Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47268.t1 | XP_013451508.1 | 85.7 | 300 | 5 | 1 | 1 | 262 | 1 | 300 | 2.70E-78 | 302 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47268.t1 | Q6X7J3 | 57.9 | 252 | 75 | 4 | 27 | 259 | 28 | 267 | 4.4e-45 | 183.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47268.t1 | A0A072U832 | 85.7 | 300 | 5 | 1 | 1 | 262 | 1 | 300 | 2.0e-78 | 302.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene47268.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47268.t1 | MTR_6g027390 | 85.667 | 300 | 5 | 2 | 1 | 262 | 1 | 300 | 0.0 | 511 |
| MS.gene47268.t1 | MTR_7g086940 | 50.530 | 283 | 108 | 8 | 1 | 262 | 1 | 272 | 1.18e-73 | 226 |
| MS.gene47268.t1 | MTR_2g015000 | 62.500 | 72 | 27 | 0 | 24 | 95 | 47 | 118 | 2.45e-27 | 109 |
| MS.gene47268.t1 | MTR_7g025010 | 62.857 | 70 | 26 | 0 | 24 | 93 | 39 | 108 | 4.82e-27 | 109 |
| MS.gene47268.t1 | MTR_4g088080 | 55.556 | 81 | 33 | 1 | 12 | 89 | 17 | 97 | 3.66e-23 | 96.7 |
| MS.gene47268.t1 | MTR_4g088070 | 61.905 | 63 | 24 | 0 | 30 | 92 | 27 | 89 | 4.53e-23 | 97.4 |
| MS.gene47268.t1 | MTR_8g107210 | 43.333 | 90 | 50 | 1 | 11 | 99 | 75 | 164 | 3.19e-17 | 80.5 |
| MS.gene47268.t1 | MTR_4g084550 | 36.264 | 91 | 50 | 2 | 7 | 96 | 45 | 128 | 8.79e-16 | 73.6 |
| MS.gene47268.t1 | MTR_1g115315 | 46.875 | 64 | 34 | 0 | 28 | 91 | 81 | 144 | 4.94e-14 | 70.5 |
| MS.gene47268.t1 | MTR_1g115315 | 46.875 | 64 | 34 | 0 | 28 | 91 | 81 | 144 | 9.90e-14 | 69.7 |
| MS.gene47268.t1 | MTR_3g115620 | 45.070 | 71 | 39 | 0 | 28 | 98 | 78 | 148 | 1.92e-13 | 67.8 |
| MS.gene47268.t1 | MTR_5g081990 | 34.524 | 84 | 55 | 0 | 12 | 95 | 13 | 96 | 2.49e-12 | 64.3 |
| MS.gene47268.t1 | MTR_4g063735 | 40.299 | 67 | 40 | 0 | 32 | 98 | 25 | 91 | 3.63e-12 | 65.1 |
| MS.gene47268.t1 | MTR_5g021930 | 40.625 | 64 | 37 | 1 | 31 | 93 | 29 | 92 | 5.25e-12 | 65.1 |
| MS.gene47268.t1 | MTR_7g060630 | 40.625 | 64 | 38 | 0 | 31 | 94 | 7 | 70 | 7.99e-12 | 63.2 |
| MS.gene47268.t1 | MTR_1g019130 | 42.188 | 64 | 37 | 0 | 31 | 94 | 89 | 152 | 4.44e-11 | 61.6 |
| MS.gene47268.t1 | MTR_7g023810 | 41.538 | 65 | 38 | 0 | 29 | 93 | 65 | 129 | 5.61e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47268.t1 | AT5G17810 | 49.821 | 279 | 94 | 7 | 13 | 259 | 3 | 267 | 1.06e-72 | 223 |
| MS.gene47268.t1 | AT5G17810 | 49.821 | 279 | 94 | 7 | 13 | 259 | 3 | 267 | 1.06e-72 | 223 |
| MS.gene47268.t1 | AT5G17810 | 49.821 | 279 | 93 | 7 | 13 | 259 | 3 | 266 | 1.53e-72 | 223 |
| MS.gene47268.t1 | AT3G03660 | 54.122 | 279 | 93 | 6 | 3 | 259 | 2 | 267 | 1.74e-72 | 223 |
| MS.gene47268.t1 | AT3G03660 | 54.348 | 276 | 91 | 6 | 3 | 256 | 2 | 264 | 1.35e-70 | 219 |
| MS.gene47268.t1 | AT3G03660 | 49.026 | 308 | 93 | 8 | 3 | 259 | 2 | 296 | 9.41e-67 | 209 |
| MS.gene47268.t1 | AT3G03660 | 49.180 | 305 | 91 | 8 | 3 | 256 | 2 | 293 | 5.80e-65 | 206 |
| MS.gene47268.t1 | AT2G33880 | 62.162 | 74 | 28 | 0 | 23 | 96 | 46 | 119 | 1.40e-27 | 109 |
| MS.gene47268.t1 | AT2G33880 | 62.162 | 74 | 28 | 0 | 23 | 96 | 46 | 119 | 1.64e-27 | 109 |
| MS.gene47268.t1 | AT5G45980 | 57.534 | 73 | 31 | 0 | 30 | 102 | 53 | 125 | 1.02e-25 | 103 |
| MS.gene47268.t1 | AT4G35550 | 47.692 | 65 | 34 | 0 | 28 | 92 | 95 | 159 | 2.30e-14 | 71.6 |
| MS.gene47268.t1 | AT3G18010 | 40.000 | 80 | 47 | 1 | 29 | 107 | 73 | 152 | 4.84e-14 | 71.2 |
| MS.gene47268.t1 | AT5G59340 | 39.706 | 68 | 41 | 0 | 31 | 98 | 13 | 80 | 5.48e-13 | 67.4 |
| MS.gene47268.t1 | AT1G20700 | 42.254 | 71 | 41 | 0 | 28 | 98 | 29 | 99 | 1.21e-12 | 64.3 |
| MS.gene47268.t1 | AT1G20700 | 42.254 | 71 | 41 | 0 | 28 | 98 | 91 | 161 | 2.54e-12 | 64.7 |
| MS.gene47268.t1 | AT1G20700 | 42.254 | 71 | 41 | 0 | 28 | 98 | 91 | 161 | 3.04e-12 | 64.3 |
| MS.gene47268.t1 | AT2G28610 | 38.889 | 72 | 44 | 0 | 26 | 97 | 2 | 73 | 3.05e-12 | 65.1 |
| MS.gene47268.t1 | AT2G17950 | 42.188 | 64 | 36 | 1 | 31 | 93 | 37 | 100 | 4.11e-12 | 65.5 |
| MS.gene47268.t1 | AT3G11260 | 39.062 | 64 | 39 | 0 | 32 | 95 | 24 | 87 | 6.97e-12 | 63.2 |
| MS.gene47268.t1 | AT1G46480 | 42.188 | 64 | 37 | 0 | 31 | 94 | 89 | 152 | 1.19e-11 | 62.4 |
| MS.gene47268.t1 | AT5G05770 | 37.500 | 64 | 40 | 0 | 32 | 95 | 29 | 92 | 5.12e-11 | 59.3 |
| MS.gene47268.t1 | AT1G46480 | 42.188 | 64 | 37 | 0 | 31 | 94 | 89 | 152 | 5.61e-11 | 61.6 |
Find 51 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAACTTCTTGAGAAATT+TGG | 0.100600 | 6.3:-18864884 | MS.gene47268:CDS |
| ATTCTCACGGTTTCATCTTT+TGG | 0.207436 | 6.3:+18864908 | None:intergenic |
| GACCATTCCACTATTGAAAA+TGG | 0.216187 | 6.3:+18864937 | None:intergenic |
| ATAAGGATTTGTTCAGGTTT+TGG | 0.291953 | 6.3:+18864968 | None:intergenic |
| TGAAAATGGATTCAAGTATA+AGG | 0.302638 | 6.3:+18864951 | None:intergenic |
| CTTGGTGCTGCACTTGGTCT+TGG | 0.327659 | 6.3:-18864701 | MS.gene47268:CDS |
| CTGCACTGGTATTGGTGATA+TGG | 0.337777 | 6.3:+18864746 | None:intergenic |
| CTGTCTCTTGGTGCTGCACT+TGG | 0.345570 | 6.3:-18864707 | MS.gene47268:CDS |
| GTAATATTGGTTCATTCCTC+TGG | 0.359362 | 6.3:-18862809 | MS.gene47268:CDS |
| TCAGTTCCAACCAATGAGTT+TGG | 0.369989 | 6.3:-18862782 | MS.gene47268:CDS |
| GTTTGGTGAAGATGTAATAT+TGG | 0.373946 | 6.3:-18862822 | MS.gene47268:CDS |
| TCAAATCAATTTGCCTCAAA+TGG | 0.378394 | 6.3:-18864492 | MS.gene47268:CDS |
| TGTTGGTGCTGCACTGGTAT+TGG | 0.396373 | 6.3:+18864738 | None:intergenic |
| TCAAGTATAAGGATTTGTTC+AGG | 0.405750 | 6.3:+18864962 | None:intergenic |
| CAGTACTGCCACCGCTTAGT+TGG | 0.406811 | 6.3:+18864774 | None:intergenic |
| GTACCCCTTGGCATTTCTGT+TGG | 0.414376 | 6.3:+18862866 | None:intergenic |
| AGTACTGCCACCGCTTAGTT+GGG | 0.417375 | 6.3:+18864775 | None:intergenic |
| GCATGGTGAAAGCTACTATC+TGG | 0.420994 | 6.3:-18862738 | MS.gene47268:intron |
| CTTGAGAAATTTGGAGCTGT+TGG | 0.435040 | 6.3:-18864875 | MS.gene47268:CDS |
| GGTGCTGCACTTGGTCTTGG+TGG | 0.436302 | 6.3:-18864698 | MS.gene47268:CDS |
| ATTGACATGAAAACAATGTT+TGG | 0.438397 | 6.3:-18862839 | MS.gene47268:CDS |
| GTTGTTTGGATTATTAGTAT+TGG | 0.444337 | 6.3:+18865027 | None:intergenic |
| CATCTGCCTCTGACGGCGTC+GGG | 0.463584 | 6.3:+18864808 | None:intergenic |
| GCATCTGCCTCTGACGGCGT+CGG | 0.466933 | 6.3:+18864807 | None:intergenic |
| GCTGAAGTATTGTCCATTTG+AGG | 0.472860 | 6.3:+18864479 | None:intergenic |
| TCAAATTTCAACTATTACCC+AGG | 0.481334 | 6.3:-18864422 | MS.gene47268:intron |
| AACAGTACCTCTCTGTCTCT+TGG | 0.490108 | 6.3:-18864719 | MS.gene47268:CDS |
| CATCAAGAAACCAAACTCAT+TGG | 0.493495 | 6.3:+18862772 | None:intergenic |
| AAGAAACCAAACTCATTGGT+TGG | 0.499044 | 6.3:+18862776 | None:intergenic |
| GTGATCACAGTGTTTATCAA+TGG | 0.505244 | 6.3:-18862893 | MS.gene47268:CDS |
| AGGTACTGTTGGTGCTGCAC+TGG | 0.511056 | 6.3:+18864732 | None:intergenic |
| CTCGCTCCCGACGCCGTCAG+AGG | 0.513233 | 6.3:-18864814 | MS.gene47268:CDS |
| CGGCCTGCATCTGCCTCTGA+CGG | 0.528621 | 6.3:+18864801 | None:intergenic |
| ACGCCGTCAGAGGCAGATGC+AGG | 0.537355 | 6.3:-18864804 | MS.gene47268:CDS |
| GACGGCGTCGGGAGCGAGAG+CGG | 0.542417 | 6.3:+18864819 | None:intergenic |
| ATGTCAATTGCAGTACCCCT+TGG | 0.550699 | 6.3:+18862854 | None:intergenic |
| AAATTTGAAGCATGATCAGA+AGG | 0.576369 | 6.3:+18864437 | None:intergenic |
| GAGTTCCAACAGAAATGCCA+AGG | 0.583354 | 6.3:-18862871 | MS.gene47268:CDS |
| GCCGCCGCCCAACTAAGCGG+TGG | 0.588442 | 6.3:-18864782 | MS.gene47268:CDS |
| GTGAAACTGTGAGATCAAGA+TGG | 0.590101 | 6.3:-18864994 | MS.gene47268:CDS |
| ACTGCCACCGCTTAGTTGGG+CGG | 0.608647 | 6.3:+18864778 | None:intergenic |
| AGAATTCATAGTGAAAGTTG+AGG | 0.624134 | 6.3:+18864673 | None:intergenic |
| GCCACCGCTTAGTTGGGCGG+CGG | 0.641411 | 6.3:+18864781 | None:intergenic |
| CAGGCCGCCGCCCAACTAAG+CGG | 0.643678 | 6.3:-18864785 | MS.gene47268:CDS |
| TGCAGCACCAAGAGACAGAG+AGG | 0.645908 | 6.3:+18864712 | None:intergenic |
| AACTTTGAGACTGAACATGT+TGG | 0.650519 | 6.3:+18865050 | None:intergenic |
| AAGAGACAGAGAGGTACTGT+TGG | 0.665242 | 6.3:+18864721 | None:intergenic |
| TTGATGCAGAACTTGCAGCA+TGG | 0.678300 | 6.3:-18862755 | MS.gene47268:CDS |
| AGTTCCAACAGAAATGCCAA+GGG | 0.681583 | 6.3:-18862870 | MS.gene47268:CDS |
| GGTTGGAACTGAGACTCCAG+AGG | 0.711041 | 6.3:+18862793 | None:intergenic |
| GTTCCAACAGAAATGCCAAG+GGG | 0.773173 | 6.3:-18862869 | MS.gene47268:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTATATTAATTTTA+GGG | - | chr6.3:18864555-18864574 | MS.gene47268:intron | 0.0% |
| !!! | TATTTATTTATATTAATTTT+AGG | - | chr6.3:18864554-18864573 | MS.gene47268:intron | 0.0% |
| !! | AACTTTCAAAAAAAAAAAAA+TGG | + | chr6.3:18863292-18863311 | None:intergenic | 10.0% |
| !! | GTTCATAAAAAAAAAATTAT+AGG | + | chr6.3:18863143-18863162 | None:intergenic | 10.0% |
| !!! | AATATCATATTTTTTTGAAA+AGG | + | chr6.3:18863348-18863367 | None:intergenic | 10.0% |
| !!! | ATATCATATTTTTTTGAAAA+GGG | + | chr6.3:18863347-18863366 | None:intergenic | 10.0% |
| !!! | GTTTAGAAATTTTTAAATTA+AGG | + | chr6.3:18863838-18863857 | None:intergenic | 10.0% |
| !!! | TACTTATAATAATAACTTTT+CGG | - | chr6.3:18862865-18862884 | MS.gene47268:CDS | 10.0% |
| !!! | TTATTTATATTAATTTTAGG+GGG | - | chr6.3:18864557-18864576 | MS.gene47268:intron | 10.0% |
| !!! | TTATTTCAAAAACTTTATTT+AGG | + | chr6.3:18865026-18865045 | None:intergenic | 10.0% |
| !! | GAAAAATAAGTTAAAAAAGA+AGG | + | chr6.3:18864028-18864047 | None:intergenic | 15.0% |
| !!! | AAATAAAACTATCCTTTTTT+TGG | - | chr6.3:18863610-18863629 | MS.gene47268:intron | 15.0% |
| !!! | ACTTATAATAATAACTTTTC+GGG | - | chr6.3:18862866-18862885 | MS.gene47268:CDS | 15.0% |
| !!! | AGTTTTTGAAATAAATGTTT+TGG | - | chr6.3:18865032-18865051 | MS.gene47268:CDS | 15.0% |
| !!! | TATCATATTTTTTTGAAAAG+GGG | + | chr6.3:18863346-18863365 | None:intergenic | 15.0% |
| !!! | TTAAATTAAGGAATTAGTTT+TGG | + | chr6.3:18863826-18863845 | None:intergenic | 15.0% |
| !!! | TTTAATGAAGTTTTTTTTGA+AGG | - | chr6.3:18864449-18864468 | MS.gene47268:CDS | 15.0% |
| !! | AATAAATTAAGCATATACCT+GGG | + | chr6.3:18863102-18863121 | None:intergenic | 20.0% |
| !! | ACTGATTATAAACCAAAAAA+AGG | + | chr6.3:18863625-18863644 | None:intergenic | 20.0% |
| !! | ATATGCTTAATTTATTGCAT+GGG | - | chr6.3:18863106-18863125 | MS.gene47268:intron | 20.0% |
| !! | GATTGAAGAATTAATAAAAG+TGG | - | chr6.3:18863654-18863673 | MS.gene47268:intron | 20.0% |
| !! | GTTAAGATGATTACAAAATT+TGG | + | chr6.3:18863318-18863337 | None:intergenic | 20.0% |
| !! | TAATTGTATGTTTCAATTGT+CGG | + | chr6.3:18864364-18864383 | None:intergenic | 20.0% |
| !! | TATATGCTTAATTTATTGCA+TGG | - | chr6.3:18863105-18863124 | MS.gene47268:intron | 20.0% |
| !! | TTCACTAATTTGGTATAATA+TGG | + | chr6.3:18863992-18864011 | None:intergenic | 20.0% |
| !!! | ACTAATTTTTGTCCTTAAAA+AGG | + | chr6.3:18863396-18863415 | None:intergenic | 20.0% |
| !!! | ATCATATTTTTTTGAAAAGG+GGG | + | chr6.3:18863345-18863364 | None:intergenic | 20.0% |
| !!! | CTAATTTTTGTCCTTAAAAA+GGG | + | chr6.3:18863395-18863414 | None:intergenic | 20.0% |
| ! | ACCTCTCAAAAATAGTTTAA+AGG | - | chr6.3:18864905-18864924 | MS.gene47268:CDS | 25.0% |
| ! | AGAAAACTTCTTGAGAAATT+TGG | - | chr6.3:18862620-18862639 | MS.gene47268:intron | 25.0% |
| ! | AGAAAGGAATGTGATAAAAA+GGG | + | chr6.3:18863794-18863813 | None:intergenic | 25.0% |
| ! | AGCAATTTCTTTCACTAATT+TGG | + | chr6.3:18864002-18864021 | None:intergenic | 25.0% |
| ! | ATTGACATGAAAACAATGTT+TGG | - | chr6.3:18864665-18864684 | MS.gene47268:CDS | 25.0% |
| ! | CAATAAATTAAGCATATACC+TGG | + | chr6.3:18863103-18863122 | None:intergenic | 25.0% |
| ! | GAATAGAGAAAAACAATCTA+GGG | + | chr6.3:18863860-18863879 | None:intergenic | 25.0% |
| ! | GTTGTTTGGATTATTAGTAT+TGG | + | chr6.3:18862480-18862499 | None:intergenic | 25.0% |
| ! | TGAATAGAGAAAAACAATCT+AGG | + | chr6.3:18863861-18863880 | None:intergenic | 25.0% |
| !! | AAGAAGTTTTCTTATTCTCA+CGG | + | chr6.3:18862612-18862631 | None:intergenic | 25.0% |
| !! | AGTTTTCAACAAAATTGTCA+TGG | - | chr6.3:18864314-18864333 | MS.gene47268:intron | 25.0% |
| !! | TGAAAATGGATTCAAGTATA+AGG | + | chr6.3:18862556-18862575 | None:intergenic | 25.0% |
| !! | TTAAGACAAAACCCTTTTTA+AGG | - | chr6.3:18863381-18863400 | MS.gene47268:intron | 25.0% |
| !! | TTTTTATCACATTCCTTTCT+GGG | - | chr6.3:18863794-18863813 | MS.gene47268:intron | 25.0% |
| !!! | ACCTTTAAACTATTTTTGAG+AGG | + | chr6.3:18864909-18864928 | None:intergenic | 25.0% |
| !!! | ATATTAATTTTAGGGGGAAT+AGG | - | chr6.3:18864563-18864582 | MS.gene47268:intron | 25.0% |
| !!! | GTGATGCTAATGTTTTTTAT+TGG | - | chr6.3:18862651-18862670 | MS.gene47268:intron | 25.0% |
| !!! | TGGTTTATAATCAGTTTTGA+TGG | - | chr6.3:18863630-18863649 | MS.gene47268:intron | 25.0% |
| !!! | TTTTTAACTAATCAATGACC+TGG | + | chr6.3:18863910-18863929 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGGAATGAATGAA+GGG | + | chr6.3:18864110-18864129 | None:intergenic | 25.0% |
| AAATAATGCCACGACAAATT+TGG | + | chr6.3:18864414-18864433 | None:intergenic | 30.0% | |
| AGAATTCATAGTGAAAGTTG+AGG | + | chr6.3:18862834-18862853 | None:intergenic | 30.0% | |
| ATAATGAACCAAATTTGTCG+TGG | - | chr6.3:18864403-18864422 | MS.gene47268:intron | 30.0% | |
| CAGAAAGGAATGTGATAAAA+AGG | + | chr6.3:18863795-18863814 | None:intergenic | 30.0% | |
| CTTCATTCATTCCAGAAAAA+AGG | - | chr6.3:18864109-18864128 | MS.gene47268:intron | 30.0% | |
| TCAAATCAATTTGCCTCAAA+TGG | - | chr6.3:18863012-18863031 | MS.gene47268:intron | 30.0% | |
| TCAAATTTCAACTATTACCC+AGG | - | chr6.3:18863082-18863101 | MS.gene47268:intron | 30.0% | |
| TGTAAGAAACCTGTTTAAGT+TGG | + | chr6.3:18863246-18863265 | None:intergenic | 30.0% | |
| ! | AAAGTGAACTCATGTTTTTC+CGG | + | chr6.3:18863750-18863769 | None:intergenic | 30.0% |
| ! | AAATTTGAAGCATGATCAGA+AGG | + | chr6.3:18863070-18863089 | None:intergenic | 30.0% |
| ! | AATCGATGATAATGCAAATG+TGG | - | chr6.3:18864204-18864223 | MS.gene47268:intron | 30.0% |
| ! | CTTGAATCCATTTTCAATAG+TGG | - | chr6.3:18862560-18862579 | MS.gene47268:intron | 30.0% |
| ! | CTTTTTATCACATTCCTTTC+TGG | - | chr6.3:18863793-18863812 | MS.gene47268:intron | 30.0% |
| ! | GTAAGAAACCTGTTTAAGTT+GGG | + | chr6.3:18863245-18863264 | None:intergenic | 30.0% |
| ! | GTTGTACTAATCTTCTTTTC+CGG | - | chr6.3:18863728-18863747 | MS.gene47268:intron | 30.0% |
| ! | GTTTGGTGAAGATGTAATAT+TGG | - | chr6.3:18864682-18864701 | MS.gene47268:CDS | 30.0% |
| ! | TATGCTTTTCATTTAATCCC+AGG | + | chr6.3:18863705-18863724 | None:intergenic | 30.0% |
| ! | TCAAGTATAAGGATTTGTTC+AGG | + | chr6.3:18862545-18862564 | None:intergenic | 30.0% |
| !! | ATAAGGATTTGTTCAGGTTT+TGG | + | chr6.3:18862539-18862558 | None:intergenic | 30.0% |
| !! | ATCCATTTTCAATAGTGGAA+TGG | - | chr6.3:18862565-18862584 | MS.gene47268:intron | 30.0% |
| !! | ATTTTGATCCCAACTTAAAC+AGG | - | chr6.3:18863234-18863253 | MS.gene47268:intron | 30.0% |
| !! | ATTTTGTTATACTCTTCTCC+AGG | - | chr6.3:18863889-18863908 | MS.gene47268:intron | 30.0% |
| !!! | CTTTTTTCTGGAATGAATGA+AGG | + | chr6.3:18864111-18864130 | None:intergenic | 30.0% |
| !!! | TTTTTCTGGAATGAATGAAG+GGG | + | chr6.3:18864109-18864128 | None:intergenic | 30.0% |
| AAGAAACCAAACTCATTGGT+TGG | + | chr6.3:18864731-18864750 | None:intergenic | 35.0% | |
| AGACGACACTTATAATGAGA+CGG | + | chr6.3:18864820-18864839 | None:intergenic | 35.0% | |
| CATCAAGAAACCAAACTCAT+TGG | + | chr6.3:18864735-18864754 | None:intergenic | 35.0% | |
| GAATCTACAACACTTGTCAA+AGG | + | chr6.3:18863562-18863581 | None:intergenic | 35.0% | |
| GACCATTCCACTATTGAAAA+TGG | + | chr6.3:18862570-18862589 | None:intergenic | 35.0% | |
| GGAACTGTCAAATCAACAAA+AGG | + | chr6.3:18863684-18863703 | None:intergenic | 35.0% | |
| GTGATCACAGTGTTTATCAA+TGG | - | chr6.3:18864611-18864630 | MS.gene47268:intron | 35.0% | |
| GTTTCAATTGTCGGTGATAT+TGG | + | chr6.3:18864355-18864374 | None:intergenic | 35.0% | |
| ! | ATTCTCACGGTTTCATCTTT+TGG | + | chr6.3:18862599-18862618 | None:intergenic | 35.0% |
| ! | TCTCACAGTTTCACTCTTTT+CGG | + | chr6.3:18862504-18862523 | None:intergenic | 35.0% |
| !! | AACTTTGAGACTGAACATGT+TGG | + | chr6.3:18862457-18862476 | None:intergenic | 35.0% |
| !! | ATTTTAGGGGGAATAGGATA+TGG | - | chr6.3:18864569-18864588 | MS.gene47268:intron | 35.0% |
| !! | GTAATATTGGTTCATTCCTC+TGG | - | chr6.3:18864695-18864714 | MS.gene47268:CDS | 35.0% |
| !! | TTGTTGATTTGACAGTTCCT+GGG | - | chr6.3:18863685-18863704 | MS.gene47268:intron | 35.0% |
| !! | TTTGTTGATTTGACAGTTCC+TGG | - | chr6.3:18863684-18863703 | MS.gene47268:intron | 35.0% |
| !! | TTTTAGGGGGAATAGGATAT+GGG | - | chr6.3:18864570-18864589 | MS.gene47268:intron | 35.0% |
| !!! | TGTTTTGGTGTTTTTGTTCC+AGG | - | chr6.3:18865047-18865066 | MS.gene47268:CDS | 35.0% |
| AGTTCCAACAGAAATGCCAA+GGG | - | chr6.3:18864634-18864653 | MS.gene47268:intron | 40.0% | |
| CCTTGGGAAGACAAAATGAA+GGG | + | chr6.3:18864067-18864086 | None:intergenic | 40.0% | |
| GTGAAACTGTGAGATCAAGA+TGG | - | chr6.3:18862510-18862529 | MS.gene47268:intron | 40.0% | |
| TCAGTTCCAACCAATGAGTT+TGG | - | chr6.3:18864722-18864741 | MS.gene47268:CDS | 40.0% | |
| TTTAGGGGGAATAGGATATG+GGG | - | chr6.3:18864571-18864590 | MS.gene47268:intron | 40.0% | |
| ! | CTTGAGAAATTTGGAGCTGT+TGG | - | chr6.3:18862629-18862648 | MS.gene47268:intron | 40.0% |
| !! | GCTGAAGTATTGTCCATTTG+AGG | + | chr6.3:18863028-18863047 | None:intergenic | 40.0% |
| !! | GTTTTGGATGAAACCCAGAA+AGG | + | chr6.3:18863810-18863829 | None:intergenic | 40.0% |
| !!! | CACTGTGATCTCCTTTTTTC+TGG | + | chr6.3:18864123-18864142 | None:intergenic | 40.0% |
| !!! | TCACTCTTTTCGGTGTTGTT+TGG | + | chr6.3:18862494-18862513 | None:intergenic | 40.0% |
| AACAGTACCTCTCTGTCTCT+TGG | - | chr6.3:18862785-18862804 | MS.gene47268:CDS | 45.0% | |
| ATGTCAATTGCAGTACCCCT+TGG | + | chr6.3:18864653-18864672 | None:intergenic | 45.0% | |
| CCTTTGTCACACTTTGCCTT+GGG | + | chr6.3:18864083-18864102 | None:intergenic | 45.0% | |
| GAGTTCCAACAGAAATGCCA+AGG | - | chr6.3:18864633-18864652 | MS.gene47268:intron | 45.0% | |
| GCATGGTGAAAGCTACTATC+TGG | - | chr6.3:18864766-18864785 | MS.gene47268:CDS | 45.0% | |
| GCCTTGGGAAGACAAAATGA+AGG | + | chr6.3:18864068-18864087 | None:intergenic | 45.0% | |
| GTTCCAACAGAAATGCCAAG+GGG | - | chr6.3:18864635-18864654 | MS.gene47268:intron | 45.0% | |
| TATGGGGGGAGTAATGTTTC+AGG | - | chr6.3:18864587-18864606 | MS.gene47268:intron | 45.0% | |
| TCCTTTGTCACACTTTGCCT+TGG | + | chr6.3:18864084-18864103 | None:intergenic | 45.0% | |
| TTAGGGGGAATAGGATATGG+GGG | - | chr6.3:18864572-18864591 | MS.gene47268:intron | 45.0% | |
| TTGATGCAGAACTTGCAGCA+TGG | - | chr6.3:18864749-18864768 | MS.gene47268:CDS | 45.0% | |
| ! | CCCTTCATTTTGTCTTCCCA+AGG | - | chr6.3:18864064-18864083 | MS.gene47268:intron | 45.0% |
| ! | CTCACGGTTTCATCTTTTGG+TGG | + | chr6.3:18862596-18862615 | None:intergenic | 45.0% |
| !! | AAGAGACAGAGAGGTACTGT+TGG | + | chr6.3:18862786-18862805 | None:intergenic | 45.0% |
| !! | CTGCACTGGTATTGGTGATA+TGG | + | chr6.3:18862761-18862780 | None:intergenic | 45.0% |
| !! | GGGTTTGGTGGTTTGTACTT+AGG | - | chr6.3:18862983-18863002 | MS.gene47268:intron | 45.0% |
| !! | ATTAAACAAAAATTATTTAA+AGG | + | chr6.3:18863483-18863502 | None:intergenic | 5.0% |
| !! | TGAAATAAAAAAATTTATTT+AGG | + | chr6.3:18864994-18865013 | None:intergenic | 5.0% |
| !! | TTTAAAAAATATATAAAAGT+AGG | + | chr6.3:18863592-18863611 | None:intergenic | 5.0% |
| !!! | TTTATTTATATTAATTTTAG+GGG | - | chr6.3:18864556-18864575 | MS.gene47268:intron | 5.0% |
| AGTACTGCCACCGCTTAGTT+GGG | + | chr6.3:18862732-18862751 | None:intergenic | 50.0% | |
| CCCAAGGCAAAGTGTGACAA+AGG | - | chr6.3:18864080-18864099 | MS.gene47268:intron | 50.0% | |
| CTTGTGCTTGCTTTGACACC+TGG | + | chr6.3:18865068-18865087 | None:intergenic | 50.0% | |
| GGTTCGTCTTCATCATGTGC+TGG | - | chr6.3:18862887-18862906 | MS.gene47268:CDS | 50.0% | |
| GTACCCCTTGGCATTTCTGT+TGG | + | chr6.3:18864641-18864660 | None:intergenic | 50.0% | |
| TAGGGGGAATAGGATATGGG+GGG | - | chr6.3:18864573-18864592 | MS.gene47268:intron | 50.0% | |
| TCGTCTTCATCATGTGCTGG+TGG | - | chr6.3:18862890-18862909 | MS.gene47268:CDS | 50.0% | |
| !! | TGTTGGTGCTGCACTGGTAT+TGG | + | chr6.3:18862769-18862788 | None:intergenic | 50.0% |
| CAGTACTGCCACCGCTTAGT+TGG | + | chr6.3:18862733-18862752 | None:intergenic | 55.0% | |
| CTGCTGCTGGTGGAGAACAA+GGG | - | chr6.3:18862963-18862982 | MS.gene47268:intron | 55.0% | |
| GCTGGTGGAGAACAAGGGTT+TGG | - | chr6.3:18862968-18862987 | MS.gene47268:intron | 55.0% | |
| GGTGGAGAACAAGGGTTTGG+TGG | - | chr6.3:18862971-18862990 | MS.gene47268:intron | 55.0% | |
| GGTTGGAACTGAGACTCCAG+AGG | + | chr6.3:18864714-18864733 | None:intergenic | 55.0% | |
| TGCAGCACCAAGAGACAGAG+AGG | + | chr6.3:18862795-18862814 | None:intergenic | 55.0% | |
| ! | TCATCATGTGCTGGTGGTGC+TGG | - | chr6.3:18862896-18862915 | MS.gene47268:CDS | 55.0% |
| !! | AGGTACTGTTGGTGCTGCAC+TGG | + | chr6.3:18862775-18862794 | None:intergenic | 55.0% |
| !! | CTGTCTCTTGGTGCTGCACT+TGG | - | chr6.3:18862797-18862816 | MS.gene47268:CDS | 55.0% |
| !! | CTTGGTGCTGCACTTGGTCT+TGG | - | chr6.3:18862803-18862822 | MS.gene47268:CDS | 55.0% |
| !! | GCTGGTGTTGGTCTTGGTCT+TGG | - | chr6.3:18862938-18862957 | MS.gene47268:intron | 55.0% |
| ACTGCCACCGCTTAGTTGGG+CGG | + | chr6.3:18862729-18862748 | None:intergenic | 60.0% | |
| GCTGCTGCTGGTGGAGAACA+AGG | - | chr6.3:18862962-18862981 | MS.gene47268:intron | 60.0% | |
| ! | TGTGCTGGTGGTGCTGGAGT+TGG | - | chr6.3:18862902-18862921 | MS.gene47268:CDS | 60.0% |
| !! | CTTGGTCTTGGTGCTGCTGC+TGG | - | chr6.3:18862950-18862969 | MS.gene47268:intron | 60.0% |
| !! | GCTGGAGTTGGTGTTGGTGC+TGG | - | chr6.3:18862914-18862933 | MS.gene47268:CDS | 60.0% |
| !! | GCTGGTGCTGGTGTTGGTCT+TGG | - | chr6.3:18862932-18862951 | MS.gene47268:intron | 60.0% |
| !! | GGTGCTGCACTTGGTCTTGG+TGG | - | chr6.3:18862806-18862825 | MS.gene47268:CDS | 60.0% |
| !! | GGTGGTGCTGGAGTTGGTGT+TGG | - | chr6.3:18862908-18862927 | MS.gene47268:CDS | 60.0% |
| !! | GTTGGTGCTGGTGCTGGTGT+TGG | - | chr6.3:18862926-18862945 | MS.gene47268:CDS | 60.0% |
| !! | GTTGGTGTTGGTGCTGGTGC+TGG | - | chr6.3:18862920-18862939 | MS.gene47268:CDS | 60.0% |
| ACGCCGTCAGAGGCAGATGC+AGG | - | chr6.3:18862700-18862719 | MS.gene47268:intron | 65.0% | |
| CATCTGCCTCTGACGGCGTC+GGG | + | chr6.3:18862699-18862718 | None:intergenic | 65.0% | |
| CGGCCTGCATCTGCCTCTGA+CGG | + | chr6.3:18862706-18862725 | None:intergenic | 65.0% | |
| GCATCTGCCTCTGACGGCGT+CGG | + | chr6.3:18862700-18862719 | None:intergenic | 65.0% | |
| !! | GGTCTTGGTGCTGCTGCTGG+TGG | - | chr6.3:18862953-18862972 | MS.gene47268:intron | 65.0% |
| CAGGCCGCCGCCCAACTAAG+CGG | - | chr6.3:18862719-18862738 | MS.gene47268:intron | 70.0% | |
| GCCACCGCTTAGTTGGGCGG+CGG | + | chr6.3:18862726-18862745 | None:intergenic | 70.0% | |
| CTCGCTCCCGACGCCGTCAG+AGG | - | chr6.3:18862690-18862709 | MS.gene47268:intron | 75.0% | |
| GCCGCCGCCCAACTAAGCGG+TGG | - | chr6.3:18862722-18862741 | MS.gene47268:intron | 75.0% | |
| ! | GACGGCGTCGGGAGCGAGAG+CGG | + | chr6.3:18862688-18862707 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 18862434 | 18865092 | 18862434 | ID=MS.gene47268 |
| chr6.3 | mRNA | 18862434 | 18865092 | 18862434 | ID=MS.gene47268.t1;Parent=MS.gene47268 |
| chr6.3 | exon | 18864639 | 18865092 | 18864639 | ID=MS.gene47268.t1.exon1;Parent=MS.gene47268.t1 |
| chr6.3 | CDS | 18864639 | 18865092 | 18864639 | ID=cds.MS.gene47268.t1;Parent=MS.gene47268.t1 |
| chr6.3 | exon | 18864423 | 18864521 | 18864423 | ID=MS.gene47268.t1.exon2;Parent=MS.gene47268.t1 |
| chr6.3 | CDS | 18864423 | 18864521 | 18864423 | ID=cds.MS.gene47268.t1;Parent=MS.gene47268.t1 |
| chr6.3 | exon | 18862739 | 18862950 | 18862739 | ID=MS.gene47268.t1.exon3;Parent=MS.gene47268.t1 |
| chr6.3 | CDS | 18862739 | 18862950 | 18862739 | ID=cds.MS.gene47268.t1;Parent=MS.gene47268.t1 |
| chr6.3 | exon | 18862434 | 18862457 | 18862434 | ID=MS.gene47268.t1.exon4;Parent=MS.gene47268.t1 |
| chr6.3 | CDS | 18862434 | 18862457 | 18862434 | ID=cds.MS.gene47268.t1;Parent=MS.gene47268.t1 |
| Gene Sequence |
| Protein sequence |
