AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47299

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47299.t1 MTR_6g027700 89.474 209 21 1 1 208 1 209 4.54e-130 364
MS.gene47299.t1 MTR_6g027710 59.024 205 66 2 6 208 39 227 1.06e-79 238
MS.gene47299.t1 MTR_7g096530 56.604 106 46 0 6 111 13 118 2.93e-38 132
MS.gene47299.t1 MTR_7g096610 54.206 107 49 0 1 107 2 108 4.01e-38 131
MS.gene47299.t1 MTR_1g070205 54.286 105 48 0 7 111 12 116 4.25e-38 132
MS.gene47299.t1 MTR_7g074990 54.717 106 48 0 7 112 20 125 4.70e-38 132
MS.gene47299.t1 MTR_8g036085 57.426 101 43 0 7 107 23 123 2.28e-37 130
MS.gene47299.t1 MTR_1g070220 55.340 103 46 0 7 109 15 117 1.59e-36 127
MS.gene47299.t1 MTR_8g036105 57.000 100 43 0 7 106 18 117 4.83e-36 126
MS.gene47299.t1 MTR_5g080470 47.863 117 61 0 1 117 1 117 9.31e-36 124
MS.gene47299.t1 MTR_7g075230 52.336 107 49 2 3 107 8 114 3.07e-33 118
MS.gene47299.t1 MTR_4g083680 35.897 156 89 2 5 160 13 157 2.63e-31 112
MS.gene47299.t1 MTR_4g105170 50.000 96 47 1 6 101 10 104 2.80e-31 113
MS.gene47299.t1 MTR_3g077240 46.364 110 56 2 6 115 9 115 1.11e-30 111
MS.gene47299.t1 MTR_5g083960 41.176 119 69 1 5 123 37 154 2.82e-30 110
MS.gene47299.t1 MTR_5g017950 41.667 144 81 3 6 148 7 148 2.88e-30 114
MS.gene47299.t1 MTR_7g033800 48.515 101 51 1 6 106 10 109 2.95e-30 110
MS.gene47299.t1 MTR_3g031660 42.991 107 60 1 1 107 1 106 4.14e-30 109
MS.gene47299.t1 MTR_3g071590 45.631 103 55 1 5 107 6 107 6.62e-30 108
MS.gene47299.t1 MTR_2g093310 36.552 145 87 2 6 146 32 175 9.54e-30 109
MS.gene47299.t1 MTR_5g083230 38.168 131 69 2 6 136 5 123 1.66e-29 107
MS.gene47299.t1 MTR_6g005070 45.545 101 54 1 6 106 8 107 6.08e-29 105
MS.gene47299.t1 MTR_2g068760 44.118 102 56 1 6 107 12 112 1.05e-28 105
MS.gene47299.t1 MTR_3g094690 45.098 102 55 1 6 107 46 146 1.11e-28 107
MS.gene47299.t1 MTR_3g073690 46.602 103 54 1 5 107 7 108 1.11e-28 106
MS.gene47299.t1 MTR_4g060950 45.133 113 53 3 6 110 23 134 1.14e-28 106
MS.gene47299.t1 MTR_5g083010 44.554 101 55 1 5 105 9 108 5.51e-28 104
MS.gene47299.t1 MTR_3g452660 42.056 107 61 1 1 107 1 106 6.73e-28 107
MS.gene47299.t1 MTR_3g071420 43.564 101 56 1 5 105 12 111 8.93e-28 103
MS.gene47299.t1 MTR_3g094690 45.098 102 54 2 6 107 46 145 3.17e-27 103
MS.gene47299.t1 MTR_6g005080 43.564 101 56 1 6 106 9 108 4.65e-27 100
MS.gene47299.t1 MTR_1g095850 35.443 158 89 5 8 161 73 221 4.50e-26 100
MS.gene47299.t1 MTR_5g075020 47.059 102 53 1 6 107 42 142 2.99e-24 95.9
MS.gene47299.t1 MTR_5g075020 47.059 102 53 1 6 107 46 146 5.00e-24 95.5
MS.gene47299.t1 MTR_8g040900 47.126 87 45 1 1 87 1 86 5.12e-24 95.5
MS.gene47299.t1 MTR_5g093010 36.434 129 70 2 8 136 6 122 1.25e-23 92.0
MS.gene47299.t1 MTR_8g079620 42.424 99 56 1 7 105 8 105 3.17e-23 93.6
MS.gene47299.t1 MTR_8g079660 40.404 99 58 1 7 105 8 105 3.74e-23 94.0
MS.gene47299.t1 MTR_7g028905 38.000 100 61 1 8 107 6 104 1.35e-22 88.6
MS.gene47299.t1 MTR_2g100020 32.000 100 67 1 8 107 20 118 1.34e-18 82.0
MS.gene47299.t1 MTR_4g107450 35.000 100 64 1 8 107 11 109 1.85e-18 82.0
MS.gene47299.t1 MTR_8g079580 38.000 100 60 2 7 105 8 106 8.83e-18 79.0
MS.gene47299.t1 MTR_8g017090 32.000 100 67 1 8 107 13 111 1.09e-17 79.7
MS.gene47299.t1 MTR_6g011230 31.731 104 70 1 2 105 6 108 3.65e-17 76.6
MS.gene47299.t1 MTR_6g011250 31.210 157 82 6 8 156 10 148 6.90e-16 72.8
MS.gene47299.t1 MTR_4g088035 42.857 77 43 1 6 82 5 80 3.20e-15 72.4
MS.gene47299.t1 MTR_6g011200 29.268 123 78 3 8 129 10 124 3.88e-15 72.0
MS.gene47299.t1 MTR_4g099230 37.895 95 53 3 8 97 3 96 1.14e-13 66.2
MS.gene47299.t1 MTR_5g085390 30.081 123 79 3 8 129 10 126 1.59e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47299.t1 AT3G03760 45.631 206 97 4 6 208 50 243 2.09e-46 154
MS.gene47299.t1 AT2G42430 47.222 144 75 1 2 144 10 153 2.56e-39 135
MS.gene47299.t1 AT3G58190 58.416 101 42 0 7 107 11 111 5.85e-39 134
MS.gene47299.t1 AT2G42440 42.657 143 72 1 1 143 1 133 4.43e-37 129
MS.gene47299.t1 AT2G31310 47.664 107 56 0 1 107 1 107 3.14e-36 125
MS.gene47299.t1 AT2G45420 60.204 98 39 0 10 107 40 137 5.70e-36 127
MS.gene47299.t1 AT5G06080 49.573 117 57 1 1 117 1 115 9.59e-36 124
MS.gene47299.t1 AT4G00220 56.122 98 43 0 10 107 20 117 1.22e-34 123
MS.gene47299.t1 AT4G00210 53.465 101 47 0 7 107 11 111 8.84e-34 120
MS.gene47299.t1 AT2G45410 42.446 139 72 1 10 148 19 149 9.24e-33 117
MS.gene47299.t1 AT5G63090 45.133 113 61 1 6 118 10 121 3.03e-31 113
MS.gene47299.t1 AT5G63090 45.133 113 61 1 6 118 10 121 3.03e-31 113
MS.gene47299.t1 AT5G63090 45.133 113 61 1 6 118 10 121 3.03e-31 113
MS.gene47299.t1 AT5G63090 45.133 113 61 1 6 118 10 121 3.03e-31 113
MS.gene47299.t1 AT3G11090 43.689 103 57 1 5 107 9 110 3.35e-30 109
MS.gene47299.t1 AT1G16530 46.602 103 53 2 6 107 13 114 3.81e-30 109
MS.gene47299.t1 AT1G07900 37.879 132 80 2 6 136 32 162 6.86e-30 109
MS.gene47299.t1 AT3G27650 46.875 96 50 1 6 101 38 132 1.08e-29 108
MS.gene47299.t1 AT2G30130 45.631 103 55 1 5 107 6 107 3.54e-29 107
MS.gene47299.t1 AT5G66870 45.794 107 57 1 1 107 1 106 4.44e-29 110
MS.gene47299.t1 AT3G50510 42.857 105 59 1 1 105 6 109 6.40e-28 104
MS.gene47299.t1 AT3G50510 42.857 105 59 1 1 105 6 109 6.40e-28 104
MS.gene47299.t1 AT2G23660 41.739 115 64 2 5 119 3 114 8.64e-28 107
MS.gene47299.t1 AT2G23660 41.739 115 64 2 5 119 3 114 8.64e-28 107
MS.gene47299.t1 AT2G23660 41.739 115 64 2 5 119 3 114 8.64e-28 107
MS.gene47299.t1 AT1G31320 40.351 114 60 2 5 111 11 123 2.02e-27 102
MS.gene47299.t1 AT2G28500 44.330 97 53 1 6 102 54 149 5.50e-27 103
MS.gene47299.t1 AT2G30340 40.833 120 68 2 6 125 51 167 5.64e-27 103
MS.gene47299.t1 AT2G30340 40.833 120 68 2 6 125 52 168 6.07e-27 103
MS.gene47299.t1 AT3G26660 41.000 100 58 1 8 107 6 104 6.29e-26 97.4
MS.gene47299.t1 AT3G26620 41.000 100 58 1 8 107 6 104 9.26e-26 97.1
MS.gene47299.t1 AT1G65620 46.789 109 55 2 1 107 1 108 1.17e-24 96.3
MS.gene47299.t1 AT1G65620 46.789 109 55 2 1 107 1 108 1.17e-24 96.3
MS.gene47299.t1 AT1G65620 46.789 109 55 2 1 107 1 108 1.17e-24 96.3
MS.gene47299.t1 AT1G65620 46.789 109 55 2 1 107 1 108 1.17e-24 96.3
MS.gene47299.t1 AT1G65620 46.789 109 55 2 1 107 1 108 1.17e-24 96.3
MS.gene47299.t1 AT2G40470 47.059 102 53 1 6 107 19 119 1.61e-23 93.2
MS.gene47299.t1 AT1G72980 40.777 103 60 1 5 107 11 112 1.71e-23 93.6
MS.gene47299.t1 AT2G40470 47.059 102 53 1 6 107 44 144 2.55e-23 93.6
MS.gene47299.t1 AT3G13850 32.000 100 67 1 8 107 37 135 1.16e-18 82.0
MS.gene47299.t1 AT1G06280 40.860 93 51 2 8 97 25 116 5.90e-18 79.0
MS.gene47299.t1 AT5G35900 40.594 101 59 1 5 105 3 102 7.34e-18 78.6
MS.gene47299.t1 AT3G47870 27.184 103 74 1 5 107 34 135 9.95e-14 68.9
MS.gene47299.t1 AT4G22700 34.343 99 62 2 5 102 3 99 9.58e-13 64.7

Find 43 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGATGTGCACAAGGTCTT+TGG 0.280674 6.4:-2859407 MS.gene47299:CDS
GTGGACACACAACCATTAAT+TGG 0.284098 6.4:+2859284 None:intergenic
TTGTTGGTGGCAGCAAGAAC+AGG 0.345361 6.4:+2858779 None:intergenic
AGGATGTCTGATCCAATTAA+TGG 0.360827 6.4:-2859296 MS.gene47299:CDS
CTCCAGGTTCTCTTATCATC+AGG 0.387227 6.4:-2858669 MS.gene47299:CDS
TGAAGTTGTTCATGTTCATA+AGG 0.399289 6.4:+2858756 None:intergenic
TGCACAGAGGCATTGAAGTT+TGG 0.400635 6.4:+2858866 None:intergenic
TGCATCTTTGCACCCTACTT+TGG 0.409327 6.4:-2859455 MS.gene47299:CDS
CATCCTAGCCTGAGCCTCAT+AGG 0.413611 6.4:+2859313 None:intergenic
GTAGCATTTGCTGATGCTGC+AGG 0.445401 6.4:+2858894 None:intergenic
GTTCATGTTCATAAGGTTGT+TGG 0.448098 6.4:+2858763 None:intergenic
CATTTGTGCTTTGAAGAAAC+AGG 0.453347 6.4:-2859261 MS.gene47299:intron
GCTGCAGGTCTGTGGTCTGA+AGG 0.454305 6.4:+2858909 None:intergenic
GACTATGACCTATGAGGCTC+AGG 0.468164 6.4:-2859321 MS.gene47299:CDS
CTGTTTCTTCAAAGCACAAA+TGG 0.476347 6.4:+2859262 None:intergenic
GATGGATTGTTGGAGTATGC+TGG 0.496824 6.4:+2858842 None:intergenic
GCGGTGGTTAGTTGGAATAG+TGG 0.521356 6.4:+2859358 None:intergenic
AACATGAACAACTTCAACCC+TGG 0.523993 6.4:-2858749 MS.gene47299:CDS
GATGGAAGGAGATGGATTGT+TGG 0.524920 6.4:+2858832 None:intergenic
CTGCAGGTCTGTGGTCTGAA+GGG 0.529680 6.4:+2858910 None:intergenic
TTGCTGATGCTGCAGGTCTG+TGG 0.532868 6.4:+2858901 None:intergenic
TTGAAGAAGAAGTGTAGTAA+TGG 0.533156 6.4:-2859479 MS.gene47299:CDS
CATGTTCATAAGGTTGTTGG+TGG 0.547943 6.4:+2858766 None:intergenic
CAGATAAATCGACACCGTGT+GGG 0.552619 6.4:-2859514 MS.gene47299:CDS
TCCCTGATGATAAGAGAACC+TGG 0.572844 6.4:+2858667 None:intergenic
TTCATGAGATCGTCGATGGA+AGG 0.572919 6.4:+2858818 None:intergenic
AGATCGTCGATGGAAGGAGA+TGG 0.576323 6.4:+2858824 None:intergenic
TTTCTTCAAAGCACAAATGG+TGG 0.579379 6.4:+2859265 None:intergenic
CATGTTCATGAGATCGTCGA+TGG 0.583597 6.4:+2858814 None:intergenic
TCCATTGTGATATCAAAACC+AGG 0.586511 6.4:+2858731 None:intergenic
TCCAGGTTCTCTTATCATCA+GGG 0.596198 6.4:-2858668 MS.gene47299:CDS
AGGCTCAAAGCTCTGTGATG+AGG 0.599212 6.4:+2858700 None:intergenic
GGACAAGAGCTTCGACACAT+TGG 0.599388 6.4:+2859379 None:intergenic
AATGGAGACTATGACCTATG+AGG 0.602127 6.4:-2859327 MS.gene47299:CDS
TGACCTATGAGGCTCAGGCT+AGG 0.602297 6.4:-2859316 MS.gene47299:CDS
GCAGATAAATCGACACCGTG+TGG 0.608982 6.4:-2859515 MS.gene47299:CDS
AAAGCTCAGCAGACGAACAA+CGG 0.614223 6.4:-2858950 MS.gene47299:CDS
TGTTGGTGGCAGCAAGAACA+GGG 0.624562 6.4:+2858780 None:intergenic
TAGCTTTGCAGATGTGCACA+AGG 0.625800 6.4:-2859414 MS.gene47299:CDS
AGATAAATCGACACCGTGTG+GGG 0.638818 6.4:-2859513 MS.gene47299:CDS
AAGTGCTTGCAAGCCCCACA+CGG 0.644781 6.4:+2859500 None:intergenic
CCATTGTGATATCAAAACCA+GGG 0.693982 6.4:+2858732 None:intergenic
GGAGTATGCTGGTTGCACAG+AGG 0.785881 6.4:+2858853 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTGTAAATGGTTTATTAA+AGG + chr6.4:2858981-2859000 None:intergenic 20.0%
!!! ATTTTGTTTTTTACCAAAGT+AGG + chr6.4:2858737-2858756 None:intergenic 20.0%
!!! TTTTGTTTTTTACCAAAGTA+GGG + chr6.4:2858736-2858755 None:intergenic 20.0%
! ATAATGAATAACTTACCTGA+TGG - chr6.4:2859161-2859180 MS.gene47299:intron 25.0%
!! AAATGAAGTGTTTCTGTAAA+TGG + chr6.4:2858992-2859011 None:intergenic 25.0%
!! TTACAGAAACACTTCATTTT+CGG - chr6.4:2858993-2859012 MS.gene47299:intron 25.0%
TCAAGGTCTCAGATAAATTA+TGG + chr6.4:2859037-2859056 None:intergenic 30.0%
TGAAGTTGTTCATGTTCATA+AGG + chr6.4:2859423-2859442 None:intergenic 30.0%
! TTGAAGAAGAAGTGTAGTAA+TGG - chr6.4:2858697-2858716 MS.gene47299:CDS 30.0%
AACATTTGCTTAACCCACTT+GGG + chr6.4:2859103-2859122 None:intergenic 35.0%
AGGATGTCTGATCCAATTAA+TGG - chr6.4:2858880-2858899 MS.gene47299:CDS 35.0%
CCATTGTGATATCAAAACCA+GGG + chr6.4:2859447-2859466 None:intergenic 35.0%
GTTCATGTTCATAAGGTTGT+TGG + chr6.4:2859416-2859435 None:intergenic 35.0%
TCCATTGTGATATCAAAACC+AGG + chr6.4:2859448-2859467 None:intergenic 35.0%
TTTCTTCAAAGCACAAATGG+TGG + chr6.4:2858914-2858933 None:intergenic 35.0%
! AATTTATCTGAGACCTTGAG+AGG - chr6.4:2859038-2859057 MS.gene47299:intron 35.0%
! CTGTTTCTTCAAAGCACAAA+TGG + chr6.4:2858917-2858936 None:intergenic 35.0%
! GAAACACTTCATTTTCGGTA+AGG - chr6.4:2858998-2859017 MS.gene47299:intron 35.0%
!! CATTTGTGCTTTGAAGAAAC+AGG - chr6.4:2858915-2858934 MS.gene47299:CDS 35.0%
!!! TAGTCTCCATTGCTTTTTTG+CGG + chr6.4:2858840-2858859 None:intergenic 35.0%
AACATGAACAACTTCAACCC+TGG - chr6.4:2859379-2859398 MS.gene47299:CDS 40.0%
AATGGAGACTATGACCTATG+AGG - chr6.4:2858849-2858868 MS.gene47299:CDS 40.0%
CATGTTCATAAGGTTGTTGG+TGG + chr6.4:2859413-2859432 None:intergenic 40.0%
GAACATTTGCTTAACCCACT+TGG + chr6.4:2859104-2859123 None:intergenic 40.0%
GTGGACACACAACCATTAAT+TGG + chr6.4:2858895-2858914 None:intergenic 40.0%
TAACCACCGCAAAAAAGCAA+TGG - chr6.4:2858831-2858850 MS.gene47299:CDS 40.0%
TCCAGGTTCTCTTATCATCA+GGG - chr6.4:2859508-2859527 MS.gene47299:CDS 40.0%
! TTGAGCCTTTTCAAAACTCC+AGG - chr6.4:2859491-2859510 MS.gene47299:CDS 40.0%
!!! CCCTGGTTTTGATATCACAA+TGG - chr6.4:2859444-2859463 MS.gene47299:CDS 40.0%
!!! GAGAACCTGGAGTTTTGAAA+AGG + chr6.4:2859499-2859518 None:intergenic 40.0%
AAAGCTCAGCAGACGAACAA+CGG - chr6.4:2859226-2859245 MS.gene47299:intron 45.0%
AGATAAATCGACACCGTGTG+GGG - chr6.4:2858663-2858682 MS.gene47299:CDS 45.0%
CAGATAAATCGACACCGTGT+GGG - chr6.4:2858662-2858681 MS.gene47299:CDS 45.0%
CATGTTCATGAGATCGTCGA+TGG + chr6.4:2859365-2859384 None:intergenic 45.0%
CTCCAGGTTCTCTTATCATC+AGG - chr6.4:2859507-2859526 MS.gene47299:CDS 45.0%
TCCCTGATGATAAGAGAACC+TGG + chr6.4:2859512-2859531 None:intergenic 45.0%
TGCATCTTTGCACCCTACTT+TGG - chr6.4:2858721-2858740 MS.gene47299:CDS 45.0%
TTCATGAGATCGTCGATGGA+AGG + chr6.4:2859361-2859380 None:intergenic 45.0%
TTTGCTTAACCCACTTGGGT+TGG + chr6.4:2859099-2859118 None:intergenic 45.0%
! TAGCTTTGCAGATGTGCACA+AGG - chr6.4:2858762-2858781 MS.gene47299:CDS 45.0%
!! CTTAGAGAGTACTCCTCTCA+AGG + chr6.4:2859054-2859073 None:intergenic 45.0%
!! CTTGAGAGGAGTACTCTCTA+AGG - chr6.4:2859052-2859071 MS.gene47299:intron 45.0%
!! GATGGAAGGAGATGGATTGT+TGG + chr6.4:2859347-2859366 None:intergenic 45.0%
!! GATGGATTGTTGGAGTATGC+TGG + chr6.4:2859337-2859356 None:intergenic 45.0%
!! TGCACAGAGGCATTGAAGTT+TGG + chr6.4:2859313-2859332 None:intergenic 45.0%
!!! GCTTTTTTGCGGTGGTTAGT+TGG + chr6.4:2858829-2858848 None:intergenic 45.0%
!!! TCTCCATTGCTTTTTTGCGG+TGG + chr6.4:2858837-2858856 None:intergenic 45.0%
ACTTACCTGATGGCCAATCC+AGG - chr6.4:2859171-2859190 MS.gene47299:intron 50.0%
AGATCGTCGATGGAAGGAGA+TGG + chr6.4:2859355-2859374 None:intergenic 50.0%
AGGCTCAAAGCTCTGTGATG+AGG + chr6.4:2859479-2859498 None:intergenic 50.0%
GACTATGACCTATGAGGCTC+AGG - chr6.4:2858855-2858874 MS.gene47299:CDS 50.0%
GCAGATAAATCGACACCGTG+TGG - chr6.4:2858661-2858680 MS.gene47299:CDS 50.0%
GCAGATGTGCACAAGGTCTT+TGG - chr6.4:2858769-2858788 MS.gene47299:CDS 50.0%
GGACAAGAGCTTCGACACAT+TGG + chr6.4:2858800-2858819 None:intergenic 50.0%
! GCGGTGGTTAGTTGGAATAG+TGG + chr6.4:2858821-2858840 None:intergenic 50.0%
! GTAGCATTTGCTGATGCTGC+AGG + chr6.4:2859285-2859304 None:intergenic 50.0%
!! TGTTGGTGGCAGCAAGAACA+GGG + chr6.4:2859399-2859418 None:intergenic 50.0%
!! TTGTTGGTGGCAGCAAGAAC+AGG + chr6.4:2859400-2859419 None:intergenic 50.0%
AAGTGCTTGCAAGCCCCACA+CGG + chr6.4:2858679-2858698 None:intergenic 55.0%
CATCCTAGCCTGAGCCTCAT+AGG + chr6.4:2858866-2858885 None:intergenic 55.0%
CTGATGGCCAATCCAGGTGA+AGG - chr6.4:2859177-2859196 MS.gene47299:intron 55.0%
CTGCAGGTCTGTGGTCTGAA+GGG + chr6.4:2859269-2859288 None:intergenic 55.0%
TGACCTATGAGGCTCAGGCT+AGG - chr6.4:2858860-2858879 MS.gene47299:CDS 55.0%
TGCAGTGCCTTCACCTGGAT+TGG + chr6.4:2859187-2859206 None:intergenic 55.0%
TTGCTGATGCTGCAGGTCTG+TGG + chr6.4:2859278-2859297 None:intergenic 55.0%
! GGAGTATGCTGGTTGCACAG+AGG + chr6.4:2859326-2859345 None:intergenic 55.0%
!! CTTCACCTGGATTGGCCATC+AGG + chr6.4:2859179-2859198 None:intergenic 55.0%
!! TGGCCTGGTCGTGTTGGTTT+GGG + chr6.4:2859079-2859098 None:intergenic 55.0%
!! TTAACCCACTTGGGTTGGCC+TGG + chr6.4:2859094-2859113 None:intergenic 55.0%
!! TTGGCCTGGTCGTGTTGGTT+TGG + chr6.4:2859080-2859099 None:intergenic 55.0%
ACGACCAGGCCAACCCAAGT+GGG - chr6.4:2859087-2859106 MS.gene47299:intron 60.0%
CTGCTTGCAGTGCCTTCACC+TGG + chr6.4:2859192-2859211 None:intergenic 60.0%
GCTGCAGGTCTGTGGTCTGA+AGG + chr6.4:2859270-2859289 None:intergenic 60.0%
GGTCCCAAACCAACACGACC+AGG - chr6.4:2859073-2859092 MS.gene47299:intron 60.0%
!! TTGGGTTGGCCTGGTCGTGT+TGG + chr6.4:2859085-2859104 None:intergenic 60.0%
CACGACCAGGCCAACCCAAG+TGG - chr6.4:2859086-2859105 MS.gene47299:intron 65.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 2858658 2859540 2858658 ID=MS.gene47299
chr6.4 mRNA 2858658 2859540 2858658 ID=MS.gene47299.t1;Parent=MS.gene47299
chr6.4 exon 2859262 2859540 2859262 ID=MS.gene47299.t1.exon1;Parent=MS.gene47299.t1
chr6.4 CDS 2859262 2859540 2859262 ID=cds.MS.gene47299.t1;Parent=MS.gene47299.t1
chr6.4 exon 2858658 2859005 2858658 ID=MS.gene47299.t1.exon2;Parent=MS.gene47299.t1
chr6.4 CDS 2858658 2859005 2858658 ID=cds.MS.gene47299.t1;Parent=MS.gene47299.t1
Gene Sequence

>MS.gene47299

ATGGCAGATAAATCGACACCGTGTGGGGCTTGCAAGCACTTGAAGAAGAAGTGTAGTAATGGATGCATCTTTGCACCCTACTTTGGTAAAAAACAAAATGAAGCTAGCTTTGCAGATGTGCACAAGGTCTTTGGAGCTGCCAATGTGTCGAAGCTCTTGTCCACTATTCCAACTAACCACCGCAAAAAAGCAATGGAGACTATGACCTATGAGGCTCAGGCTAGGATGTCTGATCCAATTAATGGTTGTGTGTCCACCATTTGTGCTTTGAAGAAACAGGTTAAGTAGAATATTTATCTATCTTTTGCAGCTTCTATTCACCTTTAATAAACCATTTACAGAAACACTTCATTTTCGGTAAGGCAACAATTCTATTCCATAATTTATCTGAGACCTTGAGAGGAGTACTCTCTAAGGTCCCAAACCAACACGACCAGGCCAACCCAAGTGGGTTAAGCAAATGTTCACTTTAGATGAAACAAATAAAAAAATTGCATGCATGAATAATGAATAACTTACCTGATGGCCAATCCAGGTGAAGGCACTGCAAGCAGAGATCTCAATGATGAAAGCTCAGCAGACGAACAACGGATTTGCATATGCGAATGCCCTTCAGACCACAGACCTGCAGCATCAGCAAATGCTACAGCAACCAAACTTCAATGCCTCTGTGCAACCAGCATACTCCAACAATCCATCTCCTTCCATCGACGATCTCATGAACATGAACAACTTCAACCCTGTTCTTGCTGCCACCAACAACCTTATGAACATGAACAACTTCAACCCTGGTTTTGATATCACAATGGAGACAGCATCCTCATCACAGAGCTTTGAGCCTTTTCAAAACTCCAGGTTCTCTTATCATCAGGGAGACAATTAA
Protein sequence

>MS.gene47299.t1

MADKSTPCGACKHLKKKCSNGCIFAPYFGKKQNEASFADVHKVFGAANVSKLLSTIPTNHRKKAMETMTYEAQARMSDPINGCVSTICALKKQVKALQAEISMMKAQQTNNGFAYANALQTTDLQHQQMLQQPNFNASVQPAYSNNPSPSIDDLMNMNNFNPVLAATNNLMNMNNFNPGFDITMETASSSQSFEPFQNSRFSYHQGDN