AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47367

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47367.t1 MTR_1g061600 99.609 512 2 0 1 512 1 512 0.0 1068
MS.gene47367.t1 MTR_8g093330 48.106 264 124 4 252 508 56 313 9.28e-78 247
MS.gene47367.t1 MTR_2g016140 35.644 101 59 3 133 228 23 122 1.42e-15 78.2
MS.gene47367.t1 MTR_2g016140 35.644 101 59 3 133 228 23 122 1.53e-15 78.2
MS.gene47367.t1 MTR_4g079960 36.275 102 58 3 133 228 31 131 1.71e-15 77.8
MS.gene47367.t1 MTR_1g037650 41.346 104 51 4 121 221 27 123 2.09e-15 75.1
MS.gene47367.t1 MTR_6g486270 37.255 102 61 2 131 230 128 228 2.97e-15 77.8
MS.gene47367.t1 MTR_4g079960 36.275 102 58 3 133 228 31 131 3.18e-15 77.0
MS.gene47367.t1 MTR_4g079960 36.275 102 58 3 133 228 31 131 3.44e-15 77.0
MS.gene47367.t1 MTR_3g014280 41.346 104 51 4 121 221 27 123 2.30e-14 74.7
MS.gene47367.t1 MTR_5g017500 34.000 100 60 2 133 226 22 121 1.96e-13 70.1
MS.gene47367.t1 MTR_4g117990 38.000 100 58 2 133 228 44 143 5.45e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47367.t1 AT3G10030 56.545 550 186 7 1 509 1 538 0.0 593
MS.gene47367.t1 AT3G10030 55.278 521 180 7 1 480 1 509 0.0 544
MS.gene47367.t1 AT3G18680 53.906 256 113 2 255 508 78 330 5.96e-91 281
MS.gene47367.t1 AT3G18680 47.751 289 113 3 255 508 78 363 1.62e-83 263
MS.gene47367.t1 AT3G54390 36.441 118 65 3 127 242 48 157 3.49e-17 82.8
MS.gene47367.t1 AT3G54390 36.441 118 65 3 127 242 32 141 3.63e-17 82.4
MS.gene47367.t1 AT3G58630 30.872 149 78 3 133 256 26 174 2.76e-16 80.5
MS.gene47367.t1 AT3G58630 30.872 149 78 3 133 256 26 174 3.07e-16 80.1
MS.gene47367.t1 AT3G14180 37.607 117 66 4 112 224 63 176 6.12e-16 80.5
MS.gene47367.t1 AT3G24490 31.667 120 73 3 105 221 64 177 1.30e-12 69.3
MS.gene47367.t1 AT2G44730 38.043 92 53 2 133 220 64 155 2.50e-12 68.9

Find 138 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGAAGAGTTGTTATATT+TGG 0.225653 1.1:-46767193 MS.gene47367:CDS
TTGACAATGCTTTGGACTTC+AGG 0.272821 1.1:+46768703 None:intergenic
CGACATATCTGCTGCTCTTC+GGG 0.289993 1.1:-46767131 MS.gene47367:CDS
ATATTTGGTGGCATTGGTTT+TGG 0.302206 1.1:-46767178 MS.gene47367:CDS
CTTTCGAGCACATATCCTTC+AGG 0.327576 1.1:-46766888 MS.gene47367:CDS
GAACAACTCTCCGCCATCTA+AGG 0.331588 1.1:+46768679 None:intergenic
GGTGGTGAGGTGCGAAGGTT+TGG 0.337687 1.1:+46770204 None:intergenic
GAGAGTGGTGGTTGTGGTGG+TGG 0.365463 1.1:+46770186 None:intergenic
TGCGAGGAAAATGCCATTCC+TGG 0.369901 1.1:-46766814 MS.gene47367:intron
CCGACATATCTGCTGCTCTT+CGG 0.371066 1.1:-46767132 MS.gene47367:CDS
TATTGTTGGGAATTCGCTTC+CGG 0.371702 1.1:-46769628 MS.gene47367:CDS
CGAAGGTTTGGTGGAGGTGG+TGG 0.380551 1.1:+46770216 None:intergenic
TCAATCAACTTTAGAGAAGA+TGG 0.381962 1.1:-46767302 MS.gene47367:CDS
AACCTTAGGGTCAATATTGC+AGG 0.385341 1.1:+46768620 None:intergenic
GTCTAGAGGTGTCACCTCTA+TGG 0.386263 1.1:-46766857 MS.gene47367:CDS
TCTAAGGTTTGACAATGCTT+TGG 0.391295 1.1:+46768695 None:intergenic
TTTCTGCTAGTCATTGGCCT+TGG 0.394011 1.1:-46769668 MS.gene47367:CDS
CCACCGTTACCGCTTGAAAC+TGG 0.397009 1.1:+46769957 None:intergenic
AGGTTTGGTGGAGGTGGTGG+TGG 0.399667 1.1:+46770219 None:intergenic
GGAGGTGGTGGTGGTGAGAG+TGG 0.404152 1.1:+46770228 None:intergenic
GTTGCATTTCTGCTAGTCAT+TGG 0.405063 1.1:-46769674 MS.gene47367:CDS
GGCACACTTATTGACCAAAC+TGG 0.406605 1.1:-46766386 MS.gene47367:CDS
GTTTACTTGACCTCCACTGC+TGG 0.412531 1.1:+46768728 None:intergenic
GTTAGCTTATTGCTCCAGTT+TGG 0.414252 1.1:+46766372 None:intergenic
AAGCATTGTCAAACCTTAGA+TGG 0.420124 1.1:-46768692 MS.gene47367:CDS
ATTAGTGGATCGGCACTTAC+CGG 0.426477 1.1:-46768651 MS.gene47367:CDS
CTTCAGGTAGCAATTGTTGT+TGG 0.428109 1.1:-46768314 MS.gene47367:intron
AAGCAGATGGAACATATTGT+TGG 0.431908 1.1:-46769642 MS.gene47367:CDS
GGTGAGGTGCGAAGGTTTGG+TGG 0.432109 1.1:+46770207 None:intergenic
GTGCGAAGGTTTGGTGGAGG+TGG 0.433564 1.1:+46770213 None:intergenic
GGAAGAGTTGTTATATTTGG+TGG 0.436188 1.1:-46767190 MS.gene47367:CDS
GGTGGTGAGAGTGGTGGTTG+TGG 0.437072 1.1:+46770180 None:intergenic
CTCAAAGGTACCAACGTAGA+TGG 0.437085 1.1:-46766946 MS.gene47367:CDS
CGTTTGCTGAACCGTACAAT+AGG 0.437374 1.1:-46767240 MS.gene47367:CDS
GTTGTTATATTTGGTGGCAT+TGG 0.439242 1.1:-46767184 MS.gene47367:CDS
AGCAGATGGAACATATTGTT+GGG 0.444247 1.1:-46769641 MS.gene47367:CDS
GACGGAGGTGGTGATGTGTT+TGG 0.447470 1.1:+46770133 None:intergenic
CTGCTCTGCAGTTAATGCTC+AGG 0.451851 1.1:-46766974 MS.gene47367:intron
AGGTTGATAATTTGAAGAAA+AGG 0.452877 1.1:-46769728 MS.gene47367:CDS
GATGTACTGCATACCAAGTT+GGG 0.454334 1.1:-46768238 MS.gene47367:intron
ATAGAAAAGATCGAGAAGAA+TGG 0.456281 1.1:-46769908 MS.gene47367:CDS
TCTATACTCTGCTCCTACTC+CGG 0.456827 1.1:+46769926 None:intergenic
GTCGTCGTCGGCGACGGCGG+CGG 0.456922 1.1:+46770109 None:intergenic
TTTATCATCATCAGCAAACT+TGG 0.459547 1.1:+46769605 None:intergenic
CATCTACGTTGGTACCTTTG+AGG 0.460201 1.1:+46766947 None:intergenic
GGTGAGAGTGGTGGTTGTGG+TGG 0.464473 1.1:+46770183 None:intergenic
GAGAGACATAGAATGAATAA+TGG 0.466819 1.1:-46769696 MS.gene47367:CDS
GTGGTGGTGGTGAGGTGCGA+AGG 0.467732 1.1:+46770199 None:intergenic
TGTGATGCAACGACGTCGTA+TGG 0.469790 1.1:-46770002 MS.gene47367:CDS
TCCTTTCTCAAGATGCCTGA+TGG 0.470108 1.1:+46767210 None:intergenic
GTCGGCGACGGCGGCGGAGA+CGG 0.470366 1.1:+46770115 None:intergenic
ACAATAGGCAACGGGCCATC+AGG 0.470864 1.1:-46767225 MS.gene47367:CDS
TTGGCCTTGGTTTAAGCAGA+TGG 0.477301 1.1:-46769655 MS.gene47367:CDS
GTTGCAATGGCTTCCCGTCT+TGG 0.480588 1.1:-46768428 MS.gene47367:CDS
GTCTCCGTCGTCGTCGGCGA+CGG 0.482206 1.1:+46770103 None:intergenic
GGAATCTAAGAGGAAGAGAC+TGG 0.484398 1.1:-46769821 MS.gene47367:CDS
CAGGTAGCAATTGTTGTTGG+AGG 0.488440 1.1:-46768311 MS.gene47367:CDS
TGGAGAAGTGGTGGTGAGAG+TGG 0.489471 1.1:+46770171 None:intergenic
ATTTCTTCTGTGGTGATGCA+TGG 0.491743 1.1:-46768283 MS.gene47367:CDS
CTGGGAAGAAGTAGCTTCAA+TGG 0.493185 1.1:-46769802 MS.gene47367:CDS
TGCTGCTCTTCGGGCTTCAG+AGG 0.502112 1.1:-46767122 MS.gene47367:CDS
GATGCATGGGTAACTGCAAC+AGG 0.506168 1.1:-46768269 MS.gene47367:CDS
TTTCGAGCACATATCCTTCA+GGG 0.508101 1.1:-46766887 MS.gene47367:CDS
GACGGCGGCGGAGACGGAGG+TGG 0.510775 1.1:+46770121 None:intergenic
TAAAGTTGATTGAAGCAGTA+AGG 0.510796 1.1:+46767312 None:intergenic
TGGTGGTTGTGGTGGTGGTG+AGG 0.511118 1.1:+46770191 None:intergenic
TCTTAAATTTGTCAGCATGA+TGG 0.513943 1.1:-46767350 MS.gene47367:intron
ATAGTATTGCTTACCAGGAA+TGG 0.515872 1.1:+46766801 None:intergenic
GTGATTAATCTTACCCAACT+TGG 0.518834 1.1:+46768225 None:intergenic
GCCATCAGGCATCTTGAGAA+AGG 0.521422 1.1:-46767211 MS.gene47367:CDS
GGTGGTGGTGGTGAGAGTGG+TGG 0.521909 1.1:+46770231 None:intergenic
CTGTACCTCCACACCAAGAC+GGG 0.522588 1.1:+46768415 None:intergenic
ATGGCCCGTTGCCTATTGTA+CGG 0.527865 1.1:+46767229 None:intergenic
GGCTTCCCGTCTTGGTGTGG+AGG 0.530692 1.1:-46768420 MS.gene47367:intron
TCCGTCGTCGTCGGCGACGG+CGG 0.535708 1.1:+46770106 None:intergenic
AGATGTACTGCATACCAAGT+TGG 0.537226 1.1:-46768239 MS.gene47367:CDS
AACATTTCAAAAGCTTTGTG+TGG 0.537883 1.1:-46766419 MS.gene47367:CDS
TCATCATCAGCAAACTTGGC+CGG 0.538573 1.1:+46769609 None:intergenic
AATATTGCAGGTATCGGATC+CGG 0.539941 1.1:+46768632 None:intergenic
TACCTGCAATATTGACCCTA+AGG 0.540236 1.1:-46768622 MS.gene47367:intron
CTACCAGCGTCATCGTCGAA+TGG 0.542605 1.1:+46770059 None:intergenic
CAATCAACTTTAGAGAAGAT+GGG 0.544338 1.1:-46767301 MS.gene47367:CDS
TGCCTAGGTGAAATTGAAGC+AGG 0.547449 1.1:+46769573 None:intergenic
AGGGTCAATATTGCAGGTAT+CGG 0.548147 1.1:+46768626 None:intergenic
TTTCTTCTGTGGTGATGCAT+GGG 0.549335 1.1:-46768282 MS.gene47367:CDS
AGGTGGTGATGTGTTTGGAT+TGG 0.554894 1.1:+46770138 None:intergenic
TTTCACCTAGGCAATCTAAG+AGG 0.557596 1.1:-46769563 MS.gene47367:intron
GTTTCAAGCGGTAACGGTGG+AGG 0.559105 1.1:-46769954 MS.gene47367:CDS
CTGAATCGAGGGAATCTAAG+AGG 0.560567 1.1:-46769831 MS.gene47367:CDS
TGAACCGTACAATAGGCAAC+GGG 0.562366 1.1:-46767233 MS.gene47367:CDS
GATATGTCGGTTGAGAAAAG+TGG 0.562539 1.1:+46767145 None:intergenic
GGCGACGGCGGCGGAGACGG+AGG 0.562987 1.1:+46770118 None:intergenic
AGTTTCAAATGAAGTTGCAA+TGG 0.565412 1.1:-46768441 MS.gene47367:CDS
AAACCAGTTTCAAGCGGTAA+CGG 0.565973 1.1:-46769960 MS.gene47367:CDS
AATGCTCAGGCTGTCCTCAA+AGG 0.568956 1.1:-46766961 MS.gene47367:CDS
GCTGCTCTTCGGGCTTCAGA+GGG 0.570088 1.1:-46767121 MS.gene47367:intron
CGTATGGATTCAACAACAAA+CGG 0.572327 1.1:-46769986 MS.gene47367:CDS
ACAAACTTCAGTTTCAATGC+AGG 0.580585 1.1:-46767263 MS.gene47367:CDS
GGTGGAGGAAGCGCCGGAGT+AGG 0.580586 1.1:-46769939 MS.gene47367:CDS
GGTGTCGTCTCCGTCGTCGT+CGG 0.581790 1.1:+46770097 None:intergenic
AACTTCATTTGAAACTAACA+TGG 0.586306 1.1:+46768448 None:intergenic
GTCATATACGCCATCTACGT+TGG 0.587713 1.1:+46766936 None:intergenic
GGAGGTCGTAATTTCTTCTG+TGG 0.589587 1.1:-46768293 MS.gene47367:CDS
TTAAACCTCTTAGATTGCCT+AGG 0.591137 1.1:+46769558 None:intergenic
GCCGCCGTCGCCGACGACGA+CGG 0.592641 1.1:-46770107 MS.gene47367:CDS
GTGGCTACGTCCAGCAGTGG+AGG 0.596879 1.1:-46768738 MS.gene47367:CDS
AAATTTACGCAGCTGAATCG+AGG 0.599706 1.1:-46769843 MS.gene47367:CDS
AATCCATTCGACGATGACGC+TGG 0.603457 1.1:-46770062 MS.gene47367:CDS
GGTAACGGTGGAGGAAGCGC+CGG 0.603519 1.1:-46769945 MS.gene47367:CDS
TGAGAATCAATCAAAGAGTG+TGG 0.603965 1.1:-46769766 MS.gene47367:CDS
GAGGTGCGAAGGTTTGGTGG+AGG 0.605729 1.1:+46770210 None:intergenic
TTCAGGGAGCTAGTGTCTAG+AGG 0.610453 1.1:-46766871 MS.gene47367:CDS
CAGGGCTGACATATCCATAG+AGG 0.610631 1.1:+46766843 None:intergenic
CTGAACCGTACAATAGGCAA+CGG 0.610750 1.1:-46767234 MS.gene47367:CDS
AGAAGTGGTGGTGAGAGTGG+TGG 0.614183 1.1:+46770174 None:intergenic
TGTTCCATCTGCTTAAACCA+AGG 0.614998 1.1:+46769651 None:intergenic
TAGCTTCAATGGTGAGTGAA+CGG 0.616747 1.1:-46769791 MS.gene47367:CDS
AATTTACGCAGCTGAATCGA+GGG 0.619923 1.1:-46769842 MS.gene47367:CDS
GGAGACGACACCGATGACTA+CGG 0.620045 1.1:-46770086 MS.gene47367:CDS
GGAGTGGCTACGTCCAGCAG+TGG 0.623352 1.1:-46768741 MS.gene47367:CDS
GAATGGATTACCGTAGTCAT+CGG 0.625254 1.1:+46770076 None:intergenic
CCGAAGAGCAGCAGATATGT+CGG 0.627184 1.1:+46767132 None:intergenic
GAATCTAAGAGGAAGAGACT+GGG 0.629032 1.1:-46769820 MS.gene47367:CDS
TCTAGACACTAGCTCCCTGA+AGG 0.629448 1.1:+46766873 None:intergenic
GGACTGAAGCAGTGGAGAAG+TGG 0.630009 1.1:+46770159 None:intergenic
ACTGTACCTCCACACCAAGA+CGG 0.637094 1.1:+46768414 None:intergenic
CCAGTTTCAAGCGGTAACGG+TGG 0.641657 1.1:-46769957 MS.gene47367:CDS
TTTGGATTGGACTGAAGCAG+TGG 0.647067 1.1:+46770151 None:intergenic
GCTTTGTGTGGAGAACAAGT+TGG 0.647871 1.1:-46766407 MS.gene47367:CDS
AATGGCTTCCCGTCTTGGTG+TGG 0.649204 1.1:-46768423 MS.gene47367:CDS
TTCCTGCTTCAATTTCACCT+AGG 0.664237 1.1:-46769575 MS.gene47367:CDS
CTGAAGCAGTGGAGAAGTGG+TGG 0.664467 1.1:+46770162 None:intergenic
CGGTCAAAACCAGTTTCAAG+CGG 0.669447 1.1:-46769966 MS.gene47367:CDS
GGTGGTTGTTATCGTCGTGG+AGG 0.671957 1.1:+46770249 None:intergenic
CATTGTCAAACCTTAGATGG+CGG 0.680970 1.1:-46768689 MS.gene47367:CDS
TGTGGAACAGTGTAAGAACA+AGG 0.689866 1.1:-46769748 MS.gene47367:CDS
AGTGGTGGTTGTTATCGTCG+TGG 0.691782 1.1:+46770246 None:intergenic
GTCAGCCCTGACATTCTGCG+AGG 0.718203 1.1:-46766830 MS.gene47367:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAGAAAATTATATAGAA+AGG + chr1.1:46769580-46769599 None:intergenic 10.0%
!! CATGTTTACTTTATTAATTA+TGG - chr1.1:46767479-46767498 MS.gene47367:intron 15.0%
!! TAAAGATTAAAAAGATCTTA+TGG + chr1.1:46769218-46769237 None:intergenic 15.0%
!! TTCAATGTATATTCTATTTA+TGG - chr1.1:46768461-46768480 MS.gene47367:intron 15.0%
!!! AAACATAAAATTTTCAGATT+CGG + chr1.1:46767267-46767286 None:intergenic 15.0%
!!! CTCATTTTAAAAAAGAAAAT+TGG - chr1.1:46768759-46768778 MS.gene47367:intron 15.0%
!!! GAAAATTTTATGTTTTGTTT+AGG - chr1.1:46767272-46767291 MS.gene47367:CDS 15.0%
!!! TAAGATCTTTTTAATCTTTA+TGG - chr1.1:46769218-46769237 MS.gene47367:intron 15.0%
!!! TTCTTTTATTTTCTTTTTGA+TGG + chr1.1:46768508-46768527 None:intergenic 15.0%
!! AAATTATATAGAAAGGAGTA+AGG + chr1.1:46769573-46769592 None:intergenic 20.0%
!! AATAAATTTAAGAAAGCGAA+TGG + chr1.1:46768180-46768199 None:intergenic 20.0%
!! TCTAATTGTAATAATGAACA+AGG + chr1.1:46767566-46767585 None:intergenic 20.0%
!! TTGATTTAGTTAAATGCTTA+TGG - chr1.1:46767138-46767157 MS.gene47367:CDS 20.0%
!! TTTGATGTGCTAAAAAATAA+GGG - chr1.1:46767360-46767379 MS.gene47367:intron 20.0%
!!! AATTGGAAATTTGAACTTTT+AGG - chr1.1:46768776-46768795 MS.gene47367:intron 20.0%
!!! AGTTGTAGTTTTTAATCTAT+TGG - chr1.1:46770207-46770226 MS.gene47367:CDS 20.0%
!!! TAATTTGTGAACTTGAAATA+TGG + chr1.1:46767705-46767724 None:intergenic 20.0%
!!! TATATTATTTCTTTTCCAAC+TGG - chr1.1:46768863-46768882 MS.gene47367:intron 20.0%
!!! TGCTAGTATTTTCTTTTATA+TGG - chr1.1:46770066-46770085 MS.gene47367:CDS 20.0%
!!! TTACGACAATGATTTATTTT+TGG - chr1.1:46769017-46769036 MS.gene47367:intron 20.0%
!!! TTTGCTGTTTTTGTTTTAAT+CGG - chr1.1:46767304-46767323 MS.gene47367:CDS 20.0%
! AAAGGAAGAGTTGTTATATT+TGG - chr1.1:46769464-46769483 MS.gene47367:intron 25.0%
! ATATTACAGGAATAAGAACA+AGG + chr1.1:46767857-46767876 None:intergenic 25.0%
! CAAGCATCAAAAATTCATTT+AGG + chr1.1:46769094-46769113 None:intergenic 25.0%
! CACTCCATATCTAAAAATAA+AGG + chr1.1:46767902-46767921 None:intergenic 25.0%
! CAGTTTATGAAAATAACCTT+GGG + chr1.1:46770104-46770123 None:intergenic 25.0%
! CATATCTAAAAATAAAGGAG+GGG + chr1.1:46767897-46767916 None:intergenic 25.0%
! CCATATCTAAAAATAAAGGA+GGG + chr1.1:46767898-46767917 None:intergenic 25.0%
! CTAAGCACTACAAAAATTTA+TGG + chr1.1:46770031-46770050 None:intergenic 25.0%
! CTCAATATTCACAATATTAC+AGG + chr1.1:46767870-46767889 None:intergenic 25.0%
! GAATGACATTCAAACTATAA+TGG + chr1.1:46767819-46767838 None:intergenic 25.0%
! GCTTTCTTAAATTTATTGTC+AGG - chr1.1:46768183-46768202 MS.gene47367:intron 25.0%
! GTCTGGTTATATTATATATG+TGG - chr1.1:46768094-46768113 MS.gene47367:intron 25.0%
! GTTTGATGTGCTAAAAAATA+AGG - chr1.1:46767359-46767378 MS.gene47367:intron 25.0%
! TAGATATTTAAATATGCGAC+AGG + chr1.1:46769996-46770015 None:intergenic 25.0%
! TCAAATGAAAAACAAAACTG+TGG + chr1.1:46767540-46767559 None:intergenic 25.0%
! TCAGTTTATGAAAATAACCT+TGG + chr1.1:46770105-46770124 None:intergenic 25.0%
! TCCATATCTAAAAATAAAGG+AGG + chr1.1:46767899-46767918 None:intergenic 25.0%
! TGTCGCATATTTAAATATCT+AGG - chr1.1:46769995-46770014 MS.gene47367:CDS 25.0%
! TTAGTTAAATGCTTATGGAT+TGG - chr1.1:46767143-46767162 MS.gene47367:CDS 25.0%
!! AACTTCATTTGAAACTAACA+TGG + chr1.1:46768212-46768231 None:intergenic 25.0%
!! TTCAAGTTCACAAATTACAT+GGG - chr1.1:46767708-46767727 MS.gene47367:intron 25.0%
!! TTCGATACGTTTAGATTTTA+GGG - chr1.1:46767203-46767222 MS.gene47367:CDS 25.0%
!! TTTTGATGCTTGAACTTTAT+TGG - chr1.1:46769102-46769121 MS.gene47367:intron 25.0%
!!! AGAGTTGTTCTAAAAATTAG+TGG - chr1.1:46767991-46768010 MS.gene47367:intron 25.0%
!!! AGGTTGATAATTTGAAGAAA+AGG - chr1.1:46766929-46766948 MS.gene47367:CDS 25.0%
!!! CTTTATTTTTAGATATGGAG+TGG - chr1.1:46767900-46767919 MS.gene47367:intron 25.0%
!!! GAAATTTGAACTTTTAGGTA+GGG - chr1.1:46768781-46768800 MS.gene47367:intron 25.0%
!!! TGTTCTAAAAATTAGTGGAT+CGG - chr1.1:46767996-46768015 MS.gene47367:intron 25.0%
!!! TTTCAAGTTCACAAATTACA+TGG - chr1.1:46767707-46767726 MS.gene47367:intron 25.0%
AAAGTAAACATGTAAGTCCT+GGG + chr1.1:46767471-46767490 None:intergenic 30.0%
AGTTTCAAATGAAGTTGCAA+TGG - chr1.1:46768216-46768235 MS.gene47367:intron 30.0%
ATAGAAAAGATCGAGAAGAA+TGG - chr1.1:46766749-46766768 MS.gene47367:intron 30.0%
ATGAACATCCTGATTACAAA+TGG - chr1.1:46768552-46768571 MS.gene47367:intron 30.0%
ATTTGTAATCAGGATGTTCA+TGG + chr1.1:46768553-46768572 None:intergenic 30.0%
CTTATTCTTTGTGATACTTC+AGG - chr1.1:46768327-46768346 MS.gene47367:intron 30.0%
GAGAGACATAGAATGAATAA+TGG - chr1.1:46766961-46766980 MS.gene47367:CDS 30.0%
TAAAGTAAACATGTAAGTCC+TGG + chr1.1:46767472-46767491 None:intergenic 30.0%
TCTTAAATTTGTCAGCATGA+TGG - chr1.1:46769307-46769326 MS.gene47367:intron 30.0%
TGAACATCCTGATTACAAAT+GGG - chr1.1:46768553-46768572 MS.gene47367:intron 30.0%
TTATGAATAGTCTGCTTCAT+TGG + chr1.1:46770149-46770168 None:intergenic 30.0%
TTCAATATGCTGCTAAACAA+AGG + chr1.1:46768950-46768969 None:intergenic 30.0%
TTGATTGTGTTGTCATTGTT+TGG - chr1.1:46767792-46767811 MS.gene47367:intron 30.0%
TTTATCATCATCAGCAAACT+TGG + chr1.1:46767055-46767074 None:intergenic 30.0%
! AACATTTCAAAAGCTTTGTG+TGG - chr1.1:46770238-46770257 MS.gene47367:CDS 30.0%
! ATATGAGATCAGTGTTTTCA+TGG - chr1.1:46769155-46769174 MS.gene47367:intron 30.0%
! ATCAACCACATGGATATTTT+TGG - chr1.1:46769637-46769656 MS.gene47367:CDS 30.0%
! CAATCAACTTTAGAGAAGAT+GGG - chr1.1:46769356-46769375 MS.gene47367:intron 30.0%
! CTGCAACTGTATTTCATTTT+AGG + chr1.1:46768075-46768094 None:intergenic 30.0%
! CTTCGATACGTTTAGATTTT+AGG - chr1.1:46767202-46767221 MS.gene47367:CDS 30.0%
! TAAAGTTGATTGAAGCAGTA+AGG + chr1.1:46769348-46769367 None:intergenic 30.0%
! TCAATCAACTTTAGAGAAGA+TGG - chr1.1:46769355-46769374 MS.gene47367:intron 30.0%
!! ATTGCATCTGGTCTTTTTAT+GGG - chr1.1:46769877-46769896 MS.gene47367:CDS 30.0%
!! GGAAATTTGAACTTTTAGGT+AGG - chr1.1:46768780-46768799 MS.gene47367:intron 30.0%
!! TATTGCATCTGGTCTTTTTA+TGG - chr1.1:46769876-46769895 MS.gene47367:CDS 30.0%
!!! AGATTTTAGGGTAGGATTTT+TGG - chr1.1:46767215-46767234 MS.gene47367:CDS 30.0%
!!! ATACGTTTAGATTTTAGGGT+AGG - chr1.1:46767207-46767226 MS.gene47367:CDS 30.0%
!!! CCCTCCTTTATTTTTAGATA+TGG - chr1.1:46767895-46767914 MS.gene47367:intron 30.0%
AAGCAGATGGAACATATTGT+TGG - chr1.1:46767015-46767034 MS.gene47367:intron 35.0%
AAGCTTCAGCTAAACTGAAT+AGG + chr1.1:46768306-46768325 None:intergenic 35.0%
AATATTGACCCTAAGGTTTG+TGG - chr1.1:46768042-46768061 MS.gene47367:intron 35.0%
AATGAAATACAGTTGCAGTC+TGG - chr1.1:46768077-46768096 MS.gene47367:intron 35.0%
ACAAACTTCAGTTTCAATGC+AGG - chr1.1:46769394-46769413 MS.gene47367:intron 35.0%
ACTACAACTGCACAAAGAAA+TGG + chr1.1:46770196-46770215 None:intergenic 35.0%
AGCAGATGGAACATATTGTT+GGG - chr1.1:46767016-46767035 MS.gene47367:intron 35.0%
ATAGAACAGCTAGTTGAAGT+TGG - chr1.1:46768591-46768610 MS.gene47367:intron 35.0%
ATAGTATTGCTTACCAGGAA+TGG + chr1.1:46769859-46769878 None:intergenic 35.0%
ATGCAATAGTATTGCTTACC+AGG + chr1.1:46769864-46769883 None:intergenic 35.0%
CATCTTCATGTATTGCACAT+GGG - chr1.1:46769130-46769149 MS.gene47367:intron 35.0%
CATGTGCAATACATGAAGAT+GGG + chr1.1:46769131-46769150 None:intergenic 35.0%
CGAATTGGAATTAAGAGCTT+AGG + chr1.1:46767736-46767755 None:intergenic 35.0%
CGTATGGATTCAACAACAAA+CGG - chr1.1:46766671-46766690 MS.gene47367:intron 35.0%
GCTGACAAATTTAAGAACTC+AGG + chr1.1:46769303-46769322 None:intergenic 35.0%
GGAAAGAGTAATAGATGATG+CGG + chr1.1:46769612-46769631 None:intergenic 35.0%
GGAAGAGTTGTTATATTTGG+TGG - chr1.1:46769467-46769486 MS.gene47367:intron 35.0%
GTAAGCAATACTATTGCATC+TGG - chr1.1:46769865-46769884 MS.gene47367:CDS 35.0%
GTACATTACCACAAACCTTA+GGG + chr1.1:46768053-46768072 None:intergenic 35.0%
GTGATTAATCTTACCCAACT+TGG + chr1.1:46768435-46768454 None:intergenic 35.0%
TAGAACAGCTAGTTGAAGTT+GGG - chr1.1:46768592-46768611 MS.gene47367:intron 35.0%
TCTAAAAATAAAGGAGGGGA+AGG + chr1.1:46767893-46767912 None:intergenic 35.0%
TGAGAATCAATCAAAGAGTG+TGG - chr1.1:46766891-46766910 MS.gene47367:CDS 35.0%
TGTGCTAAAAAATAAGGGAC+CGG - chr1.1:46767365-46767384 MS.gene47367:intron 35.0%
TTAAACCTCTTAGATTGCCT+AGG + chr1.1:46767102-46767121 None:intergenic 35.0%
! AAATATCCATGTGGTTGATG+TGG + chr1.1:46769636-46769655 None:intergenic 35.0%
! AAGCATTGTCAAACCTTAGA+TGG - chr1.1:46767965-46767984 MS.gene47367:intron 35.0%
! AATATCCATGTGGTTGATGT+GGG + chr1.1:46769635-46769654 None:intergenic 35.0%
! AGTTCTCATGATTTTCCTCT+AGG - chr1.1:46768263-46768282 MS.gene47367:CDS 35.0%
! ATGGAAGTTTTTGTAACCCA+AGG - chr1.1:46770085-46770104 MS.gene47367:CDS 35.0%
! CAATGCTAAGTAGTGTTACT+TGG - chr1.1:46767756-46767775 MS.gene47367:intron 35.0%
! CACACTAGGATTTGAAACTA+AGG - chr1.1:46767606-46767625 MS.gene47367:intron 35.0%
! CTAGTGTGTGTTCAGTTTTA+CGG + chr1.1:46767594-46767613 None:intergenic 35.0%
! CTTATTTGAAATCCACTGCA+AGG + chr1.1:46769972-46769991 None:intergenic 35.0%
! GTTCTCATGATTTTCCTCTA+GGG - chr1.1:46768264-46768283 MS.gene47367:CDS 35.0%
! GTTGTTATATTTGGTGGCAT+TGG - chr1.1:46769473-46769492 MS.gene47367:intron 35.0%
! GTTTTTAATCTATTGGCACC+CGG - chr1.1:46770214-46770233 MS.gene47367:CDS 35.0%
! TAGCTGTTCTATGTTTTCCT+TGG + chr1.1:46768583-46768602 None:intergenic 35.0%
! TCTAAGGTTTGACAATGCTT+TGG + chr1.1:46767965-46767984 None:intergenic 35.0%
! TTTTTAATCTATTGGCACCC+GGG - chr1.1:46770215-46770234 MS.gene47367:CDS 35.0%
!! AACTTTGACTTGTATGGGAT+TGG - chr1.1:46768671-46768690 MS.gene47367:CDS 35.0%
!! GAGTGAACTTTGACTTGTAT+GGG - chr1.1:46768666-46768685 MS.gene47367:CDS 35.0%
!! TTGCATCTGGTCTTTTTATG+GGG - chr1.1:46769878-46769897 MS.gene47367:CDS 35.0%
!!! AAAGCTTTTGAAATGTTCCC+GGG + chr1.1:46770235-46770254 None:intergenic 35.0%
!!! ATATTTGGTGGCATTGGTTT+TGG - chr1.1:46769479-46769498 MS.gene47367:intron 35.0%
!!! CAAAGCTTTTGAAATGTTCC+CGG + chr1.1:46770236-46770255 None:intergenic 35.0%
AAACCAGTTTCAAGCGGTAA+CGG - chr1.1:46766697-46766716 MS.gene47367:intron 40.0%
AAATTTACGCAGCTGAATCG+AGG - chr1.1:46766814-46766833 MS.gene47367:intron 40.0%
AACCTTAGGGTCAATATTGC+AGG + chr1.1:46768040-46768059 None:intergenic 40.0%
AAGAGTAATAGATGATGCGG+AGG + chr1.1:46769609-46769628 None:intergenic 40.0%
AATTTACGCAGCTGAATCGA+GGG - chr1.1:46766815-46766834 MS.gene47367:CDS 40.0%
ACAACTGCACAAAGAAATGG+TGG + chr1.1:46770193-46770212 None:intergenic 40.0%
AGAGTAATAGATGATGCGGA+GGG + chr1.1:46769608-46769627 None:intergenic 40.0%
AGATGTACTGCATACCAAGT+TGG - chr1.1:46768418-46768437 MS.gene47367:intron 40.0%
AGCAAAATACAAGACCCTAG+AGG + chr1.1:46768281-46768300 None:intergenic 40.0%
AGGGTCAATATTGCAGGTAT+CGG + chr1.1:46768034-46768053 None:intergenic 40.0%
CACTACTTAGCATTGCGAAT+TGG + chr1.1:46767751-46767770 None:intergenic 40.0%
CATTGTCAAACCTTAGATGG+CGG - chr1.1:46767968-46767987 MS.gene47367:intron 40.0%
CCATCTTCATGTATTGCACA+TGG - chr1.1:46769129-46769148 MS.gene47367:intron 40.0%
CCATGTGCAATACATGAAGA+TGG + chr1.1:46769132-46769151 None:intergenic 40.0%
CGTAAAACTGAACACACACT+AGG - chr1.1:46767592-46767611 MS.gene47367:intron 40.0%
CTTCAGGTAGCAATTGTTGT+TGG - chr1.1:46768343-46768362 MS.gene47367:intron 40.0%
GAATCTAAGAGGAAGAGACT+GGG - chr1.1:46766837-46766856 MS.gene47367:CDS 40.0%
GATGTACTGCATACCAAGTT+GGG - chr1.1:46768419-46768438 MS.gene47367:intron 40.0%
GATTACAAATGGGTGATCCA+AGG - chr1.1:46768563-46768582 MS.gene47367:intron 40.0%
GCTTGCCAAAAATATCCATG+TGG + chr1.1:46769645-46769664 None:intergenic 40.0%
GGTACATTACCACAAACCTT+AGG + chr1.1:46768054-46768073 None:intergenic 40.0%
GTTGCATTTCTGCTAGTCAT+TGG - chr1.1:46766983-46767002 MS.gene47367:intron 40.0%
TACCTGCAATATTGACCCTA+AGG - chr1.1:46768035-46768054 MS.gene47367:intron 40.0%
TAGCTTCAATGGTGAGTGAA+CGG - chr1.1:46766866-46766885 MS.gene47367:CDS 40.0%
TATTGTTGGGAATTCGCTTC+CGG - chr1.1:46767029-46767048 MS.gene47367:intron 40.0%
TCTGCAGGTGAGACTAAATA+TGG - chr1.1:46767629-46767648 MS.gene47367:intron 40.0%
TGGATCACCCATTTGTAATC+AGG + chr1.1:46768563-46768582 None:intergenic 40.0%
TGTGGAACAGTGTAAGAACA+AGG - chr1.1:46766909-46766928 MS.gene47367:CDS 40.0%
TGTTCCATCTGCTTAAACCA+AGG + chr1.1:46767009-46767028 None:intergenic 40.0%
TTCCTGCTTCAATTTCACCT+AGG - chr1.1:46767082-46767101 MS.gene47367:intron 40.0%
TTTAGGTAGGGCTGTAAATG+TGG - chr1.1:46768793-46768812 MS.gene47367:intron 40.0%
TTTCACCTAGGCAATCTAAG+AGG - chr1.1:46767094-46767113 MS.gene47367:intron 40.0%
TTTCGAGCACATATCCTTCA+GGG - chr1.1:46769770-46769789 MS.gene47367:CDS 40.0%
! ATATCCATGTGGTTGATGTG+GGG + chr1.1:46769634-46769653 None:intergenic 40.0%
! ATGCTCCATTACTCCTTTTC+CGG - chr1.1:46767438-46767457 MS.gene47367:intron 40.0%
! ATTTCTTCTGTGGTGATGCA+TGG - chr1.1:46768374-46768393 MS.gene47367:intron 40.0%
! ATTTTCCTCGCAGAATGTCA+GGG + chr1.1:46769835-46769854 None:intergenic 40.0%
! GATATGTCGGTTGAGAAAAG+TGG + chr1.1:46769515-46769534 None:intergenic 40.0%
! GATTTGAAACTAAGGTCTGC+AGG - chr1.1:46767614-46767633 MS.gene47367:intron 40.0%
! TTGACAATGCTTTGGACTTC+AGG + chr1.1:46767957-46767976 None:intergenic 40.0%
! TTTCTTCTGTGGTGATGCAT+GGG - chr1.1:46768375-46768394 MS.gene47367:intron 40.0%
!! AATATTGCAGGTATCGGATC+CGG + chr1.1:46768028-46768047 None:intergenic 40.0%
!! GAATGGATTACCGTAGTCAT+CGG + chr1.1:46766584-46766603 None:intergenic 40.0%
!! GCTAAGTAGTGTTACTTGGA+TGG - chr1.1:46767760-46767779 MS.gene47367:intron 40.0%
!! GGAGTGAACTTTGACTTGTA+TGG - chr1.1:46768665-46768684 MS.gene47367:CDS 40.0%
!! TGCATCTGGTCTTTTTATGG+GGG - chr1.1:46769879-46769898 MS.gene47367:CDS 40.0%
!!! TCTTTTTATGGGGGTGTTTC+AGG - chr1.1:46769888-46769907 MS.gene47367:CDS 40.0%
AAGGTCAGATGTGCAACTCT+AGG + chr1.1:46768931-46768950 None:intergenic 45.0%
ACAGTGCCAATTTAACCTCC+CGG + chr1.1:46768835-46768854 None:intergenic 45.0%
AGCTAGTTGAAGTTGGGATG+TGG - chr1.1:46768598-46768617 MS.gene47367:intron 45.0%
ATCAGCAAAGCACATCCAGT+TGG + chr1.1:46768881-46768900 None:intergenic 45.0%
ATTCTCCATGTTCCTTGCAG+TGG - chr1.1:46769957-46769976 MS.gene47367:CDS 45.0%
CAATCCCGGAAAAGGAGTAA+TGG + chr1.1:46767446-46767465 None:intergenic 45.0%
CATCTACGTTGGTACCTTTG+AGG + chr1.1:46769713-46769732 None:intergenic 45.0%
CGGTCAAAACCAGTTTCAAG+CGG - chr1.1:46766691-46766710 MS.gene47367:intron 45.0%
CTGAACCGTACAATAGGCAA+CGG - chr1.1:46769423-46769442 MS.gene47367:intron 45.0%
CTGAATCGAGGGAATCTAAG+AGG - chr1.1:46766826-46766845 MS.gene47367:CDS 45.0%
CTGGGAAGAAGTAGCTTCAA+TGG - chr1.1:46766855-46766874 MS.gene47367:CDS 45.0%
CTTTCGAGCACATATCCTTC+AGG - chr1.1:46769769-46769788 MS.gene47367:CDS 45.0%
GAAATCCACTGCAAGGAACA+TGG + chr1.1:46769965-46769984 None:intergenic 45.0%
GCTAGTTGAAGTTGGGATGT+GGG - chr1.1:46768599-46768618 MS.gene47367:intron 45.0%
GCTTTGTGTGGAGAACAAGT+TGG - chr1.1:46770250-46770269 MS.gene47367:CDS 45.0%
GGAATCTAAGAGGAAGAGAC+TGG - chr1.1:46766836-46766855 MS.gene47367:CDS 45.0%
GGAGGTCGTAATTTCTTCTG+TGG - chr1.1:46768364-46768383 MS.gene47367:intron 45.0%
GGCACACTTATTGACCAAAC+TGG - chr1.1:46770271-46770290 MS.gene47367:CDS 45.0%
GTCATATACGCCATCTACGT+TGG + chr1.1:46769724-46769743 None:intergenic 45.0%
TCATCATCAGCAAACTTGGC+CGG + chr1.1:46767051-46767070 None:intergenic 45.0%
TCCTTTCTCAAGATGCCTGA+TGG + chr1.1:46769450-46769469 None:intergenic 45.0%
TCTATACTCTGCTCCTACTC+CGG + chr1.1:46766734-46766753 None:intergenic 45.0%
TGAACCGTACAATAGGCAAC+GGG - chr1.1:46769424-46769443 MS.gene47367:intron 45.0%
TGCCTAGGTGAAATTGAAGC+AGG + chr1.1:46767087-46767106 None:intergenic 45.0%
TGGATCATTGGAGTGCAAAG+AGG - chr1.1:46768724-46768743 MS.gene47367:CDS 45.0%
TTTGCACTCCAATGATCCAG+AGG + chr1.1:46768723-46768742 None:intergenic 45.0%
! AGGTGGTGATGTGTTTGGAT+TGG + chr1.1:46766522-46766541 None:intergenic 45.0%
! ATTAGTGGATCGGCACTTAC+CGG - chr1.1:46768006-46768025 MS.gene47367:intron 45.0%
! CAGGTAGCAATTGTTGTTGG+AGG - chr1.1:46768346-46768365 MS.gene47367:intron 45.0%
! CATTTTCCTCGCAGAATGTC+AGG + chr1.1:46769836-46769855 None:intergenic 45.0%
! CGTTTGCTGAACCGTACAAT+AGG - chr1.1:46769417-46769436 MS.gene47367:intron 45.0%
! TATCCATGTGGTTGATGTGG+GGG + chr1.1:46769633-46769652 None:intergenic 45.0%
! TCAGATGTGCAACTCTAGGA+AGG + chr1.1:46768927-46768946 None:intergenic 45.0%
! TGCTCCATTACTCCTTTTCC+GGG - chr1.1:46767439-46767458 MS.gene47367:intron 45.0%
! TTTCTGCTAGTCATTGGCCT+TGG - chr1.1:46766989-46767008 MS.gene47367:intron 45.0%
! TTTGGATTGGACTGAAGCAG+TGG + chr1.1:46766509-46766528 None:intergenic 45.0%
!! AAAGAGAGCATCTTGGTGAC+AGG - chr1.1:46768622-46768641 MS.gene47367:intron 45.0%
!! ATGTGGGAAAGAGAGCATCT+TGG - chr1.1:46768615-46768634 MS.gene47367:intron 45.0%
!! CTCAAAGGTACCAACGTAGA+TGG - chr1.1:46769711-46769730 MS.gene47367:CDS 45.0%
!! GATTGGTAGTGCCAATTGCA+TGG - chr1.1:46768688-46768707 MS.gene47367:CDS 45.0%
!! GTAGTGTTACTTGGATGGAG+TGG - chr1.1:46767765-46767784 MS.gene47367:intron 45.0%
!! TTGGCCTTGGTTTAAGCAGA+TGG - chr1.1:46767002-46767021 MS.gene47367:intron 45.0%
AACTGCCTCCTCTGGATCAT+TGG - chr1.1:46768712-46768731 MS.gene47367:CDS 50.0%
AATCCATTCGACGATGACGC+TGG - chr1.1:46766595-46766614 MS.gene47367:intron 50.0%
AATGCTCAGGCTGTCCTCAA+AGG - chr1.1:46769696-46769715 MS.gene47367:CDS 50.0%
ACTGTACCTCCACACCAAGA+CGG + chr1.1:46768246-46768265 None:intergenic 50.0%
AGGGCTGTAAATGTGGAGTG+AGG - chr1.1:46768800-46768819 MS.gene47367:intron 50.0%
AGTGGTGGTTGTTATCGTCG+TGG + chr1.1:46766414-46766433 None:intergenic 50.0%
ATGGCCCGTTGCCTATTGTA+CGG + chr1.1:46769431-46769450 None:intergenic 50.0%
CACGAACATCTGACGTTGTC+CGG + chr1.1:46767387-46767406 None:intergenic 50.0%
CAGGGCTGACATATCCATAG+AGG + chr1.1:46769817-46769836 None:intergenic 50.0%
CCGAAGAGCAGCAGATATGT+CGG + chr1.1:46769528-46769547 None:intergenic 50.0%
CCGACATATCTGCTGCTCTT+CGG - chr1.1:46769525-46769544 MS.gene47367:intron 50.0%
CGACATATCTGCTGCTCTTC+GGG - chr1.1:46769526-46769545 MS.gene47367:intron 50.0%
CTGCTCTGCAGTTAATGCTC+AGG - chr1.1:46769683-46769702 MS.gene47367:CDS 50.0%
GAACAACTCTCCGCCATCTA+AGG + chr1.1:46767981-46768000 None:intergenic 50.0%
GAACCACCGGGAGGTTAAAT+TGG - chr1.1:46768826-46768845 MS.gene47367:intron 50.0%
GATGCATGGGTAACTGCAAC+AGG - chr1.1:46768388-46768407 MS.gene47367:intron 50.0%
GCCATCAGGCATCTTGAGAA+AGG - chr1.1:46769446-46769465 MS.gene47367:intron 50.0%
GTAAGTCCTGGGTTCAATCC+CGG + chr1.1:46767460-46767479 None:intergenic 50.0%
GTTTACTTGACCTCCACTGC+TGG + chr1.1:46767932-46767951 None:intergenic 50.0%
TCTAGACACTAGCTCCCTGA+AGG + chr1.1:46769787-46769806 None:intergenic 50.0%
TGCGAGGAAAATGCCATTCC+TGG - chr1.1:46769843-46769862 MS.gene47367:CDS 50.0%
TGTGATGCAACGACGTCGTA+TGG - chr1.1:46766655-46766674 MS.gene47367:intron 50.0%
TTCAGGGAGCTAGTGTCTAG+AGG - chr1.1:46769786-46769805 MS.gene47367:CDS 50.0%
TTTCCCCCACATCAACCACA+TGG - chr1.1:46769627-46769646 MS.gene47367:CDS 50.0%
!! GTCTAGAGGTGTCACCTCTA+TGG - chr1.1:46769800-46769819 MS.gene47367:CDS 50.0%
AATGGCTTCCCGTCTTGGTG+TGG - chr1.1:46768234-46768253 MS.gene47367:intron 55.0%
ACAATAGGCAACGGGCCATC+AGG - chr1.1:46769432-46769451 MS.gene47367:intron 55.0%
CAAAGTTCACTCCCCAGCTG+TGG + chr1.1:46768658-46768677 None:intergenic 55.0%
CCACCGTTACCGCTTGAAAC+TGG + chr1.1:46766703-46766722 None:intergenic 55.0%
CCTGGGTTCAATCCCGGAAA+AGG + chr1.1:46767454-46767473 None:intergenic 55.0%
CTACCAGCGTCATCGTCGAA+TGG + chr1.1:46766601-46766620 None:intergenic 55.0%
CTGAAGCAGTGGAGAAGTGG+TGG + chr1.1:46766498-46766517 None:intergenic 55.0%
CTGTACCTCCACACCAAGAC+GGG + chr1.1:46768245-46768264 None:intergenic 55.0%
GCACTCCAATGATCCAGAGG+AGG + chr1.1:46768720-46768739 None:intergenic 55.0%
GGACTGAAGCAGTGGAGAAG+TGG + chr1.1:46766501-46766520 None:intergenic 55.0%
GGAGACGACACCGATGACTA+CGG - chr1.1:46766571-46766590 MS.gene47367:intron 55.0%
GGAGGCAGTTGCCATGCAAT+TGG + chr1.1:46768702-46768721 None:intergenic 55.0%
GGTGGTTGTTATCGTCGTGG+AGG + chr1.1:46766411-46766430 None:intergenic 55.0%
GTGCCAATTTAACCTCCCGG+TGG + chr1.1:46768832-46768851 None:intergenic 55.0%
GTTGCAATGGCTTCCCGTCT+TGG - chr1.1:46768229-46768248 MS.gene47367:intron 55.0%
TGGAGTGAGGTCAGAACCAC+CGG - chr1.1:46768813-46768832 MS.gene47367:intron 55.0%
! AGAAGTGGTGGTGAGAGTGG+TGG + chr1.1:46766486-46766505 None:intergenic 55.0%
! AGCATCTTGGTGACAGGCCA+GGG - chr1.1:46768628-46768647 MS.gene47367:CDS 55.0%
! CCAGTTTCAAGCGGTAACGG+TGG - chr1.1:46766700-46766719 MS.gene47367:intron 55.0%
! CCTTTTCCGGGATTGAACCC+AGG - chr1.1:46767451-46767470 MS.gene47367:intron 55.0%
! GACGGAGGTGGTGATGTGTT+TGG + chr1.1:46766527-46766546 None:intergenic 55.0%
! GTTTCAAGCGGTAACGGTGG+AGG - chr1.1:46766703-46766722 MS.gene47367:intron 55.0%
! TGGAGAAGTGGTGGTGAGAG+TGG + chr1.1:46766489-46766508 None:intergenic 55.0%
!!! GGTGGCATTGGTTTTGGTGC+TGG - chr1.1:46769485-46769504 MS.gene47367:intron 55.0%
GAGAGTGGTGGTTGTGGTGG+TGG + chr1.1:46766474-46766493 None:intergenic 60.0%
GCTGCTCTTCGGGCTTCAGA+GGG - chr1.1:46769536-46769555 MS.gene47367:intron 60.0%
GGAGTGAGGTCAGAACCACC+GGG - chr1.1:46768814-46768833 MS.gene47367:intron 60.0%
GGTGAGAGTGGTGGTTGTGG+TGG + chr1.1:46766477-46766496 None:intergenic 60.0%
GGTGAGGTGCGAAGGTTTGG+TGG + chr1.1:46766453-46766472 None:intergenic 60.0%
GGTGGTGAGAGTGGTGGTTG+TGG + chr1.1:46766423-46766442 None:intergenic 60.0%
GGTGGTGAGGTGCGAAGGTT+TGG + chr1.1:46766456-46766475 None:intergenic 60.0%
GTCAGCCCTGACATTCTGCG+AGG - chr1.1:46769827-46769846 MS.gene47367:CDS 60.0%
TGCATGGCAACTGCCTCCTC+TGG - chr1.1:46768704-46768723 MS.gene47367:CDS 60.0%
TGCTGCTCTTCGGGCTTCAG+AGG - chr1.1:46769535-46769554 MS.gene47367:intron 60.0%
! GAGCATCTTGGTGACAGGCC+AGG - chr1.1:46768627-46768646 MS.gene47367:CDS 60.0%
! TCTTGGTGACAGGCCAGGGA+AGG - chr1.1:46768632-46768651 MS.gene47367:CDS 60.0%
!! AGGTTTGGTGGAGGTGGTGG+TGG + chr1.1:46766441-46766460 None:intergenic 60.0%
!! CGAAGGTTTGGTGGAGGTGG+TGG + chr1.1:46766444-46766463 None:intergenic 60.0%
!! GAGGTGCGAAGGTTTGGTGG+AGG + chr1.1:46766450-46766469 None:intergenic 60.0%
!! GTGCGAAGGTTTGGTGGAGG+TGG + chr1.1:46766447-46766466 None:intergenic 60.0%
!! TGGTGGTTGTGGTGGTGGTG+AGG + chr1.1:46766469-46766488 None:intergenic 60.0%
GGAGTGGCTACGTCCAGCAG+TGG - chr1.1:46767916-46767935 MS.gene47367:intron 65.0%
GTGAGGTCAGAACCACCGGG+AGG - chr1.1:46768817-46768836 MS.gene47367:intron 65.0%
GTGGCTACGTCCAGCAGTGG+AGG - chr1.1:46767919-46767938 MS.gene47367:intron 65.0%
! GGCTTCCCGTCTTGGTGTGG+AGG - chr1.1:46768237-46768256 MS.gene47367:intron 65.0%
! GGTAACGGTGGAGGAAGCGC+CGG - chr1.1:46766712-46766731 MS.gene47367:intron 65.0%
! GGTGTCGTCTCCGTCGTCGT+CGG + chr1.1:46766563-46766582 None:intergenic 65.0%
!! GGAGGTGGTGGTGGTGAGAG+TGG + chr1.1:46766432-46766451 None:intergenic 65.0%
!! GGTGGTGGTGGTGAGAGTGG+TGG + chr1.1:46766429-46766448 None:intergenic 65.0%
!! GTGGTGGTGGTGAGGTGCGA+AGG + chr1.1:46766461-46766480 None:intergenic 65.0%
AGGCCAGGGAAGGCCACAGC+TGG - chr1.1:46768642-46768661 MS.gene47367:CDS 70.0%
GCCAGGGAAGGCCACAGCTG+GGG - chr1.1:46768644-46768663 MS.gene47367:CDS 70.0%
GGCCAGGGAAGGCCACAGCT+GGG - chr1.1:46768643-46768662 MS.gene47367:CDS 70.0%
GTCTCCGTCGTCGTCGGCGA+CGG + chr1.1:46766557-46766576 None:intergenic 70.0%
TCCCCAGCTGTGGCCTTCCC+TGG + chr1.1:46768648-46768667 None:intergenic 70.0%
!! GGTGGAGGAAGCGCCGGAGT+AGG - chr1.1:46766718-46766737 MS.gene47367:intron 70.0%
TCCGTCGTCGTCGGCGACGG+CGG + chr1.1:46766554-46766573 None:intergenic 75.0%
! GACGGCGGCGGAGACGGAGG+TGG + chr1.1:46766539-46766558 None:intergenic 80.0%
! GCCGCCGTCGCCGACGACGA+CGG - chr1.1:46766550-46766569 MS.gene47367:intron 80.0%
! GTCGGCGACGGCGGCGGAGA+CGG + chr1.1:46766545-46766564 None:intergenic 80.0%
! GTCGTCGTCGGCGACGGCGG+CGG + chr1.1:46766551-46766570 None:intergenic 80.0%
! GGCGACGGCGGCGGAGACGG+AGG + chr1.1:46766542-46766561 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 46766373 46770306 46766373 ID=MS.gene47367
chr1.1 mRNA 46766373 46770306 46766373 ID=MS.gene47367.t1;Parent=MS.gene47367
chr1.1 exon 46769564 46770306 46769564 ID=MS.gene47367.t1.exon1;Parent=MS.gene47367.t1
chr1.1 CDS 46769564 46770306 46769564 ID=cds.MS.gene47367.t1;Parent=MS.gene47367.t1
chr1.1 exon 46768623 46768767 46768623 ID=MS.gene47367.t1.exon2;Parent=MS.gene47367.t1
chr1.1 CDS 46768623 46768767 46768623 ID=cds.MS.gene47367.t1;Parent=MS.gene47367.t1
chr1.1 exon 46768421 46768474 46768421 ID=MS.gene47367.t1.exon3;Parent=MS.gene47367.t1
chr1.1 CDS 46768421 46768474 46768421 ID=cds.MS.gene47367.t1;Parent=MS.gene47367.t1
chr1.1 exon 46768239 46768330 46768239 ID=MS.gene47367.t1.exon4;Parent=MS.gene47367.t1
chr1.1 CDS 46768239 46768330 46768239 ID=cds.MS.gene47367.t1;Parent=MS.gene47367.t1
chr1.1 exon 46767122 46767357 46767122 ID=MS.gene47367.t1.exon5;Parent=MS.gene47367.t1
chr1.1 CDS 46767122 46767357 46767122 ID=cds.MS.gene47367.t1;Parent=MS.gene47367.t1
chr1.1 exon 46766815 46766985 46766815 ID=MS.gene47367.t1.exon6;Parent=MS.gene47367.t1
chr1.1 CDS 46766815 46766985 46766815 ID=cds.MS.gene47367.t1;Parent=MS.gene47367.t1
chr1.1 exon 46766373 46766470 46766373 ID=MS.gene47367.t1.exon7;Parent=MS.gene47367.t1
chr1.1 CDS 46766373 46766470 46766373 ID=cds.MS.gene47367.t1;Parent=MS.gene47367.t1
Gene Sequence

>MS.gene47367

ATGGCTTCTTGCGACGACGACGACGATTTCTCTCTCCTCCACGACGATAACAACCACCACTCTCACCACCACCACCTCCACCAAACCTTCGCACCTCACCACCACCACAACCACCACTCTCACCACCACTTCTCCACTGCTTCAGTCCAATCCAAACACATCACCACCTCCGTCTCCGCCGCCGTCGCCGACGACGACGGAGACGACACCGATGACTACGGTAATCCATTCGACGATGACGCTGGTAGCGAGAAACGTAAAGATCGAGATCGCGATGAGATCTGTGATGCAACGACGTCGTATGGATTCAACAACAAACGGTCAAAACCAGTTTCAAGCGGTAACGGTGGAGGAAGCGCCGGAGTAGGAGCAGAGTATAGAAAAGATCGAGAAGAATGGAGTGATACAGCGATAGTGTGTTTACTCGAAGCTTATACAGAGAAATTTACGCAGCTGAATCGAGGGAATCTAAGAGGAAGAGACTGGGAAGAAGTAGCTTCAATGGTGAGTGAACGGTGTGAGAATCAATCAAAGAGTGTGGAACAGTGTAAGAACAAGGTTGATAATTTGAAGAAAAGGTATAAGCTAGAGAGACATAGAATGAATAATGGTTGCATTTCTGCTAGTCATTGGCCTTGGTTTAAGCAGATGGAACATATTGTTGGGAATTCGCTTCCGGCCAAGTTTGCTGATGATGATAAAGCTATTGTTCCTGCTTCAATTTCACCTAGGCAATCTAAGAGGTTTAATCTGTTTCATAAATGCTTGATTTAGTTAAATGCTTATGGATTGGTATAATGTGAAAATTCAAAACTTTATGACATTACTTCTTCGATACGTTTAGATTTTAGGGTAGGATTTTTGGAATAAATAGACTATCTTTGTGTTTGACCGAATCTGAAAATTTTATGTTTTGTTTAGGTGTGTTGCATTTGCTGTTTTTGTTTTAATCGGCAAATGTTAGTTGTTAGATTAAATATTTACGCGTTTGATGTGCTAAAAAATAAGGGACCGGACAACGTCAGATGTTCGTGTTTGTCTTGTGCTCTTTTGTTCAGTACTTAAATGCTCCATTACTCCTTTTCCGGGATTGAACCCAGGACTTACATGTTTACTTTATTAATTATGGTGTTTACAAATCTTGTGTTTGACTGTGCTCTATAACCACAGTTTTGTTTTTCATTTGAGTACCTTGTTCATTATTACAATTAGATTCTTCCGTAAAACTGAACACACACTAGGATTTGAAACTAAGGTCTGCAGGTGAGACTAAATATGGAAGTTTTCTTCAATTGTATTGTTGCAATCTATATCATGATATCTTCAAGACCATATTTCAAGTTCACAAATTACATGGGAACCTAAGCTCTTAATTCCAATTCGCAATGCTAAGTAGTGTTACTTGGATGGAGTGGCATATTGATTGTGTTGTCATTGTTTGGACCATTATAGTTTGAATGTCATTCATCATGCACTGTTTTCCTTGTTCTTATTCCTGTAATATTGTGAATATTGAGCCTTCCCCTCCTTTATTTTTAGATATGGAGTGGCTACGTCCAGCAGTGGAGGTCAAGTAAACAGCCTGAAGTCCAAAGCATTGTCAAACCTTAGATGGCGGAGAGTTGTTCTAAAAATTAGTGGATCGGCACTTACCGGATCCGATACCTGCAATATTGACCCTAAGGTTTGTGGTAATGTACCTAAAATGAAATACAGTTGCAGTCTGGTTATATTATATATGTGGAAAGTTGACTCATGATCATAGTCTATAGTAAGAAGTCTAATTGTTATGACAAAGCTTACTCCATTCGCTTTCTTAAATTTATTGTCAGGTCGCCATGTTAGTTTCAAATGAAGTTGCAATGGCTTCCCGTCTTGGTGTGGAGGTACAGTTCTCATGATTTTCCTCTAGGGTCTTGTATTTTGCTATCCTATTCAGTTTAGCTGAAGCTTGCTTATTCTTTGTGATACTTCAGGTAGCAATTGTTGTTGGAGGTCGTAATTTCTTCTGTGGTGATGCATGGGTAACTGCAACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGGTAAGATTAATCACTAAAAGTTCAATGTATATTCTATTTATGGTCTTGCAATTTTACTAGAAATCCATCAAAAAGAAAATAAAAGAAAAAAAAAAATAGATTTAGATAACCATGAACATCCTGATTACAAATGGGTGATCCAAGGAAAACATAGAACAGCTAGTTGAAGTTGGGATGTGGGAAAGAGAGCATCTTGGTGACAGGCCAGGGAAGGCCACAGCTGGGGAGTGAACTTTGACTTGTATGGGATTGGTAGTGCCAATTGCATGGCAACTGCCTCCTCTGGATCATTGGAGTGCAAAGAGGACTAAGACTCATCTCATTTTAAAAAAGAAAATTGGAAATTTGAACTTTTAGGTAGGGCTGTAAATGTGGAGTGAGGTCAGAACCACCGGGAGGTTAAATTGGCACTGTGCTTTGTCTATATTATTTCTTTTCCAACTGGATGTGCTTTGCTGATGATTTGCATAAGCTTCATCACATCCTTCCTAGAGTTGCACATCTGACCTTTGTTTAGCAGCATATTGAAATTTGTGCAGTTTTGATTTTATGATGAATAAGTTTATATTGAAATACTTACGACAATGATTTATTTTTGGACAGTTTTACTTGTCAACTTTTGTTATATTTTTTTTCGTTTTCATCAAAAGCCTAAATGAATTTTTGATGCTTGAACTTTATTGGCATCCCATCTTCATGTATTGCACATGGGTAATATGAGATCAGTGTTTTCATGGCTTCTAGTTCATTAGATTAGATGTTGCACTTATGCTGCCATAAGATCTTTTTAATCTTTATGGTTAATATATCTTCTAAAGTGATTTGTTTTTTTCTTTCTTTCTACATTTTAAAATATTGACCTGAGTTCTTAAATTTGTCAGCATGATGGCAACTGTGATGAACTCCTTACTGCTTCAATCAACTTTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTTCAATGCAGGCGTTTGCTGAACCGTACAATAGGCAACGGGCCATCAGGCATCTTGAGAAAGGAAGAGTTGTTATATTTGGTGGCATTGGTTTTGGTGCTGGTAATCCACTTTTCTCAACCGACATATCTGCTGCTCTTCGGGCTTCAGAGGGTATGCTTCTGTCCTTACTCCTTTCTATATAATTTTCTATTACTCTTCCCTCCGCATCATCTATTACTCTTTCCCCCACATCAACCACATGGATATTTTTGGCAAGCATAATTAGCGCATGTTATCTGCTCTGCAGTTAATGCTCAGGCTGTCCTCAAAGGTACCAACGTAGATGGCGTATATGACTGCAACTCACGAGACAACAATTTCACTTTCGAGCACATATCCTTCAGGGAGCTAGTGTCTAGAGGTGTCACCTCTATGGATATGTCAGCCCTGACATTCTGCGAGGAAAATGCCATTCCTGGTAAGCAATACTATTGCATCTGGTCTTTTTATGGGGGTGTTTCAGGTTGTGCTGCTTTAGATATTGTTCAATACACAATACAATGCATTGTCATTCTCCATGTTCCTTGCAGTGGATTTCAAATAAGTCCTGTCGCATATTTAAATATCTAGGCACATCTATGCCATAAATTTTTGTAGTGCTTAGCTGTTGTTCTCATAGTGCTAGTATTTTCTTTTATATGGAAGTTTTTGTAACCCAAGGTTATTTTCATAAACTGATGATGATACTCGTTGAAGTAACCAATGAAGCAGACTATTCATAACAATCTATTTGATGCGTTTTTCCACCATTTCTTTGTGCAGTTGTAGTTTTTAATCTATTGGCACCCGGGAACATTTCAAAAGCTTTGTGTGGAGAACAAGTTGGCACACTTATTGACCAAACTGGAGCAATAAGCTAA
Protein sequence

>MS.gene47367.t1

MASCDDDDDFSLLHDDNNHHSHHHHLHQTFAPHHHHNHHSHHHFSTASVQSKHITTSVSAAVADDDGDDTDDYGNPFDDDAGSEKRKDRDRDEICDATTSYGFNNKRSKPVSSGNGGGSAGVGAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVASMVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISASHWPWFKQMEHIVGNSLPAKFADDDKAIVPASISPRQSKRYGVATSSSGGQVNSLKSKALSNLRWRRVVLKISGSALTGSDTCNIDPKVAMLVSNEVAMASRLGVEVAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSLLLQSTLEKMGVQTRVQTSVSMQAFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGNPLFSTDISAALRASEVNAQAVLKGTNVDGVYDCNSRDNNFTFEHISFRELVSRGVTSMDMSALTFCEENAIPVVVFNLLAPGNISKALCGEQVGTLIDQTGAIS