGTAAAAGCTCA+AGG | 0.624975 | 4.3:-37001041 | MS.gene46888:CDS |
| ATCATCTGTTGCTGGTGTGG+AGG | 0.632127 | 4.3:-37001064 | MS.gene46888:CDS |
| ATATTGTTACAAATATAAGG+AGG | 0.636102 | 4.3:+37000943 | None:intergenic |
| AGGAATGGATTTAGTGACGG+TGG | 0.638656 | 4.3:+37001700 | None:intergenic |
| TAAAGATCAGGAGGATCCCA+TGG | 0.641855 | 4.3:-36998771 | MS.gene46888:CDS |
| AGAAAATAAGGAGCGACCGG+AGG | 0.647366 | 4.3:-37000559 | MS.gene46888:intron |
| GTTGCTGTCAAGGAATGCAG+TGG | 0.651362 | 4.3:+37001478 | None:intergenic |
| TATTGTTACAAATATAAGGA+GGG | 0.653546 | 4.3:+37000944 | None:intergenic |
| TACTTCCGGAAAAGTACAAG+AGG | 0.653833 | 4.3:-37001345 | MS.gene46888:intron |
| TCTGGACTATGATACGCCAT+GGG | 0.656583 | 4.3:+36998755 | None:intergenic |
| AGAGGTTGCAACAACTGAGG+AGG | 0.662600 | 4.3:-36998807 | MS.gene46888:CDS |
| TTATTCGTAAAGGATGATGT+CGG | 0.671321 | 4.3:+36999608 | None:intergenic |
| GGAAGAGGTTGCAACAACTG+AGG | 0.674245 | 4.3:-36998810 | MS.gene46888:CDS |
| TGCTGGTGCTAATAGTGAAG+AGG | 0.679934 | 4.3:-37000027 | MS.gene46888:CDS |
| ACTTGAAGAAAATGATGACG+AGG | 0.685696 | 4.3:-37000914 | MS.gene46888:CDS |
| GCTCTTTCCATCTACAGACG+AGG | 0.706731 | 4.3:+37001742 | None:intergenic |
| TGATGGTTGTAGAGACCAAG+AGG | 0.723191 | 4.3:-36999985 | MS.gene46888:CDS |
| GCTGGTGTGGAGGATGACCG+TGG | 0.747382 | 4.3:-37001054 | MS.gene46888:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAATATAATTGACA+AGG | + | chr4.3:37000432-37000451 | None:intergenic | 10.0% |
| !!! | TTTCATTTGTAATTTTTATT+AGG | - | chr4.3:36999539-36999558 | MS.gene46888:intron | 10.0% |
| !! | AATATAAATCTATTTACTAC+TGG | + | chr4.3:37000573-37000592 | None:intergenic | 15.0% |
| !! | TAAGAAATATTACAATTATG+TGG | + | chr4.3:37001785-37001804 | None:intergenic | 15.0% |
| !! | TCTATATTGTTACAAATATA+AGG | + | chr4.3:36999729-36999748 | None:intergenic | 15.0% |
| !!! | TGTTCATTTTTTTAAAACAT+AGG | - | chr4.3:37000941-37000960 | MS.gene46888:CDS | 15.0% |
| !!! | TTGTTTTGTTTTATATTTTG+AGG | - | chr4.3:37001368-37001387 | MS.gene46888:CDS | 15.0% |
| !! | AAACATAATTACCATTATTG+AGG | + | chr4.3:36999000-36999019 | None:intergenic | 20.0% |
| !! | AAGTTCAAAAAAGAAATATG+TGG | - | chr4.3:36999815-36999834 | MS.gene46888:intron | 20.0% |
| !! | ATATTAGGGTTTAAATTACA+TGG | + | chr4.3:37001569-37001588 | None:intergenic | 20.0% |
| !! | ATATTGTTACAAATATAAGG+AGG | + | chr4.3:36999726-36999745 | None:intergenic | 20.0% |
| !! | GATATTTGTGAGTTAAAATT+TGG | - | chr4.3:37001474-37001493 | MS.gene46888:CDS | 20.0% |
| !! | TATTGTTACAAATATAAGGA+GGG | + | chr4.3:36999725-36999744 | None:intergenic | 20.0% |
| !! | TTCTAAATCTATAAATGAAG+TGG | + | chr4.3:37001747-37001766 | None:intergenic | 20.0% |
| !!! | AGATCATCATATTTTTAAGT+CGG | - | chr4.3:37001241-37001260 | MS.gene46888:intron | 20.0% |
| !!! | ATGATTCAACAAATTTTTTC+TGG | - | chr4.3:37000993-37001012 | MS.gene46888:CDS | 20.0% |
| !!! | ATTACTAATTTTGTCTTTTC+TGG | - | chr4.3:37000876-37000895 | MS.gene46888:CDS | 20.0% |
| !!! | ATTATATTCTTTTTGTAGCT+CGG | - | chr4.3:36998825-36998844 | MS.gene46888:intron | 20.0% |
| !!! | TTTAAAATATTTATCTGCAG+TGG | - | chr4.3:37000598-37000617 | MS.gene46888:CDS | 20.0% |
| ! | AAGAAATATGTGGCTAAAAA+TGG | - | chr4.3:36999825-36999844 | MS.gene46888:intron | 25.0% |
| ! | ATAATTACCATTATTGAGGT+TGG | + | chr4.3:36998996-36999015 | None:intergenic | 25.0% |
| ! | ATATATGTCTTTATTGTGCT+AGG | + | chr4.3:37001721-37001740 | None:intergenic | 25.0% |
| ! | ATATGACGTAAAAACTTTCA+AGG | - | chr4.3:37001690-37001709 | MS.gene46888:CDS | 25.0% |
| ! | ATGATGGTAAATAAGATGTT+TGG | + | chr4.3:37000550-37000569 | None:intergenic | 25.0% |
| ! | CACATATATCTTAACTTCTT+AGG | + | chr4.3:37000342-37000361 | None:intergenic | 25.0% |
| ! | GTTGAATCATTGTAAAATCT+AGG | + | chr4.3:37000983-37001002 | None:intergenic | 25.0% |
| ! | TAAAATGTTATTCCACATCA+AGG | + | chr4.3:37001192-37001211 | None:intergenic | 25.0% |
| ! | TACAAAAAAAGCAAGGAAAA+TGG | - | chr4.3:36999855-36999874 | MS.gene46888:intron | 25.0% |
| ! | TGTAAAAAATCAGCTAATGT+AGG | + | chr4.3:36999418-36999437 | None:intergenic | 25.0% |
| ! | TTCTCAATCAATTTCTCTTA+GGG | - | chr4.3:37000068-37000087 | MS.gene46888:intron | 25.0% |
| !! | AAAAGCATACAAAAAAAGCA+AGG | - | chr4.3:36999848-36999867 | MS.gene46888:intron | 25.0% |
| !! | AATTGTTATTAGTAGGCTTA+TGG | - | chr4.3:37000171-37000190 | MS.gene46888:intron | 25.0% |
| !! | ATTTTGTCTTTTCTGGATTT+AGG | - | chr4.3:37000883-37000902 | MS.gene46888:CDS | 25.0% |
| !! | GAATACCTCATAAAACTTTT+CGG | + | chr4.3:37000806-37000825 | None:intergenic | 25.0% |
| !! | TGAGAATCCATTTTATACAA+GGG | - | chr4.3:37001639-37001658 | MS.gene46888:intron | 25.0% |
| !! | TGTATAAAATGGATTCTCAA+GGG | + | chr4.3:37001638-37001657 | None:intergenic | 25.0% |
| !! | TTGAGAATCCATTTTATACA+AGG | - | chr4.3:37001638-37001657 | MS.gene46888:intron | 25.0% |
| !! | TTGTATAAAATGGATTCTCA+AGG | + | chr4.3:37001639-37001658 | None:intergenic | 25.0% |
| !!! | ATTCATTCCATTTTTACTTC+CGG | - | chr4.3:36999307-36999326 | MS.gene46888:intron | 25.0% |
| !!! | TTTTGAGGTCTATATTCATT+TGG | - | chr4.3:37001383-37001402 | MS.gene46888:CDS | 25.0% |
| AAAATATTTATCTGCAGTGG+TGG | - | chr4.3:37000601-37000620 | MS.gene46888:CDS | 30.0% | |
| AAATCGTGAAAGCTAACAAA+GGG | + | chr4.3:37000405-37000424 | None:intergenic | 30.0% | |
| AAATGTGGTCTCTTATTAGA+TGG | - | chr4.3:36999130-36999149 | MS.gene46888:intron | 30.0% | |
| AAGAGTCTTGAATATTTGCA+AGG | + | chr4.3:37001820-37001839 | None:intergenic | 30.0% | |
| AATGGAATGAATGTTGTTCT+CGG | + | chr4.3:36999299-36999318 | None:intergenic | 30.0% | |
| ATAGCATCAGTTATTCGTAA+AGG | + | chr4.3:37001071-37001090 | None:intergenic | 30.0% | |
| ATATACGCTGCTTCTATATT+AGG | + | chr4.3:37001584-37001603 | None:intergenic | 30.0% | |
| ATCTATTTACTACTGGATGA+TGG | + | chr4.3:37000566-37000585 | None:intergenic | 30.0% | |
| ATGAGAGGAAAAAATCTCTA+AGG | - | chr4.3:36999568-36999587 | MS.gene46888:intron | 30.0% | |
| CATATAGTACATGATCAGTA+GGG | - | chr4.3:37001146-37001165 | MS.gene46888:intron | 30.0% | |
| GAAGTAAATTTGAGTAACGA+AGG | + | chr4.3:37001547-37001566 | None:intergenic | 30.0% | |
| GTCATATCACATATACATGA+TGG | + | chr4.3:37001677-37001696 | None:intergenic | 30.0% | |
| GTGTATTATCAAAGCAGTAT+TGG | - | chr4.3:37000286-37000305 | MS.gene46888:intron | 30.0% | |
| GTTCTCAATCAATTTCTCTT+AGG | - | chr4.3:37000067-37000086 | MS.gene46888:intron | 30.0% | |
| TAAATCGTGAAAGCTAACAA+AGG | + | chr4.3:37000406-37000425 | None:intergenic | 30.0% | |
| TATACGCTGCTTCTATATTA+GGG | + | chr4.3:37001583-37001602 | None:intergenic | 30.0% | |
| TCATATAGTACATGATCAGT+AGG | - | chr4.3:37001145-37001164 | MS.gene46888:intron | 30.0% | |
| TCTTGCAATTGCAGAAAATA+AGG | - | chr4.3:37000095-37000114 | MS.gene46888:intron | 30.0% | |
| TGTTGTTCCCTTGTATAAAA+TGG | + | chr4.3:37001649-37001668 | None:intergenic | 30.0% | |
| TTATTCGTAAAGGATGATGT+CGG | + | chr4.3:37001061-37001080 | None:intergenic | 30.0% | |
| TTCAGATATTTCCTTTCGTA+AGG | + | chr4.3:36998891-36998910 | None:intergenic | 30.0% | |
| TTTATTAGGATGCTAATGAG+AGG | - | chr4.3:36999553-36999572 | MS.gene46888:intron | 30.0% | |
| ! | AAAGTCAAACTCATTGATTG+AGG | - | chr4.3:36999683-36999702 | MS.gene46888:CDS | 30.0% |
| ! | ATGATAGTGATGATGACTTA+CGG | - | chr4.3:37001942-37001961 | MS.gene46888:intron | 30.0% |
| ! | CCAAAATTAGCACTTTTACT+TGG | - | chr4.3:37001515-37001534 | MS.gene46888:CDS | 30.0% |
| ! | GCATTGACAACTATTAAATG+TGG | - | chr4.3:36999115-36999134 | MS.gene46888:intron | 30.0% |
| ! | TACTTTTCCGGAAGTAAAAA+TGG | + | chr4.3:36999317-36999336 | None:intergenic | 30.0% |
| ! | TCCTAGCAATTGTTATTAGT+AGG | - | chr4.3:37000164-37000183 | MS.gene46888:intron | 30.0% |
| !! | AGATACCGAAAAGTTTTATG+AGG | - | chr4.3:37000798-37000817 | MS.gene46888:CDS | 30.0% |
| !!! | ACTTTTAGTTCAGATGATGA+TGG | - | chr4.3:37000664-37000683 | MS.gene46888:intron | 30.0% |
| !!! | CCAAGTAAAAGTGCTAATTT+TGG | + | chr4.3:37001518-37001537 | None:intergenic | 30.0% |
| !!! | TTTTAAAACATAGGCTCTGA+AGG | - | chr4.3:37000950-37000969 | MS.gene46888:CDS | 30.0% |
| AAAAGTTCTCTCGTTCTTCT+CGG | - | chr4.3:36999910-36999929 | MS.gene46888:CDS | 35.0% | |
| ACATACGGTTGTTATGTACT+TGG | - | chr4.3:36998780-36998799 | MS.gene46888:CDS | 35.0% | |
| AGAGTGCATACATTAATTCC+AGG | + | chr4.3:37001344-37001363 | None:intergenic | 35.0% | |
| AGCTAATGTAGGACTATCTA+CGG | + | chr4.3:36999407-36999426 | None:intergenic | 35.0% | |
| ATCAAAACAGTCCTTACGAA+AGG | - | chr4.3:36998877-36998896 | MS.gene46888:intron | 35.0% | |
| ATGCAATTCCCATTCTTTCA+GGG | - | chr4.3:37000744-37000763 | MS.gene46888:CDS | 35.0% | |
| CACATCATTTGCGTATTTGA+AGG | - | chr4.3:36999021-36999040 | MS.gene46888:intron | 35.0% | |
| GCATTAGTGGTAGAAATTTG+TGG | + | chr4.3:37001281-37001300 | None:intergenic | 35.0% | |
| GCCTACTAATAACAATTGCT+AGG | + | chr4.3:37000168-37000187 | None:intergenic | 35.0% | |
| GCTATTAATAGTCGTTCATC+AGG | - | chr4.3:37001086-37001105 | MS.gene46888:CDS | 35.0% | |
| TATGCAATTCCCATTCTTTC+AGG | - | chr4.3:37000743-37000762 | MS.gene46888:CDS | 35.0% | |
| TCGTTGTATGTGATTGAGTT+AGG | - | chr4.3:37000367-37000386 | MS.gene46888:intron | 35.0% | |
| TCTTTATCTACTCCTTGATG+TGG | - | chr4.3:37001177-37001196 | MS.gene46888:intron | 35.0% | |
| TTCTACCACTAATGCAAATC+AGG | - | chr4.3:37001286-37001305 | MS.gene46888:intron | 35.0% | |
| TTGCTAGGAATTGTAACACA+AGG | + | chr4.3:37000153-37000172 | None:intergenic | 35.0% | |
| TTGTTTCCCTATGCAGAAAA+AGG | - | chr4.3:37000218-37000237 | MS.gene46888:intron | 35.0% | |
| TTTCTGCATAGGGAAACAAA+TGG | + | chr4.3:37000217-37000236 | None:intergenic | 35.0% | |
| ! | AACGTTTACTTCTTTTCCTC+AGG | + | chr4.3:36999452-36999471 | None:intergenic | 35.0% |
| ! | AAGTATTTTCATTCCCACAG+TGG | - | chr4.3:37000014-37000033 | MS.gene46888:CDS | 35.0% |
| ! | ACTTGAAGAAAATGATGACG+AGG | - | chr4.3:36999752-36999771 | MS.gene46888:intron | 35.0% |
| ! | AGAAGAACGAGAGAACTTTT+TGG | + | chr4.3:36999910-36999929 | None:intergenic | 35.0% |
| ! | GAAGAACGAGAGAACTTTTT+GGG | + | chr4.3:36999909-36999928 | None:intergenic | 35.0% |
| ! | GTCTTTTCTGGATTTAGGAA+TGG | - | chr4.3:37000888-37000907 | MS.gene46888:CDS | 35.0% |
| ! | TTCTACCTCTTGTACTTTTC+CGG | + | chr4.3:36999329-36999348 | None:intergenic | 35.0% |
| !!! | CACTTTTGAAGCCAACATTT+AGG | + | chr4.3:36999249-36999268 | None:intergenic | 35.0% |
| !!! | GACTGTTTTGATTTGACCTT+CGG | + | chr4.3:36998869-36998888 | None:intergenic | 35.0% |
| AATTCACTGCACATCTTACG+TGG | - | chr4.3:37000522-37000541 | MS.gene46888:intron | 40.0% | |
| ACAAGTCACCTAGGGTAAAA+TGG | - | chr4.3:37000767-37000786 | MS.gene46888:CDS | 40.0% | |
| CGTAAAAGATCATCTGTTGC+TGG | - | chr4.3:36999594-36999613 | MS.gene46888:CDS | 40.0% | |
| CTCTTGTAATCTGAATGTGC+AGG | - | chr4.3:37001835-37001854 | MS.gene46888:intron | 40.0% | |
| CTGCTGGATGATTATGAACT+TGG | - | chr4.3:37000045-37000064 | MS.gene46888:CDS | 40.0% | |
| TAATCTGAATGTGCAGGAAG+AGG | - | chr4.3:37001841-37001860 | MS.gene46888:intron | 40.0% | |
| TAGTTGAGAATACCTACCTC+CGG | + | chr4.3:37000126-37000145 | None:intergenic | 40.0% | |
| TCACTATCATCAGATTGCTC+TGG | + | chr4.3:37001932-37001951 | None:intergenic | 40.0% | |
| TGCTGATGTTAAAGATCAGG+AGG | - | chr4.3:37001886-37001905 | MS.gene46888:intron | 40.0% | |
| TTACAGCAAGATGTTACCTG+AGG | - | chr4.3:36999433-36999452 | MS.gene46888:intron | 40.0% | |
| TTACTTGTCTGTGCTCTTCA+TGG | - | chr4.3:37001122-37001141 | MS.gene46888:intron | 40.0% | |
| TTGCAAGACAGCCTAAATGT+TGG | - | chr4.3:36999235-36999254 | MS.gene46888:intron | 40.0% | |
| TTTCCCTATGCAGAAAAAGG+AGG | - | chr4.3:37000221-37000240 | MS.gene46888:intron | 40.0% | |
| ! | AAAATGGATTCTCAAGGGAG+CGG | + | chr4.3:37001633-37001652 | None:intergenic | 40.0% |
| ! | CTCAGGAATGGATTTAGTGA+CGG | + | chr4.3:36998972-36998991 | None:intergenic | 40.0% |
| ! | GTGATGATGACTTACGGAAA+TGG | - | chr4.3:37001948-37001967 | MS.gene46888:intron | 40.0% |
| ! | TACTAGCTTGATCATCCTCT+TGG | + | chr4.3:37000699-37000718 | None:intergenic | 40.0% |
| ! | TACTTCCGGAAAAGTACAAG+AGG | - | chr4.3:36999321-36999340 | MS.gene46888:intron | 40.0% |
| ! | TGACTTGTCCCTGAAAGAAT+GGG | + | chr4.3:37000755-37000774 | None:intergenic | 40.0% |
| ! | TGTTTCGACCATTTTACCCT+AGG | + | chr4.3:37000778-37000797 | None:intergenic | 40.0% |
| ! | TTGCCTCCTTTTTCTGCATA+GGG | + | chr4.3:37000227-37000246 | None:intergenic | 40.0% |
| ! | TTTGCCTCCTTTTTCTGCAT+AGG | + | chr4.3:37000228-37000247 | None:intergenic | 40.0% |
| !! | CAGTGCTGATGTTAAAGATC+AGG | - | chr4.3:37001883-37001902 | MS.gene46888:intron | 40.0% |
| AAGATCATCTGTTGCTGGTG+TGG | - | chr4.3:36999599-36999618 | MS.gene46888:CDS | 45.0% | |
| ACTACTGAAGACATGTCACC+TGG | - | chr4.3:37001323-37001342 | MS.gene46888:intron | 45.0% | |
| ATGACCGTGGTAAAAGCTCA+AGG | - | chr4.3:36999625-36999644 | MS.gene46888:CDS | 45.0% | |
| CAAAGTCTTCCACCAATCGA+AGG | - | chr4.3:37000244-37000263 | MS.gene46888:intron | 45.0% | |
| CCTGAGACCAACCTCAATAA+TGG | - | chr4.3:36998986-36999005 | MS.gene46888:intron | 45.0% | |
| GGCGATTTCTTTCATGATGC+TGG | - | chr4.3:37000622-37000641 | MS.gene46888:CDS | 45.0% | |
| GTCTTCAGTAGTGTCTTCAG+TGG | + | chr4.3:37001315-37001334 | None:intergenic | 45.0% | |
| TAAAGATCAGGAGGATCCCA+TGG | - | chr4.3:37001895-37001914 | MS.gene46888:intron | 45.0% | |
| TCTCGGCGAAGAAAAAGACA+AGG | - | chr4.3:36999927-36999946 | MS.gene46888:CDS | 45.0% | |
| TCTGGACTATGATACGCCAT+GGG | + | chr4.3:37001914-37001933 | None:intergenic | 45.0% | |
| TGATGGTTGTAGAGACCAAG+AGG | - | chr4.3:37000681-37000700 | MS.gene46888:intron | 45.0% | |
| TGCAGAAAATAAGGAGCGAC+CGG | - | chr4.3:37000104-37000123 | MS.gene46888:intron | 45.0% | |
| TGCTGCACGTGGTTAGTAAT+GGG | - | chr4.3:36998729-36998748 | MS.gene46888:CDS | 45.0% | |
| TGTCAAGGAATGCAGTGGAT+GGG | + | chr4.3:36999186-36999205 | None:intergenic | 45.0% | |
| TTTCAGGGACAAGTCACCTA+GGG | - | chr4.3:37000759-37000778 | MS.gene46888:CDS | 45.0% | |
| ! | AAATGATGACGAGGACGAAG+TGG | - | chr4.3:36999761-36999780 | MS.gene46888:intron | 45.0% |
| ! | AAATGGATTCTCAAGGGAGC+GGG | + | chr4.3:37001632-37001651 | None:intergenic | 45.0% |
| ! | AATGGATTTAGTGACGGTGG+GGG | + | chr4.3:36998966-36998985 | None:intergenic | 45.0% |
| ! | AGGAATGGATTTAGTGACGG+TGG | + | chr4.3:36998969-36998988 | None:intergenic | 45.0% |
| ! | GAATGGATTTAGTGACGGTG+GGG | + | chr4.3:36998967-36998986 | None:intergenic | 45.0% |
| ! | GCACACTTTTGTTGCTGTCA+AGG | + | chr4.3:36999201-36999220 | None:intergenic | 45.0% |
| ! | GGAATGGATTTAGTGACGGT+GGG | + | chr4.3:36998968-36998987 | None:intergenic | 45.0% |
| ! | GGCTTCCTGATTTGCATTAG+TGG | + | chr4.3:37001294-37001313 | None:intergenic | 45.0% |
| ! | GTGACTTGTCCCTGAAAGAA+TGG | + | chr4.3:37000756-37000775 | None:intergenic | 45.0% |
| ! | TGCTGGTGCTAATAGTGAAG+AGG | - | chr4.3:37000639-37000658 | MS.gene46888:intron | 45.0% |
| ! | TGTTGCTTACCTTCGATTGG+TGG | + | chr4.3:37000256-37000275 | None:intergenic | 45.0% |
| !! | ACATAGGCTCTGAAGGAGTT+TGG | - | chr4.3:37000957-37000976 | MS.gene46888:CDS | 45.0% |
| !! | ATTGAGGTTGGTCTCAGGAA+TGG | + | chr4.3:36998984-36999003 | None:intergenic | 45.0% |
| !! | CCATTATTGAGGTTGGTCTC+AGG | + | chr4.3:36998989-36999008 | None:intergenic | 45.0% |
| !! | CTGTGTTGCTTACCTTCGAT+TGG | + | chr4.3:37000259-37000278 | None:intergenic | 45.0% |
| !! | GAACGAGAGAACTTTTTGGG+TGG | + | chr4.3:36999906-36999925 | None:intergenic | 45.0% |
| !! | GTTGGCTTCAAAAGTGCTTC+AGG | - | chr4.3:36999253-36999272 | MS.gene46888:intron | 45.0% |
| !!! | TTTTTTTTTTTTTATACATA+CGG | - | chr4.3:36998765-36998784 | MS.gene46888:CDS | 5.0% |
| AGAAAATAAGGAGCGACCGG+AGG | - | chr4.3:37000107-37000126 | MS.gene46888:intron | 50.0% | |
| AGAGGTTGCAACAACTGAGG+AGG | - | chr4.3:37001859-37001878 | MS.gene46888:intron | 50.0% | |
| ATCATCTGTTGCTGGTGTGG+AGG | - | chr4.3:36999602-36999621 | MS.gene46888:CDS | 50.0% | |
| CATAATCATCCAGCAGAGCC+TGG | + | chr4.3:37000041-37000060 | None:intergenic | 50.0% | |
| CATGCTACCTCGTCTGTAGA+TGG | - | chr4.3:36998917-36998936 | MS.gene46888:intron | 50.0% | |
| CATTACTAACCACGTGCAGC+AGG | + | chr4.3:36998730-36998749 | None:intergenic | 50.0% | |
| CTCTGGACTATGATACGCCA+TGG | + | chr4.3:37001915-37001934 | None:intergenic | 50.0% | |
| CTGCTGCACGTGGTTAGTAA+TGG | - | chr4.3:36998728-36998747 | MS.gene46888:CDS | 50.0% | |
| CTGTCAAGGAATGCAGTGGA+TGG | + | chr4.3:36999187-36999206 | None:intergenic | 50.0% | |
| CTTTCAGGGACAAGTCACCT+AGG | - | chr4.3:37000758-37000777 | MS.gene46888:CDS | 50.0% | |
| GCTCTTTCCATCTACAGACG+AGG | + | chr4.3:36998927-36998946 | None:intergenic | 50.0% | |
| GGAAGAGGTTGCAACAACTG+AGG | - | chr4.3:37001856-37001875 | MS.gene46888:intron | 50.0% | |
| GTCAAGGAATGCAGTGGATG+GGG | + | chr4.3:36999185-36999204 | None:intergenic | 50.0% | |
| GTTGCTGTCAAGGAATGCAG+TGG | + | chr4.3:36999191-36999210 | None:intergenic | 50.0% | |
| TTTCATTCCCACAGTGGACC+AGG | - | chr4.3:37000020-37000039 | MS.gene46888:CDS | 50.0% | |
| TTTGACCTTCGGCGCAAACT+TGG | + | chr4.3:36998858-36998877 | None:intergenic | 50.0% | |
| ! | AATGGATTCTCAAGGGAGCG+GGG | + | chr4.3:37001631-37001650 | None:intergenic | 50.0% |
| ! | GCTGCCTTGAGCTTTTACCA+CGG | + | chr4.3:36999632-36999651 | None:intergenic | 50.0% |
| AATAAGGAGCGACCGGAGGT+AGG | - | chr4.3:37000111-37000130 | MS.gene46888:intron | 55.0% | |
| AGGAATGCAGTGGATGGGGA+AGG | + | chr4.3:36999181-36999200 | None:intergenic | 55.0% | |
| ATGGATTCTCAAGGGAGCGG+GGG | + | chr4.3:37001630-37001649 | None:intergenic | 55.0% | |
| TAGTGCCAAGTTTGCGCCGA+AGG | - | chr4.3:36998850-36998869 | MS.gene46888:intron | 55.0% | |
| TTCGGCGCAAACTTGGCACT+AGG | + | chr4.3:36998851-36998870 | None:intergenic | 55.0% | |
| AGCAGAGCCTGGTCCACTGT+GGG | + | chr4.3:37000030-37000049 | None:intergenic | 60.0% | |
| CTTGAAGCTCCTGCTGCACG+TGG | - | chr4.3:36998718-36998737 | MS.gene46888:CDS | 60.0% | |
| CACAGTGGACCAGGCTCTGC+TGG | - | chr4.3:37000029-37000048 | MS.gene46888:CDS | 65.0% | |
| CAGCAGAGCCTGGTCCACTG+TGG | + | chr4.3:37000031-37000050 | None:intergenic | 65.0% | |
| GCTGGTGTGGAGGATGACCG+TGG | - | chr4.3:36999612-36999631 | MS.gene46888:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 36998694 | 37001994 | 36998694 | ID=MS.gene46888 |
| chr4.3 | mRNA | 36998694 | 37001994 | 36998694 | ID=MS.gene46888.t1;Parent=MS.gene46888 |
| chr4.3 | exon | 37001949 | 37001994 | 37001949 | ID=MS.gene46888.t1.exon1;Parent=MS.gene46888.t1 |
| chr4.3 | CDS | 37001949 | 37001994 | 37001949 | ID=cds.MS.gene46888.t1;Parent=MS.gene46888.t1 |
| chr4.3 | exon | 37001681 | 37001845 | 37001681 | ID=MS.gene46888.t1.exon2;Parent=MS.gene46888.t1 |
| chr4.3 | CDS | 37001681 | 37001845 | 37001681 | ID=cds.MS.gene46888.t1;Parent=MS.gene46888.t1 |
| chr4.3 | exon | 37001346 | 37001539 | 37001346 | ID=MS.gene46888.t1.exon3;Parent=MS.gene46888.t1 |
| chr4.3 | CDS | 37001346 | 37001539 | 37001346 | ID=cds.MS.gene46888.t1;Parent=MS.gene46888.t1 |
| chr4.3 | exon | 37000740 | 37001127 | 37000740 | ID=MS.gene46888.t1.exon4;Parent=MS.gene46888.t1 |
| chr4.3 | CDS | 37000740 | 37001127 | 37000740 | ID=cds.MS.gene46888.t1;Parent=MS.gene46888.t1 |
| chr4.3 | exon | 37000560 | 37000654 | 37000560 | ID=MS.gene46888.t1.exon5;Parent=MS.gene46888.t1 |
| chr4.3 | CDS | 37000560 | 37000654 | 37000560 | ID=cds.MS.gene46888.t1;Parent=MS.gene46888.t1 |
| chr4.3 | exon | 37000423 | 37000454 | 37000423 | ID=MS.gene46888.t1.exon6;Parent=MS.gene46888.t1 |
| chr4.3 | CDS | 37000423 | 37000454 | 37000423 | ID=cds.MS.gene46888.t1;Parent=MS.gene46888.t1 |
| chr4.3 | exon | 36999869 | 37000070 | 36999869 | ID=MS.gene46888.t1.exon7;Parent=MS.gene46888.t1 |
| chr4.3 | CDS | 36999869 | 37000070 | 36999869 | ID=cds.MS.gene46888.t1;Parent=MS.gene46888.t1 |
| chr4.3 | exon | 36999581 | 36999725 | 36999581 | ID=MS.gene46888.t1.exon8;Parent=MS.gene46888.t1 |
| chr4.3 | CDS | 36999581 | 36999725 | 36999581 | ID=cds.MS.gene46888.t1;Parent=MS.gene46888.t1 |
| chr4.3 | exon | 36999336 | 36999445 | 36999336 | ID=MS.gene46888.t1.exon9;Parent=MS.gene46888.t1 |
| chr4.3 | CDS | 36999336 | 36999445 | 36999336 | ID=cds.MS.gene46888.t1;Parent=MS.gene46888.t1 |
| chr4.3 | exon | 36998694 | 36998831 | 36998694 | ID=MS.gene46888.t1.exon10;Parent=MS.gene46888.t1 |
| chr4.3 | CDS | 36998694 | 36998831 | 36998694 | ID=cds.MS.gene46888.t1;Parent=MS.gene46888.t1 |
| Gene Sequence |
| Protein sequence |
