AlfalfaGEDB | MS.gene47034

M. sativa cultivar XinJiangDaYe / MS.gene47034

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47034.t1	XP_013442172.1	93.1	72	5	0	21	92	651	722	1.30E-30	142.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47034.t1	O64477	70.8	72	21	0	21	92	652	723	8.7e-23	107.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47034.t1	A0A072TFN9	93.1	72	5	0	21	92	651	722	9.5e-31	142.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47034.t1	MTR_0280s0040	93.056	72	5	0	21	92	651	722	1.72e-41	144
MS.gene47034.t1	MTR_2g089360	81.944	72	13	0	21	92	653	724	3.57e-35	126
MS.gene47034.t1	MTR_2g089440	66.667	72	24	0	21	92	426	497	7.27e-29	108
MS.gene47034.t1	MTR_2g089440	66.667	72	24	0	21	92	658	729	1.47e-28	107
MS.gene47034.t1	MTR_5g088435	93.478	46	2	1	24	68	1	46	2.59e-24	87.0
MS.gene47034.t1	MTR_1g012550	51.515	66	32	0	21	86	659	724	3.62e-20	83.6
MS.gene47034.t1	MTR_2g073250	53.030	66	31	0	21	86	643	708	1.52e-19	82.0
MS.gene47034.t1	MTR_6g043510	56.061	66	29	0	21	86	648	713	3.11e-19	81.3
MS.gene47034.t1	MTR_2g080080	51.515	66	32	0	21	86	639	704	5.66e-19	80.5
MS.gene47034.t1	MTR_3g107070	48.485	66	34	0	21	86	631	696	6.82e-19	80.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47034.t1	AT2G19130	70.833	72	21	0	21	92	652	723	1.56e-29	110
MS.gene47034.t1	AT4G32300	53.030	66	31	0	21	86	651	716	6.22e-20	83.2
MS.gene47034.t1	AT5G24080	50.685	73	36	0	21	93	562	634	1.02e-18	79.7
MS.gene47034.t1	AT5G24080	50.685	73	36	0	21	93	562	634	1.02e-18	79.7
MS.gene47034.t1	AT5G24080	50.685	73	36	0	21	93	689	761	1.21e-18	79.3
MS.gene47034.t1	AT1G34300	51.515	66	32	0	21	86	642	707	1.58e-17	76.3
MS.gene47034.t1	AT4G00340	48.649	74	30	1	21	86	639	712	5.73e-16	72.0
MS.gene47034.t1	AT4G00340	48.649	74	30	1	21	86	618	691	5.95e-16	71.6
MS.gene47034.t1	AT5G35370	69.767	43	13	0	21	63	672	714	9.63e-16	71.2
MS.gene47034.t1	AT5G20050	58.140	43	18	0	21	63	269	311	1.33e-12	62.4

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Find 31 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCGATGTTTACAACTA+CGG	0.603994	5.1:+69763122	MS.gene47034:CDS
AACTCCGATCCTTCCGAAGA+TGG	0.489207	5.1:+69763179	MS.gene47034:CDS
AAGTAGGAAAGAATCTAACA+TGG	0.696541	5.1:-69763202	None:intergenic
ACTCCCTTGAGAGGAACAAG+AGG	0.658194	5.1:+69763056	MS.gene47034:CDS
ACTGAGTTTGCAGCCAAAGT+AGG	0.545150	5.1:-69763218	None:intergenic
ATAGCCTCTTGTTCCTCTCA+AGG	0.543969	5.1:-69763060	None:intergenic
ATGGCCATCTTCGGAAGGAT+CGG	0.548369	5.1:-69763183	None:intergenic
CAAACTCAGTACACCAAGGT+GGG	0.634731	5.1:+69763231	MS.gene47034:CDS
CATTCCGTAGTTGTAAACAT+CGG	0.636880	5.1:-69763126	None:intergenic
CCCTTCCGACAAGCTTTGCT+AGG	0.551605	5.1:-69763014	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTAGGAAAGAATCTAACA+TGG	-	chr5.1:69763205-69763224	None:intergenic	30.0%
TGTTAGATTCTTTCCTACTT+TGG	+	chr5.1:69763205-69763224	MS.gene47034:CDS	30.0%
AAAGCCGATGTTTACAACTA+CGG	+	chr5.1:69763122-69763141	MS.gene47034:CDS	35.0%
CATTCCGTAGTTGTAAACAT+CGG	-	chr5.1:69763129-69763148	None:intergenic	35.0%
GAATCTAACATGGCCATCTT+CGG	-	chr5.1:69763195-69763214	None:intergenic	40.0%
ACTGAGTTTGCAGCCAAAGT+AGG	-	chr5.1:69763221-69763240	None:intergenic	45.0%
ATAGCCTCTTGTTCCTCTCA+AGG	-	chr5.1:69763063-69763082	None:intergenic	45.0%
CAAACTCAGTACACCAAGGT+GGG	+	chr5.1:69763231-69763250	MS.gene47034:CDS	45.0%
GAAACTCCTGAAATCCACTC+TGG	-	chr5.1:69763092-69763111	None:intergenic	45.0%
TAGCCTCTTGTTCCTCTCAA+GGG	-	chr5.1:69763062-69763081	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	69762924	69763283	69762924	ID=MS.gene47034
chr5.1	mRNA	69762924	69763283	69762924	ID=MS.gene47034.t1;Parent=MS.gene47034
chr5.1	exon	69762924	69762937	69762924	ID=MS.gene47034.t1.exon1;Parent=MS.gene47034.t1
chr5.1	CDS	69762924	69762937	69762924	ID=cds.MS.gene47034.t1;Parent=MS.gene47034.t1
chr5.1	exon	69763007	69763283	69763007	ID=MS.gene47034.t1.exon2;Parent=MS.gene47034.t1
chr5.1	CDS	69763007	69763283	69763007	ID=cds.MS.gene47034.t1;Parent=MS.gene47034.t1

Gene Sequence	>MS.gene47034 ATGAAAAGTGTAGAGTCTGTACCATTCCTACGTGAGGCCAGAAAACATTCTCATAGATTCTGATTTTTGTCCAAAGGTTGCAGACTTCAGCCTAGCAAAGCTTGTCGGAAGGGACTTCTGCCGGGTCCCCTCACTCCCTTGAGAGGAACAAGAGGCTATCTAGCTCCAGAGTGGATTTCAGGAGTTTCTATAACCGCTAAAGCCGATGTTTACAACTACGGAATGATGCTTTTCGAGCTCGTGTCAGGAAGAAGAAACTCCGATCCTTCCGAAGATGGCCATGTTAGATTCTTTCCTACTTTGGCTGCAAACTCAGTACACCAAGGTGGGAATGTGATTAGCCTTAATAATGTCACATGA
Protein sequence	>MS.gene47034.t1 MKSVELQPSKACRKGLLPGPLTPLRGTRGYLAPEWISGVSITAKADVYNYGMMLFELVSGRRNSDPSEDGHVRFFPTLAANSVHQGGNVISLNNVT