AlfalfaGEDB | MS.gene47367

M. sativa cultivar XinJiangDaYe / MS.gene47367

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005737 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009165 GO:0009987 GO:0016301 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0033862 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046483 GO:0050145 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:0110165 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00696.31 PF13837.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47367.t1	XP_003590392.1	99.5	438	2	0	75	512	75	512	3.90E-246	860.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47367.t1	Q7VD61	48.5	241	118	3	271	509	1	237	3.6e-59	230.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47367.t1	A7UQU8	99.5	438	2	0	75	512	75	512	2.8e-246	860.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene47367.t1	TF	Trihelix

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47367.t1	MTR_1g061600	99.609	512	2	0	1	512	1	512	0.0	1068
MS.gene47367.t1	MTR_8g093330	48.106	264	124	4	252	508	56	313	9.28e-78	247
MS.gene47367.t1	MTR_2g016140	35.644	101	59	3	133	228	23	122	1.42e-15	78.2
MS.gene47367.t1	MTR_2g016140	35.644	101	59	3	133	228	23	122	1.53e-15	78.2
MS.gene47367.t1	MTR_4g079960	36.275	102	58	3	133	228	31	131	1.71e-15	77.8
MS.gene47367.t1	MTR_1g037650	41.346	104	51	4	121	221	27	123	2.09e-15	75.1
MS.gene47367.t1	MTR_6g486270	37.255	102	61	2	131	230	128	228	2.97e-15	77.8
MS.gene47367.t1	MTR_4g079960	36.275	102	58	3	133	228	31	131	3.18e-15	77.0
MS.gene47367.t1	MTR_4g079960	36.275	102	58	3	133	228	31	131	3.44e-15	77.0
MS.gene47367.t1	MTR_3g014280	41.346	104	51	4	121	221	27	123	2.30e-14	74.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47367.t1	AT3G10030	56.545	550	186	7	1	509	1	538	0.0	593
MS.gene47367.t1	AT3G10030	55.278	521	180	7	1	480	1	509	0.0	544
MS.gene47367.t1	AT3G18680	53.906	256	113	2	255	508	78	330	5.96e-91	281
MS.gene47367.t1	AT3G18680	47.751	289	113	3	255	508	78	363	1.62e-83	263
MS.gene47367.t1	AT3G54390	36.441	118	65	3	127	242	48	157	3.49e-17	82.8
MS.gene47367.t1	AT3G54390	36.441	118	65	3	127	242	32	141	3.63e-17	82.4
MS.gene47367.t1	AT3G58630	30.872	149	78	3	133	256	26	174	2.76e-16	80.5
MS.gene47367.t1	AT3G58630	30.872	149	78	3	133	256	26	174	3.07e-16	80.1
MS.gene47367.t1	AT3G14180	37.607	117	66	4	112	224	63	176	6.12e-16	80.5
MS.gene47367.t1	AT3G24490	31.667	120	73	3	105	221	64	177	1.30e-12	69.3

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Find 138 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGTTTCAAGCGGTAA+CGG	0.565973	1.1:-46769960	MS.gene47367:CDS
AAAGGAAGAGTTGTTATATT+TGG	0.225653	1.1:-46767193	MS.gene47367:CDS
AAATTTACGCAGCTGAATCG+AGG	0.599706	1.1:-46769843	MS.gene47367:CDS
AACATTTCAAAAGCTTTGTG+TGG	0.537883	1.1:-46766419	MS.gene47367:CDS
AACCTTAGGGTCAATATTGC+AGG	0.385341	1.1:+46768620	None:intergenic
AACTTCATTTGAAACTAACA+TGG	0.586306	1.1:+46768448	None:intergenic
AAGCAGATGGAACATATTGT+TGG	0.431908	1.1:-46769642	MS.gene47367:CDS
AAGCATTGTCAAACCTTAGA+TGG	0.420124	1.1:-46768692	MS.gene47367:CDS
AATATTGCAGGTATCGGATC+CGG	0.539941	1.1:+46768632	None:intergenic
AATCCATTCGACGATGACGC+TGG	0.603457	1.1:-46770062	MS.gene47367:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTAAACATGTAAGTCCT+GGG	+	chr1.1:46767471-46767490	None:intergenic	30.0%
AGTTTCAAATGAAGTTGCAA+TGG	-	chr1.1:46768216-46768235	MS.gene47367:intron	30.0%
ATAGAAAAGATCGAGAAGAA+TGG	-	chr1.1:46766749-46766768	MS.gene47367:intron	30.0%
ATGAACATCCTGATTACAAA+TGG	-	chr1.1:46768552-46768571	MS.gene47367:intron	30.0%
ATTTGTAATCAGGATGTTCA+TGG	+	chr1.1:46768553-46768572	None:intergenic	30.0%
CTTATTCTTTGTGATACTTC+AGG	-	chr1.1:46768327-46768346	MS.gene47367:intron	30.0%
GAGAGACATAGAATGAATAA+TGG	-	chr1.1:46766961-46766980	MS.gene47367:CDS	30.0%
TAAAGTAAACATGTAAGTCC+TGG	+	chr1.1:46767472-46767491	None:intergenic	30.0%
TCTTAAATTTGTCAGCATGA+TGG	-	chr1.1:46769307-46769326	MS.gene47367:intron	30.0%
TGAACATCCTGATTACAAAT+GGG	-	chr1.1:46768553-46768572	MS.gene47367:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	46766373	46770306	46766373	ID=MS.gene47367
chr1.1	mRNA	46766373	46770306	46766373	ID=MS.gene47367.t1;Parent=MS.gene47367
chr1.1	exon	46769564	46770306	46769564	ID=MS.gene47367.t1.exon1;Parent=MS.gene47367.t1
chr1.1	CDS	46769564	46770306	46769564	ID=cds.MS.gene47367.t1;Parent=MS.gene47367.t1
chr1.1	exon	46768623	46768767	46768623	ID=MS.gene47367.t1.exon2;Parent=MS.gene47367.t1
chr1.1	CDS	46768623	46768767	46768623	ID=cds.MS.gene47367.t1;Parent=MS.gene47367.t1
chr1.1	exon	46768421	46768474	46768421	ID=MS.gene47367.t1.exon3;Parent=MS.gene47367.t1
chr1.1	CDS	46768421	46768474	46768421	ID=cds.MS.gene47367.t1;Parent=MS.gene47367.t1
chr1.1	exon	46768239	46768330	46768239	ID=MS.gene47367.t1.exon4;Parent=MS.gene47367.t1
chr1.1	CDS	46768239	46768330	46768239	ID=cds.MS.gene47367.t1;Parent=MS.gene47367.t1
chr1.1	exon	46767122	46767357	46767122	ID=MS.gene47367.t1.exon5;Parent=MS.gene47367.t1
chr1.1	CDS	46767122	46767357	46767122	ID=cds.MS.gene47367.t1;Parent=MS.gene47367.t1
chr1.1	exon	46766815	46766985	46766815	ID=MS.gene47367.t1.exon6;Parent=MS.gene47367.t1
chr1.1	CDS	46766815	46766985	46766815	ID=cds.MS.gene47367.t1;Parent=MS.gene47367.t1
chr1.1	exon	46766373	46766470	46766373	ID=MS.gene47367.t1.exon7;Parent=MS.gene47367.t1
chr1.1	CDS	46766373	46766470	46766373	ID=cds.MS.gene47367.t1;Parent=MS.gene47367.t1

Gene Sequence

>MS.gene47367

ATGGCTTCTTGCGACGACGACGACGATTTCTCTCTCCTCCACGACGATAACAACCACCACTCTCACCACCACCACCTCCACCAAACCTTCGCACCTCACCACCACCACAACCACCACTCTCACCACCACTTCTCCACTGCTTCAGTCCAATCCAAACACATCACCACCTCCGTCTCCGCCGCCGTCGCCGACGACGACGGAGACGACACCGATGACTACGGTAATCCATTCGACGATGACGCTGGTAGCGAGAAACGTAAAGATCGAGATCGCGATGAGATCTGTGATGCAACGACGTCGTATGGATTCAACAACAAACGGTCAAAACCAGTTTCAAGCGGTAACGGTGGAGGAAGCGCCGGAGTAGGAGCAGAGTATAGAAAAGATCGAGAAGAATGGAGTGATACAGCGATAGTGTGTTTACTCGAAGCTTATACAGAGAAATTTACGCAGCTGAATCGAGGGAATCTAAGAGGAAGAGACTGGGAAGAAGTAGCTTCAATGGTGAGTGAACGGTGTGAGAATCAATCAAAGAGTGTGGAACAGTGTAAGAACAAGGTTGATAATTTGAAGAAAAGGTATAAGCTAGAGAGACATAGAATGAATAATGGTTGCATTTCTGCTAGTCATTGGCCTTGGTTTAAGCAGATGGAACATATTGTTGGGAATTCGCTTCCGGCCAAGTTTGCTGATGATGATAAAGCTATTGTTCCTGCTTCAATTTCACCTAGGCAATCTAAGAGGTTTAATCTGTTTCATAAATGCTTGATTTAGTTAAATGCTTATGGATTGGTATAATGTGAAAATTCAAAACTTTATGACATTACTTCTTCGATACGTTTAGATTTTAGGGTAGGATTTTTGGAATAAATAGACTATCTTTGTGTTTGACCGAATCTGAAAATTTTATGTTTTGTTTAGGTGTGTTGCATTTGCTGTTTTTGTTTTAATCGGCAAATGTTAGTTGTTAGATTAAATATTTACGCGTTTGATGTGCTAAAAAATAAGGGACCGGACAACGTCAGATGTTCGTGTTTGTCTTGTGCTCTTTTGTTCAGTACTTAAATGCTCCATTACTCCTTTTCCGGGATTGAACCCAGGACTTACATGTTTACTTTATTAATTATGGTGTTTACAAATCTTGTGTTTGACTGTGCTCTATAACCACAGTTTTGTTTTTCATTTGAGTACCTTGTTCATTATTACAATTAGATTCTTCCGTAAAACTGAACACACACTAGGATTTGAAACTAAGGTCTGCAGGTGAGACTAAATATGGAAGTTTTCTTCAATTGTATTGTTGCAATCTATATCATGATATCTTCAAGACCATATTTCAAGTTCACAAATTACATGGGAACCTAAGCTCTTAATTCCAATTCGCAATGCTAAGTAGTGTTACTTGGATGGAGTGGCATATTGATTGTGTTGTCATTGTTTGGACCATTATAGTTTGAATGTCATTCATCATGCACTGTTTTCCTTGTTCTTATTCCTGTAATATTGTGAATATTGAGCCTTCCCCTCCTTTATTTTTAGATATGGAGTGGCTACGTCCAGCAGTGGAGGTCAAGTAAACAGCCTGAAGTCCAAAGCATTGTCAAACCTTAGATGGCGGAGAGTTGTTCTAAAAATTAGTGGATCGGCACTTACCGGATCCGATACCTGCAATATTGACCCTAAGGTTTGTGGTAATGTACCTAAAATGAAATACAGTTGCAGTCTGGTTATATTATATATGTGGAAAGTTGACTCATGATCATAGTCTATAGTAAGAAGTCTAATTGTTATGACAAAGCTTACTCCATTCGCTTTCTTAAATTTATTGTCAGGTCGCCATGTTAGTTTCAAATGAAGTTGCAATGGCTTCCCGTCTTGGTGTGGAGGTACAGTTCTCATGATTTTCCTCTAGGGTCTTGTATTTTGCTATCCTATTCAGTTTAGCTGAAGCTTGCTTATTCTTTGTGATACTTCAGGTAGCAATTGTTGTTGGAGGTCGTAATTTCTTCTGTGGTGATGCATGGGTAACTGCAACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGGTAAGATTAATCACTAAAAGTTCAATGTATATTCTATTTATGGTCTTGCAATTTTACTAGAAATCCATCAAAAAGAAAATAAAAGAAAAAAAAAAATAGATTTAGATAACCATGAACATCCTGATTACAAATGGGTGATCCAAGGAAAACATAGAACAGCTAGTTGAAGTTGGGATGTGGGAAAGAGAGCATCTTGGTGACAGGCCAGGGAAGGCCACAGCTGGGGAGTGAACTTTGACTTGTATGGGATTGGTAGTGCCAATTGCATGGCAACTGCCTCCTCTGGATCATTGGAGTGCAAAGAGGACTAAGACTCATCTCATTTTAAAAAAGAAAATTGGAAATTTGAACTTTTAGGTAGGGCTGTAAATGTGGAGTGAGGTCAGAACCACCGGGAGGTTAAATTGGCACTGTGCTTTGTCTATATTATTTCTTTTCCAACTGGATGTGCTTTGCTGATGATTTGCATAAGCTTCATCACATCCTTCCTAGAGTTGCACATCTGACCTTTGTTTAGCAGCATATTGAAATTTGTGCAGTTTTGATTTTATGATGAATAAGTTTATATTGAAATACTTACGACAATGATTTATTTTTGGACAGTTTTACTTGTCAACTTTTGTTATATTTTTTTTCGTTTTCATCAAAAGCCTAAATGAATTTTTGATGCTTGAACTTTATTGGCATCCCATCTTCATGTATTGCACATGGGTAATATGAGATCAGTGTTTTCATGGCTTCTAGTTCATTAGATTAGATGTTGCACTTATGCTGCCATAAGATCTTTTTAATCTTTATGGTTAATATATCTTCTAAAGTGATTTGTTTTTTTCTTTCTTTCTACATTTTAAAATATTGACCTGAGTTCTTAAATTTGTCAGCATGATGGCAACTGTGATGAACTCCTTACTGCTTCAATCAACTTTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTTCAATGCAGGCGTTTGCTGAACCGTACAATAGGCAACGGGCCATCAGGCATCTTGAGAAAGGAAGAGTTGTTATATTTGGTGGCATTGGTTTTGGTGCTGGTAATCCACTTTTCTCAACCGACATATCTGCTGCTCTTCGGGCTTCAGAGGGTATGCTTCTGTCCTTACTCCTTTCTATATAATTTTCTATTACTCTTCCCTCCGCATCATCTATTACTCTTTCCCCCACATCAACCACATGGATATTTTTGGCAAGCATAATTAGCGCATGTTATCTGCTCTGCAGTTAATGCTCAGGCTGTCCTCAAAGGTACCAACGTAGATGGCGTATATGACTGCAACTCACGAGACAACAATTTCACTTTCGAGCACATATCCTTCAGGGAGCTAGTGTCTAGAGGTGTCACCTCTATGGATATGTCAGCCCTGACATTCTGCGAGGAAAATGCCATTCCTGGTAAGCAATACTATTGCATCTGGTCTTTTTATGGGGGTGTTTCAGGTTGTGCTGCTTTAGATATTGTTCAATACACAATACAATGCATTGTCATTCTCCATGTTCCTTGCAGTGGATTTCAAATAAGTCCTGTCGCATATTTAAATATCTAGGCACATCTATGCCATAAATTTTTGTAGTGCTTAGCTGTTGTTCTCATAGTGCTAGTATTTTCTTTTATATGGAAGTTTTTGTAACCCAAGGTTATTTTCATAAACTGATGATGATACTCGTTGAAGTAACCAATGAAGCAGACTATTCATAACAATCTATTTGATGCGTTTTTCCACCATTTCTTTGTGCAGTTGTAGTTTTTAATCTATTGGCACCCGGGAACATTTCAAAAGCTTTGTGTGGAGAACAAGTTGGCACACTTATTGACCAAACTGGAGCAATAAGCTAA

Protein sequence

>MS.gene47367.t1

MASCDDDDDFSLLHDDNNHHSHHHHLHQTFAPHHHHNHHSHHHFSTASVQSKHITTSVSAAVADDDGDDTDDYGNPFDDDAGSEKRKDRDRDEICDATTSYGFNNKRSKPVSSGNGGGSAGVGAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVASMVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISASHWPWFKQMEHIVGNSLPAKFADDDKAIVPASISPRQSKRYGVATSSSGGQVNSLKSKALSNLRWRRVVLKISGSALTGSDTCNIDPKVAMLVSNEVAMASRLGVEVAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSLLLQSTLEKMGVQTRVQTSVSMQAFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGNPLFSTDISAALRASEVNAQAVLKGTNVDGVYDCNSRDNNFTFEHISFRELVSRGVTSMDMSALTFCEENAIPVVVFNLLAPGNISKALCGEQVGTLIDQTGAIS