Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46980.t1 | XP_013459310.1 | 98.7 | 298 | 4 | 0 | 3 | 300 | 26 | 323 | 1.10E-147 | 532.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46980.t1 | O48946 | 50.6 | 166 | 76 | 4 | 3 | 167 | 28 | 188 | 1.4e-34 | 148.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46980.t1 | A0A072UVE3 | 98.7 | 298 | 4 | 0 | 3 | 300 | 26 | 323 | 7.8e-148 | 532.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene46980.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46980.t1 | MTR_3g436010 | 98.658 | 298 | 4 | 0 | 3 | 300 | 26 | 323 | 0.0 | 610 |
| MS.gene46980.t1 | MTR_3g436010 | 98.673 | 226 | 3 | 0 | 3 | 228 | 26 | 251 | 5.72e-170 | 471 |
| MS.gene46980.t1 | MTR_3g107520 | 59.639 | 166 | 62 | 3 | 4 | 167 | 30 | 192 | 5.47e-47 | 169 |
| MS.gene46980.t1 | MTR_3g030040 | 30.702 | 228 | 127 | 5 | 4 | 218 | 11 | 220 | 2.57e-28 | 115 |
| MS.gene46980.t1 | MTR_1g098550 | 55.422 | 83 | 37 | 0 | 9 | 91 | 38 | 120 | 1.79e-27 | 112 |
| MS.gene46980.t1 | MTR_1g098550 | 55.422 | 83 | 37 | 0 | 9 | 91 | 34 | 116 | 1.80e-27 | 112 |
| MS.gene46980.t1 | MTR_4g130510 | 63.380 | 71 | 26 | 0 | 2 | 72 | 25 | 95 | 7.07e-27 | 110 |
| MS.gene46980.t1 | MTR_4g130510 | 63.380 | 71 | 26 | 0 | 2 | 72 | 25 | 95 | 8.31e-27 | 110 |
| MS.gene46980.t1 | MTR_4g130510 | 63.380 | 71 | 26 | 0 | 2 | 72 | 25 | 95 | 2.55e-25 | 106 |
| MS.gene46980.t1 | MTR_4g130510 | 63.380 | 71 | 26 | 0 | 2 | 72 | 25 | 95 | 6.06e-25 | 105 |
| MS.gene46980.t1 | MTR_2g035780 | 38.760 | 129 | 72 | 3 | 5 | 131 | 28 | 151 | 4.01e-24 | 102 |
| MS.gene46980.t1 | MTR_8g063270 | 59.155 | 71 | 29 | 0 | 2 | 72 | 25 | 95 | 7.49e-24 | 102 |
| MS.gene46980.t1 | MTR_7g057160 | 50.000 | 132 | 60 | 1 | 170 | 295 | 40 | 171 | 1.01e-23 | 95.5 |
| MS.gene46980.t1 | MTR_8g092590 | 34.659 | 176 | 101 | 4 | 4 | 167 | 29 | 202 | 1.30e-23 | 101 |
| MS.gene46980.t1 | MTR_8g037260 | 37.143 | 175 | 89 | 8 | 4 | 161 | 11 | 181 | 9.40e-23 | 99.0 |
| MS.gene46980.t1 | MTR_7g106680 | 29.956 | 227 | 113 | 7 | 2 | 228 | 8 | 188 | 1.19e-20 | 92.8 |
| MS.gene46980.t1 | MTR_3g007770 | 53.731 | 67 | 31 | 0 | 6 | 72 | 31 | 97 | 1.10e-19 | 89.7 |
| MS.gene46980.t1 | MTR_8g086600 | 38.710 | 62 | 38 | 0 | 11 | 72 | 6 | 67 | 9.92e-12 | 65.9 |
| MS.gene46980.t1 | MTR_2g016630 | 43.548 | 62 | 32 | 1 | 14 | 72 | 9 | 70 | 7.48e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46980.t1 | AT5G11260 | 72.519 | 131 | 35 | 1 | 168 | 297 | 33 | 163 | 6.00e-56 | 179 |
| MS.gene46980.t1 | AT5G11260 | 72.174 | 115 | 31 | 1 | 168 | 281 | 33 | 147 | 2.43e-50 | 165 |
| MS.gene46980.t1 | AT4G32410 | 58.434 | 166 | 63 | 4 | 3 | 167 | 28 | 188 | 1.74e-47 | 171 |
| MS.gene46980.t1 | AT2G25540 | 57.576 | 132 | 52 | 2 | 4 | 134 | 23 | 151 | 2.21e-43 | 159 |
| MS.gene46980.t1 | AT3G17609 | 55.372 | 121 | 47 | 3 | 170 | 285 | 23 | 141 | 2.62e-33 | 120 |
| MS.gene46980.t1 | AT3G17609 | 54.867 | 113 | 44 | 3 | 178 | 285 | 2 | 112 | 1.52e-30 | 112 |
| MS.gene46980.t1 | AT3G17609 | 63.750 | 80 | 29 | 0 | 206 | 285 | 47 | 126 | 1.16e-28 | 107 |
| MS.gene46980.t1 | AT3G17609 | 63.750 | 80 | 29 | 0 | 206 | 285 | 48 | 127 | 1.18e-28 | 107 |
| MS.gene46980.t1 | AT5G05170 | 38.764 | 178 | 89 | 6 | 4 | 164 | 10 | 184 | 2.22e-27 | 112 |
| MS.gene46980.t1 | AT5G17420 | 60.563 | 71 | 28 | 0 | 2 | 72 | 25 | 95 | 1.04e-26 | 110 |
| MS.gene46980.t1 | AT4G39350 | 56.522 | 69 | 30 | 0 | 4 | 72 | 29 | 97 | 7.30e-23 | 99.4 |
| MS.gene46980.t1 | AT5G09870 | 57.971 | 69 | 29 | 0 | 4 | 72 | 29 | 97 | 8.06e-23 | 99.0 |
| MS.gene46980.t1 | AT5G64740 | 57.971 | 69 | 29 | 0 | 4 | 72 | 29 | 97 | 3.48e-22 | 97.4 |
| MS.gene46980.t1 | AT5G44030 | 33.571 | 140 | 73 | 3 | 8 | 127 | 17 | 156 | 1.99e-20 | 92.0 |
| MS.gene46980.t1 | AT5G44030 | 42.529 | 87 | 48 | 1 | 8 | 92 | 17 | 103 | 5.71e-20 | 90.9 |
| MS.gene46980.t1 | AT2G21770 | 54.545 | 66 | 30 | 0 | 7 | 72 | 32 | 97 | 1.50e-19 | 89.4 |
| MS.gene46980.t1 | AT4G18780 | 33.898 | 118 | 64 | 3 | 13 | 125 | 8 | 116 | 2.30e-13 | 70.9 |
Find 76 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACCATTCAAATTCTTTA+AGG | 0.156035 | 3.1:-31513735 | None:intergenic |
| TGCTGGTCCAGAACGTGTTC+AGG | 0.289263 | 3.1:+31515607 | MS.gene46980:CDS |
| TAGCCGTTTGCTTTCTTTGT+CGG | 0.302350 | 3.1:-31515669 | None:intergenic |
| AACTCTGTACCTGGTTGCTT+TGG | 0.303795 | 3.1:-31514827 | None:intergenic |
| CTAATTTCATTCAGCATTGT+TGG | 0.308963 | 3.1:-31516567 | None:intergenic |
| GCTGACCTCTCTTCATCTTC+TGG | 0.318002 | 3.1:+31514122 | MS.gene46980:CDS |
| GCAAGCAAGGGAGAGGAAAA+AGG | 0.332419 | 3.1:+31515842 | MS.gene46980:CDS |
| GCAGATTCACCTCCCATATC+TGG | 0.342040 | 3.1:-31515548 | None:intergenic |
| CCAGCACCCTGAACACGTTC+TGG | 0.345136 | 3.1:-31515614 | None:intergenic |
| GCAAACTACATCAGGTCCTT+TGG | 0.365962 | 3.1:+31514766 | MS.gene46980:CDS |
| TTTACGAGAGGCTGATGTTC+CGG | 0.366238 | 3.1:-31515570 | None:intergenic |
| TGACCATTCAAATTCTTTAA+GGG | 0.374526 | 3.1:-31513734 | None:intergenic |
| GATCAGAAGAGTGCCAGATA+TGG | 0.377906 | 3.1:+31515535 | MS.gene46980:CDS |
| CGTTTGCTTTCTTTGTCGGC+TGG | 0.382290 | 3.1:-31515665 | None:intergenic |
| CCAGTTGTGCATTTGTGAAA+TGG | 0.397798 | 3.1:-31514169 | None:intergenic |
| TTAAGAAATGAGGTCAAGTA+TGG | 0.400951 | 3.1:+31514056 | MS.gene46980:CDS |
| TCTTGCATTGTGGACATGAT+TGG | 0.409151 | 3.1:-31513880 | None:intergenic |
| CCATTTCACAAATGCACAAC+TGG | 0.418366 | 3.1:+31514169 | MS.gene46980:CDS |
| CCAGAACGTGTTCAGGGTGC+TGG | 0.423989 | 3.1:+31515614 | MS.gene46980:CDS |
| CAGTTGTGCATTTGTGAAAT+GGG | 0.426804 | 3.1:-31514168 | None:intergenic |
| CAAACTACATCAGGTCCTTT+GGG | 0.435196 | 3.1:+31514767 | MS.gene46980:CDS |
| GCTCTGAATTCTTCTTCTCT+AGG | 0.454026 | 3.1:-31515899 | None:intergenic |
| AAACCCTTAAAGAATTTGAA+TGG | 0.465051 | 3.1:+31513731 | MS.gene46980:CDS |
| GTTTGCTTTCTTTGTCGGCT+GGG | 0.469429 | 3.1:-31515664 | None:intergenic |
| CAATCTGTGCAAACTACATC+AGG | 0.479607 | 3.1:+31514758 | MS.gene46980:CDS |
| ATCAGAAGAGTGCCAGATAT+GGG | 0.480465 | 3.1:+31515536 | MS.gene46980:CDS |
| GAGTTTCAGCTCAGCAAGCA+AGG | 0.496174 | 3.1:+31515829 | MS.gene46980:CDS |
| AAAGGCACTGGTTCAACTGC+TGG | 0.500784 | 3.1:+31515590 | MS.gene46980:CDS |
| TGCTAAGGCAGGATGGCAAT+GGG | 0.509509 | 3.1:+31514091 | MS.gene46980:CDS |
| TGAAAATCAAATGCTGAGAC+AGG | 0.509539 | 3.1:+31515950 | MS.gene46980:CDS |
| ATTCTTGTTATGAATACGAA+TGG | 0.515816 | 3.1:+31513846 | MS.gene46980:CDS |
| CAGCCGACAAAGAAAGCAAA+CGG | 0.518077 | 3.1:+31515666 | MS.gene46980:CDS |
| AAGAAAGCAAACGGCTAAAG+AGG | 0.525143 | 3.1:+31515675 | MS.gene46980:CDS |
| ATGCTAAGGCAGGATGGCAA+TGG | 0.525935 | 3.1:+31514090 | MS.gene46980:CDS |
| CAAATATGTGGTGATACTGT+TGG | 0.528030 | 3.1:+31513764 | MS.gene46980:CDS |
| CAGCTCAGCAAGCAAGGGAG+AGG | 0.533112 | 3.1:+31515835 | MS.gene46980:CDS |
| GCTGGTCCAGAACGTGTTCA+GGG | 0.533529 | 3.1:+31515608 | MS.gene46980:CDS |
| CGTGTTCAGGGTGCTGGAGA+GGG | 0.536653 | 3.1:+31515620 | MS.gene46980:CDS |
| TCAGATGATCCTCGAGTGAA+AGG | 0.541668 | 3.1:+31514005 | MS.gene46980:intron |
| CAAGGAAATAATGCTAAGGC+AGG | 0.555264 | 3.1:+31514080 | MS.gene46980:CDS |
| AACACAACAGCTAGCAGGAG+AGG | 0.559475 | 3.1:+31516530 | MS.gene46980:CDS |
| TGGTTGCTTTGGATCAACAT+AGG | 0.561478 | 3.1:-31514816 | None:intergenic |
| AAAGGCATACTTGAGTGACT+TGG | 0.562983 | 3.1:+31515860 | MS.gene46980:CDS |
| TCATCACCTCCTTTCACTCG+AGG | 0.567633 | 3.1:-31514014 | None:intergenic |
| ACGTGTTCAGGGTGCTGGAG+AGG | 0.570680 | 3.1:+31515619 | MS.gene46980:CDS |
| TCAGCCTCTCGTAAAGGCAC+TGG | 0.570711 | 3.1:+31515578 | MS.gene46980:CDS |
| TGAAGAACACAACAGCTAGC+AGG | 0.571660 | 3.1:+31516525 | MS.gene46980:CDS |
| GGAACATCAGCCTCTCGTAA+AGG | 0.572244 | 3.1:+31515572 | MS.gene46980:CDS |
| AGCAGGAGAGGAAGCAATGG+TGG | 0.577077 | 3.1:+31516542 | MS.gene46980:CDS |
| GAAATAATGCTAAGGCAGGA+TGG | 0.579382 | 3.1:+31514084 | MS.gene46980:CDS |
| GCTAGCAGGAGAGGAAGCAA+TGG | 0.581690 | 3.1:+31516539 | MS.gene46980:CDS |
| AATGAGGTCAAGTATGGTCA+AGG | 0.586685 | 3.1:+31514062 | MS.gene46980:CDS |
| ACTGTTGGATTAACAGCCAC+CGG | 0.592728 | 3.1:+31513779 | MS.gene46980:CDS |
| AGTTTCAGCTCAGCAAGCAA+GGG | 0.598096 | 3.1:+31515830 | MS.gene46980:CDS |
| TGGTCAAGGAAATAATGCTA+AGG | 0.601648 | 3.1:+31514076 | MS.gene46980:CDS |
| GGTCAAATCTGTCAAATATG+TGG | 0.604762 | 3.1:+31513752 | MS.gene46980:CDS |
| TTGAATCTAGTCTTGCATTG+TGG | 0.607208 | 3.1:-31513890 | None:intergenic |
| CATAACAAGAATAACAAAGT+GGG | 0.607961 | 3.1:-31513835 | None:intergenic |
| TGTCGACGATTTAAGAAATG+AGG | 0.613188 | 3.1:+31514046 | MS.gene46980:CDS |
| GCAAGCAACAAAGACTTCGC+CGG | 0.615968 | 3.1:-31513798 | None:intergenic |
| TATGTTGATCCAAAGCAACC+AGG | 0.626073 | 3.1:+31514818 | MS.gene46980:CDS |
| AGCAACAAAGACTTCGCCGG+TGG | 0.627106 | 3.1:-31513795 | None:intergenic |
| TGAACCAGTGCCTTTACGAG+AGG | 0.628738 | 3.1:-31515582 | None:intergenic |
| TCATAACAAGAATAACAAAG+TGG | 0.629424 | 3.1:-31513836 | None:intergenic |
| ACTAGATTCAAAAGTCACAA+AGG | 0.638228 | 3.1:+31513902 | MS.gene46980:CDS |
| GATATGGGAGGTGAATCTGC+CGG | 0.641842 | 3.1:+31515551 | MS.gene46980:CDS |
| GGAGAGGGTCAAAAGAAGAG+AGG | 0.648990 | 3.1:+31515635 | MS.gene46980:CDS |
| AGTTGTGCATTTGTGAAATG+GGG | 0.650261 | 3.1:-31514167 | None:intergenic |
| CATGTCCAGAAGATGAAGAG+AGG | 0.650710 | 3.1:-31514127 | None:intergenic |
| AAAATGGTAATAGGCTACTG+AGG | 0.652705 | 3.1:+31515802 | MS.gene46980:intron |
| GATGATCCTCGAGTGAAAGG+AGG | 0.657821 | 3.1:+31514008 | MS.gene46980:intron |
| ACAAGAATAACAAAGTGGGA+AGG | 0.660604 | 3.1:-31513831 | None:intergenic |
| TGAGTATCAGAAGTAGCACA+TGG | 0.676546 | 3.1:-31514737 | None:intergenic |
| AGAAGAGTGCCAGATATGGG+AGG | 0.694389 | 3.1:+31515539 | MS.gene46980:CDS |
| AAAGTGGGAAGGAACACTCG+TGG | 0.715900 | 3.1:-31513820 | None:intergenic |
| TCCAGGTCTTGAGAGTGACG+AGG | 0.727846 | 3.1:+31515511 | MS.gene46980:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTAAGAAAGTAAAATTTA+TGG | + | chr3.1:31514500-31514519 | MS.gene46980:intron | 15.0% |
| !! | TTAACTTATATATTCACAAT+TGG | + | chr3.1:31514260-31514279 | MS.gene46980:intron | 15.0% |
| !!! | ATACTAATTGTATCTTTTTA+TGG | + | chr3.1:31514695-31514714 | MS.gene46980:intron | 15.0% |
| !!! | ATTAAATGTGAGATAATTTT+TGG | + | chr3.1:31514653-31514672 | MS.gene46980:intron | 15.0% |
| !!! | TCTAAAATATTGTTTTAGAA+AGG | + | chr3.1:31516165-31516184 | MS.gene46980:intron | 15.0% |
| !!! | TGATTTGAACTTTTTAAAAT+CGG | + | chr3.1:31514433-31514452 | MS.gene46980:intron | 15.0% |
| !! | AAAGTTTATGCATATTGAAA+AGG | - | chr3.1:31514932-31514951 | None:intergenic | 20.0% |
| !! | AATAAAATGGTAATCTTGAT+TGG | + | chr3.1:31515442-31515461 | MS.gene46980:intron | 20.0% |
| !! | AATACTAACAATATTGACAT+AGG | - | chr3.1:31516348-31516367 | None:intergenic | 20.0% |
| !! | ATACATTAAAGGAATTCTAT+CGG | - | chr3.1:31515243-31515262 | None:intergenic | 20.0% |
| !! | ATAGAAGTAAAAGTCTTTAT+AGG | + | chr3.1:31514986-31515005 | MS.gene46980:intron | 20.0% |
| !! | CATCACATGAATAAATAAAA+TGG | + | chr3.1:31515429-31515448 | MS.gene46980:intron | 20.0% |
| !! | TCTTAATTTAGACAATGAAA+AGG | - | chr3.1:31515052-31515071 | None:intergenic | 20.0% |
| !! | TTCATTTAATGGTATATGAT+TGG | + | chr3.1:31516488-31516507 | MS.gene46980:intron | 20.0% |
| !!! | AATTCATTGTGAGAAATTTT+GGG | - | chr3.1:31516448-31516467 | None:intergenic | 20.0% |
| !!! | AATTTTTAGACTCTTGAATT+CGG | + | chr3.1:31514207-31514226 | MS.gene46980:intron | 20.0% |
| ! | AAACCCTTAAAGAATTTGAA+TGG | + | chr3.1:31513731-31513750 | MS.gene46980:CDS | 25.0% |
| ! | AAATGCTATGAATCAATCAT+AGG | - | chr3.1:31515750-31515769 | None:intergenic | 25.0% |
| ! | AACATTAAAAGTGAAGAAGT+AGG | - | chr3.1:31514311-31514330 | None:intergenic | 25.0% |
| ! | ATACACACCAATAATTGATA+GGG | - | chr3.1:31516292-31516311 | None:intergenic | 25.0% |
| ! | ATGAATCAATCATAGGAAAA+AGG | - | chr3.1:31515743-31515762 | None:intergenic | 25.0% |
| ! | CATAACAAGAATAACAAAGT+GGG | - | chr3.1:31513838-31513857 | None:intergenic | 25.0% |
| ! | GGTATTATTGTTCTTTAGAT+AGG | + | chr3.1:31516061-31516080 | MS.gene46980:intron | 25.0% |
| ! | GTTCAAAAGTTTACTAAAAC+TGG | - | chr3.1:31515076-31515095 | None:intergenic | 25.0% |
| ! | TCATAACAAGAATAACAAAG+TGG | - | chr3.1:31513839-31513858 | None:intergenic | 25.0% |
| ! | TGAACTAGAATATGCAAATT+TGG | - | chr3.1:31516472-31516491 | None:intergenic | 25.0% |
| ! | TGACCATTCAAATTCTTTAA+GGG | - | chr3.1:31513737-31513756 | None:intergenic | 25.0% |
| ! | TGTTAGTATTATGTTTAGAG+TGG | + | chr3.1:31516358-31516377 | MS.gene46980:intron | 25.0% |
| ! | TTGACCATTCAAATTCTTTA+AGG | - | chr3.1:31513738-31513757 | None:intergenic | 25.0% |
| !! | ATAAGTTAACACATTTTTGC+AGG | - | chr3.1:31514249-31514268 | None:intergenic | 25.0% |
| !! | ATTCATTGTGAGAAATTTTG+GGG | - | chr3.1:31516447-31516466 | None:intergenic | 25.0% |
| !! | ATTCTTGTTATGAATACGAA+TGG | + | chr3.1:31513846-31513865 | MS.gene46980:CDS | 25.0% |
| !! | CAATTCATTGTGAGAAATTT+TGG | - | chr3.1:31516449-31516468 | None:intergenic | 25.0% |
| !! | GTTAGTATTATGTTTAGAGT+GGG | + | chr3.1:31516359-31516378 | MS.gene46980:intron | 25.0% |
| !! | TTAGTATTATGTTTAGAGTG+GGG | + | chr3.1:31516360-31516379 | MS.gene46980:intron | 25.0% |
| !! | TTCCATTTTCTCATTATTAC+CGG | + | chr3.1:31515359-31515378 | MS.gene46980:intron | 25.0% |
| !!! | AAATGACACTCATTTTGAAA+TGG | - | chr3.1:31516203-31516222 | None:intergenic | 25.0% |
| !!! | ATAAAATACTAGCATTGACA+TGG | - | chr3.1:31515400-31515419 | None:intergenic | 25.0% |
| !!! | GCATATTCTAGTTCATTTAA+TGG | + | chr3.1:31516477-31516496 | MS.gene46980:intron | 25.0% |
| !!! | GTAATTTGTTTGTTACATTG+TGG | + | chr3.1:31515773-31515792 | MS.gene46980:intron | 25.0% |
| !!! | TTCAAAATGAGTGTCATTTA+AGG | + | chr3.1:31516204-31516223 | MS.gene46980:intron | 25.0% |
| !!! | TTCTATTGTGAGTATTTTGA+AGG | - | chr3.1:31514972-31514991 | None:intergenic | 25.0% |
| AAACCAACCCTATCAATTAT+TGG | + | chr3.1:31516282-31516301 | MS.gene46980:intron | 30.0% | |
| AAGAACAATAATACCATGAC+AGG | - | chr3.1:31516056-31516075 | None:intergenic | 30.0% | |
| ACTAGATTCAAAAGTCACAA+AGG | + | chr3.1:31513902-31513921 | MS.gene46980:CDS | 30.0% | |
| AGAACAATAATACCATGACA+GGG | - | chr3.1:31516055-31516074 | None:intergenic | 30.0% | |
| CAAACCCAAGTAAATTATCT+AGG | - | chr3.1:31515468-31515487 | None:intergenic | 30.0% | |
| GACACAGAAAAACAAAATTG+TGG | - | chr3.1:31515014-31515033 | None:intergenic | 30.0% | |
| GATACACACCAATAATTGAT+AGG | - | chr3.1:31516293-31516312 | None:intergenic | 30.0% | |
| TTAAGAAATGAGGTCAAGTA+TGG | + | chr3.1:31514056-31514075 | MS.gene46980:CDS | 30.0% | |
| TTGGCCTAGATAATTTACTT+GGG | + | chr3.1:31515461-31515480 | MS.gene46980:intron | 30.0% | |
| ! | ACTTTTGAACAAACACTTGT+AGG | + | chr3.1:31515086-31515105 | MS.gene46980:intron | 30.0% |
| ! | ATTGGCCTAGATAATTTACT+TGG | + | chr3.1:31515460-31515479 | MS.gene46980:intron | 30.0% |
| ! | ATTTTGAGCTAAGATGTAGA+CGG | + | chr3.1:31514569-31514588 | MS.gene46980:intron | 30.0% |
| ! | TCTTTTTATGGTTAGATGTC+TGG | + | chr3.1:31514707-31514726 | MS.gene46980:intron | 30.0% |
| ! | TGCTACACTACAATCATTTT+AGG | - | chr3.1:31514855-31514874 | None:intergenic | 30.0% |
| ! | TTCATTGTGAGAAATTTTGG+GGG | - | chr3.1:31516446-31516465 | None:intergenic | 30.0% |
| !! | AATTTTGGGGGATAAAATGA+TGG | - | chr3.1:31516434-31516453 | None:intergenic | 30.0% |
| AAAATGGTAATAGGCTACTG+AGG | + | chr3.1:31515802-31515821 | MS.gene46980:intron | 35.0% | |
| ACAAGAATAACAAAGTGGGA+AGG | - | chr3.1:31513834-31513853 | None:intergenic | 35.0% | |
| ACACCAATAATTGATAGGGT+TGG | - | chr3.1:31516288-31516307 | None:intergenic | 35.0% | |
| AGTTGTGCATTTGTGAAATG+GGG | - | chr3.1:31514170-31514189 | None:intergenic | 35.0% | |
| ATCCACATTCATCTTGTTCA+TGG | - | chr3.1:31513984-31514003 | None:intergenic | 35.0% | |
| CAAATATGTGGTGATACTGT+TGG | + | chr3.1:31513764-31513783 | MS.gene46980:CDS | 35.0% | |
| CAACAGGAGTGATACATTAA+AGG | - | chr3.1:31515254-31515273 | None:intergenic | 35.0% | |
| CAATCATAGGAAAAAGGAGT+TGG | - | chr3.1:31515737-31515756 | None:intergenic | 35.0% | |
| CACCGGTAATAATGAGAAAA+TGG | - | chr3.1:31515364-31515383 | None:intergenic | 35.0% | |
| CAGTTGTGCATTTGTGAAAT+GGG | - | chr3.1:31514171-31514190 | None:intergenic | 35.0% | |
| GGTCAAATCTGTCAAATATG+TGG | + | chr3.1:31513752-31513771 | MS.gene46980:CDS | 35.0% | |
| GTGTAGCATATCACATTTCA+TGG | + | chr3.1:31514867-31514886 | MS.gene46980:intron | 35.0% | |
| GTTTGAACTCTTAGTGACTT+TGG | + | chr3.1:31515483-31515502 | MS.gene46980:intron | 35.0% | |
| TACATTGTGGCGTGTAAAAA+TGG | + | chr3.1:31515786-31515805 | MS.gene46980:intron | 35.0% | |
| TGAAAATCAAATGCTGAGAC+AGG | + | chr3.1:31515950-31515969 | MS.gene46980:CDS | 35.0% | |
| TGGCGTGTAAAAATGGTAAT+AGG | + | chr3.1:31515793-31515812 | MS.gene46980:intron | 35.0% | |
| TGGTCAAGGAAATAATGCTA+AGG | + | chr3.1:31514076-31514095 | MS.gene46980:CDS | 35.0% | |
| TGTCGACGATTTAAGAAATG+AGG | + | chr3.1:31514046-31514065 | MS.gene46980:CDS | 35.0% | |
| TTTAGATAGGTTACATGAGC+TGG | + | chr3.1:31516074-31516093 | MS.gene46980:intron | 35.0% | |
| ! | CAAAGGCATGTTGATGTAAT+TGG | - | chr3.1:31515994-31516013 | None:intergenic | 35.0% |
| ! | CTGAAGTGTTAGTATCACAT+GGG | - | chr3.1:31515288-31515307 | None:intergenic | 35.0% |
| ! | TCTGAAGTGTTAGTATCACA+TGG | - | chr3.1:31515289-31515308 | None:intergenic | 35.0% |
| ! | TTTTGAGCTAAGATGTAGAC+GGG | + | chr3.1:31514570-31514589 | MS.gene46980:intron | 35.0% |
| !! | GTATTTTGAAGGAACTGGAA+AGG | - | chr3.1:31514961-31514980 | None:intergenic | 35.0% |
| !! | TAGTGACTTTGGAATAATCC+AGG | + | chr3.1:31515494-31515513 | MS.gene46980:intron | 35.0% |
| !! | TGTGAGTATTTTGAAGGAAC+TGG | - | chr3.1:31514966-31514985 | None:intergenic | 35.0% |
| !! | TTGAATCTAGTCTTGCATTG+TGG | - | chr3.1:31513893-31513912 | None:intergenic | 35.0% |
| !!! | GACACTCATTTTGAAATGGA+GGG | - | chr3.1:31516199-31516218 | None:intergenic | 35.0% |
| !!! | TGACACTCATTTTGAAATGG+AGG | - | chr3.1:31516200-31516219 | None:intergenic | 35.0% |
| AAAATGATGGTATGGTGGCA+GGG | - | chr3.1:31516421-31516440 | None:intergenic | 40.0% | |
| AAGAAAGCAAACGGCTAAAG+AGG | + | chr3.1:31515675-31515694 | MS.gene46980:CDS | 40.0% | |
| AAGAGGATTACTGGTGCTTA+TGG | - | chr3.1:31515218-31515237 | None:intergenic | 40.0% | |
| AAGGAATTCTATCGGTCAAG+AGG | - | chr3.1:31515235-31515254 | None:intergenic | 40.0% | |
| AATGAGGTCAAGTATGGTCA+AGG | + | chr3.1:31514062-31514081 | MS.gene46980:CDS | 40.0% | |
| ATTATTACCGGTGTCCTGTT+AGG | + | chr3.1:31515371-31515390 | MS.gene46980:intron | 40.0% | |
| CAAACTACATCAGGTCCTTT+GGG | + | chr3.1:31514767-31514786 | MS.gene46980:CDS | 40.0% | |
| CAAGGAAATAATGCTAAGGC+AGG | + | chr3.1:31514080-31514099 | MS.gene46980:CDS | 40.0% | |
| CAATCTGTGCAAACTACATC+AGG | + | chr3.1:31514758-31514777 | MS.gene46980:CDS | 40.0% | |
| CCAGTTGTGCATTTGTGAAA+TGG | - | chr3.1:31514172-31514191 | None:intergenic | 40.0% | |
| CCATTTCACAAATGCACAAC+TGG | + | chr3.1:31514169-31514188 | MS.gene46980:CDS | 40.0% | |
| GAAAAAGGAGTTGGAGTTCA+TGG | - | chr3.1:31515728-31515747 | None:intergenic | 40.0% | |
| GAAATAATGCTAAGGCAGGA+TGG | + | chr3.1:31514084-31514103 | MS.gene46980:CDS | 40.0% | |
| GGGATAAAATGATGGTATGG+TGG | - | chr3.1:31516426-31516445 | None:intergenic | 40.0% | |
| TAAAATGATGGTATGGTGGC+AGG | - | chr3.1:31516422-31516441 | None:intergenic | 40.0% | |
| TAGCCGTTTGCTTTCTTTGT+CGG | - | chr3.1:31515672-31515691 | None:intergenic | 40.0% | |
| TATGTTGATCCAAAGCAACC+AGG | + | chr3.1:31514818-31514837 | MS.gene46980:CDS | 40.0% | |
| TCATGGCAAAATCTGATGAG+AGG | - | chr3.1:31513967-31513986 | None:intergenic | 40.0% | |
| TCTTGCATTGTGGACATGAT+TGG | - | chr3.1:31513883-31513902 | None:intergenic | 40.0% | |
| TGAGTATCAGAAGTAGCACA+TGG | - | chr3.1:31514740-31514759 | None:intergenic | 40.0% | |
| TGCCATGAACAAGATGAATG+TGG | + | chr3.1:31513979-31513998 | MS.gene46980:intron | 40.0% | |
| TGGGGGATAAAATGATGGTA+TGG | - | chr3.1:31516429-31516448 | None:intergenic | 40.0% | |
| ! | AAAGGCATACTTGAGTGACT+TGG | + | chr3.1:31515860-31515879 | MS.gene46980:CDS | 40.0% |
| ! | ACACAATGATGACGAGACAA+AGG | - | chr3.1:31516011-31516030 | None:intergenic | 40.0% |
| ! | ACATTTTCGGATTGACCCAA+AGG | - | chr3.1:31514785-31514804 | None:intergenic | 40.0% |
| ! | CTTCAGATTGAAAGCATGTC+CGG | + | chr3.1:31515302-31515321 | MS.gene46980:intron | 40.0% |
| ! | GCTCTGAATTCTTCTTCTCT+AGG | - | chr3.1:31515902-31515921 | None:intergenic | 40.0% |
| ! | TGGTTGCTTTGGATCAACAT+AGG | - | chr3.1:31514819-31514838 | None:intergenic | 40.0% |
| ! | TTTTAGGCTAACTCTGTACC+TGG | - | chr3.1:31514839-31514858 | None:intergenic | 40.0% |
| !! | AAGGTTAGCTTGTGATCACA+TGG | + | chr3.1:31513921-31513940 | MS.gene46980:intron | 40.0% |
| !! | ATCAGAAGAGTGCCAGATAT+GGG | + | chr3.1:31515536-31515555 | MS.gene46980:CDS | 40.0% |
| AAATGATGGTATGGTGGCAG+GGG | - | chr3.1:31516420-31516439 | None:intergenic | 45.0% | |
| AACTCTGTACCTGGTTGCTT+TGG | - | chr3.1:31514830-31514849 | None:intergenic | 45.0% | |
| ACTGTTGGATTAACAGCCAC+CGG | + | chr3.1:31513779-31513798 | MS.gene46980:CDS | 45.0% | |
| AGGGGTGGAAGAGTAAAGTA+AGG | - | chr3.1:31516402-31516421 | None:intergenic | 45.0% | |
| AGTTTCAGCTCAGCAAGCAA+GGG | + | chr3.1:31515830-31515849 | MS.gene46980:CDS | 45.0% | |
| ATGGGTGAGTACTACACAAC+AGG | - | chr3.1:31515270-31515289 | None:intergenic | 45.0% | |
| CAGCCGACAAAGAAAGCAAA+CGG | + | chr3.1:31515666-31515685 | MS.gene46980:CDS | 45.0% | |
| CATGTCCAGAAGATGAAGAG+AGG | - | chr3.1:31514130-31514149 | None:intergenic | 45.0% | |
| CATTGACATGGACACCTAAC+AGG | - | chr3.1:31515388-31515407 | None:intergenic | 45.0% | |
| CTATCGGTCAAGAGGATTAC+TGG | - | chr3.1:31515227-31515246 | None:intergenic | 45.0% | |
| GCAAACTACATCAGGTCCTT+TGG | + | chr3.1:31514766-31514785 | MS.gene46980:CDS | 45.0% | |
| GGTGGAAGAGTAAAGTAAGG+AGG | - | chr3.1:31516399-31516418 | None:intergenic | 45.0% | |
| TCAGATGATCCTCGAGTGAA+AGG | + | chr3.1:31514005-31514024 | MS.gene46980:intron | 45.0% | |
| TGAAGAACACAACAGCTAGC+AGG | + | chr3.1:31516525-31516544 | MS.gene46980:CDS | 45.0% | |
| TTTACGAGAGGCTGATGTTC+CGG | - | chr3.1:31515573-31515592 | None:intergenic | 45.0% | |
| ! | GGCACGTGAGTGAACATTTT+CGG | - | chr3.1:31514798-31514817 | None:intergenic | 45.0% |
| ! | GTTTGCTTTCTTTGTCGGCT+GGG | - | chr3.1:31515667-31515686 | None:intergenic | 45.0% |
| ! | TCTGTAAAGCATCCCTGTCA+TGG | + | chr3.1:31516040-31516059 | MS.gene46980:intron | 45.0% |
| !! | GATCAGAAGAGTGCCAGATA+TGG | + | chr3.1:31515535-31515554 | MS.gene46980:CDS | 45.0% |
| !! | GCGAGTTTCTGAAATAGTCG+AGG | - | chr3.1:31515182-31515201 | None:intergenic | 45.0% |
| AAAGTGGGAAGGAACACTCG+TGG | - | chr3.1:31513823-31513842 | None:intergenic | 50.0% | |
| AACACAACAGCTAGCAGGAG+AGG | + | chr3.1:31516530-31516549 | MS.gene46980:CDS | 50.0% | |
| ATGCTAAGGCAGGATGGCAA+TGG | + | chr3.1:31514090-31514109 | MS.gene46980:CDS | 50.0% | |
| ATGGACACCTAACAGGACAC+CGG | - | chr3.1:31515381-31515400 | None:intergenic | 50.0% | |
| CGTTTGCTTTCTTTGTCGGC+TGG | - | chr3.1:31515668-31515687 | None:intergenic | 50.0% | |
| GAGTTTCAGCTCAGCAAGCA+AGG | + | chr3.1:31515829-31515848 | MS.gene46980:CDS | 50.0% | |
| GATATGGGAGGTGAATCTGC+CGG | + | chr3.1:31515551-31515570 | MS.gene46980:CDS | 50.0% | |
| GATGATCCTCGAGTGAAAGG+AGG | + | chr3.1:31514008-31514027 | MS.gene46980:intron | 50.0% | |
| GCAAGCAACAAAGACTTCGC+CGG | - | chr3.1:31513801-31513820 | None:intergenic | 50.0% | |
| GCAAGCAAGGGAGAGGAAAA+AGG | + | chr3.1:31515842-31515861 | MS.gene46980:CDS | 50.0% | |
| GCAGATTCACCTCCCATATC+TGG | - | chr3.1:31515551-31515570 | None:intergenic | 50.0% | |
| GCTGACCTCTCTTCATCTTC+TGG | + | chr3.1:31514122-31514141 | MS.gene46980:CDS | 50.0% | |
| GGAACATCAGCCTCTCGTAA+AGG | + | chr3.1:31515572-31515591 | MS.gene46980:CDS | 50.0% | |
| GGAGAGGGTCAAAAGAAGAG+AGG | + | chr3.1:31515635-31515654 | MS.gene46980:CDS | 50.0% | |
| TCATCACCTCCTTTCACTCG+AGG | - | chr3.1:31514017-31514036 | None:intergenic | 50.0% | |
| TGAACCAGTGCCTTTACGAG+AGG | - | chr3.1:31515585-31515604 | None:intergenic | 50.0% | |
| TGCTAAGGCAGGATGGCAAT+GGG | + | chr3.1:31514091-31514110 | MS.gene46980:CDS | 50.0% | |
| ! | CACGTGTCATTGTCAGACAC+CGG | - | chr3.1:31515324-31515343 | None:intergenic | 50.0% |
| !! | AAAGGCACTGGTTCAACTGC+TGG | + | chr3.1:31515590-31515609 | MS.gene46980:CDS | 50.0% |
| !! | AGAAGAGTGCCAGATATGGG+AGG | + | chr3.1:31515539-31515558 | MS.gene46980:CDS | 50.0% |
| AGCAACAAAGACTTCGCCGG+TGG | - | chr3.1:31513798-31513817 | None:intergenic | 55.0% | |
| AGCAGGAGAGGAAGCAATGG+TGG | + | chr3.1:31516542-31516561 | MS.gene46980:CDS | 55.0% | |
| GCTAGCAGGAGAGGAAGCAA+TGG | + | chr3.1:31516539-31516558 | MS.gene46980:CDS | 55.0% | |
| GCTGGTCCAGAACGTGTTCA+GGG | + | chr3.1:31515608-31515627 | MS.gene46980:CDS | 55.0% | |
| TCCAGGTCTTGAGAGTGACG+AGG | + | chr3.1:31515511-31515530 | MS.gene46980:intron | 55.0% | |
| TCCTCGTCACTCTCAAGACC+TGG | - | chr3.1:31515515-31515534 | None:intergenic | 55.0% | |
| TGCTGGTCCAGAACGTGTTC+AGG | + | chr3.1:31515607-31515626 | MS.gene46980:CDS | 55.0% | |
| ! | TCAGCCTCTCGTAAAGGCAC+TGG | + | chr3.1:31515578-31515597 | MS.gene46980:CDS | 55.0% |
| CAGCTCAGCAAGCAAGGGAG+AGG | + | chr3.1:31515835-31515854 | MS.gene46980:CDS | 60.0% | |
| CCAGAACGTGTTCAGGGTGC+TGG | + | chr3.1:31515614-31515633 | MS.gene46980:CDS | 60.0% | |
| CCAGCACCCTGAACACGTTC+TGG | - | chr3.1:31515617-31515636 | None:intergenic | 60.0% | |
| TGATGGTATGGTGGCAGGGG+TGG | - | chr3.1:31516417-31516436 | None:intergenic | 60.0% | |
| !! | ACGTGTTCAGGGTGCTGGAG+AGG | + | chr3.1:31515619-31515638 | MS.gene46980:CDS | 60.0% |
| !! | CGTGTTCAGGGTGCTGGAGA+GGG | + | chr3.1:31515620-31515639 | MS.gene46980:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 31513722 | 31516583 | 31513722 | ID=MS.gene46980 |
| chr3.1 | mRNA | 31513722 | 31516583 | 31513722 | ID=MS.gene46980.t1;Parent=MS.gene46980 |
| chr3.1 | exon | 31513722 | 31513923 | 31513722 | ID=MS.gene46980.t1.exon1;Parent=MS.gene46980.t1 |
| chr3.1 | CDS | 31513722 | 31513923 | 31513722 | ID=cds.MS.gene46980.t1;Parent=MS.gene46980.t1 |
| chr3.1 | exon | 31514009 | 31514190 | 31514009 | ID=MS.gene46980.t1.exon2;Parent=MS.gene46980.t1 |
| chr3.1 | CDS | 31514009 | 31514190 | 31514009 | ID=cds.MS.gene46980.t1;Parent=MS.gene46980.t1 |
| chr3.1 | exon | 31514722 | 31514839 | 31514722 | ID=MS.gene46980.t1.exon3;Parent=MS.gene46980.t1 |
| chr3.1 | CDS | 31514722 | 31514839 | 31514722 | ID=cds.MS.gene46980.t1;Parent=MS.gene46980.t1 |
| chr3.1 | exon | 31515516 | 31515696 | 31515516 | ID=MS.gene46980.t1.exon4;Parent=MS.gene46980.t1 |
| chr3.1 | CDS | 31515516 | 31515696 | 31515516 | ID=cds.MS.gene46980.t1;Parent=MS.gene46980.t1 |
| chr3.1 | exon | 31515815 | 31515971 | 31515815 | ID=MS.gene46980.t1.exon5;Parent=MS.gene46980.t1 |
| chr3.1 | CDS | 31515815 | 31515971 | 31515815 | ID=cds.MS.gene46980.t1;Parent=MS.gene46980.t1 |
| chr3.1 | exon | 31516521 | 31516583 | 31516521 | ID=MS.gene46980.t1.exon6;Parent=MS.gene46980.t1 |
| chr3.1 | CDS | 31516521 | 31516583 | 31516521 | ID=cds.MS.gene46980.t1;Parent=MS.gene46980.t1 |
| Gene Sequence |
| Protein sequence |
