AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47298

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47298.t1 MTR_6g027690 79.752 484 35 6 1 481 1 424 0.0 657
MS.gene47298.t1 MTR_5g018850 33.520 179 116 3 299 476 1330 1506 1.18e-18 90.1
MS.gene47298.t1 MTR_7g098390 34.161 161 98 4 298 454 519 675 1.30e-18 89.4
MS.gene47298.t1 MTR_4g132610 36.111 180 110 4 299 476 870 1046 1.74e-18 89.4
MS.gene47298.t1 MTR_1g069570 31.875 160 103 3 298 454 563 719 2.09e-18 89.0
MS.gene47298.t1 MTR_8g078490 33.333 180 115 4 299 476 1076 1252 5.85e-18 87.8
MS.gene47298.t1 MTR_1g080340 34.146 164 95 4 298 454 402 559 3.22e-17 84.7
MS.gene47298.t1 MTR_7g088370 32.432 185 118 5 298 476 521 704 4.24e-17 84.7
MS.gene47298.t1 MTR_3g088625 34.444 180 100 8 299 476 1195 1358 5.27e-17 85.1
MS.gene47298.t1 MTR_3g088625 34.444 180 100 8 299 476 1301 1464 5.55e-17 84.7
MS.gene47298.t1 MTR_8g078505 33.951 162 90 5 299 453 364 515 8.27e-17 83.6
MS.gene47298.t1 MTR_5g013420 32.338 201 107 8 299 476 894 1088 2.93e-16 82.4
MS.gene47298.t1 MTR_5g013420 32.338 201 107 8 299 476 894 1088 4.36e-16 81.6
MS.gene47298.t1 MTR_1g035420 26.697 221 136 6 273 468 440 659 2.22e-15 79.3
MS.gene47298.t1 MTR_4g010830 30.348 201 111 7 299 476 785 979 3.47e-15 79.0
MS.gene47298.t1 MTR_1g098000 30.769 182 95 6 286 453 47 211 2.88e-14 75.5
MS.gene47298.t1 MTR_1g098370 30.055 183 97 6 286 454 50 215 7.04e-14 73.9
MS.gene47298.t1 MTR_1g069570 35.043 117 72 2 298 413 563 676 1.35e-13 73.6
MS.gene47298.t1 MTR_8g070070 28.182 220 131 9 273 467 551 768 3.72e-13 72.4
MS.gene47298.t1 MTR_0071s0100 29.358 218 121 10 264 479 165 351 5.20e-13 70.9
MS.gene47298.t1 MTR_1g012890 30.128 156 91 6 325 476 226 367 9.72e-13 70.1
MS.gene47298.t1 MTR_4g010550 29.688 192 108 6 299 476 285 463 1.51e-12 69.7
MS.gene47298.t1 MTR_6g059310 28.037 214 127 8 273 479 63 256 2.90e-12 68.2
MS.gene47298.t1 MTR_6g059310 28.037 214 127 8 273 479 63 256 3.08e-12 68.2
MS.gene47298.t1 MTR_1g035400 27.404 208 123 7 275 456 361 566 5.57e-12 68.6
MS.gene47298.t1 MTR_1g048950 29.741 232 124 10 272 481 323 537 9.78e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47298.t1 AT3G03750 59.556 225 79 4 268 481 131 354 1.40e-79 252
MS.gene47298.t1 AT3G03750 31.618 136 78 3 12 137 16 146 2.20e-13 72.0
MS.gene47298.t1 AT3G03750 55.111 225 73 5 268 481 131 338 3.14e-68 222
MS.gene47298.t1 AT3G03750 31.618 136 78 3 12 137 16 146 1.90e-13 72.0
MS.gene47298.t1 AT1G04050 33.951 162 100 3 295 454 436 592 7.24e-20 93.2
MS.gene47298.t1 AT1G04050 33.951 162 100 3 295 454 540 696 1.41e-19 92.4
MS.gene47298.t1 AT1G04050 33.951 162 100 3 295 454 540 696 1.41e-19 92.4
MS.gene47298.t1 AT2G23740 33.514 185 111 5 299 476 1195 1374 2.51e-18 89.0
MS.gene47298.t1 AT2G23740 33.514 185 111 5 299 476 1202 1381 2.66e-18 89.0
MS.gene47298.t1 AT2G23740 33.514 185 111 5 299 476 1202 1381 2.66e-18 89.0
MS.gene47298.t1 AT2G23740 33.514 185 111 5 299 476 1202 1381 2.66e-18 89.0
MS.gene47298.t1 AT3G04380 31.720 186 109 6 298 472 252 430 2.56e-17 84.7
MS.gene47298.t1 AT3G04380 32.044 181 115 4 298 472 252 430 2.79e-17 84.7
MS.gene47298.t1 AT3G04380 32.044 181 115 4 298 472 236 414 2.93e-17 84.3
MS.gene47298.t1 AT3G04380 31.720 186 109 6 298 472 279 457 3.02e-17 84.7
MS.gene47298.t1 AT3G04380 31.720 186 109 6 298 472 279 457 3.16e-17 84.7
MS.gene47298.t1 AT3G04380 32.044 181 115 4 298 472 263 441 3.93e-17 84.3
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 458 610 1.43e-16 83.2
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 458 610 1.43e-16 83.2
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 458 610 1.43e-16 83.2
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 458 610 1.43e-16 83.2
MS.gene47298.t1 AT1G73100 30.000 240 130 10 274 476 430 668 1.74e-16 82.8
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 438 590 1.76e-16 82.8
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 527 679 2.84e-16 82.0
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 527 679 2.84e-16 82.0
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 527 679 2.84e-16 82.0
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 527 679 2.84e-16 82.0
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 550 702 2.90e-16 82.0
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 550 702 2.90e-16 82.0
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 530 682 3.16e-16 82.0
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 530 682 3.16e-16 82.0
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 507 659 3.47e-16 82.0
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 507 659 3.47e-16 82.0
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 507 659 3.47e-16 82.0
MS.gene47298.t1 AT5G43990 31.447 159 101 3 298 454 507 659 3.47e-16 82.0
MS.gene47298.t1 AT2G33290 28.182 220 129 7 275 468 435 651 3.84e-15 78.6
MS.gene47298.t1 AT2G33290 28.182 220 129 7 275 468 435 651 3.84e-15 78.6
MS.gene47298.t1 AT2G33290 28.182 220 129 7 275 468 435 651 3.84e-15 78.6
MS.gene47298.t1 AT2G33290 28.182 220 129 7 275 468 435 651 3.84e-15 78.6
MS.gene47298.t1 AT2G35160 27.234 235 133 8 258 476 581 793 5.56e-15 78.2
MS.gene47298.t1 AT2G35160 27.234 235 133 8 258 476 581 793 5.56e-15 78.2
MS.gene47298.t1 AT2G35160 27.234 235 133 8 258 476 581 793 5.56e-15 78.2
MS.gene47298.t1 AT2G35160 27.234 235 133 8 258 476 581 793 5.56e-15 78.2
MS.gene47298.t1 AT2G35160 27.234 235 133 8 258 476 545 757 6.23e-15 78.2
MS.gene47298.t1 AT1G76710 30.726 179 107 5 299 476 66 228 1.68e-14 76.3
MS.gene47298.t1 AT1G76710 30.726 179 107 5 299 476 66 228 1.87e-14 75.9
MS.gene47298.t1 AT1G76710 30.726 179 107 5 299 476 66 228 1.87e-14 75.9
MS.gene47298.t1 AT4G13460 28.774 212 133 6 273 468 441 650 1.98e-14 76.3
MS.gene47298.t1 AT4G13460 28.774 212 133 6 273 468 441 650 1.98e-14 76.3
MS.gene47298.t1 AT1G76710 30.726 179 107 5 299 476 66 228 2.02e-14 75.9
MS.gene47298.t1 AT4G30860 28.049 246 140 11 243 476 244 464 4.74e-14 74.7
MS.gene47298.t1 AT5G04940 27.953 254 141 11 263 476 418 669 2.31e-13 72.8
MS.gene47298.t1 AT5G04940 27.953 254 141 11 263 476 418 669 2.31e-13 72.8
MS.gene47298.t1 AT2G22740 32.143 168 99 5 299 453 594 759 1.44e-12 70.5
MS.gene47298.t1 AT2G22740 32.143 168 99 5 299 453 594 759 1.44e-12 70.5
MS.gene47298.t1 AT5G42400 30.769 143 83 6 334 476 1261 1387 8.16e-12 68.6
MS.gene47298.t1 AT5G42400 30.769 143 83 6 334 476 1261 1387 8.16e-12 68.6
MS.gene47298.t1 AT5G42400 30.769 143 83 6 334 476 1261 1387 8.16e-12 68.6
MS.gene47298.t1 AT5G42400 30.769 143 83 6 334 476 1261 1387 8.16e-12 68.6
MS.gene47298.t1 AT5G42400 30.769 143 83 6 334 476 1261 1387 8.16e-12 68.6
MS.gene47298.t1 AT5G42400 30.769 143 83 6 334 476 1261 1387 8.16e-12 68.6
MS.gene47298.t1 AT5G42400 30.769 143 83 6 334 476 1261 1387 8.16e-12 68.6
MS.gene47298.t1 AT5G42400 30.769 143 83 6 334 476 1261 1387 8.16e-12 68.6

Find 157 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTTAGGTATGGTAGAATT+AGG 0.190335 6.4:-2854858 None:intergenic
AATGGGTCAGTGGGAGGTTG+TGG 0.204627 6.4:+2855183 MS.gene47298:CDS
TTTGAAGGTGTTTGTGATAA+TGG 0.215244 6.4:+2855165 MS.gene47298:CDS
TTTGGTGTTGGTTGTGAAAA+TGG 0.223430 6.4:+2855483 MS.gene47298:CDS
AGCACCCCATGATTGATAAT+TGG 0.228954 6.4:-2855082 None:intergenic
GATGGGTCTGTGGGAGATGG+TGG 0.241518 6.4:+2855399 MS.gene47298:CDS
ATGGGGTTTGTTTGCGAATC+AGG 0.258812 6.4:+2855770 MS.gene47298:CDS
GTCAAAATGGGGTTAATGTT+AGG 0.261254 6.4:+2855715 MS.gene47298:CDS
TCATCATCGTCAACCGTTCT+AGG 0.277286 6.4:-2855552 None:intergenic
GTGGGAGGGAGTGTGGTAAT+AGG 0.291477 6.4:+2855688 MS.gene47298:CDS
GGTAATAGGGTGAGTCAAAA+TGG 0.309553 6.4:+2855702 MS.gene47298:CDS
TGATGATTTGGGTGAGTTTA+CGG 0.314004 6.4:-2854921 None:intergenic
TGGACTATTCTCGAAGGTTC+TGG 0.314263 6.4:-2854968 None:intergenic
GGTGTGGTGGTGGGAAAGGA+TGG 0.325731 6.4:+2855751 MS.gene47298:CDS
GTGGGTTGGGTTGTTTATGT+GGG 0.337627 6.4:+2855670 MS.gene47298:CDS
AACATAGACGCAACAAGAAT+TGG 0.340854 6.4:+2857610 MS.gene47298:CDS
TGCGACGAAGGGTGATGATT+TGG 0.341064 6.4:-2854933 None:intergenic
GCACCCCATGATTGATAATT+GGG 0.342582 6.4:-2855081 None:intergenic
GGTTAGGTATGGTAGAATTA+GGG 0.344253 6.4:-2854857 None:intergenic
ATTGCTACTACTCGATTTCC+TGG 0.350453 6.4:-2854782 None:intergenic
GGGTCAGTGGGAGGTTGTGG+GGG 0.351533 6.4:+2855186 MS.gene47298:CDS
TGTGGGTTGGGTTGTTTATG+TGG 0.352457 6.4:+2855669 MS.gene47298:CDS
TGCAGCAGCCCTTCTTGCCT+TGG 0.352641 6.4:+2857817 MS.gene47298:CDS
GGGTCTGTGGGAGATGGTGG+GGG 0.359874 6.4:+2855402 MS.gene47298:CDS
TGGGTCTGTGGGAGATGGTG+GGG 0.360670 6.4:+2855401 MS.gene47298:CDS
TTGTTGATGGTGTTGAGAAA+TGG 0.363547 6.4:-2854994 None:intergenic
ATTGGAAGAGAGTGTGGGTT+GGG 0.372465 6.4:+2855657 MS.gene47298:CDS
ACGGAGTGATTTACATGTTA+AGG 0.372858 6.4:-2854902 None:intergenic
ATGGGTCAGTGGGAGGTTGT+GGG 0.374421 6.4:+2855184 MS.gene47298:CDS
TCGATCGCTCTAGGCGGAAT+TGG 0.374632 6.4:-2855441 None:intergenic
TTGAAGGTGTTTGTGATAAT+GGG 0.374671 6.4:+2855166 MS.gene47298:CDS
TGGCAAGTTGTGTGTGGGTT+AGG 0.379336 6.4:-2854873 None:intergenic
TGGGTCAGTGGGAGGTTGTG+GGG 0.384730 6.4:+2855185 MS.gene47298:CDS
TCATCATTGGGTGGTGGTGG+TGG 0.385071 6.4:-2855234 None:intergenic
TGGGAAGGTGGGAGGTGATG+GGG 0.385269 6.4:+2855503 MS.gene47298:CDS
AATGGGAAGGTGGGAGGTGA+TGG 0.388316 6.4:+2855501 MS.gene47298:CDS
GGGAAGGTGGGAGGTGATGG+GGG 0.389431 6.4:+2855504 MS.gene47298:CDS
TCAACCGTTCTAGGCGGAAT+TGG 0.392353 6.4:-2855543 None:intergenic
CGCATGAATGATTTACAAAC+CGG 0.393320 6.4:-2857642 None:intergenic
AATTCTGTCATTTCAGATGA+TGG 0.394308 6.4:+2855114 MS.gene47298:CDS
ATGGGTCTGTGGGAGATGGT+GGG 0.396576 6.4:+2855400 MS.gene47298:CDS
ATGTTAGGGTTAAGATTGTA+TGG 0.402236 6.4:+2855730 MS.gene47298:CDS
GATGATGAGTCGGTGAGTTT+TGG 0.402425 6.4:+2855567 MS.gene47298:CDS
TTTGATGGGGTTGATGGTAT+TGG 0.404345 6.4:+2855639 MS.gene47298:CDS
ACTCACTGACCCATCATCAT+TGG 0.404460 6.4:-2855247 None:intergenic
GTGTGGTGGTGGGAAAGGAT+GGG 0.406058 6.4:+2855752 MS.gene47298:CDS
TGTGGTGGTGGGAAAGGATG+GGG 0.412443 6.4:+2855753 MS.gene47298:CDS
GTAATAGGGTGAGTCAAAAT+GGG 0.414284 6.4:+2855703 MS.gene47298:CDS
AAGGTGTATGTGATGATGGT+GGG 0.415438 6.4:+2855286 MS.gene47298:CDS
ATTCCTCCGGTTGATGAAGT+TGG 0.418301 6.4:+2855330 MS.gene47298:CDS
TGGGAGGGAGTGTGGTAATA+GGG 0.418711 6.4:+2855689 MS.gene47298:CDS
GTGTAGAGAAAGTAGGAGTA+AGG 0.418816 6.4:-2855030 None:intergenic
AAGATTGTATGGTGTGGTGG+TGG 0.420334 6.4:+2855741 MS.gene47298:CDS
GATGATGGGTCAGTGAGTTT+TGG 0.420958 6.4:+2855252 MS.gene47298:CDS
TTCCTCCGGTTGATGAAGTT+GGG 0.424925 6.4:+2855331 MS.gene47298:CDS
TGTTTATGTGGGAGGGAGTG+TGG 0.424996 6.4:+2855681 MS.gene47298:CDS
TGTTGATGGTGTTGAGAAAT+GGG 0.426613 6.4:-2854993 None:intergenic
CAAGAATTGGAAACGTTGCC+CGG 0.432187 6.4:+2857623 MS.gene47298:CDS
TCATTGGGTGGTGGTGGTGG+TGG 0.432692 6.4:-2855231 None:intergenic
TCAAAATGGGGTTAATGTTA+GGG 0.434140 6.4:+2855716 MS.gene47298:CDS
GAAGTTGGGCCGGTGAGTTT+TGG 0.436292 6.4:+2855345 MS.gene47298:CDS
CCATCATCATTGGGTGGTGG+TGG 0.438060 6.4:-2855237 None:intergenic
ACAACAACATTATGATGAAC+TGG 0.439102 6.4:+2857510 MS.gene47298:CDS
CCACCACCACCCAATGATGA+TGG 0.443523 6.4:+2855237 MS.gene47298:CDS
GTTGGGTTGTTTATGTGGGA+GGG 0.444408 6.4:+2855674 MS.gene47298:CDS
ATGGGAAGGTGGGAGGTGAT+GGG 0.449835 6.4:+2855502 MS.gene47298:CDS
GATGATGGGTCGGTGAGATT+TGG 0.451262 6.4:+2855129 MS.gene47298:CDS
AGTAATTTCACTAATTCCTC+CGG 0.452228 6.4:+2855317 MS.gene47298:CDS
ACCGGCCCAACTTCATCAAC+CGG 0.453006 6.4:-2855336 None:intergenic
GATGATGGATCGGTGAGATT+TGG 0.454702 6.4:+2855465 MS.gene47298:CDS
GCGACGAAGGGTGATGATTT+GGG 0.460306 6.4:-2854932 None:intergenic
TGAAGGTGTGTAGAGAAAGT+AGG 0.466495 6.4:-2855037 None:intergenic
GTATGGTGTGGTGGTGGGAA+AGG 0.470460 6.4:+2855747 MS.gene47298:CDS
ACAAAGCTAGTCAGAAGTAC+AGG 0.473427 6.4:+2857682 MS.gene47298:CDS
TTTCAAGGTGTATGTGATGA+TGG 0.478220 6.4:+2855381 MS.gene47298:CDS
CTCAAACATGCCTTTCCTGA+TGG 0.478841 6.4:-2857583 None:intergenic
GATGATGGGTCTGTGGGAGA+TGG 0.479549 6.4:+2855396 MS.gene47298:CDS
GGTTGGGTTGTTTATGTGGG+AGG 0.481940 6.4:+2855673 MS.gene47298:CDS
GCAGTGACACAGCCGCCCAT+TGG 0.484176 6.4:-2857797 None:intergenic
GTAAGGGAACATCTTCCATC+AGG 0.484888 6.4:+2857568 MS.gene47298:CDS
GATTTCCTGGGAATCTTCAT+CGG 0.485473 6.4:-2854769 None:intergenic
TTGGTGTTGGTTGTGAAAAT+GGG 0.487055 6.4:+2855484 MS.gene47298:CDS
CCATCATCATCGATCGCTCT+AGG 0.487815 6.4:-2855450 None:intergenic
TAGAGAAAGTAGGAGTAAGG+AGG 0.488395 6.4:-2855027 None:intergenic
GAGTTCTTGTTTCAATATGC+AGG 0.491591 6.4:+2855807 MS.gene47298:CDS
TTTACATGTTAAGGAGATGT+TGG 0.491846 6.4:-2854893 None:intergenic
CTCACTGACCCATCATCATT+GGG 0.494642 6.4:-2855246 None:intergenic
TCCGGTTGATGAAGTTGGGC+CGG 0.504618 6.4:+2855335 MS.gene47298:CDS
AGAGAAAGTAGGAGTAAGGA+GGG 0.510073 6.4:-2855026 None:intergenic
AACTTTCAAGTGTCTTCTGA+GGG 0.512350 6.4:-2857847 None:intergenic
CAACTTTCAAGTGTCTTCTG+AGG 0.513305 6.4:-2857848 None:intergenic
AATTATCAATCATGGGGTGC+TGG 0.513455 6.4:+2855084 MS.gene47298:CDS
GAATCAGGTTGTTCGTAAAG+AGG 0.515528 6.4:+2855785 MS.gene47298:CDS
GGCAATGTTCCAAGGCAAGA+AGG 0.521194 6.4:-2857826 None:intergenic
ATTCTGTCATTTCAGATGAT+GGG 0.526380 6.4:+2855115 MS.gene47298:CDS
CAATCATGGGGTGCTGGAGA+GGG 0.536498 6.4:+2855090 MS.gene47298:CDS
TCAATCATGGGGTGCTGGAG+AGG 0.538735 6.4:+2855089 MS.gene47298:CDS
TGTGAAGGTGTATGTGATGA+TGG 0.541227 6.4:+2855282 MS.gene47298:CDS
CCTAGAGCGATCGATGATGA+TGG 0.545116 6.4:+2855450 MS.gene47298:CDS
TGGTTGTGAAAATGGGAAGG+TGG 0.545226 6.4:+2855491 MS.gene47298:CDS
TTGTCTCCTCTGTGCTTCTG+TGG 0.546997 6.4:-2857491 None:intergenic
GGTTGTGAAAATGGGAAGGT+GGG 0.549690 6.4:+2855492 MS.gene47298:CDS
AGTTGTGTGTGGGTTAGGTA+TGG 0.551401 6.4:-2854868 None:intergenic
TTTGTAAATCATTCATGCGA+TGG 0.552323 6.4:+2857646 MS.gene47298:CDS
GTTAAGATTGTATGGTGTGG+TGG 0.553358 6.4:+2855738 MS.gene47298:CDS
GGATCGGTGAGATTTGGTGT+TGG 0.554300 6.4:+2855471 MS.gene47298:CDS
TTCACCAATTCCGCCTAGAA+CGG 0.555345 6.4:+2855539 MS.gene47298:CDS
CCACACCGATGAAGATTCCC+AGG 0.559732 6.4:+2854764 None:intergenic
ATGGTGTTGAGAAATGGGAT+TGG 0.561886 6.4:-2854988 None:intergenic
AGATGTTGGCAAGTTGTGTG+TGG 0.562457 6.4:-2854879 None:intergenic
GCAATGTTCCAAGGCAAGAA+GGG 0.567672 6.4:-2857825 None:intergenic
CTCGAAGGTTCTGGAAGCGT+CGG 0.570963 6.4:-2854959 None:intergenic
GTTTGTGATAATGGGTCAGT+GGG 0.571580 6.4:+2855174 MS.gene47298:CDS
GAAGGTGTATGTGATGATGG+TGG 0.577633 6.4:+2855285 MS.gene47298:CDS
TGTGATAATGGGTCAGTGGG+AGG 0.578136 6.4:+2855177 MS.gene47298:CDS
CACCACCACCCAATGATGAT+GGG 0.581008 6.4:+2855238 MS.gene47298:CDS
AGGTGTATGTGATGATGGTG+GGG 0.581502 6.4:+2855287 MS.gene47298:CDS
ATGGTATTGGAAGAGAGTGT+GGG 0.581994 6.4:+2855652 MS.gene47298:CDS
TGTGAAAATGGGAAGGTGGG+AGG 0.582238 6.4:+2855495 MS.gene47298:CDS
TATTGGAAGAGAGTGTGGGT+TGG 0.583102 6.4:+2855656 MS.gene47298:CDS
GATGGTATTGGAAGAGAGTG+TGG 0.584769 6.4:+2855651 MS.gene47298:CDS
GTATGTGATGATGGGTCTGT+GGG 0.586844 6.4:+2855390 MS.gene47298:CDS
GACCCATCATCATTGGGTGG+TGG 0.588319 6.4:-2855240 None:intergenic
AGGGTTAAGATTGTATGGTG+TGG 0.589173 6.4:+2855735 MS.gene47298:CDS
CTTCTGAGGGCAATGTTCCA+AGG 0.591471 6.4:-2857834 None:intergenic
AGATTGTATGGTGTGGTGGT+GGG 0.598218 6.4:+2855742 MS.gene47298:CDS
GTAAATCATTCATGCGATGG+TGG 0.599638 6.4:+2857649 MS.gene47298:CDS
TGTATGTGATGATGGGTCTG+TGG 0.599715 6.4:+2855389 MS.gene47298:CDS
GATGTTGGCAAGTTGTGTGT+GGG 0.600318 6.4:-2854878 None:intergenic
TTCAAGGTGTATGTGATGAT+GGG 0.600792 6.4:+2855382 MS.gene47298:CDS
AACGGTTGACGATGATGAGT+CGG 0.604298 6.4:+2855557 MS.gene47298:CDS
TTGCTACTACTCGATTTCCT+GGG 0.606210 6.4:-2854781 None:intergenic
AGCGATCGATGATGATGGAT+CGG 0.610413 6.4:+2855455 MS.gene47298:CDS
CACCCCATGATTGATAATTG+GGG 0.614033 6.4:-2855080 None:intergenic
AGCGTCGGAGATGCGACGAA+GGG 0.615193 6.4:-2854944 None:intergenic
TATGATGAACTGGCATCGCG+TGG 0.618128 6.4:+2857520 MS.gene47298:CDS
GGAACATCTTCCATCAGGAA+AGG 0.618170 6.4:+2857573 MS.gene47298:CDS
AAGCGTCGGAGATGCGACGA+AGG 0.618413 6.4:-2854945 None:intergenic
TGTCATTTCAGATGATGGGT+CGG 0.619359 6.4:+2855119 MS.gene47298:CDS
TGTTGGTTGTGAAAATGGGA+AGG 0.619618 6.4:+2855488 MS.gene47298:CDS
GGTGTATGTGATGATGGTGG+GGG 0.621180 6.4:+2855288 MS.gene47298:CDS
GAAGCAAAGAAGCAAAGGCG+AGG 0.623414 6.4:-2857715 None:intergenic
AAGCAAAGAAGCAAAGGCGA+GGG 0.631296 6.4:-2857714 None:intergenic
TGGGATTGGACTATTCTCGA+AGG 0.643563 6.4:-2854974 None:intergenic
GGTGTGGGATGTGAATGTGA+AGG 0.645385 6.4:+2855588 MS.gene47298:CDS
CATCCAACACCAAAACTCAC+CGG 0.646120 6.4:-2855354 None:intergenic
AGGAAATCGAGTAGTAGCAA+TGG 0.649367 6.4:+2854784 MS.gene47298:CDS
TAATAGGGTGAGTCAAAATG+GGG 0.652968 6.4:+2855704 MS.gene47298:CDS
ACCCCATGATTGATAATTGG+GGG 0.668281 6.4:-2855079 None:intergenic
GCATGAATGATTTACAAACC+GGG 0.668682 6.4:-2857641 None:intergenic
TGTTTGTGATAATGGGTCAG+TGG 0.672547 6.4:+2855173 MS.gene47298:CDS
TCATCGTCAACCGTTCTAGG+CGG 0.674847 6.4:-2855549 None:intergenic
TCATCATCGATCGCTCTAGG+CGG 0.687513 6.4:-2855447 None:intergenic
ACTGACCCATCATCATTGGG+TGG 0.691898 6.4:-2855243 None:intergenic
TTGTGAGACAGAATGAGTGA+AGG 0.699544 6.4:-2855054 None:intergenic
GGCCCAACTTCATCAACCGG+AGG 0.702212 6.4:-2855333 None:intergenic
TGACAACCACAGAAGCACAG+AGG 0.762571 6.4:+2857485 MS.gene47298:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATTTTGTATTTAATTTTT+AGG + chr6.4:2856275-2856294 MS.gene47298:intron 10.0%
!! ATGTAAAAAAATTACTTTCT+AGG + chr6.4:2856759-2856778 MS.gene47298:intron 15.0%
!!! GATCAATTCTAAAATTTTAA+TGG - chr6.4:2856060-2856079 None:intergenic 15.0%
!!! TGAATTTAAGTTAGTATATA+AGG + chr6.4:2856928-2856947 MS.gene47298:intron 15.0%
!!! TTGATATTTTGACTAATATA+GGG + chr6.4:2856956-2856975 MS.gene47298:intron 15.0%
!!! TTTGATATTTTGACTAATAT+AGG + chr6.4:2856955-2856974 MS.gene47298:intron 15.0%
!! AAACTTAATATTTCACTCAA+GGG - chr6.4:2856646-2856665 None:intergenic 20.0%
!! AATCCATAATATAAACTACT+TGG + chr6.4:2856900-2856919 MS.gene47298:intron 20.0%
!! ATCTTAACAAGCTAATAATT+AGG - chr6.4:2856695-2856714 None:intergenic 20.0%
!! TCTTAACAAGCTAATAATTA+GGG - chr6.4:2856694-2856713 None:intergenic 20.0%
!! TTATCAAATATGAGTCTATT+TGG + chr6.4:2857027-2857046 MS.gene47298:intron 20.0%
!!! AATAAGTTGAAAACAACTTA+TGG - chr6.4:2857123-2857142 None:intergenic 20.0%
! AGTCCAAGTAGTTTATATTA+TGG - chr6.4:2856906-2856925 None:intergenic 25.0%
! ATGATAAACCAGAAAATACT+TGG - chr6.4:2856483-2856502 None:intergenic 25.0%
! CAAACTTAATATTTCACTCA+AGG - chr6.4:2856647-2856666 None:intergenic 25.0%
! CAAATTGCAATATGTTAAGT+AGG + chr6.4:2856868-2856887 MS.gene47298:intron 25.0%
! GTGATTGTTTGATTGATTAT+AGG + chr6.4:2855862-2855881 MS.gene47298:intron 25.0%
! TGATTATAGGATTGTAACAT+TGG + chr6.4:2855875-2855894 MS.gene47298:intron 25.0%
!! AATTTTACAAGCATTTGTGT+GGG - chr6.4:2857432-2857451 None:intergenic 25.0%
!! CTTTAGTTCATATGCATATA+TGG - chr6.4:2857294-2857313 None:intergenic 25.0%
!! TAATTTTACAAGCATTTGTG+TGG - chr6.4:2857433-2857452 None:intergenic 25.0%
!!! AGTGTATGTGTTTTTTTGAT+GGG + chr6.4:2855625-2855644 MS.gene47298:CDS 25.0%
!!! GTATTTTCTGGTTTATCATA+TGG + chr6.4:2856484-2856503 MS.gene47298:intron 25.0%
!!! TTATTAGCTTGTTAAGATGA+CGG + chr6.4:2856697-2856716 MS.gene47298:intron 25.0%
!!! TTTAGTTGTGTTTTTATGCA+TGG + chr6.4:2857393-2857412 MS.gene47298:intron 25.0%
!!! TTTGTTTTCATAAGCTGTTT+CGG - chr6.4:2857158-2857177 None:intergenic 25.0%
!!! TTTTAGAATTGATCCGAATT+CGG + chr6.4:2856066-2856085 MS.gene47298:intron 25.0%
AAATCAGGAAAAAGTCCAAT+GGG + chr6.4:2857782-2857801 MS.gene47298:CDS 30.0%
ACAACAACATTATGATGAAC+TGG + chr6.4:2857510-2857529 MS.gene47298:CDS 30.0%
AGTAATTTCACTAATTCCTC+CGG + chr6.4:2855317-2855336 MS.gene47298:CDS 30.0%
ATGCTTGTAAAATTAATCCG+CGG + chr6.4:2857438-2857457 MS.gene47298:intron 30.0%
ATGTTAGGGTTAAGATTGTA+TGG + chr6.4:2855730-2855749 MS.gene47298:CDS 30.0%
ATTTGTTCTACTTGAGAATG+TGG - chr6.4:2856587-2856606 None:intergenic 30.0%
GACTAATATAGGGAATTGAA+AGG + chr6.4:2856966-2856985 MS.gene47298:intron 30.0%
TATAGTAGGAACATGTCTTT+GGG + chr6.4:2856810-2856829 MS.gene47298:intron 30.0%
TCAAAATGGGGTTAATGTTA+GGG + chr6.4:2855716-2855735 MS.gene47298:CDS 30.0%
TTAATATTTCACTCAAGGGA+AGG - chr6.4:2856642-2856661 None:intergenic 30.0%
TTTACATGTTAAGGAGATGT+TGG - chr6.4:2854896-2854915 None:intergenic 30.0%
TTTGTAAATCATTCATGCGA+TGG + chr6.4:2857646-2857665 MS.gene47298:CDS 30.0%
! AATTCTGTCATTTCAGATGA+TGG + chr6.4:2855114-2855133 MS.gene47298:CDS 30.0%
! ATCTGCTCTTTTAGTAGTAA+GGG + chr6.4:2857552-2857571 MS.gene47298:CDS 30.0%
! ATTCTGTCATTTCAGATGAT+GGG + chr6.4:2855115-2855134 MS.gene47298:CDS 30.0%
! ATTTTACAAGCATTTGTGTG+GGG - chr6.4:2857431-2857450 None:intergenic 30.0%
! CATCAGATTATTCACGTTTT+TGG - chr6.4:2856390-2856409 None:intergenic 30.0%
! TTTGCTATGTTAAGGTGATT+GGG + chr6.4:2857350-2857369 MS.gene47298:intron 30.0%
!! AATTGATTTGAACTTGAACG+TGG + chr6.4:2855931-2855950 MS.gene47298:intron 30.0%
!! TTGAAGGTGTTTGTGATAAT+GGG + chr6.4:2855166-2855185 MS.gene47298:CDS 30.0%
!! TTTGAAGGTGTTTGTGATAA+TGG + chr6.4:2855165-2855184 MS.gene47298:CDS 30.0%
!!! GAGTGTATGTGTTTTTTTGA+TGG + chr6.4:2855624-2855643 MS.gene47298:CDS 30.0%
!!! GTGTATGTGTTTTTTTGATG+GGG + chr6.4:2855626-2855645 MS.gene47298:CDS 30.0%
!!! GTGTTTTTGTGTTTTAGAGT+TGG + chr6.4:2856024-2856043 MS.gene47298:intron 30.0%
AACATAGACGCAACAAGAAT+TGG + chr6.4:2857610-2857629 MS.gene47298:CDS 35.0%
ACGGAGTGATTTACATGTTA+AGG - chr6.4:2854905-2854924 None:intergenic 35.0%
CGCATGAATGATTTACAAAC+CGG - chr6.4:2857645-2857664 None:intergenic 35.0%
CTATAGTAGGAACATGTCTT+TGG + chr6.4:2856809-2856828 MS.gene47298:intron 35.0%
GAAATCAGGAAAAAGTCCAA+TGG + chr6.4:2857781-2857800 MS.gene47298:CDS 35.0%
GAAATCATAACGTGCTTGTT+TGG + chr6.4:2856119-2856138 MS.gene47298:intron 35.0%
GCATGAATGATTTACAAACC+GGG - chr6.4:2857644-2857663 None:intergenic 35.0%
GGTTAGGTATGGTAGAATTA+GGG - chr6.4:2854860-2854879 None:intergenic 35.0%
GTAATAGGGTGAGTCAAAAT+GGG + chr6.4:2855703-2855722 MS.gene47298:CDS 35.0%
GTCAAAATGGGGTTAATGTT+AGG + chr6.4:2855715-2855734 MS.gene47298:CDS 35.0%
GTGCTTGTTTGGATATATGT+TGG + chr6.4:2856130-2856149 MS.gene47298:intron 35.0%
TAATAGGGTGAGTCAAAATG+GGG + chr6.4:2855704-2855723 MS.gene47298:CDS 35.0%
TGGCAATTGAAAATGTACAG+TGG - chr6.4:2856610-2856629 None:intergenic 35.0%
TTCAAGGTGTATGTGATGAT+GGG + chr6.4:2855382-2855401 MS.gene47298:CDS 35.0%
TTGAACTTGAACGTGGAATT+TGG + chr6.4:2855938-2855957 MS.gene47298:intron 35.0%
TTTCAAGGTGTATGTGATGA+TGG + chr6.4:2855381-2855400 MS.gene47298:CDS 35.0%
! AAGCAAGCTCTTCATCTTTT+TGG - chr6.4:2857750-2857769 None:intergenic 35.0%
! AATTGATTTCGCCTTCTATG+TGG - chr6.4:2856846-2856865 None:intergenic 35.0%
! ACCAGAAAATACTTGGTGAT+CGG - chr6.4:2856476-2856495 None:intergenic 35.0%
! ATTGATTTCGCCTTCTATGT+GGG - chr6.4:2856845-2856864 None:intergenic 35.0%
! CATCTGCTCTTTTAGTAGTA+AGG + chr6.4:2857551-2857570 MS.gene47298:CDS 35.0%
! GAGTTCTTGTTTCAATATGC+AGG + chr6.4:2855807-2855826 MS.gene47298:CDS 35.0%
! TATGCATATATGGCTCTGTT+TGG - chr6.4:2857284-2857303 None:intergenic 35.0%
! TGATGATTTGGGTGAGTTTA+CGG - chr6.4:2854924-2854943 None:intergenic 35.0%
! TTGTTAAGATGACGGTCTAT+AGG + chr6.4:2856705-2856724 MS.gene47298:intron 35.0%
!! CTTTTAGCTATGGAGAAATC+AGG + chr6.4:2857767-2857786 MS.gene47298:CDS 35.0%
!! GGGAGGTTTTATACTATAGT+AGG + chr6.4:2856796-2856815 MS.gene47298:intron 35.0%
!! GGTGTTGGATGTAATTTTCA+AGG + chr6.4:2855366-2855385 MS.gene47298:CDS 35.0%
!! GTTTGCTATGTTAAGGTGAT+TGG + chr6.4:2857349-2857368 MS.gene47298:intron 35.0%
!! TCTAGGTGCTCTAAGAAATT+GGG + chr6.4:2856776-2856795 MS.gene47298:intron 35.0%
!! TGTTGATGGTGTTGAGAAAT+GGG - chr6.4:2854996-2855015 None:intergenic 35.0%
!! TTCTAGGTGCTCTAAGAAAT+TGG + chr6.4:2856775-2856794 MS.gene47298:intron 35.0%
!! TTGATAATGTCACCATCTCA+GGG - chr6.4:2857014-2857033 None:intergenic 35.0%
!! TTGGTGTTGGTTGTGAAAAT+GGG + chr6.4:2855484-2855503 MS.gene47298:CDS 35.0%
!! TTGTTGATGGTGTTGAGAAA+TGG - chr6.4:2854997-2855016 None:intergenic 35.0%
!! TTTGATAATGTCACCATCTC+AGG - chr6.4:2857015-2857034 None:intergenic 35.0%
!! TTTGGTGTTGGTTGTGAAAA+TGG + chr6.4:2855483-2855502 MS.gene47298:CDS 35.0%
!!! CTTTTGAAGCAAAGAAGCAA+AGG - chr6.4:2857723-2857742 None:intergenic 35.0%
!!! GGTGTTGATTGTGATTTTGA+AGG + chr6.4:2855150-2855169 MS.gene47298:CDS 35.0%
!!! TGTTTTTTTGATGGGGTTGA+TGG + chr6.4:2855633-2855652 MS.gene47298:CDS 35.0%
AACTTGAACGTGGAATTTGG+AGG + chr6.4:2855941-2855960 MS.gene47298:intron 40.0%
AATTATCAATCATGGGGTGC+TGG + chr6.4:2855084-2855103 MS.gene47298:CDS 40.0%
ACACCCCCAATTATCAATCA+TGG + chr6.4:2855076-2855095 MS.gene47298:CDS 40.0%
ACCCCCAATTATCAATCATG+GGG + chr6.4:2855078-2855097 MS.gene47298:CDS 40.0%
ACCTTAACATAGCAAACACC+AGG - chr6.4:2857346-2857365 None:intergenic 40.0%
AGAGAAAGTAGGAGTAAGGA+GGG - chr6.4:2855029-2855048 None:intergenic 40.0%
AGGAAATCGAGTAGTAGCAA+TGG + chr6.4:2854784-2854803 MS.gene47298:CDS 40.0%
AGGGTTAAGATTGTATGGTG+TGG + chr6.4:2855735-2855754 MS.gene47298:CDS 40.0%
ATTGCTACTACTCGATTTCC+TGG - chr6.4:2854785-2854804 None:intergenic 40.0%
CACCCCCAATTATCAATCAT+GGG + chr6.4:2855077-2855096 MS.gene47298:CDS 40.0%
CTAAATTCCAGCTCCGAATT+CGG - chr6.4:2856082-2856101 None:intergenic 40.0%
GAATCATACCAACACGTTGT+TGG - chr6.4:2856525-2856544 None:intergenic 40.0%
GATTGATAGAAACTACCTCC+TGG + chr6.4:2857325-2857344 MS.gene47298:intron 40.0%
GGGTTAGGTATGGTAGAATT+AGG - chr6.4:2854861-2854880 None:intergenic 40.0%
GGTAATAGGGTGAGTCAAAA+TGG + chr6.4:2855702-2855721 MS.gene47298:CDS 40.0%
GTAAATCATTCATGCGATGG+TGG + chr6.4:2857649-2857668 MS.gene47298:CDS 40.0%
GTGTAGAGAAAGTAGGAGTA+AGG - chr6.4:2855033-2855052 None:intergenic 40.0%
GTTAAGATTGTATGGTGTGG+TGG + chr6.4:2855738-2855757 MS.gene47298:CDS 40.0%
TAGAGAAAGTAGGAGTAAGG+AGG - chr6.4:2855030-2855049 None:intergenic 40.0%
TCAAGGGAAGGTTGTCAAAA+TGG - chr6.4:2856630-2856649 None:intergenic 40.0%
TTAACATAGCAAACACCAGG+AGG - chr6.4:2857343-2857362 None:intergenic 40.0%
TTGCTACTACTCGATTTCCT+GGG - chr6.4:2854784-2854803 None:intergenic 40.0%
TTGTGAGACAGAATGAGTGA+AGG - chr6.4:2855057-2855076 None:intergenic 40.0%
! ACAAAGCTAGTCAGAAGTAC+AGG + chr6.4:2857682-2857701 MS.gene47298:CDS 40.0%
! ACCCCATGATTGATAATTGG+GGG - chr6.4:2855082-2855101 None:intergenic 40.0%
! AGCACCCCATGATTGATAAT+TGG - chr6.4:2855085-2855104 None:intergenic 40.0%
! AGGGTTGTTGTTGTTGTTGA+TGG - chr6.4:2855010-2855029 None:intergenic 40.0%
! ATGGTATTGGAAGAGAGTGT+GGG + chr6.4:2855652-2855671 MS.gene47298:CDS 40.0%
! ATGGTGTTGAGAAATGGGAT+TGG - chr6.4:2854991-2855010 None:intergenic 40.0%
! CACCCCATGATTGATAATTG+GGG - chr6.4:2855083-2855102 None:intergenic 40.0%
! GAATCAGGTTGTTCGTAAAG+AGG + chr6.4:2855785-2855804 MS.gene47298:CDS 40.0%
! GCACCCCATGATTGATAATT+GGG - chr6.4:2855084-2855103 None:intergenic 40.0%
! TCCGATCACCAAGTATTTTC+TGG + chr6.4:2856472-2856491 MS.gene47298:intron 40.0%
! TGAAGGTGTGTAGAGAAAGT+AGG - chr6.4:2855040-2855059 None:intergenic 40.0%
! TGATAATGTCACCATCTCAG+GGG - chr6.4:2857013-2857032 None:intergenic 40.0%
! TGTGAAGGTGTATGTGATGA+TGG + chr6.4:2855282-2855301 MS.gene47298:CDS 40.0%
! TGTTGGTTGTGAAAATGGGA+AGG + chr6.4:2855488-2855507 MS.gene47298:CDS 40.0%
!! AAGCTCTTCTGAGACTGTTT+GGG + chr6.4:2857079-2857098 MS.gene47298:intron 40.0%
!! AAGGTGTATGTGATGATGGT+GGG + chr6.4:2855286-2855305 MS.gene47298:CDS 40.0%
!! GAAGAGCTTGCTTTTAGCTA+TGG + chr6.4:2857757-2857776 MS.gene47298:CDS 40.0%
!! GTTTGTGATAATGGGTCAGT+GGG + chr6.4:2855174-2855193 MS.gene47298:CDS 40.0%
!! GTTTTAGCAACCCACATAGA+AGG + chr6.4:2856832-2856851 MS.gene47298:intron 40.0%
!! TCCTGGTGTTTGCTATGTTA+AGG + chr6.4:2857342-2857361 MS.gene47298:intron 40.0%
!! TGTCATTTCAGATGATGGGT+CGG + chr6.4:2855119-2855138 MS.gene47298:CDS 40.0%
!! TGTTTGTGATAATGGGTCAG+TGG + chr6.4:2855173-2855192 MS.gene47298:CDS 40.0%
!! TTTGATGGGGTTGATGGTAT+TGG + chr6.4:2855639-2855658 MS.gene47298:CDS 40.0%
!!! AGTTTTGGTGATGGATGTGA+AGG + chr6.4:2855267-2855286 MS.gene47298:CDS 40.0%
AACGGTTGACGATGATGAGT+CGG + chr6.4:2855557-2855576 MS.gene47298:CDS 45.0%
AAGATTGTATGGTGTGGTGG+TGG + chr6.4:2855741-2855760 MS.gene47298:CDS 45.0%
AAGCAAAGAAGCAAAGGCGA+GGG - chr6.4:2857717-2857736 None:intergenic 45.0%
AATTGATCCGAATTCGGAGC+TGG + chr6.4:2856072-2856091 MS.gene47298:intron 45.0%
ACCTTTCACACAGAAAACCG+CGG - chr6.4:2857458-2857477 None:intergenic 45.0%
ACTCACTGACCCATCATCAT+TGG - chr6.4:2855250-2855269 None:intergenic 45.0%
AGATGGACAGGGATTGAACT+TGG - chr6.4:2856431-2856450 None:intergenic 45.0%
AGATGTTGGCAAGTTGTGTG+TGG - chr6.4:2854882-2854901 None:intergenic 45.0%
AGATTGTATGGTGTGGTGGT+GGG + chr6.4:2855742-2855761 MS.gene47298:CDS 45.0%
ATAGGTCAAGGGTGAAGTCT+TGG + chr6.4:2856723-2856742 MS.gene47298:intron 45.0%
CAAGAATTGGAAACGTTGCC+CGG + chr6.4:2857623-2857642 MS.gene47298:CDS 45.0%
CATCCAACACCAAAACTCAC+CGG - chr6.4:2855357-2855376 None:intergenic 45.0%
CTCAAACATGCCTTTCCTGA+TGG - chr6.4:2857586-2857605 None:intergenic 45.0%
CTCACTGACCCATCATCATT+GGG - chr6.4:2855249-2855268 None:intergenic 45.0%
GATGTTGGCAAGTTGTGTGT+GGG - chr6.4:2854881-2854900 None:intergenic 45.0%
GCAATGTTCCAAGGCAAGAA+GGG - chr6.4:2857828-2857847 None:intergenic 45.0%
GGAACATCTTCCATCAGGAA+AGG + chr6.4:2857573-2857592 MS.gene47298:CDS 45.0%
GGTTGTGAAAATGGGAAGGT+GGG + chr6.4:2855492-2855511 MS.gene47298:CDS 45.0%
GTAAGGGAACATCTTCCATC+AGG + chr6.4:2857568-2857587 MS.gene47298:CDS 45.0%
GTCTCAGAAGAGCTTGTGTT+AGG - chr6.4:2857074-2857093 None:intergenic 45.0%
GTTCAATCCCTGTCCATCTA+CGG + chr6.4:2856432-2856451 MS.gene47298:intron 45.0%
TCAGGAAAAAGTCCAATGGG+CGG + chr6.4:2857785-2857804 MS.gene47298:CDS 45.0%
TCATCATCGTCAACCGTTCT+AGG - chr6.4:2855555-2855574 None:intergenic 45.0%
TGGACTATTCTCGAAGGTTC+TGG - chr6.4:2854971-2854990 None:intergenic 45.0%
TGGGATTGGACTATTCTCGA+AGG - chr6.4:2854977-2854996 None:intergenic 45.0%
TGGTTGTGAAAATGGGAAGG+TGG + chr6.4:2855491-2855510 MS.gene47298:CDS 45.0%
TTCAATCCCTGTCCATCTAC+GGG + chr6.4:2856433-2856452 MS.gene47298:intron 45.0%
TTCACCAATTCCGCCTAGAA+CGG + chr6.4:2855539-2855558 MS.gene47298:CDS 45.0%
! AAGCTGTTTCGGAGAGCTTA+TGG - chr6.4:2857147-2857166 None:intergenic 45.0%
! AGATGACGGTCTATAGGTCA+AGG + chr6.4:2856711-2856730 MS.gene47298:intron 45.0%
! ATGGGGTTTGTTTGCGAATC+AGG + chr6.4:2855770-2855789 MS.gene47298:CDS 45.0%
! ATTGGAAGAGAGTGTGGGTT+GGG + chr6.4:2855657-2855676 MS.gene47298:CDS 45.0%
! GATGACGGTCTATAGGTCAA+GGG + chr6.4:2856712-2856731 MS.gene47298:intron 45.0%
! GATGATGAGTCGGTGAGTTT+TGG + chr6.4:2855567-2855586 MS.gene47298:CDS 45.0%
! GATGGTATTGGAAGAGAGTG+TGG + chr6.4:2855651-2855670 MS.gene47298:CDS 45.0%
! GTTGGGTTGTTTATGTGGGA+GGG + chr6.4:2855674-2855693 MS.gene47298:CDS 45.0%
! TATTGGAAGAGAGTGTGGGT+TGG + chr6.4:2855656-2855675 MS.gene47298:CDS 45.0%
!! AGCGATCGATGATGATGGAT+CGG + chr6.4:2855455-2855474 MS.gene47298:CDS 45.0%
!! AGGTGCTCTAAGAAATTGGG+AGG + chr6.4:2856779-2856798 MS.gene47298:intron 45.0%
!! AGGTGTATGTGATGATGGTG+GGG + chr6.4:2855287-2855306 MS.gene47298:CDS 45.0%
!! AGTTGTGTGTGGGTTAGGTA+TGG - chr6.4:2854871-2854890 None:intergenic 45.0%
!! ATTCCTCCGGTTGATGAAGT+TGG + chr6.4:2855330-2855349 MS.gene47298:CDS 45.0%
!! CAAGCTCTTCTGAGACTGTT+TGG + chr6.4:2857078-2857097 MS.gene47298:intron 45.0%
!! GAAGGTGTATGTGATGATGG+TGG + chr6.4:2855285-2855304 MS.gene47298:CDS 45.0%
!! GATGATGGATCGGTGAGATT+TGG + chr6.4:2855465-2855484 MS.gene47298:CDS 45.0%
!! GTATGTGATGATGGGTCTGT+GGG + chr6.4:2855390-2855409 MS.gene47298:CDS 45.0%
!! GTGGGTTGGGTTGTTTATGT+GGG + chr6.4:2855670-2855689 MS.gene47298:CDS 45.0%
!! TGTATGTGATGATGGGTCTG+TGG + chr6.4:2855389-2855408 MS.gene47298:CDS 45.0%
!! TGTGGGTTGGGTTGTTTATG+TGG + chr6.4:2855669-2855688 MS.gene47298:CDS 45.0%
!! TTCCTCCGGTTGATGAAGTT+GGG + chr6.4:2855331-2855350 MS.gene47298:CDS 45.0%
!!! GATGATGGGTCAGTGAGTTT+TGG + chr6.4:2855252-2855271 MS.gene47298:CDS 45.0%
ACTGACCCATCATCATTGGG+TGG - chr6.4:2855246-2855265 None:intergenic 50.0%
CACCACCACCCAATGATGAT+GGG + chr6.4:2855238-2855257 MS.gene47298:CDS 50.0%
CCAACACGTTGTTGGCAACA+AGG - chr6.4:2856517-2856536 None:intergenic 50.0%
CCATCATCATCGATCGCTCT+AGG - chr6.4:2855453-2855472 None:intergenic 50.0%
CCTAGAGCGATCGATGATGA+TGG + chr6.4:2855450-2855469 MS.gene47298:CDS 50.0%
CCTTGTTGCCAACAACGTGT+TGG + chr6.4:2856514-2856533 MS.gene47298:intron 50.0%
GAAGCAAAGAAGCAAAGGCG+AGG - chr6.4:2857718-2857737 None:intergenic 50.0%
GCGACGAAGGGTGATGATTT+GGG - chr6.4:2854935-2854954 None:intergenic 50.0%
GGCAATGTTCCAAGGCAAGA+AGG - chr6.4:2857829-2857848 None:intergenic 50.0%
GGTGTGGGATGTGAATGTGA+AGG + chr6.4:2855588-2855607 MS.gene47298:CDS 50.0%
TATGATGAACTGGCATCGCG+TGG + chr6.4:2857520-2857539 MS.gene47298:CDS 50.0%
TGCGACGAAGGGTGATGATT+TGG - chr6.4:2854936-2854955 None:intergenic 50.0%
TGGCAAGTTGTGTGTGGGTT+AGG - chr6.4:2854876-2854895 None:intergenic 50.0%
TGTGAAAATGGGAAGGTGGG+AGG + chr6.4:2855495-2855514 MS.gene47298:CDS 50.0%
TGTTTATGTGGGAGGGAGTG+TGG + chr6.4:2855681-2855700 MS.gene47298:CDS 50.0%
TTGTCTCCTCTGTGCTTCTG+TGG - chr6.4:2857494-2857513 None:intergenic 50.0%
! CTTCTGAGGGCAATGTTCCA+AGG - chr6.4:2857837-2857856 None:intergenic 50.0%
! GGTTGGGTTGTTTATGTGGG+AGG + chr6.4:2855673-2855692 MS.gene47298:CDS 50.0%
! TCAACCGTTCTAGGCGGAAT+TGG - chr6.4:2855546-2855565 None:intergenic 50.0%
! TCATCATCGATCGCTCTAGG+CGG - chr6.4:2855450-2855469 None:intergenic 50.0%
! TCATCGTCAACCGTTCTAGG+CGG - chr6.4:2855552-2855571 None:intergenic 50.0%
! TCCGCGGTTTTCTGTGTGAA+AGG + chr6.4:2857454-2857473 MS.gene47298:intron 50.0%
! TGACAACCACAGAAGCACAG+AGG + chr6.4:2857485-2857504 MS.gene47298:CDS 50.0%
! TGATGACGATACCCCTGAGA+TGG + chr6.4:2856999-2857018 MS.gene47298:intron 50.0%
! TGGGAGGGAGTGTGGTAATA+GGG + chr6.4:2855689-2855708 MS.gene47298:CDS 50.0%
!! GAGTCGGTGAGTTTTGGTGT+GGG + chr6.4:2855573-2855592 MS.gene47298:CDS 50.0%
!! GATGATGGGTCGGTGAGATT+TGG + chr6.4:2855129-2855148 MS.gene47298:CDS 50.0%
!! GGATCGGTGAGATTTGGTGT+TGG + chr6.4:2855471-2855490 MS.gene47298:CDS 50.0%
!! GGGTCAGTGAGTTTTGGTGA+TGG + chr6.4:2855258-2855277 MS.gene47298:CDS 50.0%
!! GGTGTATGTGATGATGGTGG+GGG + chr6.4:2855288-2855307 MS.gene47298:CDS 50.0%
!! TGAGTCGGTGAGTTTTGGTG+TGG + chr6.4:2855572-2855591 MS.gene47298:CDS 50.0%
!! TGTGATAATGGGTCAGTGGG+AGG + chr6.4:2855177-2855196 MS.gene47298:CDS 50.0%
AATGGGAAGGTGGGAGGTGA+TGG + chr6.4:2855501-2855520 MS.gene47298:CDS 55.0%
AATGGGTCAGTGGGAGGTTG+TGG + chr6.4:2855183-2855202 MS.gene47298:CDS 55.0%
ACCGGCCCAACTTCATCAAC+CGG - chr6.4:2855339-2855358 None:intergenic 55.0%
ATGGGAAGGTGGGAGGTGAT+GGG + chr6.4:2855502-2855521 MS.gene47298:CDS 55.0%
ATGGGTCAGTGGGAGGTTGT+GGG + chr6.4:2855184-2855203 MS.gene47298:CDS 55.0%
ATGGGTCTGTGGGAGATGGT+GGG + chr6.4:2855400-2855419 MS.gene47298:CDS 55.0%
CCACCACCACCCAATGATGA+TGG + chr6.4:2855237-2855256 MS.gene47298:CDS 55.0%
GACCCATCATCATTGGGTGG+TGG - chr6.4:2855243-2855262 None:intergenic 55.0%
GGTGATCGGATTTGCCAGAC+TGG - chr6.4:2856462-2856481 None:intergenic 55.0%
TGGCTTCCCGTAGATGGACA+GGG - chr6.4:2856442-2856461 None:intergenic 55.0%
! CCATCATCATTGGGTGGTGG+TGG - chr6.4:2855240-2855259 None:intergenic 55.0%
! GAAGTTGGGCCGGTGAGTTT+TGG + chr6.4:2855345-2855364 MS.gene47298:CDS 55.0%
! GTGGGAGGGAGTGTGGTAAT+AGG + chr6.4:2855688-2855707 MS.gene47298:CDS 55.0%
! TCGATCGCTCTAGGCGGAAT+TGG - chr6.4:2855444-2855463 None:intergenic 55.0%
!! CAATCATGGGGTGCTGGAGA+GGG + chr6.4:2855090-2855109 MS.gene47298:CDS 55.0%
!! CTCGAAGGTTCTGGAAGCGT+CGG - chr6.4:2854962-2854981 None:intergenic 55.0%
!! GATGATGGGTCTGTGGGAGA+TGG + chr6.4:2855396-2855415 MS.gene47298:CDS 55.0%
!! GTATGGTGTGGTGGTGGGAA+AGG + chr6.4:2855747-2855766 MS.gene47298:CDS 55.0%
!! GTGTGGTGGTGGGAAAGGAT+GGG + chr6.4:2855752-2855771 MS.gene47298:CDS 55.0%
!! TCAATCATGGGGTGCTGGAG+AGG + chr6.4:2855089-2855108 MS.gene47298:CDS 55.0%
!! TCATCATTGGGTGGTGGTGG+TGG - chr6.4:2855237-2855256 None:intergenic 55.0%
!! TCCGGTTGATGAAGTTGGGC+CGG + chr6.4:2855335-2855354 MS.gene47298:CDS 55.0%
!! TGTGGTGGTGGGAAAGGATG+GGG + chr6.4:2855753-2855772 MS.gene47298:CDS 55.0%
CCATCTACGGGAAGCCAGTC+TGG + chr6.4:2856445-2856464 MS.gene47298:intron 60.0%
CTGGCTTCCCGTAGATGGAC+AGG - chr6.4:2856443-2856462 None:intergenic 60.0%
GATGGGTCTGTGGGAGATGG+TGG + chr6.4:2855399-2855418 MS.gene47298:CDS 60.0%
GGCCCAACTTCATCAACCGG+AGG - chr6.4:2855336-2855355 None:intergenic 60.0%
TGCAGCAGCCCTTCTTGCCT+TGG + chr6.4:2857817-2857836 MS.gene47298:CDS 60.0%
TGGGAAGGTGGGAGGTGATG+GGG + chr6.4:2855503-2855522 MS.gene47298:CDS 60.0%
TGGGTCAGTGGGAGGTTGTG+GGG + chr6.4:2855185-2855204 MS.gene47298:CDS 60.0%
TGGGTCTGTGGGAGATGGTG+GGG + chr6.4:2855401-2855420 MS.gene47298:CDS 60.0%
! AGCGTCGGAGATGCGACGAA+GGG - chr6.4:2854947-2854966 None:intergenic 60.0%
!! AAGCGTCGGAGATGCGACGA+AGG - chr6.4:2854948-2854967 None:intergenic 60.0%
!! CCAGACTGGCTTCCCGTAGA+TGG - chr6.4:2856448-2856467 None:intergenic 60.0%
!! GGGCCGGTGAGTTTTGGTGT+TGG + chr6.4:2855351-2855370 MS.gene47298:CDS 60.0%
!! GGTGTGGTGGTGGGAAAGGA+TGG + chr6.4:2855751-2855770 MS.gene47298:CDS 60.0%
!! TCATTGGGTGGTGGTGGTGG+TGG - chr6.4:2855234-2855253 None:intergenic 60.0%
GCAGTGACACAGCCGCCCAT+TGG - chr6.4:2857800-2857819 None:intergenic 65.0%
GGGTCAGTGGGAGGTTGTGG+GGG + chr6.4:2855186-2855205 MS.gene47298:CDS 65.0%
TCAGTGGGAGGTTGTGGGGG+TGG + chr6.4:2855189-2855208 MS.gene47298:CDS 65.0%
! GGGAAGGTGGGAGGTGATGG+GGG + chr6.4:2855504-2855523 MS.gene47298:CDS 65.0%
! GGGTCTGTGGGAGATGGTGG+GGG + chr6.4:2855402-2855421 MS.gene47298:CDS 65.0%
!! AAGGTGGGAGGTGATGGGGG+TGG + chr6.4:2855507-2855526 MS.gene47298:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 2854772 2857864 2854772 ID=MS.gene47298
chr6.4 mRNA 2854772 2857864 2854772 ID=MS.gene47298.t1;Parent=MS.gene47298
chr6.4 exon 2854772 2855828 2854772 ID=MS.gene47298.t1.exon1;Parent=MS.gene47298.t1
chr6.4 CDS 2854772 2855828 2854772 ID=cds.MS.gene47298.t1;Parent=MS.gene47298.t1
chr6.4 exon 2857476 2857864 2857476 ID=MS.gene47298.t1.exon2;Parent=MS.gene47298.t1
chr6.4 CDS 2857476 2857864 2857476 ID=cds.MS.gene47298.t1;Parent=MS.gene47298.t1
Gene Sequence

>MS.gene47298

ATGAAGATTCCCAGGAAATCGAGTAGTAGCAATGGTGATTCAAACTCTTCATCGTCATCATCATCGTTTCTTGTTCAACACGCAACCCTAATTCTACCATACCTAACCCACACACAACTTGCCAACATCTCCTTAACATGTAAATCACTCCGTAAACTCACCCAAATCATCACCCTTCGTCGCATCTCCGACGCTTCCAGAACCTTCGAGAATAGTCCAATCCCATTTCTCAACACCATCAACAACAACAACAACCCTCCTTACTCCTACTTTCTCTACACACCTTCACTCATTCTGTCTCACAACACCCCCAATTATCAATCATGGGGTGCTGGAGAGGGTAATTCTGTCATTTCAGATGATGGGTCGGTGAGATTTGGTGTTGATTGTGATTTTGAAGGTGTTTGTGATAATGGGTCAGTGGGAGGTTGTGGGGGTGGTTCTGTCATTTCATCACTACCACCACCACCACCACCCAATGATGATGGGTCAGTGAGTTTTGGTGATGGATGTGAAGGTGTATGTGATGATGGTGGGGGTAAATCAGTAATTTCACTAATTCCTCCGGTTGATGAAGTTGGGCCGGTGAGTTTTGGTGTTGGATGTAATTTTCAAGGTGTATGTGATGATGGGTCTGTGGGAGATGGTGGGGGTAGTTCAGTAATTTCACCAATTCCGCCTAGAGCGATCGATGATGATGGATCGGTGAGATTTGGTGTTGGTTGTGAAAATGGGAAGGTGGGAGGTGATGGGGGTGGTTCAGTAATTTCACCAATTCCGCCTAGAACGGTTGACGATGATGAGTCGGTGAGTTTTGGTGTGGGATGTGAATGTGAAGGTGTTTGTGATGTTGAGTGTATGTGTTTTTTTGATGGGGTTGATGGTATTGGAAGAGAGTGTGGGTTGGGTTGTTTATGTGGGAGGGAGTGTGGTAATAGGGTGAGTCAAAATGGGGTTAATGTTAGGGTTAAGATTGTATGGTGTGGTGGTGGGAAAGGATGGGGTTTGTTTGCGAATCAGGTTGTTCGTAAAGAGGAGTTCTTGTTTCAATATGCAGGTATAAGTTTCATTGCTTTTATTAAGTATTTAAGTGATTGTTTGATTGATTATAGGATTGTAACATTGGTTCTTATGTACATATTTTAGTGTTTTTGCGTAGAATTGATTTGAACTTGAACGTGGAATTTGGAGGTCTTTTTGTCTCTATAATAGATGTTAGAATTGATTCTAGAATCGTATAGTTGATTATGACGTGTTTTTGTGTTTTAGAGTTGGAATGATTTTTCCATTAAAATTTTAGAATTGATCCGAATTCGGAGCTGGAATTTAGAGCTAGAATTGATGCTAGAAATCATAACGTGCTTGTTTGGATATATGTTGGTTTGACGTTTCTCGCGTCACAATGTGTTGTCAAGCTTAAGATTTTGAATTACGTTTATGTTATTTGTATCAGTATATGTCTGTGTGATGTGTACTTGTGTGTGCGCGCGCGTGCACGCTTTTGAATTTTGTATTTAATTTTTAGGTAAGAAATTTTCAATCTCAGCATAAATAAAGTCACGAACTAGAAAACACGTACGAGCTCATTGTTTCAAATTGCAAAGAACATAACAGACCAAAAACGTGAATAATCTGATGAGTTAAAAACTAGCTCTACCAAGTTCAATCCCTGTCCATCTACGGGAAGCCAGTCTGGCAAATCCGATCACCAAGTATTTTCTGGTTTATCATATGGAATTGAACCTTGTTGCCAACAACGTGTTGGTATGATTCGTCAATTTTACTTCTTCTACATGCTAGAATGCGATCAATCCACATTCTCAAGTAGAACAAATCCACTGTACATTTTCAATTGCCATTTTGACAACCTTCCCTTGAGTGAAATATTAAGTTTGCATTGCAAGCTGAGCTGTATTTTACCCTAATTATTAGCTTGTTAAGATGACGGTCTATAGGTCAAGGGTGAAGTCTTGGATTTGATATTTCGATGTAAAAAAATTACTTTCTAGGTGCTCTAAGAAATTGGGAGGTTTTATACTATAGTAGGAACATGTCTTTGGGTTTTAGCAACCCACATAGAAGGCGAAATCAATTTGCAAATTGCAATATGTTAAGTAGGAATATTTCAAATCCATAATATAAACTACTTGGACTTTTGAATTTAAGTTAGTATATAAGGTACTTTTGATATTTTGACTAATATAGGGAATTGAAAGGCATTTTAGTTTGATGACGATACCCCTGAGATGGTGACATTATCAAATATGAGTCTATTTGGATGACTTATTTGAGCTTATCTCCTAACACAAGCTCTTCTGAGACTGTTTGGGAAACAACTTATGACATGTCCATAAGTTGTTTTCAACTTATTTCCATAAGCTCTCCGAAACAGCTTATGAAAACAAATTGTAGCTTATATGAAAACAATTCGACTCTATGTTATCTTTTGTTATACAAATAGCTTATTGTATAAGAGCTGATGTTATAAACAGTTAATTAAATTGTTTATCCAAACAGAGCCATATATGCATATGAACTAAAGAGTTGTGTGAAGATTGATAGAAACTACCTCCTGGTGTTTGCTATGTTAAGGTGATTGGGTCTGATAGTTTCTTGATTCTTTTAGTTGTGTTTTTATGCATGGCATTTTCTTTTTCCCCACACAAATGCTTGTAAAATTAATCCGCGGTTTTCTGTGTGAAAGGTGAACTACTGACAACCACAGAAGCACAGAGGAGACAACAACATTATGATGAACTGGCATCGCGTGGTCGTTTCTCATCTGCTCTTTTAGTAGTAAGGGAACATCTTCCATCAGGAAAGGCATGTTTGAGATTGAACATAGACGCAACAAGAATTGGAAACGTTGCCCGGTTTGTAAATCATTCATGCGATGGTGGTAATTTAAGCACAAAGCTAGTCAGAAGTACAGGAGCTTTGTTCCCTCGCCTTTGCTTCTTTGCTTCAAAAGATATCCAAAAAGATGAAGAGCTTGCTTTTAGCTATGGAGAAATCAGGAAAAAGTCCAATGGGCGGCTGTGTCACTGCAGCAGCCCTTCTTGCCTTGGAACATTGCCCTCAGAAGACACTTGA
Protein sequence

>MS.gene47298.t1

MKIPRKSSSSNGDSNSSSSSSSFLVQHATLILPYLTHTQLANISLTCKSLRKLTQIITLRRISDASRTFENSPIPFLNTINNNNNPPYSYFLYTPSLILSHNTPNYQSWGAGEGNSVISDDGSVRFGVDCDFEGVCDNGSVGGCGGGSVISSLPPPPPPNDDGSVSFGDGCEGVCDDGGGKSVISLIPPVDEVGPVSFGVGCNFQGVCDDGSVGDGGGSSVISPIPPRAIDDDGSVRFGVGCENGKVGGDGGGSVISPIPPRTVDDDESVSFGVGCECEGVCDVECMCFFDGVDGIGRECGLGCLCGRECGNRVSQNGVNVRVKIVWCGGGKGWGLFANQVVRKEEFLFQYAGELLTTTEAQRRQQHYDELASRGRFSSALLVVREHLPSGKACLRLNIDATRIGNVARFVNHSCDGGNLSTKLVRSTGALFPRLCFFASKDIQKDEELAFSYGEIRKKSNGRLCHCSSPSCLGTLPSEDT