AlfalfaGEDB | MS.gene47182

M. sativa cultivar XinJiangDaYe / MS.gene47182

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47182.t1	XP_003611353.1	94.3	803	45	1	1	802	1	803	0.00E+00	1554.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47182.t1	Q39202	44.1	832	409	21	3	799	5	815	5.0e-180	632.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47182.t1	G7JXF4	94.3	803	45	1	1	802	1	803	0.0e+00	1554.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47182.t1	MTR_5g013070	94.271	803	45	1	1	802	1	803	0.0	1578
MS.gene47182.t1	MTR_5g013130	83.209	804	128	4	1	802	2	800	0.0	1380
MS.gene47182.t1	MTR_2g067980	46.847	777	376	14	40	801	276	1030	0.0	684
MS.gene47182.t1	MTR_8g011370	46.231	796	381	20	32	800	36	811	0.0	674
MS.gene47182.t1	MTR_2g067990	45.722	783	385	16	32	798	245	1003	0.0	665
MS.gene47182.t1	MTR_8g011410	44.981	787	384	18	32	789	36	802	0.0	645
MS.gene47182.t1	MTR_2g068650	43.257	786	345	17	32	798	38	741	0.0	611
MS.gene47182.t1	MTR_8g011440	41.717	827	415	22	10	797	26	824	0.0	578
MS.gene47182.t1	MTR_8g011440	38.005	371	202	12	34	396	824	1174	1.85e-66	240
MS.gene47182.t1	MTR_4g114270	37.834	785	431	19	40	797	53	807	8.93e-163	493

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47182.t1	AT5G24080	31.846	807	468	24	37	795	42	814	2.74e-105	344
MS.gene47182.t1	AT1G34300	31.946	817	456	30	20	801	23	774	7.18e-103	336
MS.gene47182.t1	AT5G24080	32.394	710	417	20	126	795	1	687	1.83e-93	309
MS.gene47182.t1	AT5G24080	32.394	710	417	20	126	795	1	687	1.83e-93	309
MS.gene47182.t1	AT2G19130	32.419	802	445	33	41	801	39	784	4.56e-92	307
MS.gene47182.t1	AT4G00340	31.338	785	429	27	37	785	30	740	4.30e-91	304
MS.gene47182.t1	AT4G00340	31.187	792	442	29	37	785	30	761	7.91e-91	304
MS.gene47182.t1	AT5G35370	29.111	821	443	29	44	792	59	812	8.18e-84	286
MS.gene47182.t1	AT4G21390	30.221	814	473	27	36	794	40	813	3.70e-80	275
MS.gene47182.t1	AT4G32300	45.485	299	152	5	501	794	483	775	6.82e-76	263

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Find 166 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCACCTCTAGTTAA+TGG	0.231262	6.3:+17412070	MS.gene47182:CDS
AAAGAATGGAAATTATGTAA+AGG	0.503583	6.3:-17410854	None:intergenic
AAAGGATTGGATTTGCTTTG+GGG	0.544509	6.3:+17412662	MS.gene47182:CDS
AAAGTGGATGTTTACAGCTT+TGG	0.374429	6.3:+17412910	MS.gene47182:CDS
AAAGTTTCCATTATCAAGCA+TGG	0.505441	6.3:-17411210	None:intergenic
AACAAGGATGGACTAGTATG+AGG	0.547394	6.3:+17411675	MS.gene47182:CDS
AACCTCGTACTAGCACCAAC+AGG	0.509463	6.3:+17411089	MS.gene47182:CDS
AAGAATGGAAATTATGTAAA+GGG	0.432434	6.3:-17410853	None:intergenic
AAGACAAGAGTTTCTCCTCT+TGG	0.439949	6.3:+17412127	MS.gene47182:CDS
AAGACTGAGTTGCTAGCCAT+TGG	0.483158	6.3:+17412502	MS.gene47182:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGATCACCTCTAGTTAA+TGG	+	chr6.3:17412070-17412089	MS.gene47182:CDS	30.0%
AAAGTTTCCATTATCAAGCA+TGG	-	chr6.3:17411213-17411232	None:intergenic	30.0%
AATCAAACTGAAGGAAAAAG+GGG	-	chr6.3:17413220-17413239	None:intergenic	30.0%
AGAGCAACACTTGATTATTA+TGG	+	chr6.3:17411611-17411630	MS.gene47182:CDS	30.0%
AGTGGATAAAGATAGCAATT+TGG	+	chr6.3:17413106-17413125	MS.gene47182:CDS	30.0%
ATATTCAATGAAATGGGAAG+TGG	+	chr6.3:17411725-17411744	MS.gene47182:CDS	30.0%
CACTGCTATATTCAATGAAA+TGG	+	chr6.3:17411718-17411737	MS.gene47182:CDS	30.0%
CCAAACGATATTATTTCCTA+TGG	+	chr6.3:17411185-17411204	MS.gene47182:CDS	30.0%
CCATAGGAAATAATATCGTT+TGG	-	chr6.3:17411188-17411207	None:intergenic	30.0%
CTATAATAGCTATTGTTCCA+TGG	+	chr6.3:17411757-17411776	MS.gene47182:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	17410837	17413245	17410837	ID=MS.gene47182
chr6.3	mRNA	17410837	17413245	17410837	ID=MS.gene47182.t1;Parent=MS.gene47182
chr6.3	exon	17410837	17413245	17410837	ID=MS.gene47182.t1.exon1;Parent=MS.gene47182.t1
chr6.3	CDS	17410837	17413245	17410837	ID=cds.MS.gene47182.t1;Parent=MS.gene47182.t1

Gene Sequence

>MS.gene47182

ATGGCTTCTTCCTCTACCCTTTACATAATTTCCATTCTTTTTCTTCAACTTGTGTTAGCCTTTGGAAACGTTTCTCCAAGTTCAAGACTCTCCACCACTAACAACAACAACAATCCATGGTTATCACCTTCTGGTGAATTCGCTTTCGGATTCCGTAATACCACAACAAACTTCTTCATGCTTGCAATATGGTACAACAACATACATGATCAAACCATTGTTTGGAGCGCCAAAGACATGAACAACATCAACAACCTCGTACTAGCACCAACAGGATCACATGTTCAGCTAACATCAGGTGGACTCACGTTGACAACTGCACAAAATGAATCCATTTGGACAGCACAACCAAACGATATTATTTCCTATGGAACCATGCTTGATAATGGAAACTTTGTTCTTGTAAACAACAAATCTGTTATTGTTTGGGAAAGTTTTAACTTTCCTACTGACACCCTTTTGCCTAATCAATCGCTTGAGTTAGGCGCCACCTTAACTTCAAGATTCTCAGAGACCAATTTCACAAATGGAAGGTTCCAACTTTATTTTAATGATGATGGTCATAATCTCATGTTAAGTCCACTTGCATGGCCTACTCAATTTCGTTACAAATTTTACTATAGTATTGGTGTTAATAACTCTGCATCTTCAAGTTTAGTTTTTGATGAATCAGGAGATATTTATGTAGAAACAAATAATGATGGTACTGCTAGAATCAAACCTCAGGGTACACAATGGAAAAATTTAATTCTTGATCCAAAGTTGTATTATTATAGAGCAACACTTGATTATTATGGAGTTTTGACACAATATTCTCATCCAAGGGACACTAAAGCAAAACAAGGATGGACTAGTATGAGGTATGTTCCTGATAACATCTGCACTGCTATATTCAATGAAATGGGAAGTGGAACTTGTGGCTATAATAGCTATTGTTCCATGGAAAATCAGAGACCTAATTGTAGATGTCCTTATGGTTATTCATTGATAGATCCAAGTAATCAATTTGGCGGGTGTCAACTCAATTTCACACTTGGTTGTGGAGCTGATAATGGTGAAGGATTGAATGTGAAGCCAGAAGATTTATATGAGTTTACTGTTCTTACTAATGTGAATTGGCCATTAGCCGATTATGAACGGATGCAGCCTTATTCTCAACATGACTGTCAACAATCTTGTTTGCATGATTGTATGTGTTCTGTTGTTGTCTTCAGAGACCAAATATGTTGGAAGAAAAGATCACCTCTAGTTAATGGAAGAGAAGAAAGTGGTGGTGATTTAGTACTTATCAAGACAAGAGTTTCTCCTCTTGGTAAAATAGGTACTAGTCCTTCCAATAATTTGAATAAAGACAACCGAGTTAACCCGATTCTTCGAGGTCTACTAATTGGTTCAGCTGTCTTTAATAGCTTACTCTTGGCTGCAGTTGTTTTAGTGACTTTGTTGAAGCCGAAAAGGGTTGTCGTAGGCACAACTCTCTTGGAAACAAATTTATGTTCGTTTAGTTATGACGCGTTAAAAGAAGCTACAAGGGGTTTTATTGAAGAACTAGGTAGAGGTTCCTTTGGAATTGTTTTCAAAGGTGAATTGAAAGCAGCAACGTCTTGTAATGTTGTTGCTGTTAAGAAATTGGATCGGTTAGCGCAAGATCGCGAGAAGGAATTTAAGACTGAGTTGCTAGCCATTGGTAAAACCAGCCACAAAAACTTGGTCAAGTTGATTGGATATTGTGATGAGGGAATGCATAGAATGTTGGTGTATGAGTTCATGAACAATGGCAGCCTTGCAAACATTTTGTTTGGACAAACAAAACCCACTTGGAATCAAAGGATTGGATTTGCTTTGGGGATTGCAAGAGGATTGGTGTATTTACATGAAGAGTGTGACACTCCCATCATTCATTGTGACATAAAGCCTCAAAATATACTCATAGATGAGTACTTCACGGTGAAGATTTCTGACTTTGGATTGGCTAAATTGTTGTTGGCCGAACAAAGTAGAACCAAAACCATGATCCGAGGAACGCGAGGATATGTAGCTCCTGAATGGTTTAAGAATGTTCCAGTGACGGCTAAAGTGGATGTTTACAGCTTTGGTGCCATGTTGTTGGAAATTGTTTGCTGCAGAAAAAGTGTGGTGCTGATGGAGTCAGGGGAGGAAGAGAAGGCAATTTTGATAGATTGGGCTTGCGATTGTTATATGCAAGGGAGAATAGATGCTTTGGTGGAGAATGATCAAGATGCTTTGGATGACTTTGACAGGTTAGCAAAGTGGATAAAGATAGCAATTTGGTGCATTCAAGAACATCCTGAAATGAGGCCAACAATGAGGATGGTCATGCAAATGCTAGAAGGTGTGGTTCAAGTCCCTAACCCACCATCCCCTTTTTCCTTCAGTTTGATTCCTTGA

Protein sequence

>MS.gene47182.t1

MASSSTLYIISILFLQLVLAFGNVSPSSRLSTTNNNNNPWLSPSGEFAFGFRNTTTNFFMLAIWYNNIHDQTIVWSAKDMNNINNLVLAPTGSHVQLTSGGLTLTTAQNESIWTAQPNDIISYGTMLDNGNFVLVNNKSVIVWESFNFPTDTLLPNQSLELGATLTSRFSETNFTNGRFQLYFNDDGHNLMLSPLAWPTQFRYKFYYSIGVNNSASSSLVFDESGDIYVETNNDGTARIKPQGTQWKNLILDPKLYYYRATLDYYGVLTQYSHPRDTKAKQGWTSMRYVPDNICTAIFNEMGSGTCGYNSYCSMENQRPNCRCPYGYSLIDPSNQFGGCQLNFTLGCGADNGEGLNVKPEDLYEFTVLTNVNWPLADYERMQPYSQHDCQQSCLHDCMCSVVVFRDQICWKKRSPLVNGREESGGDLVLIKTRVSPLGKIGTSPSNNLNKDNRVNPILRGLLIGSAVFNSLLLAAVVLVTLLKPKRVVVGTTLLETNLCSFSYDALKEATRGFIEELGRGSFGIVFKGELKAATSCNVVAVKKLDRLAQDREKEFKTELLAIGKTSHKNLVKLIGYCDEGMHRMLVYEFMNNGSLANILFGQTKPTWNQRIGFALGIARGLVYLHEECDTPIIHCDIKPQNILIDEYFTVKISDFGLAKLLLAEQSRTKTMIRGTRGYVAPEWFKNVPVTAKVDVYSFGAMLLEIVCCRKSVVLMESGEEEKAILIDWACDCYMQGRIDALVENDQDALDDFDRLAKWIKIAIWCIQEHPEMRPTMRMVMQMLEGVVQVPNPPSPFSFSLIP