AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47271

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47271.t1 MTR_6g027450 88.554 332 29 2 1 332 7 329 0.0 591
MS.gene47271.t1 MTR_6g027460 75.522 335 68 2 1 321 7 341 0.0 507
MS.gene47271.t1 MTR_7g086780 48.246 342 143 9 4 329 6 329 4.81e-93 283
MS.gene47271.t1 MTR_7g010950 44.828 203 88 6 42 239 94 277 1.65e-46 164
MS.gene47271.t1 MTR_4g082060 63.889 108 37 2 45 151 85 191 4.29e-42 152
MS.gene47271.t1 MTR_3g435480 43.915 189 83 5 42 229 105 271 2.92e-41 150
MS.gene47271.t1 MTR_6g012450 39.592 245 117 7 41 264 96 330 5.35e-41 149
MS.gene47271.t1 MTR_8g044220 34.146 287 136 8 4 253 11 281 9.73e-39 142
MS.gene47271.t1 MTR_5g041420 52.252 111 44 2 41 145 99 206 2.49e-32 123
MS.gene47271.t1 MTR_2g016030 74.194 62 16 0 75 136 39 100 2.30e-29 110
MS.gene47271.t1 MTR_5g041530 51.429 105 48 1 40 144 100 201 1.77e-28 114
MS.gene47271.t1 MTR_5g041380 44.286 140 71 3 39 176 88 222 2.38e-27 110
MS.gene47271.t1 MTR_5g041400 54.444 90 35 2 47 136 89 172 9.22e-27 108
MS.gene47271.t1 MTR_8g027295 63.492 63 23 0 78 140 19 81 5.67e-26 104
MS.gene47271.t1 MTR_4g088580 46.667 105 46 2 42 138 8 110 9.13e-26 106
MS.gene47271.t1 MTR_8g068210 48.936 94 35 2 45 138 7 87 2.04e-25 104
MS.gene47271.t1 MTR_3g091820 59.155 71 29 0 67 137 27 97 2.25e-25 103
MS.gene47271.t1 MTR_2g093220 55.844 77 33 1 62 137 18 94 7.28e-25 102
MS.gene47271.t1 MTR_4g461080 57.143 77 32 1 60 135 5 81 7.38e-25 102
MS.gene47271.t1 MTR_4g022370 62.903 62 23 0 76 137 75 136 7.38e-25 103
MS.gene47271.t1 MTR_8g479350 67.241 58 19 0 83 140 68 125 1.05e-24 102
MS.gene47271.t1 MTR_8g079060 42.609 115 66 0 83 197 29 143 2.45e-24 99.4
MS.gene47271.t1 MTR_2g059540 75.510 49 12 0 83 131 31 79 3.19e-24 98.6
MS.gene47271.t1 MTR_4g089095 50.505 99 33 2 55 138 7 104 4.63e-24 100
MS.gene47271.t1 MTR_2g096740 58.824 68 28 0 70 137 49 116 5.66e-24 99.8
MS.gene47271.t1 MTR_4g063780 63.492 63 22 1 76 137 68 130 5.83e-24 100
MS.gene47271.t1 MTR_2g096740 58.824 68 28 0 70 137 64 131 6.22e-24 100
MS.gene47271.t1 MTR_2g013370 70.690 58 16 1 81 138 44 100 1.26e-23 98.6
MS.gene47271.t1 MTR_1g077600 50.000 80 35 1 61 135 16 95 1.79e-23 98.2
MS.gene47271.t1 MTR_4g089095 73.214 56 14 1 83 138 16 70 1.81e-23 97.8
MS.gene47271.t1 MTR_1g077600 50.000 80 35 1 61 135 16 95 2.09e-23 98.2
MS.gene47271.t1 MTR_2g014060 59.375 64 26 0 71 134 13 76 3.84e-23 98.2
MS.gene47271.t1 MTR_4g109980 67.925 53 17 0 81 133 38 90 4.80e-23 97.8
MS.gene47271.t1 MTR_7g059400 55.556 72 30 1 68 137 59 130 5.66e-23 98.2
MS.gene47271.t1 MTR_8g015840 69.231 52 16 0 83 134 20 71 1.02e-22 94.7
MS.gene47271.t1 MTR_7g024670 70.909 55 15 1 84 137 78 132 4.18e-22 95.9
MS.gene47271.t1 MTR_5g031440 63.636 55 20 0 79 133 39 93 5.09e-22 95.1
MS.gene47271.t1 MTR_3g090430 56.164 73 30 1 67 137 33 105 6.00e-22 95.1
MS.gene47271.t1 MTR_2g014170 71.429 49 14 0 83 131 45 93 1.13e-21 94.0
MS.gene47271.t1 MTR_3g077750 43.810 105 51 4 37 133 7 111 1.73e-21 93.6
MS.gene47271.t1 MTR_1g056810 66.038 53 18 0 85 137 14 66 3.13e-21 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47271.t1 AT3G47500 47.368 152 62 3 39 190 71 204 9.88e-40 145
MS.gene47271.t1 AT5G39660 57.391 115 36 2 49 150 92 206 4.19e-38 141
MS.gene47271.t1 AT5G39660 57.391 115 36 2 49 150 92 206 4.19e-38 141
MS.gene47271.t1 AT5G39660 57.391 115 36 2 49 150 92 206 4.19e-38 141
MS.gene47271.t1 AT1G26790 45.181 166 68 4 3 145 10 175 3.64e-36 134
MS.gene47271.t1 AT5G62430 45.270 148 49 4 3 148 4 121 5.75e-35 129
MS.gene47271.t1 AT2G34140 56.989 93 27 1 57 136 19 111 1.13e-33 122
MS.gene47271.t1 AT1G69570 47.967 123 43 2 71 192 120 222 4.11e-32 124
MS.gene47271.t1 AT1G29160 55.814 86 35 1 77 159 56 141 4.72e-31 115
MS.gene47271.t1 AT3G55370 57.143 70 30 0 79 148 72 141 2.05e-25 104
MS.gene47271.t1 AT3G55370 57.143 70 30 0 79 148 72 141 2.29e-25 104
MS.gene47271.t1 AT3G55370 57.143 70 30 0 79 148 117 186 4.66e-25 104
MS.gene47271.t1 AT5G60200 45.133 113 54 2 77 186 49 156 9.17e-25 101
MS.gene47271.t1 AT2G28810 41.414 99 55 1 39 134 30 128 1.57e-24 102
MS.gene47271.t1 AT2G28810 41.414 99 55 1 39 134 47 145 2.08e-24 102
MS.gene47271.t1 AT1G51700 55.714 70 29 1 65 134 17 84 3.05e-24 98.2
MS.gene47271.t1 AT3G21270 71.698 53 15 0 83 135 29 81 3.53e-24 98.2
MS.gene47271.t1 AT5G60850 70.909 55 16 0 83 137 51 105 3.80e-24 100
MS.gene47271.t1 AT4G24060 60.938 64 25 0 74 137 44 107 5.71e-24 100
MS.gene47271.t1 AT2G37590 62.712 59 22 0 79 137 85 143 7.11e-24 100
MS.gene47271.t1 AT3G61850 63.333 60 22 0 78 137 57 116 7.87e-24 99.4
MS.gene47271.t1 AT3G61850 63.333 60 22 0 78 137 57 116 7.87e-24 99.4
MS.gene47271.t1 AT3G61850 63.333 60 22 0 78 137 69 128 1.01e-23 99.4
MS.gene47271.t1 AT1G28310 67.857 56 18 0 83 138 27 82 1.18e-23 99.4
MS.gene47271.t1 AT3G61850 63.333 60 22 0 78 137 57 116 1.48e-23 99.0
MS.gene47271.t1 AT1G28310 67.857 56 18 0 83 138 51 106 1.70e-23 99.4
MS.gene47271.t1 AT3G61850 63.333 60 22 0 78 137 69 128 1.74e-23 99.4
MS.gene47271.t1 AT5G65590 69.091 55 17 0 83 137 41 95 2.42e-23 98.6
MS.gene47271.t1 AT3G45610 58.065 62 26 0 79 140 36 97 2.61e-23 97.1
MS.gene47271.t1 AT1G07640 67.857 56 17 1 83 137 21 76 5.12e-23 97.1
MS.gene47271.t1 AT3G50410 67.273 55 18 0 83 137 30 84 5.58e-23 96.3
MS.gene47271.t1 AT5G66940 40.310 129 65 3 70 198 26 142 6.05e-23 95.5
MS.gene47271.t1 AT1G07640 67.857 56 17 1 83 137 77 132 8.34e-23 97.4
MS.gene47271.t1 AT1G07640 67.857 56 17 1 83 137 85 140 1.02e-22 97.4
MS.gene47271.t1 AT4G00940 54.167 72 29 1 71 138 52 123 1.05e-22 96.3
MS.gene47271.t1 AT4G00940 54.167 72 29 1 71 138 52 123 1.05e-22 96.3
MS.gene47271.t1 AT4G00940 54.167 72 29 1 71 138 52 123 1.05e-22 96.3
MS.gene47271.t1 AT5G02460 59.677 62 25 0 76 137 88 149 1.12e-22 97.8
MS.gene47271.t1 AT4G38000 48.352 91 37 2 82 171 40 121 1.82e-22 94.7
MS.gene47271.t1 AT1G64620 58.333 60 25 0 72 131 38 97 2.70e-22 96.3
MS.gene47271.t1 AT2G28510 67.857 56 18 0 85 140 50 105 2.71e-22 95.1
MS.gene47271.t1 AT4G21050 50.000 78 37 1 63 138 2 79 1.35e-21 91.7
MS.gene47271.t1 AT5G62940 40.367 109 49 2 41 133 15 123 3.48e-21 93.6
MS.gene47271.t1 AT3G52440 64.151 53 19 0 85 137 27 79 3.68e-21 91.3
MS.gene47271.t1 AT3G52440 64.151 53 19 0 85 137 46 98 5.08e-21 91.3
MS.gene47271.t1 AT2G46590 62.264 53 20 0 78 130 63 115 8.82e-21 92.0
MS.gene47271.t1 AT2G46590 62.264 53 20 0 78 130 75 127 9.50e-21 92.0
MS.gene47271.t1 AT1G21340 68.000 50 16 0 85 134 40 89 1.12e-20 90.1
MS.gene47271.t1 AT1G47655 65.306 49 17 0 83 131 29 77 1.25e-20 89.0
MS.gene47271.t1 AT4G21040 56.140 57 25 0 85 141 27 83 7.37e-17 79.0
MS.gene47271.t1 AT4G21080 54.386 57 26 0 85 141 27 83 2.09e-16 78.2

Find 57 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAACAATTATAGAGAAAA+TGG 0.209366 6.3:-18965571 MS.gene47271:CDS
ATATTTCTCTTATCGTTTCT+AGG 0.215347 6.3:+18965604 None:intergenic
AATGGTATTGTCATAAAATT+TGG 0.242341 6.3:-18965673 MS.gene47271:CDS
AATTTGTCCCTGAATCATTT+AGG 0.243494 6.3:-18965285 MS.gene47271:CDS
GATCCATTCCTAAATGATTC+AGG 0.270698 6.3:+18965277 None:intergenic
GTCGGAAGTGTCATAGATAT+TGG 0.311203 6.3:-18965870 MS.gene47271:CDS
ACATCGAATTGTTAGATTCA+TGG 0.318190 6.3:+18965632 None:intergenic
TTTAGGTGCTCAAGTAATAA+TGG 0.337129 6.3:-18965691 MS.gene47271:CDS
AAGCACTGTGGAAGATAATA+TGG 0.348391 6.3:-18966025 MS.gene47271:CDS
TTGTTCAAGCTTTGATTCAA+TGG 0.349711 6.3:+18965421 None:intergenic
TATCCGAATCTGAACATAAT+AGG 0.369361 6.3:-18965486 MS.gene47271:CDS
AGGAATGGATCAGTTTCAAT+AGG 0.385406 6.3:-18965265 MS.gene47271:CDS
GCTCTTTGGAAAGAAGATTC+AGG 0.390549 6.3:-18967278 MS.gene47271:CDS
GTCTGAAAATGTTCGGCATA+TGG 0.390908 6.3:+18965323 None:intergenic
CTAACAATTATAGAGAAAAT+GGG 0.415105 6.3:-18965570 MS.gene47271:CDS
ACAAATTGCAAGCCAATGTT+TGG 0.415479 6.3:+18965301 None:intergenic
GAACTAGGATCAACGTCATA+AGG 0.416743 6.3:+18965358 None:intergenic
TGACCTATTATGTTCAGATT+CGG 0.423438 6.3:+18965483 None:intergenic
GGACATTGAACAATCTTGTC+AGG 0.428555 6.3:+18965964 None:intergenic
TATTGTCATAAAATTTGGTC+TGG 0.429150 6.3:-18965668 MS.gene47271:CDS
AGAAACGTTCCTTTCGGTGC+AGG 0.439748 6.3:-18965829 MS.gene47271:CDS
CTTGAACAATGTTCCTTCCA+TGG 0.451475 6.3:-18965407 MS.gene47271:CDS
CGCCACATGATTGTAGCTTC+CGG 0.453024 6.3:-18965772 MS.gene47271:CDS
ATGTTTGGTCTGAAAATGTT+CGG 0.462260 6.3:+18965316 None:intergenic
AGAGCTACCCTGCATCTTCA+TGG 0.465844 6.3:-18965450 MS.gene47271:CDS
TTCCTTTCGGTGCAGGGAGA+CGG 0.475764 6.3:-18965822 MS.gene47271:CDS
ACTTACCATGGTTGAAGAGT+TGG 0.478391 6.3:+18967255 None:intergenic
GGCGTTGCTTTCAAAATTTG+AGG 0.487467 6.3:+18965738 None:intergenic
GGAATCATCCATGAAGATGC+AGG 0.501713 6.3:+18965442 None:intergenic
AACGTTTCTCATTGTTCCAC+CGG 0.503306 6.3:+18965843 None:intergenic
ACAATGAGAAACGTTCCTTT+CGG 0.504607 6.3:-18965835 MS.gene47271:CDS
GTCCCTGAATCATTTAGGAA+TGG 0.506453 6.3:-18965280 MS.gene47271:CDS
AACTAGGATCAACGTCATAA+GGG 0.509596 6.3:+18965359 None:intergenic
ATCCATTCCTAAATGATTCA+GGG 0.518378 6.3:+18965278 None:intergenic
TGTGTATCTTCTGTGACAAA+CGG 0.525958 6.3:-18965529 MS.gene47271:CDS
TGGTACCACTGCATTGAACT+AGG 0.528512 6.3:+18965343 None:intergenic
GTGTTGAAACTGTTGCATCT+TGG 0.528822 6.3:+18965943 None:intergenic
GAAACGTTCCTTTCGGTGCA+GGG 0.532355 6.3:-18965828 MS.gene47271:CDS
CGCAGCAGATTCGGTAGAAG+AGG 0.534262 6.3:+18965717 None:intergenic
TGTCATAGATATTGGACTGC+CGG 0.542196 6.3:-18965862 MS.gene47271:CDS
TTCCGTCTCCCTGCACCGAA+AGG 0.555844 6.3:+18965820 None:intergenic
ATTTGAGGTTGAAATTCCAC+CGG 0.565984 6.3:+18965753 None:intergenic
CTCTTCTACCGAATCTGCTG+CGG 0.575342 6.3:-18965716 MS.gene47271:CDS
TCAGGCCAACTCTTCAACCA+TGG 0.613442 6.3:-18967260 MS.gene47271:intron
ATTGAAGATTGAACCATGGA+AGG 0.614956 6.3:+18965394 None:intergenic
CATAGATATTGGACTGCCGG+TGG 0.627706 6.3:-18965859 MS.gene47271:CDS
GATGCAGGGTAGCTCTGCAA+TGG 0.629128 6.3:+18965457 None:intergenic
TAACAATTATAGAGAAAATG+GGG 0.634495 6.3:-18965569 MS.gene47271:CDS
GAATCATCCATGAAGATGCA+GGG 0.636010 6.3:+18965443 None:intergenic
CACATGATTGTAGCTTCCGG+TGG 0.649268 6.3:-18965769 MS.gene47271:CDS
TGCAGTAACTCAAAGCACAA+AGG 0.653363 6.3:-18966126 MS.gene47271:CDS
GTGACAAACGGTTATACTCG+AGG 0.654795 6.3:-18965517 MS.gene47271:CDS
ACTACAATGTCAGTCAACCT+CGG 0.657312 6.3:-18965900 MS.gene47271:CDS
CACCGGAAGCTACAATCATG+TGG 0.658948 6.3:+18965770 None:intergenic
CTGCATTGAAGATTGAACCA+TGG 0.670669 6.3:+18965390 None:intergenic
TTGATCCTAGTTCAATGCAG+TGG 0.672056 6.3:-18965348 MS.gene47271:CDS
AAAAGTTAACACAAGCACTG+TGG 0.719835 6.3:-18966037 MS.gene47271:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACTATAAAATTCCTTA+TGG + chr6.3:18966227-18966246 None:intergenic 15.0%
!! AATTTAATAAATTGAGACTA+TGG - chr6.3:18965546-18965565 MS.gene47271:CDS 15.0%
!! ATATTCAAAAAACAAAATCA+CGG + chr6.3:18966309-18966328 None:intergenic 15.0%
!! GAAAATATAGACAATATATT+TGG - chr6.3:18965605-18965624 MS.gene47271:CDS 15.0%
!! TTCTAAATTAACATGAAAAA+TGG + chr6.3:18965324-18965343 None:intergenic 15.0%
!!! AGAATTAAGAAATTTTTAAG+AGG + chr6.3:18965833-18965852 None:intergenic 15.0%
!!! TAATACTCTTCAAATTTTAA+AGG + chr6.3:18965405-18965424 None:intergenic 15.0%
!! AATGGTATTGTCATAAAATT+TGG - chr6.3:18966853-18966872 MS.gene47271:intron 20.0%
!! CTAACAATTATAGAGAAAAT+GGG - chr6.3:18966956-18966975 MS.gene47271:intron 20.0%
!! TAACAATTATAGAGAAAATG+GGG - chr6.3:18966957-18966976 MS.gene47271:intron 20.0%
!! TATTAAATCATACAATTGCT+TGG - chr6.3:18965770-18965789 MS.gene47271:CDS 20.0%
!! TGTTTCTTCTAATATCAAAT+AGG - chr6.3:18965651-18965670 MS.gene47271:CDS 20.0%
!!! AACATCAACTAAGTTTTTTT+AGG - chr6.3:18966119-18966138 MS.gene47271:CDS 20.0%
!!! ACTATAATTCATGATGATTT+TGG + chr6.3:18966190-18966209 None:intergenic 20.0%
!!! ATAGTATAATTTGTCTTGAA+TGG - chr6.3:18965943-18965962 MS.gene47271:CDS 20.0%
!!! ATCATGAATTATAGTTCTAA+TGG - chr6.3:18966195-18966214 MS.gene47271:intron 20.0%
!!! GAATCTATTTTTGTGAAATT+GGG - chr6.3:18965694-18965713 MS.gene47271:CDS 20.0%
! AAAACCAATAATCGTAAACA+CGG - chr6.3:18966146-18966165 MS.gene47271:intron 25.0%
! AAGTTATCCAGAATAAAGTT+TGG + chr6.3:18966346-18966365 None:intergenic 25.0%
! ATATTTCTCTTATCGTTTCT+AGG + chr6.3:18966925-18966944 None:intergenic 25.0%
! GAGTTTCAACAAAATTATGA+TGG + chr6.3:18965983-18966002 None:intergenic 25.0%
! GCTAACAATTATAGAGAAAA+TGG - chr6.3:18966955-18966974 MS.gene47271:intron 25.0%
! TAAGATATGATAACTTACCA+TGG + chr6.3:18965286-18965305 None:intergenic 25.0%
! TATTGTCATAAAATTTGGTC+TGG - chr6.3:18966858-18966877 MS.gene47271:intron 25.0%
!! ATAATTCATGATGATTTTGG+TGG + chr6.3:18966187-18966206 None:intergenic 25.0%
!!! ATTTGGTTCTTTTCTTCAAA+GGG - chr6.3:18965622-18965641 MS.gene47271:CDS 25.0%
!!! CGAATCTATTTTTGTGAAAT+TGG - chr6.3:18965693-18965712 MS.gene47271:CDS 25.0%
!!! GCAAGTAGTTGATTTTATAT+AGG - chr6.3:18965583-18965602 MS.gene47271:CDS 25.0%
!!! TATTTGGTTCTTTTCTTCAA+AGG - chr6.3:18965621-18965640 MS.gene47271:CDS 25.0%
!!! TTCTCAATGTTTTGAATATG+AGG + chr6.3:18966436-18966455 None:intergenic 25.0%
AATTTGTCCCTGAATCATTT+AGG - chr6.3:18967241-18967260 MS.gene47271:intron 30.0%
AATTTGTCTTGAATGGTGAA+AGG - chr6.3:18965950-18965969 MS.gene47271:CDS 30.0%
ACATCGAATTGTTAGATTCA+TGG + chr6.3:18966897-18966916 None:intergenic 30.0%
ATCCATTCCTAAATGATTCA+GGG + chr6.3:18967251-18967270 None:intergenic 30.0%
ATGTTTGGTCTGAAAATGTT+CGG + chr6.3:18967213-18967232 None:intergenic 30.0%
TAAAGTTTGGCAACAAACTT+TGG + chr6.3:18966333-18966352 None:intergenic 30.0%
TATCCGAATCTGAACATAAT+AGG - chr6.3:18967040-18967059 MS.gene47271:intron 30.0%
TGACCTATTATGTTCAGATT+CGG + chr6.3:18967046-18967065 None:intergenic 30.0%
TTTAGGTGCTCAAGTAATAA+TGG - chr6.3:18966835-18966854 MS.gene47271:intron 30.0%
TTTGTTGCCAAACTTTATTC+TGG - chr6.3:18966336-18966355 MS.gene47271:intron 30.0%
! AACATTTTCAGACCAAACAT+TGG - chr6.3:18967213-18967232 MS.gene47271:intron 30.0%
! TTCTAATGGTTTGTACCATA+AGG - chr6.3:18966209-18966228 MS.gene47271:intron 30.0%
! TTGTTCAAGCTTTGATTCAA+TGG + chr6.3:18967108-18967127 None:intergenic 30.0%
!! GATTTTAGTATCATGCTCTT+TGG - chr6.3:18965234-18965253 MS.gene47271:CDS 30.0%
AACTAGGATCAACGTCATAA+GGG + chr6.3:18967170-18967189 None:intergenic 35.0%
ACAAATTGCAAGCCAATGTT+TGG + chr6.3:18967228-18967247 None:intergenic 35.0%
ACAATGAGAAACGTTCCTTT+CGG - chr6.3:18966691-18966710 MS.gene47271:intron 35.0%
AGGAATGGATCAGTTTCAAT+AGG - chr6.3:18967261-18967280 MS.gene47271:CDS 35.0%
ATTGAAGATTGAACCATGGA+AGG + chr6.3:18967135-18967154 None:intergenic 35.0%
GATCCATTCCTAAATGATTC+AGG + chr6.3:18967252-18967271 None:intergenic 35.0%
TGTGTATCTTCTGTGACAAA+CGG - chr6.3:18966997-18967016 MS.gene47271:intron 35.0%
! AAAAGTTAACACAAGCACTG+TGG - chr6.3:18966489-18966508 MS.gene47271:intron 35.0%
! AAGCACTGTGGAAGATAATA+TGG - chr6.3:18966501-18966520 MS.gene47271:intron 35.0%
! ATTTGAGGTTGAAATTCCAC+CGG + chr6.3:18966776-18966795 None:intergenic 35.0%
!!! CAATCTTGTCAGGTTTTTTG+AGG + chr6.3:18966555-18966574 None:intergenic 35.0%
!!! TGGTGCTCTTGTTTTTTTCA+AGG - chr6.3:18965790-18965809 MS.gene47271:CDS 35.0%
AACGTTTCTCATTGTTCCAC+CGG + chr6.3:18966686-18966705 None:intergenic 40.0%
ACTACAATGTCAGTCAACCT+CGG - chr6.3:18966626-18966645 MS.gene47271:intron 40.0%
ACTTACCATGGTTGAAGAGT+TGG + chr6.3:18965274-18965293 None:intergenic 40.0%
CTGCATTGAAGATTGAACCA+TGG + chr6.3:18967139-18967158 None:intergenic 40.0%
CTTGAACAATGTTCCTTCCA+TGG - chr6.3:18967119-18967138 MS.gene47271:intron 40.0%
GAACTAGGATCAACGTCATA+AGG + chr6.3:18967171-18967190 None:intergenic 40.0%
GAATCATCCATGAAGATGCA+GGG + chr6.3:18967086-18967105 None:intergenic 40.0%
GGACATTGAACAATCTTGTC+AGG + chr6.3:18966565-18966584 None:intergenic 40.0%
GTCACCGTGTTTACGATTAT+TGG + chr6.3:18966153-18966172 None:intergenic 40.0%
GTCCCTGAATCATTTAGGAA+TGG - chr6.3:18967246-18967265 MS.gene47271:intron 40.0%
GTCTGAAAATGTTCGGCATA+TGG + chr6.3:18967206-18967225 None:intergenic 40.0%
GTGTTGAAACTGTTGCATCT+TGG + chr6.3:18966586-18966605 None:intergenic 40.0%
TGCAGTAACTCAAAGCACAA+AGG - chr6.3:18966400-18966419 MS.gene47271:intron 40.0%
TGTCATAGATATTGGACTGC+CGG - chr6.3:18966664-18966683 MS.gene47271:intron 40.0%
TTGATCCTAGTTCAATGCAG+TGG - chr6.3:18967178-18967197 MS.gene47271:intron 40.0%
! GCTCTTTGGAAAGAAGATTC+AGG - chr6.3:18965248-18965267 MS.gene47271:CDS 40.0%
! GGCGTTGCTTTCAAAATTTG+AGG + chr6.3:18966791-18966810 None:intergenic 40.0%
!! GTCGGAAGTGTCATAGATAT+TGG - chr6.3:18966656-18966675 MS.gene47271:intron 40.0%
CCTAAAAACCGCAGCAGATT+CGG + chr6.3:18966821-18966840 None:intergenic 45.0%
GGAATCATCCATGAAGATGC+AGG + chr6.3:18967087-18967106 None:intergenic 45.0%
GTGACAAACGGTTATACTCG+AGG - chr6.3:18967009-18967028 MS.gene47271:intron 45.0%
TGGTACCACTGCATTGAACT+AGG + chr6.3:18967186-18967205 None:intergenic 45.0%
! GTCAACCTCGGCATTTTTGT+CGG - chr6.3:18966638-18966657 MS.gene47271:intron 45.0%
!! TGTATATAATATAATATATA+AGG - chr6.3:18966010-18966029 MS.gene47271:CDS 5.0%
!!! TATTTTTTAACATATTTATT+TGG - chr6.3:18965439-18965458 MS.gene47271:CDS 5.0%
AGAGCTACCCTGCATCTTCA+TGG - chr6.3:18967076-18967095 MS.gene47271:intron 50.0%
ATCGTAAACACGGTGACACG+TGG - chr6.3:18966156-18966175 MS.gene47271:intron 50.0%
CACATGATTGTAGCTTCCGG+TGG - chr6.3:18966757-18966776 MS.gene47271:intron 50.0%
CACCGGAAGCTACAATCATG+TGG + chr6.3:18966759-18966778 None:intergenic 50.0%
CACTTCCGACAAAAATGCCG+AGG + chr6.3:18966646-18966665 None:intergenic 50.0%
CATAGATATTGGACTGCCGG+TGG - chr6.3:18966667-18966686 MS.gene47271:intron 50.0%
CGCCACATGATTGTAGCTTC+CGG - chr6.3:18966754-18966773 MS.gene47271:intron 50.0%
CTCTTCTACCGAATCTGCTG+CGG - chr6.3:18966810-18966829 MS.gene47271:intron 50.0%
TCAGGCCAACTCTTCAACCA+TGG - chr6.3:18965266-18965285 MS.gene47271:CDS 50.0%
! AGAAACGTTCCTTTCGGTGC+AGG - chr6.3:18966697-18966716 MS.gene47271:intron 50.0%
! CCGAATCTGCTGCGGTTTTT+AGG - chr6.3:18966818-18966837 MS.gene47271:intron 50.0%
! GAAACGTTCCTTTCGGTGCA+GGG - chr6.3:18966698-18966717 MS.gene47271:intron 50.0%
! CGCAGCAGATTCGGTAGAAG+AGG + chr6.3:18966812-18966831 None:intergenic 55.0%
! GATGCAGGGTAGCTCTGCAA+TGG + chr6.3:18967072-18967091 None:intergenic 55.0%
! TTCCTTTCGGTGCAGGGAGA+CGG - chr6.3:18966704-18966723 MS.gene47271:intron 55.0%
TTCCGTCTCCCTGCACCGAA+AGG + chr6.3:18966709-18966728 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 18965222 18967326 18965222 ID=MS.gene47271
chr6.3 mRNA 18965222 18967326 18965222 ID=MS.gene47271.t1;Parent=MS.gene47271
chr6.3 exon 18967261 18967326 18967261 ID=MS.gene47271.t1.exon1;Parent=MS.gene47271.t1
chr6.3 CDS 18967261 18967326 18967261 ID=cds.MS.gene47271.t1;Parent=MS.gene47271.t1
chr6.3 exon 18965222 18966154 18965222 ID=MS.gene47271.t1.exon2;Parent=MS.gene47271.t1
chr6.3 CDS 18965222 18966154 18965222 ID=cds.MS.gene47271.t1;Parent=MS.gene47271.t1
Gene Sequence

>MS.gene47271

ATGTGTGTTAAAGATTTTAGTATCATGCTCTTTGGAAAGAAGATTCAGGCCAACTCTTCAACCATGGTAAGTTATCATATCTTATATCACACTCAATAACCATTTTTCATGTTAATTTAGAAAGTTATGATTTAATTAGTTTGTTTGTCATGTTGTTAGAATATTTTATAAGCTTTAAAACCTTTAAAATTTGAAGAGTATTAATGCTAAATGATTTTATTTTTTAACATATTTATTTGGTAATAAAATTAAGAATGAATTCTAACAATTTTTTTTAAACTTATAGTTGAGAATTTATGTTTATGTCAAATACATACATAAATGAATTTAATAAATTGAGACTATGGTTTGTGAAGCTTCTGCAAGTAGTTGATTTTATATAGGAAAATATAGACAATATATTTGGTTCTTTTCTTCAAAGGGTAGCTTTGTTTCTTCTAATATCAAATAGGATTTATTACATTTTTTATACGAATCTATTTTTGTGAAATTGGGTTGTATCTGAAAGAAGTTTAACATGAAAGTTGTTTCATTTTGATTGAAGTATGTATTAAATCATACAATTGCTTGGTGCTCTTGTTTTTTTCAAGGCAATCATAAAATTCAAGCCTCTTAAAAATTTCTTAATTCTTTTGATTTTAAGTATATATTCAGTTGCTAAAAAAATACATATTCAGTTCAATTAATGCTTAATCAATTGCAAATAGATTTTTCTTTATAAATAGTATAATTTGTCTTGAATGGTGAAAGGCACGACACCATCATAATTTTGTTGAAACTCTAAAATATGTATATAATATAATATATAAGGCACGACACCATCATAATTTTGTTGAAACTCTAAAATATGTATATAATATAATATATCAAAGATTAATGACACATGAATAGAAAACAAACATCAACTAAGTTTTTTTAGGTGACAAAACCAATAATCGTAAACACGGTGACACGTGGTCATTCCACCAAAATCATCATGAATTATAGTTCTAATGGTTTGTACCATAAGGAATTTTATAGTTATTTTTTTATTTTTTTATGTGAAAATCGAACATAACATGCATGATGATTAATTGCATATGTTCCGTGATTTTGTTTTTTGAATATTCCAAAGTTTGTTGCCAAACTTTATTCTGGATAACTTATCACTAATTATGATTTATATTATATAGAATTCTTGCAGTAACTCAAAGCACAAAGGAAATGAAATGCCTCATATTCAAAACATTGAGAAATCAAAGAATTCTTCTAATGAAGAAAATGAATCAAAAGTTAACACAAGCACTGTGGAAGATAATATGGAAACTAGCAGCACAGATCAAGACAAAGTCCTCAAAAAACCTGACAAGATTGTTCAATGTCCAAGATGCAACAGTTTCAACACGAAATTTTGTTATTTCAATAACTACAATGTCAGTCAACCTCGGCATTTTTGTCGGAAGTGTCATAGATATTGGACTGCCGGTGGAACAATGAGAAACGTTCCTTTCGGTGCAGGGAGACGGAAGAACAAGCAGATAGCTTCTCAATATCGCCACATGATTGTAGCTTCCGGTGGAATTTCAACCTCAAATTTTGAAAGCAACGCCTCTTCTACCGAATCTGCTGCGGTTTTTAGGTGCTCAAGTAATAATGGTATTGTCATAAAATTTGGTCTGGAAAATGCATCTCTCCATGAATCTAACAATTCGATGTTCAATCCTAGAAACGATAAGAGAAATATTGATGCAAGTGCTAACAATTATAGAGAAAATGGGGATGAAGAATCATCGTTATGTGTATCTTCTGTGACAAACGGTTATACTCGAGGAAACAAGTTATCCGAATCTGAACATAATAGGTCAAAACCATTGCAGAGCTACCCTGCATCTTCATGGATGATTCCATTGAATCAAAGCTTGAACAATGTTCCTTCCATGGTTCAATCTTCAATGCAGATGTGTAACCCTTATGACGTTGATCCTAGTTCAATGCAGTGGTACCATATGCCGAACATTTTCAGACCAAACATTGGCTTGCAATTTGTCCCTGAATCATTTAGGAATGGATCAGTTTCAATAGGTTCAAATAATTGTATTTCGTCTTCTTCATCTATTACTAGCTAG
Protein sequence

>MS.gene47271.t1

MCVKDFSIMLFGKKIQANSSTMNSCSNSKHKGNEMPHIQNIEKSKNSSNEENESKVNTSTVEDNMETSSTDQDKVLKKPDKIVQCPRCNSFNTKFCYFNNYNVSQPRHFCRKCHRYWTAGGTMRNVPFGAGRRKNKQIASQYRHMIVASGGISTSNFESNASSTESAAVFRCSSNNGIVIKFGLENASLHESNNSMFNPRNDKRNIDASANNYRENGDEESSLCVSSVTNGYTRGNKLSESEHNRSKPLQSYPASSWMIPLNQSLNNVPSMVQSSMQMCNPYDVDPSSMQWYHMPNIFRPNIGLQFVPESFRNGSVSIGSNNCISSSSSITS