Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47369.t1 | XP_003590397.1 | 65.1 | 318 | 33 | 3 | 18 | 257 | 111 | 428 | 4.70E-97 | 364.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47369.t1 | A7UQU9 | 65.1 | 318 | 33 | 3 | 18 | 257 | 111 | 428 | 3.4e-97 | 364.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene47369.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47369.t1 | MTR_1g061640 | 97.126 | 174 | 5 | 0 | 1 | 174 | 94 | 267 | 6.44e-125 | 365 |
| MS.gene47369.t1 | MTR_1g061640 | 94.059 | 101 | 3 | 1 | 174 | 274 | 348 | 445 | 3.62e-57 | 191 |
| MS.gene47369.t1 | MTR_7g103390 | 78.977 | 176 | 34 | 1 | 1 | 176 | 74 | 246 | 1.91e-97 | 293 |
| MS.gene47369.t1 | MTR_7g103390 | 42.353 | 85 | 43 | 1 | 190 | 274 | 326 | 404 | 4.26e-15 | 75.1 |
| MS.gene47369.t1 | MTR_2g098080 | 44.000 | 300 | 139 | 6 | 1 | 274 | 81 | 377 | 2.14e-69 | 221 |
| MS.gene47369.t1 | MTR_1g098920 | 40.938 | 320 | 143 | 9 | 2 | 275 | 92 | 411 | 1.41e-66 | 214 |
| MS.gene47369.t1 | MTR_6g035315 | 42.574 | 303 | 120 | 8 | 21 | 274 | 110 | 407 | 2.04e-60 | 200 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47369.t1 | AT3G10040 | 54.608 | 293 | 101 | 6 | 12 | 274 | 87 | 377 | 1.79e-90 | 275 |
| MS.gene47369.t1 | AT1G21200 | 58.385 | 161 | 59 | 3 | 1 | 156 | 85 | 242 | 1.57e-57 | 190 |
| MS.gene47369.t1 | AT1G21200 | 58.385 | 161 | 59 | 3 | 1 | 156 | 85 | 242 | 1.57e-57 | 190 |
| MS.gene47369.t1 | AT1G76870 | 39.667 | 300 | 138 | 7 | 1 | 272 | 60 | 344 | 2.29e-57 | 188 |
| MS.gene47369.t1 | AT1G76870 | 39.667 | 300 | 138 | 7 | 1 | 272 | 60 | 344 | 2.29e-57 | 188 |
| MS.gene47369.t1 | AT1G76870 | 39.667 | 300 | 138 | 7 | 1 | 272 | 60 | 344 | 2.29e-57 | 188 |
Find 61 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTTCAGCTGGAAAATT+TGG | 0.137646 | 1.1:+46790919 | None:intergenic |
| CTAACTTCATCTTTCATCTT+AGG | 0.178877 | 1.1:+46790547 | None:intergenic |
| TCAAGGGCTATGATGGAAAA+AGG | 0.210514 | 1.1:-46790712 | MS.gene47369:CDS |
| AGTTTAATGATTTGAATAAA+AGG | 0.261559 | 1.1:-46790657 | MS.gene47369:CDS |
| TCAAGGATTGTTGGATTCAA+TGG | 0.337077 | 1.1:-46790578 | MS.gene47369:CDS |
| GGTTGTTCAAAGGGTCAAAT+TGG | 0.342793 | 1.1:-46790169 | MS.gene47369:CDS |
| TTCCACTTCCACCCTCTACT+TGG | 0.350671 | 1.1:+46790428 | None:intergenic |
| TTGAAAAGCAAAGGTTGAAA+TGG | 0.354388 | 1.1:-46789901 | MS.gene47369:CDS |
| GCTCTGGTGGTGATCCAAAA+AGG | 0.376950 | 1.1:-46790897 | MS.gene47369:CDS |
| CAGTTGGAGGAACAGAAAAT+AGG | 0.378255 | 1.1:-46789947 | MS.gene47369:CDS |
| AATGGTAAGGCTATTGATAA+TGG | 0.397789 | 1.1:-46790836 | MS.gene47369:CDS |
| CTAAGATGAAAGATGAAGTT+AGG | 0.406494 | 1.1:-46790546 | MS.gene47369:CDS |
| ATCTGTTTCAAGGGCTATGA+TGG | 0.408066 | 1.1:-46790719 | MS.gene47369:CDS |
| AAGATGGAGGGAAGAGTCCT+TGG | 0.426883 | 1.1:-46790003 | MS.gene47369:CDS |
| CCACCAGAGCTTTCTTCAGC+TGG | 0.434993 | 1.1:+46790910 | None:intergenic |
| TGTAGAGTTGTTGAGAATCA+AGG | 0.440033 | 1.1:-46790595 | MS.gene47369:CDS |
| GTCATCATCATCAACACAAT+TGG | 0.442088 | 1.1:-46790062 | MS.gene47369:CDS |
| CACCATGGCAAAGAATGAAA+TGG | 0.442437 | 1.1:-46790867 | MS.gene47369:CDS |
| GAAAGTGGAAATCTGTTTCA+AGG | 0.446222 | 1.1:-46790729 | MS.gene47369:CDS |
| TGTTGAGAATCAAGGATTGT+TGG | 0.454068 | 1.1:-46790587 | MS.gene47369:CDS |
| AAAAGCAATGGATAAGGAAC+AGG | 0.459093 | 1.1:-46789976 | MS.gene47369:CDS |
| TAGTGGGTTGTTACAGAAGA+AGG | 0.473118 | 1.1:-46790752 | MS.gene47369:CDS |
| GTCCATTTCATTCTTTGCCA+TGG | 0.478175 | 1.1:+46790865 | None:intergenic |
| TGAAAAGCAAAGGTTGAAAT+GGG | 0.482868 | 1.1:-46789900 | MS.gene47369:CDS |
| AGTGGTGTGTTTCAAGATGG+AGG | 0.493576 | 1.1:-46790016 | MS.gene47369:CDS |
| TTTCCAGCTGAAGAAAGCTC+TGG | 0.501297 | 1.1:-46790913 | MS.gene47369:CDS |
| ATTGCCCTCTAGAGTGTTGA+CGG | 0.502754 | 1.1:-46789106 | MS.gene47369:intron |
| TCAGGAGAAGGTTGTTCAAA+GGG | 0.503478 | 1.1:-46790178 | MS.gene47369:intron |
| TGTGGTCATGGTGCTGGTGG+TGG | 0.504086 | 1.1:-46790466 | MS.gene47369:CDS |
| AATAGTTGTGGTCATGGTGC+TGG | 0.506112 | 1.1:-46790472 | MS.gene47369:CDS |
| CAAGATGAAGAAGAGAATGA+TGG | 0.507615 | 1.1:-46790133 | MS.gene47369:CDS |
| TATTACATTGGTGATGAAGC+TGG | 0.519299 | 1.1:-46790808 | MS.gene47369:CDS |
| CATTTCAGCTTGAAAAGCAA+AGG | 0.520923 | 1.1:-46789910 | MS.gene47369:CDS |
| TCAAGGAAAAGAGCAAGAAA+AGG | 0.523804 | 1.1:-46790103 | MS.gene47369:CDS |
| GTGAATGATATACTTGGTAA+AGG | 0.529083 | 1.1:-46790625 | MS.gene47369:CDS |
| AATGAAATGGACTGATACAA+TGG | 0.534079 | 1.1:-46790854 | MS.gene47369:CDS |
| AACTTATCTTCACATTGTTG+AGG | 0.538324 | 1.1:+46790676 | None:intergenic |
| TGTTACAGAAGAAGGGAAAG+TGG | 0.544015 | 1.1:-46790744 | MS.gene47369:CDS |
| ATAATGGCTGTTTATTACAT+TGG | 0.545685 | 1.1:-46790820 | MS.gene47369:CDS |
| AGATGGAGGGAAGAGTCCTT+GGG | 0.547861 | 1.1:-46790002 | MS.gene47369:CDS |
| AAGGAACAGGATAATGCAGT+TGG | 0.551721 | 1.1:-46789963 | MS.gene47369:CDS |
| CAAATGAACAATGAAATAAG+TGG | 0.554110 | 1.1:-46790034 | MS.gene47369:CDS |
| GAACAGGATAATGCAGTTGG+AGG | 0.568779 | 1.1:-46789960 | MS.gene47369:CDS |
| TATCATAATAGTTGTGGTCA+TGG | 0.573317 | 1.1:-46790478 | MS.gene47369:CDS |
| GTGGTGTGTTTCAAGATGGA+GGG | 0.573587 | 1.1:-46790015 | MS.gene47369:CDS |
| CCAGCTGAAGAAAGCTCTGG+TGG | 0.575821 | 1.1:-46790910 | MS.gene47369:CDS |
| GGTGATGAAGCTGGTTCTGA+AGG | 0.576679 | 1.1:-46790799 | MS.gene47369:CDS |
| ATCAGGAGAAGGTTGTTCAA+AGG | 0.577261 | 1.1:-46790179 | MS.gene47369:intron |
| AGTTGTGGTCATGGTGCTGG+TGG | 0.583142 | 1.1:-46790469 | MS.gene47369:CDS |
| AAGAGAGTGAATGATATACT+TGG | 0.593533 | 1.1:-46790631 | MS.gene47369:CDS |
| AGGAAAAGAGCAAGAAAAGG+AGG | 0.594032 | 1.1:-46790100 | MS.gene47369:CDS |
| AAAGTGGAAATCTGTTTCAA+GGG | 0.595878 | 1.1:-46790728 | MS.gene47369:CDS |
| AGAATGATGGAAAATCATCA+AGG | 0.600165 | 1.1:-46790120 | MS.gene47369:CDS |
| AATGGACTGATACAATGGTA+AGG | 0.602489 | 1.1:-46790849 | MS.gene47369:CDS |
| AGTGGGTTGTTACAGAAGAA+GGG | 0.604261 | 1.1:-46790751 | MS.gene47369:CDS |
| AGCAAAGGTTGAAATGGGCA+AGG | 0.613121 | 1.1:-46789895 | MS.gene47369:intron |
| TAATGTTCAACACCAAGTAG+AGG | 0.621278 | 1.1:-46790440 | MS.gene47369:CDS |
| AATGTTCAACACCAAGTAGA+GGG | 0.626977 | 1.1:-46790439 | MS.gene47369:intron |
| ATAAGTGGTGTGTTTCAAGA+TGG | 0.626979 | 1.1:-46790019 | MS.gene47369:CDS |
| GTGATGAAGCTGGTTCTGAA+GGG | 0.647076 | 1.1:-46790798 | MS.gene47369:CDS |
| TGTGCTTATCATAATAGTTG+TGG | 0.648505 | 1.1:-46790484 | MS.gene47369:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACATATTTAATTTCATTA+CGG | - | chr1.1:46790825-46790844 | MS.gene47369:CDS | 10.0% |
| !! | AAAATAAAAAAAATCTGTCA+AGG | - | chr1.1:46790584-46790603 | MS.gene47369:CDS | 15.0% |
| !! | AATGAAATTAAATATGTAAC+TGG | + | chr1.1:46790824-46790843 | None:intergenic | 15.0% |
| !! | AATTTAGATTAGAACAAATT+AGG | - | chr1.1:46790352-46790371 | MS.gene47369:intron | 15.0% |
| !! | AGTTTAATGATTTGAATAAA+AGG | - | chr1.1:46789381-46789400 | MS.gene47369:intron | 15.0% |
| !!! | TACATATTTAATTTCATTAC+GGG | - | chr1.1:46790826-46790845 | MS.gene47369:CDS | 15.0% |
| ! | AAGATTAGAAAATGAGAGAA+TGG | - | chr1.1:46790222-46790241 | MS.gene47369:intron | 25.0% |
| ! | ATAATGGCTGTTTATTACAT+TGG | - | chr1.1:46789218-46789237 | MS.gene47369:intron | 25.0% |
| ! | CAAATAAGAAAAAGACTAGT+GGG | - | chr1.1:46789270-46789289 | MS.gene47369:intron | 25.0% |
| ! | CAAATGAACAATGAAATAAG+TGG | - | chr1.1:46790004-46790023 | MS.gene47369:CDS | 25.0% |
| !! | ATTCTAAGCATCTTTTCTTT+AGG | - | chr1.1:46789525-46789544 | MS.gene47369:intron | 25.0% |
| !! | CAAATTAGGTGAAATTTTTG+TGG | - | chr1.1:46790366-46790385 | MS.gene47369:intron | 25.0% |
| !! | TTCTAAGCATCTTTTCTTTA+GGG | - | chr1.1:46789526-46789545 | MS.gene47369:intron | 25.0% |
| AAAGTGGAAATCTGTTTCAA+GGG | - | chr1.1:46789310-46789329 | MS.gene47369:intron | 30.0% | |
| AACTTATCTTCACATTGTTG+AGG | + | chr1.1:46789365-46789384 | None:intergenic | 30.0% | |
| AAGAGAGTGAATGATATACT+TGG | - | chr1.1:46789407-46789426 | MS.gene47369:intron | 30.0% | |
| AATGGTAAGGCTATTGATAA+TGG | - | chr1.1:46789202-46789221 | MS.gene47369:intron | 30.0% | |
| AATGTTGAAAATTGGAAGTG+GGG | - | chr1.1:46789766-46789785 | MS.gene47369:intron | 30.0% | |
| AGAATGTTGAAAATTGGAAG+TGG | - | chr1.1:46789764-46789783 | MS.gene47369:intron | 30.0% | |
| CAATTTGGATTATCGAAACT+TGG | - | chr1.1:46790527-46790546 | MS.gene47369:CDS | 30.0% | |
| CCAAATAAGAAAAAGACTAG+TGG | - | chr1.1:46789269-46789288 | MS.gene47369:intron | 30.0% | |
| CTAACTACCAAATTTCATCT+AGG | + | chr1.1:46790332-46790351 | None:intergenic | 30.0% | |
| CTAACTTCATCTTTCATCTT+AGG | + | chr1.1:46789494-46789513 | None:intergenic | 30.0% | |
| CTAAGATGAAAGATGAAGTT+AGG | - | chr1.1:46789492-46789511 | MS.gene47369:intron | 30.0% | |
| GAATGTTGAAAATTGGAAGT+GGG | - | chr1.1:46789765-46789784 | MS.gene47369:intron | 30.0% | |
| GGTTTGAGAATGTTGAAAAT+TGG | - | chr1.1:46789758-46789777 | MS.gene47369:intron | 30.0% | |
| GTCAATTGTATAACATTGAG+TGG | - | chr1.1:46790901-46790920 | MS.gene47369:CDS | 30.0% | |
| GTGAATGATATACTTGGTAA+AGG | - | chr1.1:46789413-46789432 | MS.gene47369:intron | 30.0% | |
| GTTTCGATAATCCAAATTGA+AGG | + | chr1.1:46790526-46790545 | None:intergenic | 30.0% | |
| TAAATATGTAACTGGACTGT+GGG | + | chr1.1:46790816-46790835 | None:intergenic | 30.0% | |
| TATCATAATAGTTGTGGTCA+TGG | - | chr1.1:46789560-46789579 | MS.gene47369:intron | 30.0% | |
| TGAAAAGCAAAGGTTGAAAT+GGG | - | chr1.1:46790138-46790157 | MS.gene47369:CDS | 30.0% | |
| TGTGCTTATCATAATAGTTG+TGG | - | chr1.1:46789554-46789573 | MS.gene47369:intron | 30.0% | |
| TTAAATATGTAACTGGACTG+TGG | + | chr1.1:46790817-46790836 | None:intergenic | 30.0% | |
| TTAATCTTCCTCCTTCAATT+TGG | - | chr1.1:46790512-46790531 | MS.gene47369:CDS | 30.0% | |
| TTGAAAAGCAAAGGTTGAAA+TGG | - | chr1.1:46790137-46790156 | MS.gene47369:CDS | 30.0% | |
| ! | AAAAAAAATGAAAGCACACC+CGG | - | chr1.1:46790632-46790651 | MS.gene47369:CDS | 30.0% |
| ! | AAGGAGGATTTTCATTTTCA+AGG | - | chr1.1:46789954-46789973 | MS.gene47369:CDS | 30.0% |
| ! | AGAATGATGGAAAATCATCA+AGG | - | chr1.1:46789918-46789937 | MS.gene47369:CDS | 30.0% |
| ! | TCAAAGAGTGTGTATCTAAA+TGG | + | chr1.1:46790481-46790500 | None:intergenic | 30.0% |
| ! | TGTTTTCATTCATCAGAGAA+TGG | - | chr1.1:46789704-46789723 | MS.gene47369:intron | 30.0% |
| !! | AATGAAATGGACTGATACAA+TGG | - | chr1.1:46789184-46789203 | MS.gene47369:intron | 30.0% |
| !! | AGAGAATGGTTTTGCTTATT+AGG | - | chr1.1:46790236-46790255 | MS.gene47369:intron | 30.0% |
| !! | TTGACTTGCTCATAATGAAA+AGG | + | chr1.1:46790886-46790905 | None:intergenic | 30.0% |
| !!! | CCACTAGTCTTTTTCTTATT+TGG | + | chr1.1:46789272-46789291 | None:intergenic | 30.0% |
| AAAAGCAATGGATAAGGAAC+AGG | - | chr1.1:46790062-46790081 | MS.gene47369:CDS | 35.0% | |
| AAATATGTAACTGGACTGTG+GGG | + | chr1.1:46790815-46790834 | None:intergenic | 35.0% | |
| AATGTTCAACACCAAGTAGA+GGG | - | chr1.1:46789599-46789618 | MS.gene47369:intron | 35.0% | |
| ACACACTCTTTGATTCAGTT+TGG | - | chr1.1:46790488-46790507 | MS.gene47369:CDS | 35.0% | |
| ACTACCAAATTTCATCTAGG+TGG | + | chr1.1:46790329-46790348 | None:intergenic | 35.0% | |
| ACTTCTAATCAAGCGATTGT+GGG | + | chr1.1:46790695-46790714 | None:intergenic | 35.0% | |
| ATAAGTGGTGTGTTTCAAGA+TGG | - | chr1.1:46790019-46790038 | MS.gene47369:CDS | 35.0% | |
| ATTCATCAGAGAATGGTGTA+GGG | - | chr1.1:46789711-46789730 | MS.gene47369:intron | 35.0% | |
| CAAAAAGGAAGATTTCACCA+TGG | - | chr1.1:46789156-46789175 | MS.gene47369:intron | 35.0% | |
| CAAGATGAAGAAGAGAATGA+TGG | - | chr1.1:46789905-46789924 | MS.gene47369:CDS | 35.0% | |
| CATTTCAGCTTGAAAAGCAA+AGG | - | chr1.1:46790128-46790147 | MS.gene47369:CDS | 35.0% | |
| CTTTCTTCAGCTGGAAAATT+TGG | + | chr1.1:46789122-46789141 | None:intergenic | 35.0% | |
| GAAAGTGGAAATCTGTTTCA+AGG | - | chr1.1:46789309-46789328 | MS.gene47369:intron | 35.0% | |
| GAGCTAAACTTGAGAATGAA+AGG | - | chr1.1:46790197-46790216 | MS.gene47369:intron | 35.0% | |
| GTATAGTAGCAAGAAAGAGA+GGG | - | chr1.1:46790165-46790184 | MS.gene47369:CDS | 35.0% | |
| GTCATCATCATCAACACAAT+TGG | - | chr1.1:46789976-46789995 | MS.gene47369:CDS | 35.0% | |
| TAATGTTCAACACCAAGTAG+AGG | - | chr1.1:46789598-46789617 | MS.gene47369:intron | 35.0% | |
| TCAAGGAAAAGAGCAAGAAA+AGG | - | chr1.1:46789935-46789954 | MS.gene47369:CDS | 35.0% | |
| TCAAGGATTGTTGGATTCAA+TGG | - | chr1.1:46789460-46789479 | MS.gene47369:intron | 35.0% | |
| TCGATAATCCAAATTGAAGG+AGG | + | chr1.1:46790523-46790542 | None:intergenic | 35.0% | |
| TCTTCCACCTAGATGAAATT+TGG | - | chr1.1:46790322-46790341 | MS.gene47369:intron | 35.0% | |
| TGTAGAGTTGTTGAGAATCA+AGG | - | chr1.1:46789443-46789462 | MS.gene47369:intron | 35.0% | |
| TGTTGAGAATCAAGGATTGT+TGG | - | chr1.1:46789451-46789470 | MS.gene47369:intron | 35.0% | |
| ! | CATGGTGAAATCTTCCTTTT+TGG | + | chr1.1:46789158-46789177 | None:intergenic | 35.0% |
| ! | GATTTTTCTGATGAGGATGA+AGG | - | chr1.1:46789833-46789852 | MS.gene47369:intron | 35.0% |
| ! | GGTTTTGCTTATTAGGAAGA+AGG | - | chr1.1:46790243-46790262 | MS.gene47369:intron | 35.0% |
| ! | TTGTGGCTGTTCAATTTTTG+AGG | - | chr1.1:46790383-46790402 | MS.gene47369:intron | 35.0% |
| !! | AATGGACTGATACAATGGTA+AGG | - | chr1.1:46789189-46789208 | MS.gene47369:intron | 35.0% |
| !! | TATTACATTGGTGATGAAGC+TGG | - | chr1.1:46789230-46789249 | MS.gene47369:intron | 35.0% |
| AAGGAACAGGATAATGCAGT+TGG | - | chr1.1:46790075-46790094 | MS.gene47369:CDS | 40.0% | |
| AGATGAGGATGATGAAGATG+AGG | - | chr1.1:46789796-46789815 | MS.gene47369:intron | 40.0% | |
| AGGAAAAGAGCAAGAAAAGG+AGG | - | chr1.1:46789938-46789957 | MS.gene47369:CDS | 40.0% | |
| AGTCAAACGCCTTATCCATT+AGG | - | chr1.1:46790712-46790731 | MS.gene47369:CDS | 40.0% | |
| ATCAGGAGAAGGTTGTTCAA+AGG | - | chr1.1:46789859-46789878 | MS.gene47369:intron | 40.0% | |
| ATCTGTTTCAAGGGCTATGA+TGG | - | chr1.1:46789319-46789338 | MS.gene47369:intron | 40.0% | |
| CACCATGGCAAAGAATGAAA+TGG | - | chr1.1:46789171-46789190 | MS.gene47369:intron | 40.0% | |
| CAGTTGGAGGAACAGAAAAT+AGG | - | chr1.1:46790091-46790110 | MS.gene47369:CDS | 40.0% | |
| CATTCATCAGAGAATGGTGT+AGG | - | chr1.1:46789710-46789729 | MS.gene47369:intron | 40.0% | |
| GACTTCTAATCAAGCGATTG+TGG | + | chr1.1:46790696-46790715 | None:intergenic | 40.0% | |
| GGGAGAAAAAGCAATGGATA+AGG | - | chr1.1:46790056-46790075 | MS.gene47369:CDS | 40.0% | |
| GGTATAGTAGCAAGAAAGAG+AGG | - | chr1.1:46790164-46790183 | MS.gene47369:CDS | 40.0% | |
| GGTTGTTCAAAGGGTCAAAT+TGG | - | chr1.1:46789869-46789888 | MS.gene47369:intron | 40.0% | |
| GTCCATTTCATTCTTTGCCA+TGG | + | chr1.1:46789176-46789195 | None:intergenic | 40.0% | |
| TAGCAAGAAAGAGAGGGAAA+TGG | - | chr1.1:46790171-46790190 | MS.gene47369:CDS | 40.0% | |
| TCAGGAGAAGGTTGTTCAAA+GGG | - | chr1.1:46789860-46789879 | MS.gene47369:intron | 40.0% | |
| TGTTACAGAAGAAGGGAAAG+TGG | - | chr1.1:46789294-46789313 | MS.gene47369:intron | 40.0% | |
| ! | CAAGGGCTATGATGGAAAAA+GGG | - | chr1.1:46789327-46789346 | MS.gene47369:intron | 40.0% |
| ! | GTCAGAGGATTTTTCTGATG+AGG | - | chr1.1:46789826-46789845 | MS.gene47369:intron | 40.0% |
| ! | TCAAGGGCTATGATGGAAAA+AGG | - | chr1.1:46789326-46789345 | MS.gene47369:intron | 40.0% |
| !! | AGTGGGTTGTTACAGAAGAA+GGG | - | chr1.1:46789287-46789306 | MS.gene47369:intron | 40.0% |
| !! | TAGTGGGTTGTTACAGAAGA+AGG | - | chr1.1:46789286-46789305 | MS.gene47369:intron | 40.0% |
| !!! | ATCCATTGCTTTTTCTCCCA+AGG | + | chr1.1:46790055-46790074 | None:intergenic | 40.0% |
| AAGTGGGGATGTTGAAGATG+AGG | - | chr1.1:46789781-46789800 | MS.gene47369:intron | 45.0% | |
| AATAGTTGTGGTCATGGTGC+TGG | - | chr1.1:46789566-46789585 | MS.gene47369:intron | 45.0% | |
| AGCAAAGGTTGAAATGGGCA+AGG | - | chr1.1:46790143-46790162 | MS.gene47369:CDS | 45.0% | |
| AGTGGTGTGTTTCAAGATGG+AGG | - | chr1.1:46790022-46790041 | MS.gene47369:CDS | 45.0% | |
| GAACAGGATAATGCAGTTGG+AGG | - | chr1.1:46790078-46790097 | MS.gene47369:CDS | 45.0% | |
| GATGAAGGTGAATCAGGAGA+AGG | - | chr1.1:46789848-46789867 | MS.gene47369:intron | 45.0% | |
| GATGAGGATGAAGGTGAATC+AGG | - | chr1.1:46789842-46789861 | MS.gene47369:intron | 45.0% | |
| GTCCTTGGGAGAAAAAGCAA+TGG | - | chr1.1:46790050-46790069 | MS.gene47369:CDS | 45.0% | |
| GTGGTGTGTTTCAAGATGGA+GGG | - | chr1.1:46790023-46790042 | MS.gene47369:CDS | 45.0% | |
| TGAGGATGATGAAGATGAGG+AGG | - | chr1.1:46789799-46789818 | MS.gene47369:intron | 45.0% | |
| TGTTGTTGATGCTGCTGTTG+AGG | + | chr1.1:46789656-46789675 | None:intergenic | 45.0% | |
| TTTCCAGCTGAAGAAAGCTC+TGG | - | chr1.1:46789125-46789144 | MS.gene47369:intron | 45.0% | |
| ! | AAAAATGAAAGCACACCCGG+TGG | - | chr1.1:46790635-46790654 | MS.gene47369:CDS | 45.0% |
| ! | AAAATGAAAGCACACCCGGT+GGG | - | chr1.1:46790636-46790655 | MS.gene47369:CDS | 45.0% |
| ! | GAGAATGGTGTAGGGAGTTT+TGG | - | chr1.1:46789719-46789738 | MS.gene47369:intron | 45.0% |
| ! | TGCTGTTGAGGTTGATTCTG+AGG | + | chr1.1:46789644-46789663 | None:intergenic | 45.0% |
| ! | TGTTGAGGTTGATTCTGAGG+TGG | + | chr1.1:46789641-46789660 | None:intergenic | 45.0% |
| ! | TTTGGTGGTTCAAGAGGAGA+GGG | - | chr1.1:46789737-46789756 | MS.gene47369:intron | 45.0% |
| !! | AATGGTGTAGGGAGTTTTGG+TGG | - | chr1.1:46789722-46789741 | MS.gene47369:intron | 45.0% |
| !! | ATTGCCCTCTAGAGTGTTGA+CGG | - | chr1.1:46790932-46790951 | MS.gene47369:CDS | 45.0% |
| !! | GTGATGAAGCTGGTTCTGAA+GGG | - | chr1.1:46789240-46789259 | MS.gene47369:intron | 45.0% |
| !! | TTTTGGTGGTTCAAGAGGAG+AGG | - | chr1.1:46789736-46789755 | MS.gene47369:intron | 45.0% |
| AAGATGGAGGGAAGAGTCCT+TGG | - | chr1.1:46790035-46790054 | MS.gene47369:CDS | 50.0% | |
| ACGCCTTATCCATTAGGCCA+CGG | - | chr1.1:46790718-46790737 | MS.gene47369:CDS | 50.0% | |
| AGATGAGGAGGATGAGTCAG+AGG | - | chr1.1:46789811-46789830 | MS.gene47369:intron | 50.0% | |
| AGATGGAGGGAAGAGTCCTT+GGG | - | chr1.1:46790036-46790055 | MS.gene47369:CDS | 50.0% | |
| CATGCCGTCAACACTCTAGA+GGG | + | chr1.1:46790939-46790958 | None:intergenic | 50.0% | |
| GTTCAACACCAAGTAGAGGG+TGG | - | chr1.1:46789602-46789621 | MS.gene47369:intron | 50.0% | |
| TCATGCCGTCAACACTCTAG+AGG | + | chr1.1:46790940-46790959 | None:intergenic | 50.0% | |
| TGCTTTCATTCGAGTCCCAC+CGG | + | chr1.1:46790654-46790673 | None:intergenic | 50.0% | |
| TTCCACTTCCACCCTCTACT+TGG | + | chr1.1:46789613-46789632 | None:intergenic | 50.0% | |
| ! | GACTCGAATGAAAGCACACC+CGG | - | chr1.1:46790658-46790677 | MS.gene47369:CDS | 50.0% |
| ! | GCTCTGGTGGTGATCCAAAA+AGG | - | chr1.1:46789141-46789160 | MS.gene47369:intron | 50.0% |
| !! | CAACAAACAAGAAGCACCCG+TGG | + | chr1.1:46790738-46790757 | None:intergenic | 50.0% |
| !! | GGGAGTTTTGGTGGTTCAAG+AGG | - | chr1.1:46789731-46789750 | MS.gene47369:intron | 50.0% |
| !! | GGTGATGAAGCTGGTTCTGA+AGG | - | chr1.1:46789239-46789258 | MS.gene47369:intron | 50.0% |
| ATTGTGGGTTCGAGTCCCAC+CGG | + | chr1.1:46790680-46790699 | None:intergenic | 55.0% | |
| CACCAAGTAGAGGGTGGAAG+TGG | - | chr1.1:46789608-46789627 | MS.gene47369:intron | 55.0% | |
| CCACCAGAGCTTTCTTCAGC+TGG | + | chr1.1:46789131-46789150 | None:intergenic | 55.0% | |
| CGCCTTATCCATTAGGCCAC+GGG | - | chr1.1:46790719-46790738 | MS.gene47369:CDS | 55.0% | |
| GCTTTCATTCGAGTCCCACC+GGG | + | chr1.1:46790653-46790672 | None:intergenic | 55.0% | |
| GTAACTGGACTGTGGGGTGA+AGG | + | chr1.1:46790809-46790828 | None:intergenic | 55.0% | |
| GTTGTTGCTGATGCTGCTGC+TGG | + | chr1.1:46789682-46789701 | None:intergenic | 55.0% | |
| ! | AGTTGTGGTCATGGTGCTGG+TGG | - | chr1.1:46789569-46789588 | MS.gene47369:intron | 55.0% |
| ! | CACCCGTGGCCTAATGGATA+AGG | + | chr1.1:46790724-46790743 | None:intergenic | 55.0% |
| ! | CCAGCTGAAGAAAGCTCTGG+TGG | - | chr1.1:46789128-46789147 | MS.gene47369:intron | 55.0% |
| ! | CGAATGAAAGCACACCCGGT+GGG | - | chr1.1:46790662-46790681 | MS.gene47369:CDS | 55.0% |
| ! | TCGAATGAAAGCACACCCGG+TGG | - | chr1.1:46790661-46790680 | MS.gene47369:CDS | 55.0% |
| !! | AAGAAGCACCCGTGGCCTAA+TGG | + | chr1.1:46790730-46790749 | None:intergenic | 55.0% |
| TTGTGGGTTCGAGTCCCACC+GGG | + | chr1.1:46790679-46790698 | None:intergenic | 60.0% | |
| !! | TGTGGTCATGGTGCTGGTGG+TGG | - | chr1.1:46789572-46789591 | MS.gene47369:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 46789101 | 46790959 | 46789101 | ID=MS.gene47369 |
| chr1.1 | mRNA | 46789101 | 46790959 | 46789101 | ID=MS.gene47369.t1;Parent=MS.gene47369 |
| chr1.1 | exon | 46790440 | 46790959 | 46790440 | ID=MS.gene47369.t1.exon1;Parent=MS.gene47369.t1 |
| chr1.1 | CDS | 46790440 | 46790959 | 46790440 | ID=cds.MS.gene47369.t1;Parent=MS.gene47369.t1 |
| chr1.1 | exon | 46789896 | 46790196 | 46789896 | ID=MS.gene47369.t1.exon2;Parent=MS.gene47369.t1 |
| chr1.1 | CDS | 46789896 | 46790196 | 46789896 | ID=cds.MS.gene47369.t1;Parent=MS.gene47369.t1 |
| chr1.1 | exon | 46789101 | 46789116 | 46789101 | ID=MS.gene47369.t1.exon3;Parent=MS.gene47369.t1 |
| chr1.1 | CDS | 46789101 | 46789116 | 46789101 | ID=cds.MS.gene47369.t1;Parent=MS.gene47369.t1 |
| Gene Sequence |
| Protein sequence |
