Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46946.t1 | KEH33664.1 | 97 | 134 | 3 | 1 | 1 | 134 | 1 | 133 | 1.00E-66 | 262.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46946.t1 | Q700D9 | 60.6 | 71 | 28 | 0 | 2 | 72 | 6 | 76 | 1.1e-16 | 87.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46946.t1 | A0A072UUY9 | 97.0 | 134 | 3 | 1 | 1 | 134 | 1 | 133 | 7.5e-67 | 262.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene46946.t1 | TF | GARP-G2-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46946.t1 | MTR_3g450310 | 97.015 | 134 | 3 | 1 | 1 | 134 | 1 | 133 | 8.99e-94 | 270 |
| MS.gene46946.t1 | MTR_2g023580 | 52.688 | 93 | 43 | 1 | 11 | 102 | 47 | 139 | 5.20e-26 | 98.6 |
| MS.gene46946.t1 | MTR_0223s0040 | 63.235 | 68 | 25 | 0 | 11 | 78 | 10 | 77 | 8.29e-26 | 99.4 |
| MS.gene46946.t1 | MTR_8g086410 | 55.952 | 84 | 32 | 2 | 4 | 83 | 96 | 178 | 1.44e-25 | 100 |
| MS.gene46946.t1 | MTR_8g086410 | 55.952 | 84 | 32 | 2 | 4 | 83 | 94 | 176 | 1.44e-25 | 100 |
| MS.gene46946.t1 | MTR_1g112370 | 60.294 | 68 | 27 | 0 | 10 | 77 | 13 | 80 | 6.94e-25 | 97.8 |
| MS.gene46946.t1 | MTR_2g084230 | 60.000 | 70 | 28 | 0 | 6 | 75 | 84 | 153 | 3.29e-24 | 95.5 |
| MS.gene46946.t1 | MTR_2g016220 | 58.108 | 74 | 31 | 0 | 2 | 75 | 72 | 145 | 4.79e-24 | 95.9 |
| MS.gene46946.t1 | MTR_2g016220 | 58.108 | 74 | 31 | 0 | 2 | 75 | 72 | 145 | 4.93e-24 | 95.9 |
| MS.gene46946.t1 | MTR_2g084230 | 62.687 | 67 | 25 | 0 | 9 | 75 | 87 | 153 | 5.30e-24 | 95.9 |
| MS.gene46946.t1 | MTR_7g069660 | 54.667 | 75 | 34 | 0 | 1 | 75 | 53 | 127 | 2.45e-23 | 93.6 |
| MS.gene46946.t1 | MTR_8g086410 | 51.648 | 91 | 32 | 3 | 4 | 83 | 96 | 185 | 4.85e-23 | 93.6 |
| MS.gene46946.t1 | MTR_2g016220 | 55.128 | 78 | 31 | 1 | 2 | 75 | 72 | 149 | 6.00e-22 | 90.1 |
| MS.gene46946.t1 | MTR_1g080330 | 54.167 | 72 | 32 | 1 | 4 | 75 | 161 | 231 | 1.13e-20 | 85.5 |
| MS.gene46946.t1 | MTR_1g080330 | 54.167 | 72 | 32 | 1 | 4 | 75 | 161 | 231 | 1.63e-20 | 86.3 |
| MS.gene46946.t1 | MTR_7g115530 | 57.895 | 57 | 24 | 0 | 19 | 75 | 218 | 274 | 1.87e-19 | 82.8 |
| MS.gene46946.t1 | MTR_7g115530 | 57.895 | 57 | 24 | 0 | 19 | 75 | 218 | 274 | 3.24e-19 | 82.4 |
| MS.gene46946.t1 | MTR_7g115530 | 57.895 | 57 | 24 | 0 | 19 | 75 | 218 | 274 | 3.84e-19 | 82.8 |
| MS.gene46946.t1 | MTR_5g041350 | 46.739 | 92 | 45 | 2 | 19 | 110 | 15 | 102 | 4.05e-19 | 82.4 |
| MS.gene46946.t1 | MTR_7g115530 | 57.895 | 57 | 24 | 0 | 19 | 75 | 218 | 274 | 6.05e-19 | 81.6 |
| MS.gene46946.t1 | MTR_7g098250 | 56.140 | 57 | 25 | 0 | 19 | 75 | 262 | 318 | 8.84e-19 | 82.0 |
| MS.gene46946.t1 | MTR_1g021520 | 48.000 | 75 | 37 | 1 | 1 | 75 | 110 | 182 | 4.67e-18 | 79.0 |
| MS.gene46946.t1 | MTR_8g066310 | 58.621 | 58 | 24 | 0 | 18 | 75 | 172 | 229 | 5.86e-18 | 79.0 |
| MS.gene46946.t1 | MTR_6g071625 | 56.897 | 58 | 25 | 0 | 18 | 75 | 201 | 258 | 6.47e-18 | 79.0 |
| MS.gene46946.t1 | MTR_6g032990 | 49.333 | 75 | 30 | 2 | 19 | 85 | 42 | 116 | 9.72e-18 | 79.0 |
| MS.gene46946.t1 | MTR_7g115530 | 58.491 | 53 | 22 | 0 | 19 | 71 | 218 | 270 | 1.06e-17 | 77.8 |
| MS.gene46946.t1 | MTR_7g115530 | 60.784 | 51 | 20 | 0 | 19 | 69 | 218 | 268 | 1.36e-17 | 77.4 |
| MS.gene46946.t1 | MTR_5g029470 | 56.897 | 58 | 25 | 0 | 18 | 75 | 218 | 275 | 2.00e-17 | 77.8 |
| MS.gene46946.t1 | MTR_3g064840 | 56.897 | 58 | 25 | 0 | 18 | 75 | 273 | 330 | 2.20e-17 | 77.8 |
| MS.gene46946.t1 | MTR_5g027440 | 48.611 | 72 | 30 | 1 | 8 | 72 | 7 | 78 | 3.36e-17 | 76.3 |
| MS.gene46946.t1 | MTR_2g086450 | 47.436 | 78 | 37 | 2 | 4 | 78 | 31 | 107 | 3.87e-17 | 77.0 |
| MS.gene46946.t1 | MTR_7g093030 | 55.932 | 59 | 26 | 0 | 17 | 75 | 210 | 268 | 8.51e-17 | 75.5 |
| MS.gene46946.t1 | MTR_7g093030 | 55.932 | 59 | 26 | 0 | 17 | 75 | 210 | 268 | 1.16e-16 | 75.9 |
| MS.gene46946.t1 | MTR_6g444980 | 61.111 | 54 | 21 | 0 | 19 | 72 | 35 | 88 | 2.23e-16 | 74.7 |
| MS.gene46946.t1 | MTR_6g444980 | 61.111 | 54 | 21 | 0 | 19 | 72 | 35 | 88 | 2.34e-16 | 74.7 |
| MS.gene46946.t1 | MTR_2g027860 | 48.101 | 79 | 24 | 1 | 21 | 99 | 51 | 112 | 3.32e-16 | 73.9 |
| MS.gene46946.t1 | MTR_1g053830 | 52.542 | 59 | 28 | 0 | 17 | 75 | 16 | 74 | 4.73e-16 | 69.3 |
| MS.gene46946.t1 | MTR_1g090670 | 61.111 | 54 | 21 | 0 | 19 | 72 | 44 | 97 | 5.70e-16 | 73.2 |
| MS.gene46946.t1 | MTR_4g081710 | 45.205 | 73 | 38 | 1 | 19 | 91 | 17 | 87 | 8.98e-16 | 72.8 |
| MS.gene46946.t1 | MTR_7g088070 | 47.222 | 72 | 38 | 0 | 4 | 75 | 35 | 106 | 1.11e-15 | 72.0 |
| MS.gene46946.t1 | MTR_2g027800 | 51.429 | 70 | 33 | 1 | 19 | 87 | 39 | 108 | 1.13e-15 | 72.4 |
| MS.gene46946.t1 | MTR_7g088070 | 47.222 | 72 | 38 | 0 | 4 | 75 | 35 | 106 | 1.34e-15 | 72.0 |
| MS.gene46946.t1 | MTR_2g027800 | 59.259 | 54 | 22 | 0 | 19 | 72 | 39 | 92 | 1.93e-15 | 72.0 |
| MS.gene46946.t1 | MTR_1g053835 | 54.237 | 59 | 27 | 0 | 17 | 75 | 256 | 314 | 3.58e-15 | 71.6 |
| MS.gene46946.t1 | MTR_1g053800 | 59.259 | 54 | 22 | 0 | 21 | 74 | 179 | 232 | 1.90e-14 | 69.3 |
| MS.gene46946.t1 | MTR_7g068600 | 50.704 | 71 | 29 | 2 | 5 | 72 | 2 | 69 | 4.06e-14 | 67.4 |
| MS.gene46946.t1 | MTR_4g021790 | 51.613 | 62 | 29 | 1 | 11 | 72 | 160 | 220 | 3.11e-13 | 65.5 |
| MS.gene46946.t1 | MTR_4g021855 | 55.357 | 56 | 24 | 1 | 17 | 72 | 166 | 220 | 4.46e-13 | 65.1 |
| MS.gene46946.t1 | MTR_7g093010 | 53.704 | 54 | 25 | 0 | 21 | 74 | 215 | 268 | 2.66e-12 | 63.2 |
| MS.gene46946.t1 | MTR_4g064730 | 50.000 | 64 | 31 | 1 | 9 | 72 | 121 | 183 | 7.41e-12 | 62.0 |
| MS.gene46946.t1 | MTR_1g032570 | 55.357 | 56 | 24 | 1 | 17 | 72 | 129 | 183 | 7.94e-12 | 62.0 |
| MS.gene46946.t1 | MTR_1g032570 | 55.357 | 56 | 24 | 1 | 17 | 72 | 198 | 252 | 8.18e-12 | 62.0 |
| MS.gene46946.t1 | MTR_4g086835 | 50.000 | 56 | 28 | 0 | 17 | 72 | 272 | 327 | 8.30e-12 | 62.0 |
| MS.gene46946.t1 | MTR_4g121020 | 54.545 | 55 | 24 | 1 | 18 | 72 | 214 | 267 | 1.95e-11 | 60.8 |
| MS.gene46946.t1 | MTR_4g121020 | 54.545 | 55 | 24 | 1 | 18 | 72 | 214 | 267 | 1.97e-11 | 60.8 |
| MS.gene46946.t1 | MTR_2g450070 | 49.091 | 55 | 27 | 1 | 18 | 72 | 212 | 265 | 2.10e-11 | 60.8 |
| MS.gene46946.t1 | MTR_2g450070 | 49.091 | 55 | 27 | 1 | 18 | 72 | 212 | 265 | 2.17e-11 | 60.8 |
| MS.gene46946.t1 | MTR_4g121020 | 54.545 | 55 | 24 | 1 | 18 | 72 | 110 | 163 | 2.20e-11 | 60.8 |
| MS.gene46946.t1 | MTR_1g093080 | 45.714 | 70 | 37 | 1 | 3 | 72 | 196 | 264 | 3.33e-11 | 60.1 |
| MS.gene46946.t1 | MTR_4g131600 | 54.545 | 55 | 24 | 1 | 18 | 72 | 200 | 253 | 3.57e-11 | 60.1 |
| MS.gene46946.t1 | MTR_2g034960 | 53.571 | 56 | 25 | 1 | 17 | 72 | 209 | 263 | 4.30e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46946.t1 | AT2G02060 | 58.228 | 79 | 33 | 0 | 4 | 82 | 14 | 92 | 7.82e-25 | 96.3 |
| MS.gene46946.t1 | AT2G02060 | 58.228 | 79 | 33 | 0 | 4 | 82 | 14 | 92 | 7.82e-25 | 96.3 |
| MS.gene46946.t1 | AT2G40260 | 62.162 | 74 | 27 | 1 | 3 | 75 | 65 | 138 | 2.13e-24 | 97.4 |
| MS.gene46946.t1 | AT4G04605 | 61.538 | 65 | 25 | 0 | 11 | 75 | 6 | 70 | 5.36e-24 | 93.2 |
| MS.gene46946.t1 | AT1G14600 | 58.108 | 74 | 31 | 0 | 2 | 75 | 6 | 79 | 1.20e-23 | 93.2 |
| MS.gene46946.t1 | AT2G42660 | 61.538 | 65 | 25 | 0 | 11 | 75 | 42 | 106 | 2.44e-23 | 92.0 |
| MS.gene46946.t1 | AT2G38300 | 47.000 | 100 | 43 | 2 | 7 | 96 | 42 | 141 | 4.85e-23 | 92.8 |
| MS.gene46946.t1 | AT4G04555 | 58.209 | 67 | 28 | 0 | 11 | 77 | 6 | 72 | 1.11e-20 | 81.6 |
| MS.gene46946.t1 | AT4G04580 | 55.385 | 65 | 29 | 0 | 11 | 75 | 6 | 70 | 1.37e-20 | 82.8 |
| MS.gene46946.t1 | AT4G28610 | 58.182 | 55 | 23 | 0 | 21 | 75 | 227 | 281 | 3.56e-18 | 80.1 |
| MS.gene46946.t1 | AT5G18240 | 40.336 | 119 | 59 | 4 | 1 | 108 | 28 | 145 | 3.72e-18 | 80.1 |
| MS.gene46946.t1 | AT5G18240 | 40.336 | 119 | 59 | 4 | 1 | 108 | 28 | 145 | 3.73e-18 | 80.1 |
| MS.gene46946.t1 | AT5G18240 | 40.336 | 119 | 59 | 4 | 1 | 108 | 28 | 145 | 3.73e-18 | 80.1 |
| MS.gene46946.t1 | AT5G18240 | 40.336 | 119 | 59 | 4 | 1 | 108 | 28 | 145 | 4.02e-18 | 80.1 |
| MS.gene46946.t1 | AT5G18240 | 40.336 | 119 | 59 | 4 | 1 | 108 | 28 | 145 | 4.02e-18 | 80.1 |
| MS.gene46946.t1 | AT5G42630 | 55.172 | 58 | 26 | 0 | 18 | 75 | 104 | 161 | 4.27e-18 | 77.8 |
| MS.gene46946.t1 | AT5G42630 | 55.172 | 58 | 26 | 0 | 18 | 75 | 104 | 161 | 7.18e-18 | 78.2 |
| MS.gene46946.t1 | AT5G45580 | 46.429 | 84 | 41 | 1 | 19 | 98 | 7 | 90 | 8.22e-18 | 77.8 |
| MS.gene46946.t1 | AT5G45580 | 46.429 | 84 | 41 | 1 | 19 | 98 | 23 | 106 | 1.01e-17 | 77.8 |
| MS.gene46946.t1 | AT1G32240 | 56.897 | 58 | 25 | 0 | 18 | 75 | 212 | 269 | 1.04e-17 | 78.6 |
| MS.gene46946.t1 | AT1G32240 | 56.897 | 58 | 25 | 0 | 18 | 75 | 212 | 269 | 1.08e-17 | 78.6 |
| MS.gene46946.t1 | AT2G20400 | 41.667 | 108 | 59 | 2 | 21 | 126 | 233 | 338 | 1.38e-17 | 78.6 |
| MS.gene46946.t1 | AT5G16560 | 56.897 | 58 | 25 | 0 | 18 | 75 | 218 | 275 | 1.59e-17 | 78.2 |
| MS.gene46946.t1 | AT2G01060 | 53.333 | 75 | 31 | 2 | 1 | 75 | 1 | 71 | 1.68e-17 | 77.0 |
| MS.gene46946.t1 | AT3G04030 | 45.679 | 81 | 40 | 2 | 1 | 78 | 28 | 107 | 2.86e-17 | 77.4 |
| MS.gene46946.t1 | AT4G13640 | 61.111 | 54 | 21 | 0 | 19 | 72 | 37 | 90 | 3.08e-17 | 76.6 |
| MS.gene46946.t1 | AT4G13640 | 61.111 | 54 | 21 | 0 | 19 | 72 | 37 | 90 | 3.15e-17 | 76.6 |
| MS.gene46946.t1 | AT3G04030 | 45.679 | 81 | 40 | 2 | 1 | 78 | 28 | 107 | 3.50e-17 | 77.4 |
| MS.gene46946.t1 | AT4G17695 | 50.847 | 59 | 29 | 0 | 18 | 76 | 163 | 221 | 3.91e-17 | 76.6 |
| MS.gene46946.t1 | AT3G24120 | 61.111 | 54 | 21 | 0 | 19 | 72 | 41 | 94 | 4.88e-17 | 76.3 |
| MS.gene46946.t1 | AT3G24120 | 61.111 | 54 | 21 | 0 | 19 | 72 | 41 | 94 | 5.19e-17 | 75.9 |
| MS.gene46946.t1 | AT2G20400 | 58.182 | 55 | 23 | 0 | 21 | 75 | 233 | 287 | 9.50e-17 | 75.9 |
| MS.gene46946.t1 | AT1G79430 | 61.111 | 54 | 21 | 0 | 19 | 72 | 34 | 87 | 1.81e-16 | 75.1 |
| MS.gene46946.t1 | AT3G12730 | 59.259 | 54 | 22 | 0 | 19 | 72 | 23 | 76 | 2.30e-16 | 73.6 |
| MS.gene46946.t1 | AT5G29000 | 48.571 | 70 | 35 | 1 | 6 | 75 | 219 | 287 | 6.56e-16 | 73.2 |
| MS.gene46946.t1 | AT5G29000 | 48.571 | 70 | 35 | 1 | 6 | 75 | 176 | 244 | 7.29e-16 | 73.6 |
| MS.gene46946.t1 | AT5G29000 | 48.571 | 70 | 35 | 1 | 6 | 75 | 176 | 244 | 7.29e-16 | 73.6 |
| MS.gene46946.t1 | AT3G04450 | 47.143 | 70 | 36 | 1 | 17 | 86 | 237 | 305 | 8.02e-16 | 73.6 |
| MS.gene46946.t1 | AT5G29000 | 48.571 | 70 | 35 | 1 | 6 | 75 | 219 | 287 | 8.39e-16 | 73.6 |
| MS.gene46946.t1 | AT3G04450 | 47.143 | 70 | 36 | 1 | 17 | 86 | 197 | 265 | 8.75e-16 | 73.2 |
| MS.gene46946.t1 | AT3G04450 | 47.143 | 70 | 36 | 1 | 17 | 86 | 197 | 265 | 8.75e-16 | 73.2 |
| MS.gene46946.t1 | AT3G04450 | 50.847 | 59 | 28 | 1 | 17 | 75 | 237 | 294 | 1.87e-15 | 72.0 |
| MS.gene46946.t1 | AT2G06020 | 44.928 | 69 | 34 | 1 | 14 | 78 | 81 | 149 | 2.27e-15 | 71.6 |
| MS.gene46946.t1 | AT5G06800 | 58.182 | 55 | 23 | 0 | 21 | 75 | 194 | 248 | 3.88e-15 | 70.9 |
| MS.gene46946.t1 | AT5G06800 | 58.182 | 55 | 23 | 0 | 21 | 75 | 194 | 248 | 6.27e-15 | 70.9 |
| MS.gene46946.t1 | AT5G06800 | 58.182 | 55 | 23 | 0 | 21 | 75 | 194 | 248 | 6.35e-15 | 70.9 |
| MS.gene46946.t1 | AT3G13040 | 56.364 | 55 | 24 | 0 | 21 | 75 | 243 | 297 | 8.23e-15 | 70.9 |
| MS.gene46946.t1 | AT3G13040 | 56.364 | 55 | 24 | 0 | 21 | 75 | 243 | 297 | 8.23e-15 | 70.9 |
| MS.gene46946.t1 | AT3G13040 | 56.364 | 55 | 24 | 0 | 21 | 75 | 243 | 297 | 8.23e-15 | 70.9 |
| MS.gene46946.t1 | AT3G04030 | 43.210 | 81 | 41 | 3 | 1 | 78 | 28 | 106 | 2.43e-14 | 69.3 |
| MS.gene46946.t1 | AT1G69580 | 42.667 | 75 | 43 | 0 | 19 | 93 | 34 | 108 | 3.47e-14 | 68.6 |
| MS.gene46946.t1 | AT1G69580 | 42.667 | 75 | 43 | 0 | 19 | 93 | 34 | 108 | 3.52e-14 | 68.6 |
| MS.gene46946.t1 | AT5G44190 | 55.357 | 56 | 24 | 1 | 18 | 73 | 146 | 200 | 6.93e-12 | 62.4 |
| MS.gene46946.t1 | AT5G44190 | 55.357 | 56 | 24 | 1 | 18 | 73 | 146 | 200 | 8.31e-12 | 62.0 |
| MS.gene46946.t1 | AT5G58080 | 47.059 | 68 | 30 | 2 | 5 | 72 | 185 | 246 | 1.32e-11 | 61.6 |
| MS.gene46946.t1 | AT5G59570 | 53.571 | 56 | 25 | 1 | 17 | 72 | 139 | 193 | 3.05e-11 | 60.1 |
| MS.gene46946.t1 | AT5G59570 | 53.571 | 56 | 25 | 1 | 17 | 72 | 139 | 193 | 3.05e-11 | 60.1 |
| MS.gene46946.t1 | AT3G62670 | 50.000 | 60 | 26 | 1 | 17 | 72 | 209 | 268 | 3.10e-11 | 60.5 |
| MS.gene46946.t1 | AT1G25550 | 42.623 | 61 | 35 | 0 | 12 | 72 | 202 | 262 | 3.73e-11 | 60.1 |
| MS.gene46946.t1 | AT2G03500 | 47.273 | 55 | 29 | 0 | 18 | 72 | 232 | 286 | 5.24e-11 | 59.7 |
Find 23 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCGAAGTTCCGTTATTT+TGG | 0.159917 | 3.2:-37934186 | None:intergenic |
| TTACCTTTGGGGTGAACAAC+TGG | 0.338441 | 3.2:-37932627 | None:intergenic |
| ATCATATTCAAAATGTGTTT+AGG | 0.358434 | 3.2:-37929997 | None:intergenic |
| ACAAAGTATTGATGAAGTTC+CGG | 0.415452 | 3.2:-37929657 | None:intergenic |
| GTTCAAACTGTTGAAAGTCT+TGG | 0.422209 | 3.2:+37929678 | MS.gene46946:CDS |
| AACTATTCTTGCACCAACAC+TGG | 0.497047 | 3.2:+37932565 | MS.gene46946:CDS |
| TCATTATTATGATCTAAATC+AGG | 0.507909 | 3.2:+37934148 | MS.gene46946:CDS |
| AACAATAATTCTAAGAGAAG+TGG | 0.514149 | 3.2:+37929588 | MS.gene46946:CDS |
| TTGAATATGATGCAAGTGAA+GGG | 0.529830 | 3.2:+37930009 | MS.gene46946:CDS |
| CAAAACAGCCACGCCTTCGA+TGG | 0.531209 | 3.2:+37929631 | MS.gene46946:CDS |
| TTTGAATATGATGCAAGTGA+AGG | 0.533245 | 3.2:+37930008 | MS.gene46946:CDS |
| GGTGAACAACTGGAGCAGAT+TGG | 0.536299 | 3.2:-37932617 | None:intergenic |
| TCCGGTGTCCATCGAAGGCG+TGG | 0.541150 | 3.2:-37929639 | None:intergenic |
| CCATATTAAAAGTCATCTCC+AGG | 0.551481 | 3.2:+37930044 | MS.gene46946:CDS |
| TTTGATAAAATTTACCTTTG+GGG | 0.582723 | 3.2:-37932638 | None:intergenic |
| GAAGTTCCGGTGTCCATCGA+AGG | 0.585063 | 3.2:-37929644 | None:intergenic |
| CAAACTGTTGAAAGTCTTGG+TGG | 0.585108 | 3.2:+37929681 | MS.gene46946:CDS |
| GCTCCAGTTGTTCACCCCAA+AGG | 0.588268 | 3.2:+37932624 | MS.gene46946:CDS |
| ACCAACACTGGAAGAAAACA+AGG | 0.606646 | 3.2:+37932577 | MS.gene46946:CDS |
| GCCACGCCTTCGATGGACAC+CGG | 0.606915 | 3.2:+37929638 | MS.gene46946:CDS |
| TTAGATGTACAGGAACGTGA+AGG | 0.615592 | 3.2:+37932538 | MS.gene46946:intron |
| TAGATGTACAGGAACGTGAA+GGG | 0.615844 | 3.2:+37932539 | MS.gene46946:intron |
| TGAATATGATGCAAGTGAAG+GGG | 0.650743 | 3.2:+37930010 | MS.gene46946:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTCTATTAAATTAGTA+AGG | + | chr3.2:37933503-37933522 | MS.gene46946:intron | 10.0% |
| !! | ATATTAAATACTATATCAAA+TGG | - | chr3.2:37930925-37930944 | None:intergenic | 10.0% |
| !! | ATATTCTATTAAATTAGTAA+GGG | + | chr3.2:37933504-37933523 | MS.gene46946:intron | 10.0% |
| !! | TTATTATATGATATCAATAT+AGG | - | chr3.2:37931376-37931395 | None:intergenic | 10.0% |
| !!! | AATTGTCTTTTTTTTTTTTT+TGG | - | chr3.2:37933641-37933660 | None:intergenic | 10.0% |
| !!! | TATTATATACATTTTTTTAG+AGG | - | chr3.2:37932394-37932413 | None:intergenic | 10.0% |
| !!! | TATTTTTATTTCATTTTAGA+GGG | + | chr3.2:37933851-37933870 | MS.gene46946:intron | 10.0% |
| !!! | TTATTTTTATTTCATTTTAG+AGG | + | chr3.2:37933850-37933869 | MS.gene46946:intron | 10.0% |
| !!! | TTTTTATTCAAAAAATCAAA+TGG | + | chr3.2:37932668-37932687 | MS.gene46946:intron | 10.0% |
| !! | AAAAAAAATAGTGATATGAT+AGG | + | chr3.2:37933155-37933174 | MS.gene46946:intron | 15.0% |
| !! | ATTATGTATAAGTATTAAGA+CGG | + | chr3.2:37929909-37929928 | MS.gene46946:intron | 15.0% |
| !! | ATTTGATAAAATTTACCTTT+GGG | - | chr3.2:37932642-37932661 | None:intergenic | 15.0% |
| !! | GTAGTAAAATTATTTAGATT+AGG | - | chr3.2:37933736-37933755 | None:intergenic | 15.0% |
| !! | TTATATATATGCTTGAAAAT+CGG | + | chr3.2:37931813-37931832 | MS.gene46946:intron | 15.0% |
| !! | TTGTATATATTCTAATAATG+AGG | - | chr3.2:37930127-37930146 | None:intergenic | 15.0% |
| !!! | AAATGCATTTTAAAATAATC+TGG | - | chr3.2:37931543-37931562 | None:intergenic | 15.0% |
| !!! | ACCAATTTTTACTTATATTT+TGG | + | chr3.2:37931971-37931990 | MS.gene46946:intron | 15.0% |
| !!! | ATCTAAAATTATTTTAAAGG+TGG | - | chr3.2:37933531-37933550 | None:intergenic | 15.0% |
| !!! | CCAATTTTTACTTATATTTT+GGG | + | chr3.2:37931972-37931991 | MS.gene46946:intron | 15.0% |
| !!! | GAGATCTAAAATTATTTTAA+AGG | - | chr3.2:37933534-37933553 | None:intergenic | 15.0% |
| !!! | GTACAAAATTGAATTTTATT+AGG | + | chr3.2:37933454-37933473 | MS.gene46946:intron | 15.0% |
| !!! | TTTTCATAATATGTGAATAT+TGG | + | chr3.2:37930280-37930299 | MS.gene46946:intron | 15.0% |
| !!! | TTTTCATTCACTTTTTTATT+AGG | + | chr3.2:37932115-37932134 | MS.gene46946:intron | 15.0% |
| !! | AAACAAATACATGATTACAT+TGG | + | chr3.2:37931514-37931533 | MS.gene46946:intron | 20.0% |
| !! | AAGGGATAATTGAAAAATTT+AGG | - | chr3.2:37933830-37933849 | None:intergenic | 20.0% |
| !! | AAGTATATGTTACCAAAAAA+AGG | + | chr3.2:37932031-37932050 | MS.gene46946:intron | 20.0% |
| !! | AATGAGGATTAAATTAATTG+AGG | - | chr3.2:37930111-37930130 | None:intergenic | 20.0% |
| !! | AATTGAAAAATTTAGGTATG+TGG | - | chr3.2:37933823-37933842 | None:intergenic | 20.0% |
| !! | ACTATCATTGTTGAATAAAT+AGG | + | chr3.2:37933389-37933408 | MS.gene46946:intron | 20.0% |
| !! | ATCATATTCAAAATGTGTTT+AGG | - | chr3.2:37930000-37930019 | None:intergenic | 20.0% |
| !! | ATGAAAATCAATCAAAGAAA+TGG | - | chr3.2:37933928-37933947 | None:intergenic | 20.0% |
| !! | ATGATTAACAAAGCATATTA+TGG | - | chr3.2:37929808-37929827 | None:intergenic | 20.0% |
| !! | ATGTTAAGCAAAGTAAAATA+AGG | - | chr3.2:37933023-37933042 | None:intergenic | 20.0% |
| !! | ATTTATTCAACAATGATAGT+TGG | - | chr3.2:37933389-37933408 | None:intergenic | 20.0% |
| !! | CAATACCTTAATTACATTAA+GGG | - | chr3.2:37930704-37930723 | None:intergenic | 20.0% |
| !! | CATTTGATAAAATTTACCTT+TGG | - | chr3.2:37932643-37932662 | None:intergenic | 20.0% |
| !! | CCCAAAATATAAGTAAAAAT+TGG | - | chr3.2:37931975-37931994 | None:intergenic | 20.0% |
| !! | TCATTATTATGATCTAAATC+AGG | + | chr3.2:37934148-37934167 | MS.gene46946:CDS | 20.0% |
| !! | TCTTGAAAAAATATGTTCAT+CGG | - | chr3.2:37931035-37931054 | None:intergenic | 20.0% |
| !! | TGATATGAAAATCTGTATAT+CGG | - | chr3.2:37930733-37930752 | None:intergenic | 20.0% |
| !! | TTAAAAGTAAAAATTAGACC+TGG | + | chr3.2:37930201-37930220 | MS.gene46946:intron | 20.0% |
| !! | TTTCTGAACGAAATAATTTA+TGG | + | chr3.2:37932345-37932364 | MS.gene46946:intron | 20.0% |
| !! | TTTGATAAAATTTACCTTTG+GGG | - | chr3.2:37932641-37932660 | None:intergenic | 20.0% |
| !!! | AAAACATTTTTGTTTCAACA+CGG | + | chr3.2:37931270-37931289 | MS.gene46946:intron | 20.0% |
| !!! | AACATATTTTTGATAGACTA+TGG | + | chr3.2:37930242-37930261 | MS.gene46946:intron | 20.0% |
| !!! | AACATCACAAATTTTTTCAA+AGG | + | chr3.2:37933412-37933431 | MS.gene46946:intron | 20.0% |
| !!! | ACCAATTTTTGCTTATATTT+TGG | - | chr3.2:37931894-37931913 | None:intergenic | 20.0% |
| !!! | ATGATCATCATGTTTTATAT+AGG | + | chr3.2:37929726-37929745 | MS.gene46946:intron | 20.0% |
| !!! | ATTTTGTCATCAAAAGTAAA+AGG | - | chr3.2:37930508-37930527 | None:intergenic | 20.0% |
| !!! | CAAAGGTAAATTTTATCAAA+TGG | + | chr3.2:37932641-37932660 | MS.gene46946:intron | 20.0% |
| !!! | CCAATTTTTGCTTATATTTT+GGG | - | chr3.2:37931893-37931912 | None:intergenic | 20.0% |
| !!! | CTCTAACACTTATTTTTTAT+TGG | + | chr3.2:37931294-37931313 | MS.gene46946:intron | 20.0% |
| !!! | TATATGTTACATTCTTGTTT+AGG | + | chr3.2:37932005-37932024 | MS.gene46946:intron | 20.0% |
| !!! | TCATCAATCTTTTTTTCTTT+AGG | + | chr3.2:37933963-37933982 | MS.gene46946:intron | 20.0% |
| !!! | TCTAATATTCACTCTTTTAT+TGG | - | chr3.2:37932218-37932237 | None:intergenic | 20.0% |
| !!! | TCTTTTCATAATGAAATCAT+GGG | + | chr3.2:37930351-37930370 | MS.gene46946:intron | 20.0% |
| !!! | TGATCATCATGTTTTATATA+GGG | + | chr3.2:37929727-37929746 | MS.gene46946:intron | 20.0% |
| !!! | TTATCACTCCTATTTTTTAA+TGG | + | chr3.2:37931424-37931443 | MS.gene46946:intron | 20.0% |
| !!! | TTATTTTCTTCTTTCAATCA+TGG | + | chr3.2:37929857-37929876 | MS.gene46946:intron | 20.0% |
| !!! | TTCTTTTCATAATGAAATCA+TGG | + | chr3.2:37930350-37930369 | MS.gene46946:intron | 20.0% |
| !!! | TTGTATTATTTTTGTCTTGT+GGG | + | chr3.2:37931003-37931022 | MS.gene46946:intron | 20.0% |
| !!! | TTTTTACTTATATTTTGGGA+CGG | + | chr3.2:37931976-37931995 | MS.gene46946:intron | 20.0% |
| ! | AATATGAACTTCCAAAAAGT+TGG | + | chr3.2:37932781-37932800 | MS.gene46946:intron | 25.0% |
| ! | ACCATCCAAAAAAGATTTAA+AGG | - | chr3.2:37932876-37932895 | None:intergenic | 25.0% |
| ! | ACTATCATTGTTGAATAAGT+AGG | + | chr3.2:37933249-37933268 | MS.gene46946:intron | 25.0% |
| ! | ACTTATTCAACAATGATAGT+TGG | - | chr3.2:37933249-37933268 | None:intergenic | 25.0% |
| ! | AGGATTAAATTAATTGAGGT+TGG | - | chr3.2:37930107-37930126 | None:intergenic | 25.0% |
| ! | AGGTTGGATCAAATATATAT+GGG | - | chr3.2:37930091-37930110 | None:intergenic | 25.0% |
| ! | ATATGAGATCTCTTAATTGA+AGG | - | chr3.2:37929778-37929797 | None:intergenic | 25.0% |
| ! | ATCCAAAAAAGATTTAAAGG+TGG | - | chr3.2:37932873-37932892 | None:intergenic | 25.0% |
| ! | ATGATGTCATAGAGAAAATA+AGG | + | chr3.2:37933190-37933209 | MS.gene46946:intron | 25.0% |
| ! | CATTCTCTTAACATTATTGA+TGG | - | chr3.2:37932507-37932526 | None:intergenic | 25.0% |
| ! | CCAATACCTTAATTACATTA+AGG | - | chr3.2:37930705-37930724 | None:intergenic | 25.0% |
| ! | CCCAAAATATAAGCAAAAAT+TGG | + | chr3.2:37931890-37931909 | MS.gene46946:intron | 25.0% |
| ! | CCTTAATGTAATTAAGGTAT+TGG | + | chr3.2:37930702-37930721 | MS.gene46946:intron | 25.0% |
| ! | CTAATCCCTTAATGTAATTA+AGG | + | chr3.2:37930696-37930715 | MS.gene46946:intron | 25.0% |
| ! | CTTTGGTACCATTAAAAAAT+AGG | - | chr3.2:37931435-37931454 | None:intergenic | 25.0% |
| ! | GATATGAAAATCTGTATATC+GGG | - | chr3.2:37930732-37930751 | None:intergenic | 25.0% |
| ! | GGAATATATAGAACTAAAGT+AGG | - | chr3.2:37930313-37930332 | None:intergenic | 25.0% |
| ! | TATGAGATCTCTTAATTGAA+GGG | - | chr3.2:37929777-37929796 | None:intergenic | 25.0% |
| ! | TCAACAAAAGTTAATGTATC+TGG | - | chr3.2:37931952-37931971 | None:intergenic | 25.0% |
| ! | TCAACGAAAGTTAATGTATT+TGG | + | chr3.2:37931913-37931932 | MS.gene46946:intron | 25.0% |
| ! | TCACATGCTATATATGTAAT+AGG | - | chr3.2:37933113-37933132 | None:intergenic | 25.0% |
| ! | TTATATGAAGCAATTACCAT+AGG | + | chr3.2:37931599-37931618 | MS.gene46946:intron | 25.0% |
| ! | TTTAATCAAGGTGAATTCTT+TGG | - | chr3.2:37931452-37931471 | None:intergenic | 25.0% |
| !! | AACAATAATTCTAAGAGAAG+TGG | + | chr3.2:37929588-37929607 | MS.gene46946:CDS | 25.0% |
| !! | AAGAAAGAGAATTTTCCATA+AGG | - | chr3.2:37930335-37930354 | None:intergenic | 25.0% |
| !! | AAGAAGAGATGTAATGTTTT+AGG | - | chr3.2:37932914-37932933 | None:intergenic | 25.0% |
| !! | AGAAAGAGAATTTTCCATAA+GGG | - | chr3.2:37930334-37930353 | None:intergenic | 25.0% |
| !! | AGGTAAACACTTACTATTTT+TGG | + | chr3.2:37933292-37933311 | MS.gene46946:intron | 25.0% |
| !! | TACCTTTGAAAAAATTTGTG+AGG | - | chr3.2:37933277-37933296 | None:intergenic | 25.0% |
| !! | TAGTTCTATATATTCCCTTA+TGG | + | chr3.2:37930317-37930336 | MS.gene46946:intron | 25.0% |
| !! | TTTGCAAATTAATTTTGCAG+AGG | + | chr3.2:37929969-37929988 | MS.gene46946:intron | 25.0% |
| !!! | AACCTCACAAATTTTTTCAA+AGG | + | chr3.2:37933272-37933291 | MS.gene46946:intron | 25.0% |
| !!! | ACCTTTAAATCTTTTTTGGA+TGG | + | chr3.2:37932872-37932891 | MS.gene46946:intron | 25.0% |
| !!! | AGATGGACTATTATTAGTTT+TGG | - | chr3.2:37932966-37932985 | None:intergenic | 25.0% |
| !!! | CTTTGATTGATTTTCATTTC+TGG | + | chr3.2:37933931-37933950 | MS.gene46946:intron | 25.0% |
| !!! | GATGAACATATTTTTTCAAG+AGG | + | chr3.2:37931034-37931053 | MS.gene46946:intron | 25.0% |
| !!! | GTTGTATTATTTTTGTCTTG+TGG | + | chr3.2:37931002-37931021 | MS.gene46946:intron | 25.0% |
| !!! | TCAAAGAAATGGACTAATAT+AGG | - | chr3.2:37933917-37933936 | None:intergenic | 25.0% |
| !!! | TCAATCATGGTTTTAAATTG+CGG | + | chr3.2:37929870-37929889 | MS.gene46946:intron | 25.0% |
| !!! | TCTTCACTTTTTCCTTTTTT+TGG | - | chr3.2:37932046-37932065 | None:intergenic | 25.0% |
| !!! | TTTTTGCTTATATTTTGGGA+CGG | - | chr3.2:37931889-37931908 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGGTAGATCATGA+AGG | - | chr3.2:37933628-37933647 | None:intergenic | 25.0% |
| AACGTTTGTGAGATATACAT+GGG | - | chr3.2:37930473-37930492 | None:intergenic | 30.0% | |
| AAGAAACAAAATCCAGTCTA+GGG | + | chr3.2:37930378-37930397 | MS.gene46946:intron | 30.0% | |
| AAGATGTGTATATCTTGATG+AGG | - | chr3.2:37931479-37931498 | None:intergenic | 30.0% | |
| ACAATTACAACAGTAGTATG+TGG | + | chr3.2:37930418-37930437 | MS.gene46946:intron | 30.0% | |
| ACATGAACTATATATGTACC+TGG | - | chr3.2:37930065-37930084 | None:intergenic | 30.0% | |
| CAATAATGTTAAGAGAATGC+TGG | + | chr3.2:37932508-37932527 | MS.gene46946:intron | 30.0% | |
| CAATATAGACTCCTGAAAAA+AGG | - | chr3.2:37932994-37933013 | None:intergenic | 30.0% | |
| GAGGTTGGATCAAATATATA+TGG | - | chr3.2:37930092-37930111 | None:intergenic | 30.0% | |
| TATAGAACTAAAGTAGGAAC+AGG | - | chr3.2:37930307-37930326 | None:intergenic | 30.0% | |
| TTGAATATGATGCAAGTGAA+GGG | + | chr3.2:37930009-37930028 | MS.gene46946:CDS | 30.0% | |
| TTTAGATTTCCGAACAACAT+AGG | - | chr3.2:37932259-37932278 | None:intergenic | 30.0% | |
| TTTGAATATGATGCAAGTGA+AGG | + | chr3.2:37930008-37930027 | MS.gene46946:CDS | 30.0% | |
| ! | CATTCTTTTATACGAGATGA+GGG | - | chr3.2:37930770-37930789 | None:intergenic | 30.0% |
| ! | CTGGAGATGACTTTTAATAT+GGG | - | chr3.2:37930046-37930065 | None:intergenic | 30.0% |
| ! | GCATGTTCACGTTTTTATAA+AGG | + | chr3.2:37930892-37930911 | MS.gene46946:intron | 30.0% |
| ! | GTTAACACACAGTTTTACTT+CGG | - | chr3.2:37933091-37933110 | None:intergenic | 30.0% |
| ! | TCATTCTTTTATACGAGATG+AGG | - | chr3.2:37930771-37930790 | None:intergenic | 30.0% |
| !! | ACAAAGTATTGATGAAGTTC+CGG | - | chr3.2:37929660-37929679 | None:intergenic | 30.0% |
| !! | AGTTGTAAAGTTGATGTATG+TGG | + | chr3.2:37933784-37933803 | MS.gene46946:intron | 30.0% |
| !! | GAAAGTCTTTTGTTGTGTAA+AGG | - | chr3.2:37934110-37934129 | None:intergenic | 30.0% |
| !! | TGATGAGGTGATTTTAATCA+AGG | - | chr3.2:37931464-37931483 | None:intergenic | 30.0% |
| !!! | CTTTTTTCAGGAGTCTATAT+TGG | + | chr3.2:37932992-37933011 | MS.gene46946:intron | 30.0% |
| !!! | GTCCACCTTTAAATCTTTTT+TGG | + | chr3.2:37932868-37932887 | MS.gene46946:intron | 30.0% |
| AAAGTAACAACGTAGAGAAG+TGG | - | chr3.2:37930566-37930585 | None:intergenic | 35.0% | |
| AAGTAACAACGTAGAGAAGT+GGG | - | chr3.2:37930565-37930584 | None:intergenic | 35.0% | |
| AATCACACTTACACCAAGTA+TGG | - | chr3.2:37932284-37932303 | None:intergenic | 35.0% | |
| AATGTTAAGAGAATGCTGGT+CGG | + | chr3.2:37932512-37932531 | MS.gene46946:intron | 35.0% | |
| AGAGAAGTGGGGTTTATAAT+GGG | - | chr3.2:37930553-37930572 | None:intergenic | 35.0% | |
| AGCACTAATCCTATGTTGTT+CGG | + | chr3.2:37932247-37932266 | MS.gene46946:intron | 35.0% | |
| ATTACCATAGGTTAGGTACA+TGG | + | chr3.2:37931611-37931630 | MS.gene46946:intron | 35.0% | |
| ATTGATATTCCTCGATCTGA+AGG | - | chr3.2:37934075-37934094 | None:intergenic | 35.0% | |
| CAACGTTTGTGAGATATACA+TGG | - | chr3.2:37930474-37930493 | None:intergenic | 35.0% | |
| CCAAACTATATCAGAGACTT+TGG | + | chr3.2:37933704-37933723 | MS.gene46946:intron | 35.0% | |
| CCAAAGTCTCTGATATAGTT+TGG | - | chr3.2:37933707-37933726 | None:intergenic | 35.0% | |
| CCATATTAAAAGTCATCTCC+AGG | + | chr3.2:37930044-37930063 | MS.gene46946:CDS | 35.0% | |
| GAAAAAATATGTTCATCGGC+TGG | - | chr3.2:37931031-37931050 | None:intergenic | 35.0% | |
| GAAGAAACAAAATCCAGTCT+AGG | + | chr3.2:37930377-37930396 | MS.gene46946:intron | 35.0% | |
| GGAAATCTAAAAGCCATACT+TGG | + | chr3.2:37932268-37932287 | MS.gene46946:intron | 35.0% | |
| GTTCAAACTGTTGAAAGTCT+TGG | + | chr3.2:37929678-37929697 | MS.gene46946:CDS | 35.0% | |
| TAGACTCCTGAAAAAAGGTA+TGG | - | chr3.2:37932989-37933008 | None:intergenic | 35.0% | |
| TAGAGAAGTGGGGTTTATAA+TGG | - | chr3.2:37930554-37930573 | None:intergenic | 35.0% | |
| TGAAGCAATTACCATAGGTT+AGG | + | chr3.2:37931604-37931623 | MS.gene46946:intron | 35.0% | |
| TGAATATGATGCAAGTGAAG+GGG | + | chr3.2:37930010-37930029 | MS.gene46946:CDS | 35.0% | |
| TTACCATAGGTTAGGTACAT+GGG | + | chr3.2:37931612-37931631 | MS.gene46946:intron | 35.0% | |
| TTGATATTCCTCGATCTGAA+GGG | - | chr3.2:37934074-37934093 | None:intergenic | 35.0% | |
| ! | CCTGGAGATGACTTTTAATA+TGG | - | chr3.2:37930047-37930066 | None:intergenic | 35.0% |
| ! | GTAAGAGTTCACCAACTTTT+TGG | - | chr3.2:37932795-37932814 | None:intergenic | 35.0% |
| ! | TATGCGAAGTTCCGTTATTT+TGG | - | chr3.2:37934189-37934208 | None:intergenic | 35.0% |
| ! | TGAGATGCTATAAAAGCACA+CGG | + | chr3.2:37931753-37931772 | MS.gene46946:intron | 35.0% |
| ! | TTTTCTCTTTGTCTTTCGTC+AGG | + | chr3.2:37931696-37931715 | MS.gene46946:intron | 35.0% |
| !! | ATGCGAAGTTCCGTTATTTT+GGG | - | chr3.2:37934188-37934207 | None:intergenic | 35.0% |
| !!! | TACTTATATTTTGGGACGGA+GGG | + | chr3.2:37931980-37931999 | MS.gene46946:intron | 35.0% |
| !!! | TTACTTATATTTTGGGACGG+AGG | + | chr3.2:37931979-37931998 | MS.gene46946:intron | 35.0% |
| AACTATTCTTGCACCAACAC+TGG | + | chr3.2:37932565-37932584 | MS.gene46946:CDS | 40.0% | |
| ACCAACACTGGAAGAAAACA+AGG | + | chr3.2:37932577-37932596 | MS.gene46946:CDS | 40.0% | |
| AGTAACAACGTAGAGAAGTG+GGG | - | chr3.2:37930564-37930583 | None:intergenic | 40.0% | |
| CAAACTGTTGAAAGTCTTGG+TGG | + | chr3.2:37929681-37929700 | MS.gene46946:CDS | 40.0% | |
| CCATGTTAGACCTCTTCTTT+GGG | + | chr3.2:37933599-37933618 | MS.gene46946:intron | 40.0% | |
| CTGCAAAAAATACCCTAGAC+TGG | - | chr3.2:37930393-37930412 | None:intergenic | 40.0% | |
| TAGATGTACAGGAACGTGAA+GGG | + | chr3.2:37932539-37932558 | MS.gene46946:intron | 40.0% | |
| TCCATGTTAGACCTCTTCTT+TGG | + | chr3.2:37933598-37933617 | MS.gene46946:intron | 40.0% | |
| TCGATCTGAAGGGAAATGAA+AGG | - | chr3.2:37934064-37934083 | None:intergenic | 40.0% | |
| TTAGATGTACAGGAACGTGA+AGG | + | chr3.2:37932538-37932557 | MS.gene46946:intron | 40.0% | |
| TTTCATTTCCCTTCAGATCG+AGG | + | chr3.2:37934063-37934082 | MS.gene46946:intron | 40.0% | |
| ! | CCTGAAAAAAGGTATGGAGA+TGG | - | chr3.2:37932983-37933002 | None:intergenic | 40.0% |
| !! | TGCGAAGTTCCGTTATTTTG+GGG | - | chr3.2:37934187-37934206 | None:intergenic | 40.0% |
| !! | TGGTCGGTTTTTAGATGTAC+AGG | + | chr3.2:37932528-37932547 | MS.gene46946:intron | 40.0% |
| !!! | CCATCTCCATACCTTTTTTC+AGG | + | chr3.2:37932980-37932999 | MS.gene46946:intron | 40.0% |
| !!! | GACGGTGAATTTTTTCGCTA+TGG | + | chr3.2:37929927-37929946 | MS.gene46946:intron | 40.0% |
| !!! | TGCTTATATTTTGGGACGGA+AGG | - | chr3.2:37931885-37931904 | None:intergenic | 40.0% |
| AGACCAAGAGAAGAAGATCC+AGG | - | chr3.2:37930222-37930241 | None:intergenic | 45.0% | |
| AGACCTGGATCTTCTTCTCT+TGG | + | chr3.2:37930216-37930235 | MS.gene46946:intron | 45.0% | |
| ATGCCCATGTACCTAACCTA+TGG | - | chr3.2:37931618-37931637 | None:intergenic | 45.0% | |
| CCCAAAGAAGAGGTCTAACA+TGG | - | chr3.2:37933602-37933621 | None:intergenic | 45.0% | |
| !! | ATGAAGGCATCCCAAAGAAG+AGG | - | chr3.2:37933612-37933631 | None:intergenic | 45.0% |
| !! | TTACCTTTGGGGTGAACAAC+TGG | - | chr3.2:37932630-37932649 | None:intergenic | 45.0% |
| !!! | GCCTTGTTTTCTTCCAGTGT+TGG | - | chr3.2:37932581-37932600 | None:intergenic | 45.0% |
| !!! | GCGAAGTTCCGTTATTTTGG+GGG | - | chr3.2:37934186-37934205 | None:intergenic | 45.0% |
| !! | AAAATGAAATAAAAATAAAA+GGG | - | chr3.2:37933848-37933867 | None:intergenic | 5.0% |
| !! | TAAAATGAAATAAAAATAAA+AGG | - | chr3.2:37933849-37933868 | None:intergenic | 5.0% |
| CCCTCATGCCCCCAAAATAA+CGG | + | chr3.2:37934175-37934194 | MS.gene46946:CDS | 50.0% | |
| GGTGAACAACTGGAGCAGAT+TGG | - | chr3.2:37932620-37932639 | None:intergenic | 50.0% | |
| !!! | CCGTTATTTTGGGGGCATGA+GGG | - | chr3.2:37934178-37934197 | None:intergenic | 50.0% |
| !!! | GGCGTGGCTGTTTTGATTTG+TGG | - | chr3.2:37929626-37929645 | None:intergenic | 50.0% |
| !!! | TCCGTTATTTTGGGGGCATG+AGG | - | chr3.2:37934179-37934198 | None:intergenic | 50.0% |
| CAAAACAGCCACGCCTTCGA+TGG | + | chr3.2:37929631-37929650 | MS.gene46946:CDS | 55.0% | |
| GAAGTTCCGGTGTCCATCGA+AGG | - | chr3.2:37929647-37929666 | None:intergenic | 55.0% | |
| GCTCCAGTTGTTCACCCCAA+AGG | + | chr3.2:37932624-37932643 | MS.gene46946:CDS | 55.0% | |
| GCCACGCCTTCGATGGACAC+CGG | + | chr3.2:37929638-37929657 | MS.gene46946:CDS | 65.0% | |
| TCCGGTGTCCATCGAAGGCG+TGG | - | chr3.2:37929642-37929661 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 37929582 | 37934217 | 37929582 | ID=MS.gene46946 |
| chr3.2 | mRNA | 37929582 | 37934217 | 37929582 | ID=MS.gene46946.t1;Parent=MS.gene46946 |
| chr3.2 | exon | 37929582 | 37929711 | 37929582 | ID=MS.gene46946.t1.exon1;Parent=MS.gene46946.t1 |
| chr3.2 | CDS | 37929582 | 37929711 | 37929582 | ID=cds.MS.gene46946.t1;Parent=MS.gene46946.t1 |
| chr3.2 | exon | 37929989 | 37930065 | 37929989 | ID=MS.gene46946.t1.exon2;Parent=MS.gene46946.t1 |
| chr3.2 | CDS | 37929989 | 37930065 | 37929989 | ID=cds.MS.gene46946.t1;Parent=MS.gene46946.t1 |
| chr3.2 | exon | 37932542 | 37932645 | 37932542 | ID=MS.gene46946.t1.exon3;Parent=MS.gene46946.t1 |
| chr3.2 | CDS | 37932542 | 37932645 | 37932542 | ID=cds.MS.gene46946.t1;Parent=MS.gene46946.t1 |
| chr3.2 | exon | 37934079 | 37934217 | 37934079 | ID=MS.gene46946.t1.exon4;Parent=MS.gene46946.t1 |
| chr3.2 | CDS | 37934079 | 37934217 | 37934079 | ID=cds.MS.gene46946.t1;Parent=MS.gene46946.t1 |
| Gene Sequence |
| Protein sequence |
