Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46915.t1 | AES60572.1 | 78.9 | 308 | 22 | 1 | 1 | 308 | 1 | 265 | 7.80E-125 | 456.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46915.t1 | A7MB47 | 59.4 | 192 | 78 | 0 | 105 | 296 | 51 | 242 | 3.4e-60 | 233.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46915.t1 | G7I8I6 | 78.9 | 308 | 22 | 1 | 1 | 308 | 1 | 265 | 5.6e-125 | 456.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene46915.t1 | TR | Rcd1-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46915.t1 | MTR_1g056470 | 93.701 | 254 | 16 | 0 | 55 | 308 | 12 | 265 | 7.75e-176 | 487 |
| MS.gene46915.t1 | MTR_3g018640 | 65.385 | 234 | 81 | 0 | 63 | 296 | 24 | 257 | 9.44e-112 | 326 |
| MS.gene46915.t1 | MTR_3g053170 | 69.091 | 220 | 68 | 0 | 77 | 296 | 26 | 245 | 8.38e-106 | 311 |
| MS.gene46915.t1 | MTR_6g065170 | 61.217 | 263 | 95 | 2 | 51 | 306 | 7 | 269 | 3.80e-105 | 310 |
| MS.gene46915.t1 | MTR_8g106940 | 60.076 | 263 | 98 | 2 | 51 | 306 | 7 | 269 | 1.21e-104 | 308 |
| MS.gene46915.t1 | MTR_5g093460 | 63.913 | 230 | 82 | 1 | 67 | 296 | 157 | 385 | 4.09e-100 | 301 |
| MS.gene46915.t1 | MTR_5g093460 | 70.455 | 132 | 38 | 1 | 73 | 204 | 1 | 131 | 8.05e-55 | 184 |
| MS.gene46915.t1 | MTR_1g043540 | 58.824 | 119 | 48 | 1 | 181 | 299 | 9 | 126 | 9.20e-41 | 139 |
| MS.gene46915.t1 | MTR_1g043500 | 47.619 | 63 | 32 | 1 | 235 | 296 | 3 | 65 | 4.48e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46915.t1 | AT3G20800 | 65.289 | 242 | 78 | 2 | 61 | 296 | 17 | 258 | 6.86e-106 | 311 |
| MS.gene46915.t1 | AT5G12980 | 64.889 | 225 | 79 | 0 | 72 | 296 | 30 | 254 | 4.62e-101 | 299 |
| MS.gene46915.t1 | AT2G32550 | 36.111 | 216 | 124 | 4 | 92 | 296 | 67 | 279 | 7.24e-37 | 134 |
| MS.gene46915.t1 | AT2G32550 | 36.098 | 205 | 117 | 4 | 103 | 296 | 39 | 240 | 9.68e-36 | 130 |
| MS.gene46915.t1 | AT2G32550 | 35.294 | 187 | 107 | 4 | 121 | 296 | 2 | 185 | 1.05e-30 | 115 |
Find 57 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCTTCATTTGCTCTCTA+AGG | 0.219918 | 1.1:-43968511 | MS.gene46915:intron |
| CTAACTTACTTGATGTATTA+AGG | 0.245270 | 1.1:+43965958 | None:intergenic |
| TGCCTACGCAATATGGAAAT+TGG | 0.348006 | 1.1:-43965699 | MS.gene46915:CDS |
| GCCGTTGTGCCTACGCAATA+TGG | 0.352059 | 1.1:-43965706 | MS.gene46915:CDS |
| CAATACCCTTGCTCTACTTC+AGG | 0.386132 | 1.1:-43966971 | MS.gene46915:intron |
| AGGAAGGGATACAAATATAT+AGG | 0.402029 | 1.1:+43965978 | None:intergenic |
| GATTTAAGACTTGCGAGTCT+TGG | 0.402589 | 1.1:-43965924 | MS.gene46915:CDS |
| ATGAATGAAAACTTTGTGTC+AGG | 0.407209 | 1.1:+43966793 | None:intergenic |
| TAAGATGGTGGAGTTGGGTT+CGG | 0.407226 | 1.1:+43965335 | None:intergenic |
| CCGTTATTGTGGAATTCAAT+TGG | 0.431635 | 1.1:-43967495 | MS.gene46915:CDS |
| TTCTTCAAGGAGGGTGATTG+AGG | 0.449123 | 1.1:+43969754 | None:intergenic |
| TTTGTCAGATGATGATGGTT+TGG | 0.451681 | 1.1:-43965510 | MS.gene46915:CDS |
| AGCACTTAAGATGGTGGAGT+TGG | 0.458933 | 1.1:+43965329 | None:intergenic |
| TGCTCTTCATTTGCTCTCCA+AGG | 0.461860 | 1.1:-43969626 | MS.gene46915:intron |
| GTGCTGGAGGCAGATGTAAC+AGG | 0.465456 | 1.1:+43968603 | None:intergenic |
| GTGCTGGAGGCAGATGTAAC+AGG | 0.465456 | 1.1:+43969718 | None:intergenic |
| CATCTTGTTGCCAATGGTGC+TGG | 0.465484 | 1.1:+43968587 | None:intergenic |
| CATCTTGTTGCCAATGGTGC+TGG | 0.465484 | 1.1:+43969702 | None:intergenic |
| CAGTTGGTCGAGCTTTGGAC+AGG | 0.472419 | 1.1:-43965454 | MS.gene46915:CDS |
| GCACTTAAGATGGTGGAGTT+GGG | 0.483872 | 1.1:+43965330 | None:intergenic |
| CATATTCGAGTTGATTGTGC+AGG | 0.487517 | 1.1:+43966994 | None:intergenic |
| GCAAGTCTTAAATCTTCAAA+TGG | 0.494179 | 1.1:+43965933 | None:intergenic |
| ACATCTGCCTCCAGCACCAT+TGG | 0.494495 | 1.1:-43968597 | MS.gene46915:CDS |
| ACATCTGCCTCCAGCACCAT+TGG | 0.494495 | 1.1:-43969712 | MS.gene46915:CDS |
| AAGAACTCGCACCGTTATTG+TGG | 0.506453 | 1.1:-43967506 | MS.gene46915:CDS |
| CTTACTTGATGTATTAAGGA+AGG | 0.509839 | 1.1:+43965962 | None:intergenic |
| TCTTCAAGGAGGGTGATTGA+GGG | 0.516540 | 1.1:+43969755 | None:intergenic |
| CCAATTGAATTCCACAATAA+CGG | 0.522825 | 1.1:+43967495 | None:intergenic |
| TCGAGCTTTGGACAGGATGT+TGG | 0.529344 | 1.1:-43965447 | MS.gene46915:CDS |
| ATATTCACAGGTTAAGACTA+AGG | 0.533680 | 1.1:-43965763 | MS.gene46915:intron |
| TTACTTGATGTATTAAGGAA+GGG | 0.537664 | 1.1:+43965963 | None:intergenic |
| AGTCATTGCTGCCATGGTAA+AGG | 0.543352 | 1.1:-43965901 | MS.gene46915:intron |
| AATTCATTATTCTTCAAGGA+GGG | 0.558130 | 1.1:+43969745 | None:intergenic |
| TTCAAGGAGGGTGATTGAGG+GGG | 0.561905 | 1.1:+43969757 | None:intergenic |
| TCTTGGAGTCATTGCTGCCA+TGG | 0.568265 | 1.1:-43965907 | MS.gene46915:CDS |
| AGCTTTAAAAGACGAGGTGA+AGG | 0.570450 | 1.1:+43965407 | None:intergenic |
| AATGGAGGAAGCACTTAAGA+TGG | 0.575343 | 1.1:+43965320 | None:intergenic |
| ATCTCACCTGAAGTAGAGCA+AGG | 0.580182 | 1.1:+43966965 | None:intergenic |
| TCAAGGAGGGTGATTGAGGG+GGG | 0.591467 | 1.1:+43969758 | None:intergenic |
| GCATTACTTCAGTTGCGAGA+AGG | 0.595531 | 1.1:+43965727 | None:intergenic |
| TGAATGAAAACTTTGTGTCA+GGG | 0.602907 | 1.1:+43966794 | None:intergenic |
| TGCCAATTTCCATATTGCGT+AGG | 0.604311 | 1.1:+43965697 | None:intergenic |
| ATACAACATCTTGTTGCCAA+TGG | 0.605197 | 1.1:+43968581 | None:intergenic |
| GTACAACATCTTGTTGCCAA+TGG | 0.613212 | 1.1:+43969696 | None:intergenic |
| CTTGTTGCCAATGGTGCTGG+AGG | 0.622571 | 1.1:+43968590 | None:intergenic |
| CTTGTTGCCAATGGTGCTGG+AGG | 0.622571 | 1.1:+43969705 | None:intergenic |
| GGAGGAAGCACTTAAGATGG+TGG | 0.625431 | 1.1:+43965323 | None:intergenic |
| TCCATATTGCGTAGGCACAA+CGG | 0.628181 | 1.1:+43965705 | None:intergenic |
| GTTAAGACTAAGGAAGCGAT+AGG | 0.628788 | 1.1:-43965753 | MS.gene46915:CDS |
| AAATTCATTATTCTTCAAGG+AGG | 0.632490 | 1.1:+43969744 | None:intergenic |
| ATAGAATAATACCTTTACCA+TGG | 0.642599 | 1.1:+43965890 | None:intergenic |
| CTTCAAGGAGGGTGATTGAG+GGG | 0.647804 | 1.1:+43969756 | None:intergenic |
| TCTCACCTGAAGTAGAGCAA+GGG | 0.652890 | 1.1:+43966966 | None:intergenic |
| ATCATAAGCTTTAAAAGACG+AGG | 0.660763 | 1.1:+43965401 | None:intergenic |
| TTTGTGAGACTTGTATAACA+CGG | 0.661280 | 1.1:+43965377 | None:intergenic |
| TGAAAACTTTGTGTCAGGGT+GGG | 0.675917 | 1.1:+43966798 | None:intergenic |
| ATGAAAACTTTGTGTCAGGG+TGG | 0.707370 | 1.1:+43966797 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATAATAAAAGAGT+CGG | - | chr1.1:43966159-43966178 | MS.gene46915:intron | 10.0% |
| !! | ATTGAGTAAAAAAATATAAA+TGG | + | chr1.1:43966789-43966808 | None:intergenic | 10.0% |
| !! | GTATATAAAGAAAATAAAAA+TGG | + | chr1.1:43968229-43968248 | None:intergenic | 10.0% |
| !! | TGAGTAAAAAAAATATAAAT+GGG | + | chr1.1:43965667-43965686 | None:intergenic | 10.0% |
| !! | TTGAGTAAAAAAAATATAAA+TGG | + | chr1.1:43965668-43965687 | None:intergenic | 10.0% |
| !! | TTGAGTAAAAAAATATAAAT+GGG | + | chr1.1:43966788-43966807 | None:intergenic | 10.0% |
| !!! | ATTTTTTATAAGAAATACAA+GGG | - | chr1.1:43968987-43969006 | MS.gene46915:intron | 10.0% |
| !!! | GAAAAATGAAAATTTTAATT+AGG | - | chr1.1:43965772-43965791 | MS.gene46915:intron | 10.0% |
| !!! | GATTAACATAATATTTTTTT+TGG | + | chr1.1:43966011-43966030 | None:intergenic | 10.0% |
| !!! | TATTTTTTATAAGAAATACA+AGG | - | chr1.1:43968986-43969005 | MS.gene46915:intron | 10.0% |
| !! | AAAAAATTCATTATTCTTCA+AGG | + | chr1.1:43965365-43965384 | None:intergenic | 15.0% |
| !! | AAAATTAAAATTTCACTTCA+TGG | + | chr1.1:43968037-43968056 | None:intergenic | 15.0% |
| !! | AAATATTTGTGTTAACAAAT+AGG | + | chr1.1:43967777-43967796 | None:intergenic | 15.0% |
| !! | ATAAAAATAATAAAAGAGTC+GGG | - | chr1.1:43966160-43966179 | MS.gene46915:intron | 15.0% |
| !! | GAGTAAAAAAAATATAAATG+GGG | + | chr1.1:43965666-43965685 | None:intergenic | 15.0% |
| !! | TGAGTAAAAAAATATAAATG+GGG | + | chr1.1:43966787-43966806 | None:intergenic | 15.0% |
| !! | TTCTTTATTCTCTAATAAAA+TGG | - | chr1.1:43968746-43968765 | MS.gene46915:intron | 15.0% |
| !!! | AATGATATTTTTGGTAAAAT+AGG | - | chr1.1:43965964-43965983 | MS.gene46915:CDS | 15.0% |
| !!! | ATGATATTTTTGGTAAAATA+GGG | - | chr1.1:43965965-43965984 | MS.gene46915:CDS | 15.0% |
| !!! | ATTTTATTAGAGAATAAAGA+AGG | + | chr1.1:43968747-43968766 | None:intergenic | 15.0% |
| !!! | TATTTTACAATTGTGTTTAT+TGG | - | chr1.1:43967997-43968016 | MS.gene46915:intron | 15.0% |
| !!! | TTTTTTATAAGAAATACAAG+GGG | - | chr1.1:43968988-43969007 | MS.gene46915:intron | 15.0% |
| !! | AAGAAATACATGTAGTTATA+GGG | - | chr1.1:43967134-43967153 | MS.gene46915:intron | 20.0% |
| !! | AATTCTTACAAAATACCAAA+TGG | + | chr1.1:43965696-43965715 | None:intergenic | 20.0% |
| !! | ATTATGTGAAATTGATAAGT+AGG | + | chr1.1:43968382-43968401 | None:intergenic | 20.0% |
| !! | ATTTCATTAGGAGTTATAAT+TGG | + | chr1.1:43969531-43969550 | None:intergenic | 20.0% |
| !! | GATAAAAAAATTTAGATGAG+TGG | + | chr1.1:43968674-43968693 | None:intergenic | 20.0% |
| !! | TAAAAATAATAAAAGAGTCG+GGG | - | chr1.1:43966161-43966180 | MS.gene46915:intron | 20.0% |
| !! | TTAACGCATATAAGAATATT+TGG | + | chr1.1:43967012-43967031 | None:intergenic | 20.0% |
| !! | TTTATAATTGCTAGAAATGA+CGG | - | chr1.1:43968534-43968553 | MS.gene46915:CDS | 20.0% |
| !!! | AAAGTTTTGTATCTTGTTTA+AGG | - | chr1.1:43968173-43968192 | MS.gene46915:intron | 20.0% |
| !!! | ATAGATATCATTGATTTCAA+TGG | - | chr1.1:43967383-43967402 | MS.gene46915:intron | 20.0% |
| !!! | ATGAAAAACAACATTGATTT+AGG | - | chr1.1:43966070-43966089 | MS.gene46915:intron | 20.0% |
| !!! | ATTCTTTTATTAACTAGCTT+TGG | - | chr1.1:43967032-43967051 | MS.gene46915:CDS | 20.0% |
| !!! | CAAATATTTTTCCCTAAAAA+TGG | + | chr1.1:43965872-43965891 | None:intergenic | 20.0% |
| !!! | TACTATTGCAATATTTTTAC+AGG | - | chr1.1:43967631-43967650 | MS.gene46915:intron | 20.0% |
| !!! | TGAAATTTTAATTTTCTCTC+AGG | - | chr1.1:43968042-43968061 | MS.gene46915:intron | 20.0% |
| !!! | TGATATTTTTGGTAAAATAG+GGG | - | chr1.1:43965966-43965985 | MS.gene46915:CDS | 20.0% |
| !!! | TGGCTTTTTTTGTATAAAAA+TGG | - | chr1.1:43968766-43968785 | MS.gene46915:intron | 20.0% |
| !!! | TGTAGTTTTTATCAAAATTG+TGG | + | chr1.1:43969471-43969490 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTAATATCTTCA+TGG | + | chr1.1:43968448-43968467 | None:intergenic | 20.0% |
| !!! | TTTGGTATTTTGTAAGAATT+AGG | - | chr1.1:43965696-43965715 | MS.gene46915:CDS | 20.0% |
| !!! | TTTTTCCTATATATCATTCA+GGG | - | chr1.1:43965811-43965830 | MS.gene46915:intron | 20.0% |
| !!! | TTTTTTCCTATATATCATTC+AGG | - | chr1.1:43965810-43965829 | MS.gene46915:intron | 20.0% |
| ! | AAATAAATCTCATCCATCAA+TGG | - | chr1.1:43966430-43966449 | MS.gene46915:intron | 25.0% |
| ! | AAATTCATTATTCTTCAAGG+AGG | + | chr1.1:43965362-43965381 | None:intergenic | 25.0% |
| ! | AATTCATTATTCTTCAAGGA+GGG | + | chr1.1:43965361-43965380 | None:intergenic | 25.0% |
| ! | AGAAATACATGTAGTTATAG+GGG | - | chr1.1:43967135-43967154 | MS.gene46915:intron | 25.0% |
| ! | AGTGATATACACATTTCATT+AGG | + | chr1.1:43969543-43969562 | None:intergenic | 25.0% |
| ! | ATAGAATAATACCTTTACCA+TGG | + | chr1.1:43969216-43969235 | None:intergenic | 25.0% |
| ! | ATGAGTGGAATAATATCTAA+GGG | + | chr1.1:43968659-43968678 | None:intergenic | 25.0% |
| ! | CATACATCTTTCAATTTATG+GGG | - | chr1.1:43965508-43965527 | MS.gene46915:CDS | 25.0% |
| ! | CCATAAATTGAAAGATGTAT+GGG | + | chr1.1:43965509-43965528 | None:intergenic | 25.0% |
| ! | CCATACATCTTTCAATTTAT+GGG | - | chr1.1:43965507-43965526 | MS.gene46915:CDS | 25.0% |
| ! | CTAACTTACTTGATGTATTA+AGG | + | chr1.1:43969148-43969167 | None:intergenic | 25.0% |
| ! | GAACAATGAAATATGAAGTT+AGG | - | chr1.1:43967199-43967218 | MS.gene46915:intron | 25.0% |
| ! | GAAGAAATACATGTAGTTAT+AGG | - | chr1.1:43967133-43967152 | MS.gene46915:intron | 25.0% |
| ! | GAATTTCAACTTTCTTTATG+TGG | - | chr1.1:43966212-43966231 | MS.gene46915:intron | 25.0% |
| ! | GTTTACATTGAAAAGAACAA+AGG | + | chr1.1:43967826-43967845 | None:intergenic | 25.0% |
| ! | GTTTCATCATGATAAAATCA+TGG | + | chr1.1:43967107-43967126 | None:intergenic | 25.0% |
| ! | TAAATGTGAATACTCTCTAT+AGG | - | chr1.1:43965604-43965623 | MS.gene46915:intron | 25.0% |
| ! | TAAATGTGAATACTCTCTAT+GGG | - | chr1.1:43965604-43965623 | MS.gene46915:intron | 25.0% |
| ! | TGGAAACATAAGACATAAAA+TGG | + | chr1.1:43967802-43967821 | None:intergenic | 25.0% |
| ! | TTAAATGTGAATACTCTCTA+TGG | - | chr1.1:43965603-43965622 | MS.gene46915:intron | 25.0% |
| ! | TTACTTGATGTATTAAGGAA+GGG | + | chr1.1:43969143-43969162 | None:intergenic | 25.0% |
| ! | TTAGGGAAAAATATTTGAGT+TGG | - | chr1.1:43965875-43965894 | MS.gene46915:intron | 25.0% |
| ! | TTTACAATTGTGTTTATTGG+TGG | - | chr1.1:43968000-43968019 | MS.gene46915:intron | 25.0% |
| !! | AAAACTTGAATTTTGAACTG+GGG | - | chr1.1:43965933-43965952 | MS.gene46915:CDS | 25.0% |
| !! | AAAATTTTGTCAGATGATGA+TGG | - | chr1.1:43969588-43969607 | MS.gene46915:intron | 25.0% |
| !! | AAATATGTCACATAAGTTGA+TGG | - | chr1.1:43968620-43968639 | MS.gene46915:CDS | 25.0% |
| !! | ACAAAGTTTTCATTCATGAA+AGG | - | chr1.1:43968316-43968335 | MS.gene46915:intron | 25.0% |
| !! | AGTTTTTATCAAAATTGTGG+TGG | + | chr1.1:43969468-43969487 | None:intergenic | 25.0% |
| !! | ATTGGTAACTAAATTACAAG+TGG | + | chr1.1:43969513-43969532 | None:intergenic | 25.0% |
| !! | ATTTTGTAAGAATTAGGATG+CGG | - | chr1.1:43965702-43965721 | MS.gene46915:CDS | 25.0% |
| !! | CAAAACTTGAATTTTGAACT+GGG | - | chr1.1:43965932-43965951 | MS.gene46915:CDS | 25.0% |
| !! | TAGGGAAAAATATTTGAGTT+GGG | - | chr1.1:43965876-43965895 | MS.gene46915:intron | 25.0% |
| !! | TCAAATGTTGTCTTTTTATG+AGG | + | chr1.1:43969045-43969064 | None:intergenic | 25.0% |
| !! | TTTATATTTTCACAAACGTC+TGG | - | chr1.1:43968921-43968940 | MS.gene46915:intron | 25.0% |
| !! | TTTTACTCAATTCAACCATT+TGG | - | chr1.1:43965678-43965697 | MS.gene46915:intron | 25.0% |
| !!! | AATCCATTTCTAAAATCACT+TGG | - | chr1.1:43967421-43967440 | MS.gene46915:intron | 25.0% |
| !!! | ATATAGCTTTTTGACTCATT+TGG | + | chr1.1:43965736-43965755 | None:intergenic | 25.0% |
| !!! | ATCCATTTCTAAAATCACTT+GGG | - | chr1.1:43967422-43967441 | MS.gene46915:intron | 25.0% |
| !!! | CAAAGCTTTGAATGATATAT+AGG | + | chr1.1:43966939-43966958 | None:intergenic | 25.0% |
| !!! | TATAGCTTTTTGACTCATTT+GGG | + | chr1.1:43965735-43965754 | None:intergenic | 25.0% |
| !!! | TTATCTTGTTGCCATTTTTA+GGG | - | chr1.1:43965858-43965877 | MS.gene46915:intron | 25.0% |
| !!! | TTTATCTTGTTGCCATTTTT+AGG | - | chr1.1:43965857-43965876 | MS.gene46915:intron | 25.0% |
| AAAGTGACTTAATATTGACG+AGG | - | chr1.1:43967873-43967892 | MS.gene46915:intron | 30.0% | |
| AAGTGACTTAATATTGACGA+GGG | - | chr1.1:43967874-43967893 | MS.gene46915:intron | 30.0% | |
| ACAAGTCTCACAAAAAATGT+AGG | - | chr1.1:43969735-43969754 | MS.gene46915:CDS | 30.0% | |
| ACATTGAAAAGAACAAAGGT+TGG | + | chr1.1:43967822-43967841 | None:intergenic | 30.0% | |
| AGGAAGGGATACAAATATAT+AGG | + | chr1.1:43969128-43969147 | None:intergenic | 30.0% | |
| ATATTCACAGGTTAAGACTA+AGG | - | chr1.1:43969340-43969359 | MS.gene46915:intron | 30.0% | |
| ATGAATGAAAACTTTGTGTC+AGG | + | chr1.1:43968313-43968332 | None:intergenic | 30.0% | |
| CAAGTCTCACAAAAAATGTA+GGG | - | chr1.1:43969736-43969755 | MS.gene46915:CDS | 30.0% | |
| CCAATTGAATTCCACAATAA+CGG | + | chr1.1:43967611-43967630 | None:intergenic | 30.0% | |
| CCCATAAATTGAAAGATGTA+TGG | + | chr1.1:43965510-43965529 | None:intergenic | 30.0% | |
| CCCATACATCTTTCAATTTA+TGG | - | chr1.1:43965506-43965525 | MS.gene46915:CDS | 30.0% | |
| CTTACTTGATGTATTAAGGA+AGG | + | chr1.1:43969144-43969163 | None:intergenic | 30.0% | |
| GAATTGTGAAAGTAAAAGGT+TGG | + | chr1.1:43967848-43967867 | None:intergenic | 30.0% | |
| GAGGGAAAGTTAAAACTAAA+TGG | - | chr1.1:43967892-43967911 | MS.gene46915:intron | 30.0% | |
| GAGTGTGAATATAAGGAAAA+AGG | - | chr1.1:43967169-43967188 | MS.gene46915:intron | 30.0% | |
| GATATACCAACTACAAAGTA+AGG | - | chr1.1:43968788-43968807 | MS.gene46915:intron | 30.0% | |
| GATGAGTGGAATAATATCTA+AGG | + | chr1.1:43968660-43968679 | None:intergenic | 30.0% | |
| GCAAGTCTTAAATCTTCAAA+TGG | + | chr1.1:43969173-43969192 | None:intergenic | 30.0% | |
| GTTACAATCTTGTTAGTACT+CGG | - | chr1.1:43967492-43967511 | MS.gene46915:CDS | 30.0% | |
| GTTGGAATTGTGAAAGTAAA+AGG | + | chr1.1:43967852-43967871 | None:intergenic | 30.0% | |
| GTTTGTTCGAATTTATCACT+TGG | + | chr1.1:43966407-43966426 | None:intergenic | 30.0% | |
| TAATTTACCACTATCCTTCA+AGG | - | chr1.1:43968498-43968517 | MS.gene46915:intron | 30.0% | |
| TAGATCTAATGACTTAAACC+AGG | + | chr1.1:43967292-43967311 | None:intergenic | 30.0% | |
| TATCCTTCAAGGAAATTTGT+TGG | - | chr1.1:43968509-43968528 | MS.gene46915:intron | 30.0% | |
| TCGTCAATATTAAGTCACTT+TGG | + | chr1.1:43967874-43967893 | None:intergenic | 30.0% | |
| TCTTTAACATCTTTCTCTCA+TGG | - | chr1.1:43968261-43968280 | MS.gene46915:intron | 30.0% | |
| TGAAATGTGTATATCACTAC+AGG | - | chr1.1:43969545-43969564 | MS.gene46915:intron | 30.0% | |
| TGAATGAAAACTTTGTGTCA+GGG | + | chr1.1:43968312-43968331 | None:intergenic | 30.0% | |
| TGTTAGCTGCATATAAGAAA+CGG | + | chr1.1:43969103-43969122 | None:intergenic | 30.0% | |
| TTATCATAGCCTATAGTCAA+TGG | - | chr1.1:43966256-43966275 | MS.gene46915:intron | 30.0% | |
| TTTGTGAGACTTGTATAACA+CGG | + | chr1.1:43969729-43969748 | None:intergenic | 30.0% | |
| ! | AAACTTGAATTTTGAACTGG+GGG | - | chr1.1:43965934-43965953 | MS.gene46915:CDS | 30.0% |
| ! | ATCCTTCAAGGAAATTTGTT+GGG | - | chr1.1:43968510-43968529 | MS.gene46915:intron | 30.0% |
| ! | CAAATGAGAGTGTGAATATA+AGG | - | chr1.1:43967162-43967181 | MS.gene46915:intron | 30.0% |
| ! | CAATATTAAGTCACTTTGGT+TGG | + | chr1.1:43967870-43967889 | None:intergenic | 30.0% |
| ! | CCAAAACTTGAATTTTGAAC+TGG | - | chr1.1:43965931-43965950 | MS.gene46915:CDS | 30.0% |
| ! | GGGGACTAAAATGATATTTT+TGG | - | chr1.1:43965955-43965974 | MS.gene46915:CDS | 30.0% |
| !! | AACCCAAGTGATTTTAGAAA+TGG | + | chr1.1:43967427-43967446 | None:intergenic | 30.0% |
| !! | ATCATAAGCTTTAAAAGACG+AGG | + | chr1.1:43969705-43969724 | None:intergenic | 30.0% |
| !! | CCAGTTCAAAATTCAAGTTT+TGG | + | chr1.1:43965934-43965953 | None:intergenic | 30.0% |
| AGTGGAATAATATCTAAGGG+AGG | + | chr1.1:43968656-43968675 | None:intergenic | 35.0% | |
| ATACAACATCTTGTTGCCAA+TGG | + | chr1.1:43966525-43966544 | None:intergenic | 35.0% | |
| ATAGTGTGTGTCATCTTGTA+TGG | + | chr1.1:43966703-43966722 | None:intergenic | 35.0% | |
| ATCAAAATTGTGGTGGTTCA+TGG | + | chr1.1:43969461-43969480 | None:intergenic | 35.0% | |
| ATCCCAACAAATTTCCTTGA+AGG | + | chr1.1:43968515-43968534 | None:intergenic | 35.0% | |
| ATGTGATCGACAATGTGAAT+TGG | - | chr1.1:43967315-43967334 | MS.gene46915:intron | 35.0% | |
| CAAAGCCCTGAATGATATAT+AGG | + | chr1.1:43965819-43965838 | None:intergenic | 35.0% | |
| CAAATTTCCTTGAAGGATAG+TGG | + | chr1.1:43968508-43968527 | None:intergenic | 35.0% | |
| CAACTACAAAGTAAGGTCTT+AGG | - | chr1.1:43968795-43968814 | MS.gene46915:intron | 35.0% | |
| CCGTTATTGTGGAATTCAAT+TGG | - | chr1.1:43967608-43967627 | MS.gene46915:intron | 35.0% | |
| CTAAGACCTTACTTTGTAGT+TGG | + | chr1.1:43968797-43968816 | None:intergenic | 35.0% | |
| GAAATTCGAGCAATTAGCAT+TGG | + | chr1.1:43966199-43966218 | None:intergenic | 35.0% | |
| GACTATAGGCTATGATAACA+AGG | + | chr1.1:43966254-43966273 | None:intergenic | 35.0% | |
| GTAAGTGAGAAAATGATGAG+CGG | + | chr1.1:43966341-43966360 | None:intergenic | 35.0% | |
| GTGGAATAATATCTAAGGGA+GGG | + | chr1.1:43968655-43968674 | None:intergenic | 35.0% | |
| TAAGTGAGAAAATGATGAGC+GGG | + | chr1.1:43966340-43966359 | None:intergenic | 35.0% | |
| TAGTGTGTGTCAACTTGTAT+AGG | + | chr1.1:43965581-43965600 | None:intergenic | 35.0% | |
| TAGTGTGTGTCATCTTGTAT+GGG | + | chr1.1:43966702-43966721 | None:intergenic | 35.0% | |
| TGTGATCGACAATGTGAATT+GGG | - | chr1.1:43967316-43967335 | MS.gene46915:intron | 35.0% | |
| TGTGTCAACTTGTATAGGAT+TGG | + | chr1.1:43965576-43965595 | None:intergenic | 35.0% | |
| ! | AACTTGAATTTTGAACTGGG+GGG | - | chr1.1:43965935-43965954 | MS.gene46915:CDS | 35.0% |
| !! | AGATTTTCTGGTGAAAGAGT+AGG | + | chr1.1:43968085-43968104 | None:intergenic | 35.0% |
| !! | CTCAAACTACACATTGACTT+GGG | - | chr1.1:43968577-43968596 | MS.gene46915:CDS | 35.0% |
| !! | TAACTAGCTTTGGATAGCTA+TGG | - | chr1.1:43967042-43967061 | MS.gene46915:CDS | 35.0% |
| !! | TTTGTCAGATGATGATGGTT+TGG | - | chr1.1:43969593-43969612 | MS.gene46915:intron | 35.0% |
| !!! | AAGAGCATTTTCTCGTAGAT+CGG | + | chr1.1:43965464-43965483 | None:intergenic | 35.0% |
| ACTTAAACCAGGTGACTACA+TGG | + | chr1.1:43967281-43967300 | None:intergenic | 40.0% | |
| AGATGTATGGGTACAAACCT+TGG | + | chr1.1:43965497-43965516 | None:intergenic | 40.0% | |
| ATGAAAACTTTGTGTCAGGG+TGG | + | chr1.1:43968309-43968328 | None:intergenic | 40.0% | |
| ATTTCATCCATGTAGTCACC+TGG | - | chr1.1:43967271-43967290 | MS.gene46915:intron | 40.0% | |
| CCAACTGCAAAAAAACGATC+TGG | + | chr1.1:43969636-43969655 | None:intergenic | 40.0% | |
| CGGTTAGAAACCAAACAAAC+AGG | - | chr1.1:43968554-43968573 | MS.gene46915:CDS | 40.0% | |
| GAATAATATCTAAGGGAGGG+AGG | + | chr1.1:43968652-43968671 | None:intergenic | 40.0% | |
| GTACAACATCTTGTTGCCAA+TGG | + | chr1.1:43965410-43965429 | None:intergenic | 40.0% | |
| GTAGTTTGAGCCTGTTTGTT+TGG | + | chr1.1:43968567-43968586 | None:intergenic | 40.0% | |
| GTTAAGACTAAGGAAGCGAT+AGG | - | chr1.1:43969350-43969369 | MS.gene46915:intron | 40.0% | |
| TCGCAACAATACGTGAAACT+GGG | - | chr1.1:43965906-43965925 | MS.gene46915:CDS | 40.0% | |
| TGAAAACTTTGTGTCAGGGT+GGG | + | chr1.1:43968308-43968327 | None:intergenic | 40.0% | |
| TGCCAATTTCCATATTGCGT+AGG | + | chr1.1:43969409-43969428 | None:intergenic | 40.0% | |
| TGCCTACGCAATATGGAAAT+TGG | - | chr1.1:43969404-43969423 | MS.gene46915:intron | 40.0% | |
| TGCTCTTCATTTGCTCTCTA+AGG | - | chr1.1:43966592-43966611 | MS.gene46915:intron | 40.0% | |
| TGTGTCATCTTGTATGGGAT+TGG | + | chr1.1:43966697-43966716 | None:intergenic | 40.0% | |
| TTCACTTCATGGTAAGTGCA+GGG | + | chr1.1:43968026-43968045 | None:intergenic | 40.0% | |
| TTTCACTTCATGGTAAGTGC+AGG | + | chr1.1:43968027-43968046 | None:intergenic | 40.0% | |
| ! | ACTTGAATTTTGAACTGGGG+GGG | - | chr1.1:43965936-43965955 | MS.gene46915:CDS | 40.0% |
| ! | GATTTAAGACTTGCGAGTCT+TGG | - | chr1.1:43969179-43969198 | MS.gene46915:intron | 40.0% |
| ! | GCTCAAACTACACATTGACT+TGG | - | chr1.1:43968576-43968595 | MS.gene46915:CDS | 40.0% |
| ! | TGGGACTATCCATTGACTAT+AGG | + | chr1.1:43966268-43966287 | None:intergenic | 40.0% |
| ! | TGTGCAGGAGTAAGATTTTC+TGG | + | chr1.1:43968097-43968116 | None:intergenic | 40.0% |
| !! | AGAGCATTTTCTCGTAGATC+GGG | + | chr1.1:43965463-43965482 | None:intergenic | 40.0% |
| !! | AGCTTTAAAAGACGAGGTGA+AGG | + | chr1.1:43969699-43969718 | None:intergenic | 40.0% |
| !! | CATATTCGAGTTGATTGTGC+AGG | + | chr1.1:43968112-43968131 | None:intergenic | 40.0% |
| !!! | CATGGTTTTGTTAAAGTGCG+TGG | - | chr1.1:43968279-43968298 | MS.gene46915:intron | 40.0% |
| !!! | CCAGATCGTTTTTTTGCAGT+TGG | - | chr1.1:43969633-43969652 | MS.gene46915:CDS | 40.0% |
| AAGAACTCGCACCGTTATTG+TGG | - | chr1.1:43967597-43967616 | MS.gene46915:intron | 45.0% | |
| AGTCATTGCTGCCATGGTAA+AGG | - | chr1.1:43969202-43969221 | MS.gene46915:intron | 45.0% | |
| AGTCTCGTAACATGGTGCAT+CGG | + | chr1.1:43966762-43966781 | None:intergenic | 45.0% | |
| ATCTCACCTGAAGTAGAGCA+AGG | + | chr1.1:43968141-43968160 | None:intergenic | 45.0% | |
| CAATACCCTTGCTCTACTTC+AGG | - | chr1.1:43968132-43968151 | MS.gene46915:intron | 45.0% | |
| CGCAACAATACGTGAAACTG+GGG | - | chr1.1:43965907-43965926 | MS.gene46915:CDS | 45.0% | |
| GCATTACTTCAGTTGCGAGA+AGG | + | chr1.1:43969379-43969398 | None:intergenic | 45.0% | |
| GTCGCAACAATACGTGAAAC+TGG | - | chr1.1:43965905-43965924 | MS.gene46915:CDS | 45.0% | |
| TAGTCAATGGATAGTCCCAC+TGG | - | chr1.1:43966269-43966288 | MS.gene46915:intron | 45.0% | |
| TCCATATTGCGTAGGCACAA+CGG | + | chr1.1:43969401-43969420 | None:intergenic | 45.0% | |
| TCTCACCTGAAGTAGAGCAA+GGG | + | chr1.1:43968140-43968159 | None:intergenic | 45.0% | |
| TCTTCAAGGAGGGTGATTGA+GGG | + | chr1.1:43965351-43965370 | None:intergenic | 45.0% | |
| TGCTCTTCATTTGCTCTCCA+AGG | - | chr1.1:43965477-43965496 | MS.gene46915:CDS | 45.0% | |
| TTCTTCAAGGAGGGTGATTG+AGG | + | chr1.1:43965352-43965371 | None:intergenic | 45.0% | |
| ! | GAGCATTTTCTCGTAGATCG+GGG | + | chr1.1:43965462-43965481 | None:intergenic | 45.0% |
| ! | TTTTGCAGTTGGTCGAGCTT+TGG | - | chr1.1:43969644-43969663 | MS.gene46915:CDS | 45.0% |
| !! | TAAGATGGTGGAGTTGGGTT+CGG | + | chr1.1:43969771-43969790 | None:intergenic | 45.0% |
| !! | AAAATTATAATATTTATGTA+TGG | + | chr1.1:43968202-43968221 | None:intergenic | 5.0% |
| !!! | TTTTCATAATTATAATTTTA+TGG | + | chr1.1:43966057-43966076 | None:intergenic | 5.0% |
| AAATGATGAGCGGGCAAGTG+TGG | + | chr1.1:43966331-43966350 | None:intergenic | 50.0% | |
| AGTCTCGTAACATGGGGCAT+CGG | + | chr1.1:43965641-43965660 | None:intergenic | 50.0% | |
| CATCTTGTTGCCAATGGTGC+TGG | + | chr1.1:43965404-43965423 | None:intergenic | 50.0% | |
| CTGGCATGCAAAACACGTGT+TGG | - | chr1.1:43966288-43966307 | MS.gene46915:intron | 50.0% | |
| CTTCAAGGAGGGTGATTGAG+GGG | + | chr1.1:43965350-43965369 | None:intergenic | 50.0% | |
| TCTTGGAGTCATTGCTGCCA+TGG | - | chr1.1:43969196-43969215 | MS.gene46915:intron | 50.0% | |
| TTCAAGGAGGGTGATTGAGG+GGG | + | chr1.1:43965349-43965368 | None:intergenic | 50.0% | |
| ! | ACACGTGTTTTGCATGCCAG+TGG | + | chr1.1:43966288-43966307 | None:intergenic | 50.0% |
| ! | CACGTGTTTTGCATGCCAGT+GGG | + | chr1.1:43966287-43966306 | None:intergenic | 50.0% |
| !! | ATGGGGCTAGTCTCGTAACA+TGG | + | chr1.1:43965649-43965668 | None:intergenic | 50.0% |
| !! | TCGAGCTTTGGACAGGATGT+TGG | - | chr1.1:43969656-43969675 | MS.gene46915:CDS | 50.0% |
| !! | TGGGGCTAGTCTCGTAACAT+GGG | + | chr1.1:43965648-43965667 | None:intergenic | 50.0% |
| ACATCTGCCTCCAGCACCAT+TGG | - | chr1.1:43965391-43965410 | MS.gene46915:CDS | 55.0% | |
| AGCGGGCAAGTGTGGCAATA+TGG | + | chr1.1:43966323-43966342 | None:intergenic | 55.0% | |
| GCCGTTGTGCCTACGCAATA+TGG | - | chr1.1:43969397-43969416 | MS.gene46915:intron | 55.0% | |
| GGGGGGAAATTCGCCATTGA+TGG | + | chr1.1:43966446-43966465 | None:intergenic | 55.0% | |
| GTGCTGGAGGCAGATGTAAC+AGG | + | chr1.1:43965388-43965407 | None:intergenic | 55.0% | |
| TCAAGGAGGGTGATTGAGGG+GGG | + | chr1.1:43965348-43965367 | None:intergenic | 55.0% | |
| ! | CTTGTTGCCAATGGTGCTGG+AGG | + | chr1.1:43965401-43965420 | None:intergenic | 55.0% |
| !! | CAGTTGGTCGAGCTTTGGAC+AGG | - | chr1.1:43969649-43969668 | MS.gene46915:CDS | 55.0% |
| !! | GGGGCTAGTCTCGTAACATG+GGG | + | chr1.1:43965647-43965666 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 43965334 | 43969791 | 43965334 | ID=MS.gene46915 |
| chr1.1 | mRNA | 43965334 | 43969791 | 43965334 | ID=MS.gene46915.t1;Parent=MS.gene46915 |
| chr1.1 | exon | 43969627 | 43969791 | 43969627 | ID=MS.gene46915.t1.exon1;Parent=MS.gene46915.t1 |
| chr1.1 | CDS | 43969627 | 43969791 | 43969627 | ID=cds.MS.gene46915.t1;Parent=MS.gene46915.t1 |
| chr1.1 | exon | 43968512 | 43968640 | 43968512 | ID=MS.gene46915.t1.exon2;Parent=MS.gene46915.t1 |
| chr1.1 | CDS | 43968512 | 43968640 | 43968512 | ID=cds.MS.gene46915.t1;Parent=MS.gene46915.t1 |
| chr1.1 | exon | 43967473 | 43967544 | 43967473 | ID=MS.gene46915.t1.exon3;Parent=MS.gene46915.t1 |
| chr1.1 | CDS | 43967473 | 43967544 | 43967473 | ID=cds.MS.gene46915.t1;Parent=MS.gene46915.t1 |
| chr1.1 | exon | 43966972 | 43967061 | 43966972 | ID=MS.gene46915.t1.exon4;Parent=MS.gene46915.t1 |
| chr1.1 | CDS | 43966972 | 43967061 | 43966972 | ID=cds.MS.gene46915.t1;Parent=MS.gene46915.t1 |
| chr1.1 | exon | 43966788 | 43966830 | 43966788 | ID=MS.gene46915.t1.exon5;Parent=MS.gene46915.t1 |
| chr1.1 | CDS | 43966788 | 43966830 | 43966788 | ID=cds.MS.gene46915.t1;Parent=MS.gene46915.t1 |
| chr1.1 | exon | 43965902 | 43966008 | 43965902 | ID=MS.gene46915.t1.exon6;Parent=MS.gene46915.t1 |
| chr1.1 | CDS | 43965902 | 43966008 | 43965902 | ID=cds.MS.gene46915.t1;Parent=MS.gene46915.t1 |
| chr1.1 | exon | 43965680 | 43965775 | 43965680 | ID=MS.gene46915.t1.exon7;Parent=MS.gene46915.t1 |
| chr1.1 | CDS | 43965680 | 43965775 | 43965680 | ID=cds.MS.gene46915.t1;Parent=MS.gene46915.t1 |
| chr1.1 | exon | 43965334 | 43965558 | 43965334 | ID=MS.gene46915.t1.exon8;Parent=MS.gene46915.t1 |
| chr1.1 | CDS | 43965334 | 43965558 | 43965334 | ID=cds.MS.gene46915.t1;Parent=MS.gene46915.t1 |
| Gene Sequence |
| Protein sequence |
