Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47370.t1 | XP_003590399.1 | 97.4 | 233 | 5 | 1 | 1 | 233 | 1 | 232 | 2.20E-124 | 454.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47370.t1 | Q9LZR0 | 49.7 | 195 | 80 | 5 | 1 | 178 | 1 | 194 | 1.8e-34 | 147.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47370.t1 | G7I9C4 | 97.4 | 233 | 5 | 1 | 1 | 233 | 1 | 232 | 1.6e-124 | 454.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene47370.t1 | TF | HB-HD-ZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47370.t1 | MTR_1g061660 | 97.425 | 233 | 5 | 1 | 1 | 233 | 1 | 232 | 1.10e-171 | 471 |
| MS.gene47370.t1 | MTR_7g103340 | 56.735 | 245 | 81 | 11 | 1 | 233 | 1 | 232 | 1.08e-77 | 234 |
| MS.gene47370.t1 | MTR_6g007647 | 56.863 | 102 | 37 | 1 | 59 | 153 | 32 | 133 | 2.64e-30 | 113 |
| MS.gene47370.t1 | MTR_6g007647 | 56.863 | 102 | 37 | 1 | 59 | 153 | 66 | 167 | 4.10e-30 | 113 |
| MS.gene47370.t1 | MTR_4g107650 | 50.420 | 119 | 52 | 1 | 49 | 160 | 84 | 202 | 1.88e-29 | 112 |
| MS.gene47370.t1 | MTR_6g011610 | 55.670 | 97 | 43 | 0 | 54 | 150 | 90 | 186 | 4.04e-28 | 108 |
| MS.gene47370.t1 | MTR_6g011610 | 55.670 | 97 | 43 | 0 | 54 | 150 | 71 | 167 | 4.39e-28 | 107 |
| MS.gene47370.t1 | MTR_8g468210 | 55.670 | 97 | 36 | 1 | 57 | 146 | 74 | 170 | 8.92e-28 | 107 |
| MS.gene47370.t1 | MTR_3g086790 | 38.764 | 178 | 87 | 5 | 55 | 221 | 55 | 221 | 1.10e-27 | 107 |
| MS.gene47370.t1 | MTR_8g089895 | 40.645 | 155 | 79 | 4 | 48 | 189 | 39 | 193 | 2.22e-26 | 104 |
| MS.gene47370.t1 | MTR_5g038280 | 54.128 | 109 | 39 | 2 | 58 | 155 | 85 | 193 | 2.98e-26 | 103 |
| MS.gene47370.t1 | MTR_5g039000 | 56.180 | 89 | 39 | 0 | 59 | 147 | 76 | 164 | 3.72e-26 | 102 |
| MS.gene47370.t1 | MTR_3g080100 | 41.722 | 151 | 79 | 3 | 59 | 207 | 19 | 162 | 2.45e-25 | 99.4 |
| MS.gene47370.t1 | MTR_3g092150 | 49.038 | 104 | 45 | 2 | 62 | 158 | 40 | 142 | 3.35e-25 | 99.8 |
| MS.gene47370.t1 | MTR_8g469430 | 53.608 | 97 | 38 | 1 | 60 | 149 | 89 | 185 | 3.50e-25 | 100 |
| MS.gene47370.t1 | MTR_3g080100 | 41.722 | 151 | 79 | 3 | 59 | 207 | 58 | 201 | 5.26e-25 | 99.4 |
| MS.gene47370.t1 | MTR_7g010020 | 54.639 | 97 | 37 | 1 | 58 | 147 | 78 | 174 | 3.07e-24 | 97.8 |
| MS.gene47370.t1 | MTR_8g026960 | 42.308 | 130 | 56 | 3 | 64 | 183 | 38 | 158 | 5.56e-24 | 96.3 |
| MS.gene47370.t1 | MTR_5g019680 | 44.340 | 106 | 59 | 0 | 55 | 160 | 48 | 153 | 1.06e-20 | 86.7 |
| MS.gene47370.t1 | MTR_4g097600 | 48.315 | 89 | 46 | 0 | 60 | 148 | 127 | 215 | 2.23e-18 | 82.0 |
| MS.gene47370.t1 | MTR_7g093430 | 45.161 | 93 | 51 | 0 | 60 | 152 | 160 | 252 | 2.80e-18 | 82.0 |
| MS.gene47370.t1 | MTR_5g019650 | 42.478 | 113 | 58 | 1 | 55 | 160 | 48 | 160 | 3.07e-18 | 80.5 |
| MS.gene47370.t1 | MTR_4g100550 | 38.971 | 136 | 66 | 3 | 60 | 187 | 120 | 246 | 3.75e-18 | 81.3 |
| MS.gene47370.t1 | MTR_1g017090 | 43.119 | 109 | 55 | 2 | 47 | 148 | 110 | 218 | 1.47e-17 | 79.7 |
| MS.gene47370.t1 | MTR_1g054285 | 44.944 | 89 | 49 | 0 | 60 | 148 | 154 | 242 | 2.29e-17 | 79.3 |
| MS.gene47370.t1 | MTR_5g013010 | 47.191 | 89 | 47 | 0 | 60 | 148 | 136 | 224 | 8.18e-17 | 77.8 |
| MS.gene47370.t1 | MTR_8g006705 | 46.067 | 89 | 48 | 0 | 60 | 148 | 146 | 234 | 1.04e-16 | 77.8 |
| MS.gene47370.t1 | MTR_2g061030 | 43.820 | 89 | 50 | 0 | 60 | 148 | 200 | 288 | 1.42e-16 | 77.8 |
| MS.gene47370.t1 | MTR_4g084750 | 44.681 | 94 | 52 | 0 | 55 | 148 | 60 | 153 | 2.27e-16 | 75.1 |
| MS.gene47370.t1 | MTR_5g014890 | 43.820 | 89 | 50 | 0 | 60 | 148 | 123 | 211 | 2.65e-15 | 73.6 |
| MS.gene47370.t1 | MTR_4g126900 | 44.186 | 86 | 48 | 0 | 63 | 148 | 91 | 176 | 3.49e-15 | 72.4 |
| MS.gene47370.t1 | MTR_3g103590 | 43.820 | 89 | 50 | 0 | 60 | 148 | 145 | 233 | 1.52e-14 | 71.6 |
| MS.gene47370.t1 | MTR_2g038625 | 42.697 | 89 | 51 | 0 | 60 | 148 | 82 | 170 | 4.36e-13 | 66.2 |
| MS.gene47370.t1 | MTR_2g038580 | 42.697 | 89 | 51 | 0 | 60 | 148 | 82 | 170 | 4.36e-13 | 66.2 |
| MS.gene47370.t1 | MTR_5g013010 | 55.769 | 52 | 23 | 0 | 60 | 111 | 136 | 187 | 1.64e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47370.t1 | AT5G03790 | 50.769 | 195 | 78 | 6 | 1 | 178 | 1 | 194 | 4.19e-49 | 161 |
| MS.gene47370.t1 | AT5G03790 | 53.704 | 162 | 58 | 5 | 1 | 145 | 1 | 162 | 1.19e-42 | 143 |
| MS.gene47370.t1 | AT2G36610 | 49.162 | 179 | 65 | 7 | 7 | 162 | 5 | 180 | 1.89e-41 | 140 |
| MS.gene47370.t1 | AT4G40060 | 41.875 | 160 | 82 | 3 | 27 | 177 | 28 | 185 | 1.11e-31 | 117 |
| MS.gene47370.t1 | AT1G69780 | 44.755 | 143 | 66 | 1 | 57 | 199 | 82 | 211 | 1.27e-30 | 115 |
| MS.gene47370.t1 | AT5G15150 | 62.366 | 93 | 35 | 0 | 57 | 149 | 112 | 204 | 1.02e-29 | 113 |
| MS.gene47370.t1 | AT2G22430 | 54.455 | 101 | 39 | 1 | 56 | 149 | 58 | 158 | 9.86e-29 | 110 |
| MS.gene47370.t1 | AT5G65310 | 41.667 | 144 | 72 | 4 | 12 | 151 | 28 | 163 | 7.35e-28 | 108 |
| MS.gene47370.t1 | AT5G65310 | 41.667 | 144 | 72 | 4 | 12 | 151 | 10 | 145 | 7.89e-28 | 107 |
| MS.gene47370.t1 | AT3G01470 | 36.471 | 170 | 98 | 2 | 57 | 219 | 65 | 231 | 1.83e-27 | 106 |
| MS.gene47370.t1 | AT3G01220 | 53.211 | 109 | 44 | 1 | 57 | 158 | 84 | 192 | 1.83e-27 | 106 |
| MS.gene47370.t1 | AT2G46680 | 49.541 | 109 | 48 | 1 | 45 | 146 | 17 | 125 | 4.56e-27 | 104 |
| MS.gene47370.t1 | AT3G61890 | 39.264 | 163 | 70 | 3 | 63 | 214 | 33 | 177 | 6.34e-27 | 103 |
| MS.gene47370.t1 | AT2G46680 | 47.826 | 115 | 53 | 1 | 45 | 152 | 17 | 131 | 3.29e-26 | 102 |
| MS.gene47370.t1 | AT1G26960 | 42.958 | 142 | 60 | 3 | 57 | 193 | 68 | 193 | 4.29e-25 | 99.8 |
| MS.gene47370.t1 | AT2G18550 | 40.476 | 126 | 71 | 1 | 55 | 176 | 56 | 181 | 1.34e-24 | 97.4 |
| MS.gene47370.t1 | AT4G36740 | 50.526 | 95 | 47 | 0 | 55 | 149 | 51 | 145 | 3.19e-24 | 96.3 |
| MS.gene47370.t1 | AT4G36740 | 50.526 | 95 | 47 | 0 | 55 | 149 | 50 | 144 | 3.39e-24 | 96.3 |
| MS.gene47370.t1 | AT1G27045 | 49.020 | 102 | 45 | 1 | 60 | 154 | 25 | 126 | 1.74e-22 | 90.9 |
| MS.gene47370.t1 | AT1G27045 | 49.020 | 102 | 45 | 1 | 60 | 154 | 25 | 126 | 1.74e-22 | 90.9 |
| MS.gene47370.t1 | AT1G27045 | 49.020 | 102 | 45 | 1 | 60 | 154 | 68 | 169 | 1.85e-22 | 92.0 |
| MS.gene47370.t1 | AT1G27045 | 49.020 | 102 | 45 | 1 | 60 | 154 | 17 | 118 | 1.95e-22 | 90.5 |
| MS.gene47370.t1 | AT5G66700 | 48.913 | 92 | 47 | 0 | 60 | 151 | 71 | 162 | 1.13e-21 | 90.1 |
| MS.gene47370.t1 | AT1G27045 | 43.636 | 110 | 58 | 1 | 60 | 169 | 68 | 173 | 8.03e-21 | 88.2 |
| MS.gene47370.t1 | AT5G53980 | 44.211 | 95 | 53 | 0 | 60 | 154 | 11 | 105 | 2.87e-17 | 76.6 |
| MS.gene47370.t1 | AT4G16780 | 43.617 | 94 | 53 | 0 | 55 | 148 | 124 | 217 | 4.43e-17 | 78.6 |
| MS.gene47370.t1 | AT5G06710 | 44.944 | 89 | 49 | 0 | 60 | 148 | 190 | 278 | 1.24e-16 | 77.8 |
| MS.gene47370.t1 | AT2G01430 | 48.315 | 89 | 46 | 0 | 60 | 148 | 139 | 227 | 2.22e-16 | 76.6 |
| MS.gene47370.t1 | AT3G60390 | 46.067 | 89 | 48 | 0 | 60 | 148 | 162 | 250 | 2.89e-16 | 76.6 |
| MS.gene47370.t1 | AT4G17460 | 41.489 | 94 | 55 | 0 | 55 | 148 | 130 | 223 | 2.94e-16 | 76.3 |
| MS.gene47370.t1 | AT2G22800 | 42.553 | 94 | 54 | 0 | 55 | 148 | 108 | 201 | 8.15e-16 | 75.1 |
| MS.gene47370.t1 | AT4G37790 | 42.553 | 94 | 54 | 0 | 55 | 148 | 121 | 214 | 1.37e-15 | 74.3 |
| MS.gene47370.t1 | AT5G47370 | 31.973 | 147 | 91 | 2 | 11 | 148 | 72 | 218 | 1.40e-15 | 74.3 |
| MS.gene47370.t1 | AT2G44910 | 42.697 | 89 | 51 | 0 | 60 | 148 | 163 | 251 | 4.00e-15 | 73.6 |
| MS.gene47370.t1 | AT1G70920 | 41.489 | 94 | 55 | 0 | 55 | 148 | 34 | 127 | 1.94e-12 | 63.9 |
| MS.gene47370.t1 | AT1G70920 | 41.489 | 94 | 55 | 0 | 55 | 148 | 64 | 157 | 2.20e-12 | 64.3 |
| MS.gene47370.t1 | AT5G06710 | 53.846 | 52 | 24 | 0 | 60 | 111 | 190 | 241 | 1.00e-11 | 63.5 |
| MS.gene47370.t1 | AT2G01430 | 56.604 | 53 | 23 | 0 | 60 | 112 | 139 | 191 | 2.08e-11 | 61.6 |
Find 47 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCTCGTCAAATTGCTATT+TGG | 0.235729 | 1.4:+50835634 | MS.gene47370:CDS |
| CCAATTTGAGGTTGTGTCTA+AGG | 0.239704 | 1.4:+50835722 | MS.gene47370:CDS |
| TCCACCTAGCACGTCTGTTT+TGG | 0.279067 | 1.4:-50835659 | None:intergenic |
| AAACTGTTGTTTCAATTTAG+AGG | 0.288321 | 1.4:+50837406 | MS.gene47370:CDS |
| CCTTAGACACAACCTCAAAT+TGG | 0.299647 | 1.4:-50835722 | None:intergenic |
| ATGAAGCTTTCCAAGGAGTT+AGG | 0.302805 | 1.4:+50835606 | MS.gene47370:CDS |
| CTTTCCCTTCACCTCTCTGT+TGG | 0.348637 | 1.4:-50837354 | None:intergenic |
| GAAAGCTTCATCTTCCTTTG+AGG | 0.362313 | 1.4:-50835594 | None:intergenic |
| AATTAAGGGTGATAGTTATA+AGG | 0.365223 | 1.4:-50837482 | None:intergenic |
| AGATACAATGTTCCCAGAAA+TGG | 0.367312 | 1.4:+50835467 | MS.gene47370:CDS |
| AAAGCTTCATCTTCCTTTGA+GGG | 0.383872 | 1.4:-50835593 | None:intergenic |
| GCAGGCCAGTAGGGCAATAG+TGG | 0.385106 | 1.4:-50837452 | None:intergenic |
| GTAGTTGTAGAGGAAGCTTA+AGG | 0.434188 | 1.4:-50835044 | None:intergenic |
| GTGTTCCACTATTGCCCTAC+TGG | 0.465761 | 1.4:+50837447 | MS.gene47370:CDS |
| TGAAGCTTTCCAAGGAGTTA+GGG | 0.476348 | 1.4:+50835607 | MS.gene47370:CDS |
| TTCACTTAGACACCAATTTG+AGG | 0.493024 | 1.4:+50835710 | MS.gene47370:CDS |
| ATACAAGTGTTCAAGTTGCT+TGG | 0.493063 | 1.4:-50835685 | None:intergenic |
| GGTACAGAAGCAGGCCAGTA+GGG | 0.495028 | 1.4:-50837461 | None:intergenic |
| AGGCTGTAGCCCTAACTCCT+TGG | 0.496406 | 1.4:-50835616 | None:intergenic |
| TGTTCAGGTTGTGAAGTTGA+AGG | 0.499837 | 1.4:+50837217 | MS.gene47370:intron |
| AAGTGAACAGATGGAATCAC+TGG | 0.512806 | 1.4:+50835539 | MS.gene47370:CDS |
| GTGTGTTTGTTAAGGAATGA+TGG | 0.514828 | 1.4:+50835422 | MS.gene47370:intron |
| TACAACCAATGCTCATATCA+AGG | 0.516637 | 1.4:+50835064 | MS.gene47370:CDS |
| TAGTTATAAGGTACAGAAGC+AGG | 0.517499 | 1.4:-50837470 | None:intergenic |
| CAACAGTTGAACATTGATGA+AGG | 0.518077 | 1.4:+50837383 | MS.gene47370:CDS |
| AAAACAGCAGCTTCAGGATG+AGG | 0.518698 | 1.4:+50835746 | MS.gene47370:CDS |
| AGCATTGGTTGTAGTTGTAG+AGG | 0.525273 | 1.4:-50835054 | None:intergenic |
| TAGATAATTATGGAATGGAA+TGG | 0.526946 | 1.4:+50834986 | None:intergenic |
| AACTCTTGTGGTAGAATGCA+AGG | 0.527714 | 1.4:+50837260 | MS.gene47370:CDS |
| GCGATTAACAAGTGAACAGA+TGG | 0.532633 | 1.4:+50835530 | MS.gene47370:CDS |
| AGGTACAGAAGCAGGCCAGT+AGG | 0.540474 | 1.4:-50837462 | None:intergenic |
| ACAGATAGATAATTATGGAA+TGG | 0.549629 | 1.4:+50834981 | None:intergenic |
| TGGAAGTGAAACAACAAGAC+TGG | 0.554952 | 1.4:+50835442 | MS.gene47370:CDS |
| CTTAAGGAAGACTCTGGTTG+AGG | 0.556116 | 1.4:-50835028 | None:intergenic |
| TTGCTCCAACAGAGAGGTGA+AGG | 0.556685 | 1.4:+50837349 | MS.gene47370:CDS |
| AGATCAAACTAGACCCTCAA+AGG | 0.558248 | 1.4:+50835580 | MS.gene47370:CDS |
| GGTTCCAAAACAGACGTGCT+AGG | 0.562576 | 1.4:+50835655 | MS.gene47370:CDS |
| AACAGTAGAAAGCACATCAG+AGG | 0.578567 | 1.4:+50837316 | MS.gene47370:CDS |
| AAAGAACAAGGTAACTCTTG+TGG | 0.599344 | 1.4:+50837248 | MS.gene47370:CDS |
| AGGAAGCTTAAGGAAGACTC+TGG | 0.609695 | 1.4:-50835034 | None:intergenic |
| AAGGAAGATGAAGCTTTCCA+AGG | 0.615641 | 1.4:+50835599 | MS.gene47370:CDS |
| AAGGCTATGTTGAAAGAACA+AGG | 0.632753 | 1.4:+50837236 | MS.gene47370:CDS |
| TTACTATACAGAAATGTCAG+TGG | 0.650416 | 1.4:+50837283 | MS.gene47370:CDS |
| TGCTCCAACAGAGAGGTGAA+GGG | 0.655501 | 1.4:+50837350 | MS.gene47370:CDS |
| TCCAAAACAGACGTGCTAGG+TGG | 0.669622 | 1.4:+50835658 | MS.gene47370:CDS |
| AACCAAATAGCAATTTGACG+AGG | 0.698239 | 1.4:-50835636 | None:intergenic |
| TCTACGTTGCTCCAACAGAG+AGG | 0.709736 | 1.4:+50837343 | MS.gene47370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGAAAAATAAATTATTTA+AGG | + | chr1.4:50836345-50836364 | MS.gene47370:intron | 10.0% |
| !! | ATTTAGTGTTATATTATATT+GGG | + | chr1.4:50836204-50836223 | MS.gene47370:intron | 10.0% |
| !! | TACGTAAAAAAAATTTAAAA+TGG | + | chr1.4:50836429-50836448 | MS.gene47370:intron | 10.0% |
| !! | TATTTAGTGTTATATTATAT+TGG | + | chr1.4:50836203-50836222 | MS.gene47370:intron | 10.0% |
| !!! | AAAATATTGTTTTAAAGTTT+AGG | - | chr1.4:50835402-50835421 | None:intergenic | 10.0% |
| !!! | TGTTATTTTAAATAATCAAA+TGG | + | chr1.4:50835982-50836001 | MS.gene47370:intron | 10.0% |
| !!! | TTTTCTCTTATTTATATTAT+TGG | + | chr1.4:50836883-50836902 | MS.gene47370:intron | 10.0% |
| !! | AAAAAAAAACTATAGATACA+TGG | - | chr1.4:50835233-50835252 | None:intergenic | 15.0% |
| !! | AAAGTAAAATAGAGTTTAAT+TGG | + | chr1.4:50837113-50837132 | MS.gene47370:intron | 15.0% |
| !! | TAAATAGAGAAATACTTAAA+TGG | - | chr1.4:50836052-50836071 | None:intergenic | 15.0% |
| !! | TATTAAATATTAAAGTAGCA+TGG | - | chr1.4:50837084-50837103 | None:intergenic | 15.0% |
| !!! | ATAATTTATTTTTCTCTTCT+TGG | - | chr1.4:50836342-50836361 | None:intergenic | 15.0% |
| !!! | ATTTATATATGTAATTTGCA+TGG | - | chr1.4:50837186-50837205 | None:intergenic | 15.0% |
| !!! | GAAGTATATGTTTTTATTTT+CGG | + | chr1.4:50836536-50836555 | MS.gene47370:intron | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | chr1.4:50836138-50836157 | MS.gene47370:intron | 15.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr1.4:50836163-50836182 | MS.gene47370:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr1.4:50836236-50836255 | MS.gene47370:intron | 20.0% |
| !! | ATCGAAAACGTATAAATATA+TGG | + | chr1.4:50836389-50836408 | MS.gene47370:intron | 20.0% |
| !! | ATTCAAAATTTACGAATGTT+TGG | + | chr1.4:50835289-50835308 | MS.gene47370:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr1.4:50836237-50836256 | MS.gene47370:intron | 20.0% |
| !! | TAACCCTATATTTAAACTTA+TGG | + | chr1.4:50835179-50835198 | MS.gene47370:intron | 20.0% |
| !! | TATATCAATGACTTATATTG+AGG | - | chr1.4:50836623-50836642 | None:intergenic | 20.0% |
| !! | TCATTCTCGTATATTATTAT+CGG | + | chr1.4:50835365-50835384 | MS.gene47370:intron | 20.0% |
| !! | TGTCCATAAGTTTAAATATA+GGG | - | chr1.4:50835185-50835204 | None:intergenic | 20.0% |
| !! | TTGTCCATAAGTTTAAATAT+AGG | - | chr1.4:50835186-50835205 | None:intergenic | 20.0% |
| !!! | AAATATATGGTGTTGATATT+GGG | + | chr1.4:50836402-50836421 | MS.gene47370:intron | 20.0% |
| !!! | AAGCGCAAATAATTTTATTT+TGG | + | chr1.4:50835910-50835929 | MS.gene47370:intron | 20.0% |
| !!! | AATATTTTGTGTGTTTGTTA+AGG | + | chr1.4:50835414-50835433 | MS.gene47370:intron | 20.0% |
| !!! | ATTACAATGTGTTATTTTAG+TGG | + | chr1.4:50836687-50836706 | MS.gene47370:intron | 20.0% |
| !!! | ATTACATTCTAGAAGTTATT+AGG | - | chr1.4:50835155-50835174 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr1.4:50836273-50836292 | MS.gene47370:intron | 20.0% |
| !!! | TAAATATATGGTGTTGATAT+TGG | + | chr1.4:50836401-50836420 | MS.gene47370:intron | 20.0% |
| !!! | TTATTTTGTCATAATCCTTA+CGG | + | chr1.4:50836463-50836482 | MS.gene47370:intron | 20.0% |
| ! | AATGAAGGCAAAATATAGTT+TGG | + | chr1.4:50836566-50836585 | MS.gene47370:intron | 25.0% |
| ! | ACACATACATACATACATAT+TGG | - | chr1.4:50836974-50836993 | None:intergenic | 25.0% |
| ! | ATAAATTTATTCTAACGGTC+TGG | + | chr1.4:50836645-50836664 | MS.gene47370:intron | 25.0% |
| ! | ATGGAAAAAATGATGAAGTA+TGG | + | chr1.4:50835486-50835505 | MS.gene47370:CDS | 25.0% |
| ! | CAAAGTAGGTCAATTAAATT+GGG | - | chr1.4:50836103-50836122 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr1.4:50836162-50836181 | MS.gene47370:intron | 25.0% |
| ! | TGATCAACTTTATGAGTTTA+TGG | - | chr1.4:50836862-50836881 | None:intergenic | 25.0% |
| ! | TGGAAAAAATGATGAAGTAT+GGG | + | chr1.4:50835487-50835506 | MS.gene47370:CDS | 25.0% |
| ! | TGTATAAATAAAGGAGAAAG+TGG | + | chr1.4:50836147-50836166 | MS.gene47370:intron | 25.0% |
| ! | TTTATGAGTTTATGGATTCA+CGG | - | chr1.4:50836854-50836873 | None:intergenic | 25.0% |
| !!! | AAACTGTTGTTTCAATTTAG+AGG | + | chr1.4:50837406-50837425 | MS.gene47370:CDS | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr1.4:50836272-50836291 | MS.gene47370:intron | 25.0% |
| !!! | TAGTTTTTTTTTGCTGTATC+TGG | + | chr1.4:50835241-50835260 | MS.gene47370:intron | 25.0% |
| !!! | TCATCATTTTTTCCATTTCT+GGG | - | chr1.4:50835482-50835501 | None:intergenic | 25.0% |
| !!! | TTATTTTAGTGGTGTAAGTT+GGG | + | chr1.4:50836698-50836717 | MS.gene47370:intron | 25.0% |
| !!! | TTCATCATTTTTTCCATTTC+TGG | - | chr1.4:50835483-50835502 | None:intergenic | 25.0% |
| AGTATTTGTGTGTGTCTAAA+TGG | + | chr1.4:50836007-50836026 | MS.gene47370:intron | 30.0% | |
| ATCAATGACTTATATTGAGG+TGG | - | chr1.4:50836620-50836639 | None:intergenic | 30.0% | |
| CCAAAGTAGGTCAATTAAAT+TGG | - | chr1.4:50836104-50836123 | None:intergenic | 30.0% | |
| CCAATTTAATTGACCTACTT+TGG | + | chr1.4:50836101-50836120 | MS.gene47370:intron | 30.0% | |
| GAACAATACCTAAATGGTTA+CGG | + | chr1.4:50835863-50835882 | MS.gene47370:intron | 30.0% | |
| GTCAATGAACAATACCTAAA+TGG | + | chr1.4:50835857-50835876 | MS.gene47370:intron | 30.0% | |
| TATCTGGCATATATATAGCT+TGG | + | chr1.4:50835257-50835276 | MS.gene47370:intron | 30.0% | |
| TGTCACCATGATTTCATTAA+GGG | - | chr1.4:50836756-50836775 | None:intergenic | 30.0% | |
| TTACTATACAGAAATGTCAG+TGG | + | chr1.4:50837283-50837302 | MS.gene47370:CDS | 30.0% | |
| TTTACCTCCTCATTGAAATT+TGG | - | chr1.4:50836493-50836512 | None:intergenic | 30.0% | |
| ! | ATTTTCGGTGAACTTAATGA+AGG | + | chr1.4:50836551-50836570 | MS.gene47370:intron | 30.0% |
| ! | GTCTAAATGGATTTCATTTG+TGG | + | chr1.4:50836020-50836039 | MS.gene47370:intron | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | chr1.4:50836250-50836269 | MS.gene47370:intron | 30.0% |
| ! | TTTTACCTTGATATGAGCAT+TGG | - | chr1.4:50835072-50835091 | None:intergenic | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | chr1.4:50836251-50836270 | MS.gene47370:intron | 30.0% |
| !!! | GTTATTTTAGTGGTGTAAGT+TGG | + | chr1.4:50836697-50836716 | MS.gene47370:intron | 30.0% |
| !!! | TATTTTAGTGGTGTAAGTTG+GGG | + | chr1.4:50836699-50836718 | MS.gene47370:intron | 30.0% |
| AAAGAACAAGGTAACTCTTG+TGG | + | chr1.4:50837248-50837267 | MS.gene47370:CDS | 35.0% | |
| AAAGCTTCATCTTCCTTTGA+GGG | - | chr1.4:50835596-50835615 | None:intergenic | 35.0% | |
| AACCAAATAGCAATTTGACG+AGG | - | chr1.4:50835639-50835658 | None:intergenic | 35.0% | |
| AAGGCTATGTTGAAAGAACA+AGG | + | chr1.4:50837236-50837255 | MS.gene47370:CDS | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr1.4:50836286-50836305 | MS.gene47370:intron | 35.0% | |
| AGATACAATGTTCCCAGAAA+TGG | + | chr1.4:50835467-50835486 | MS.gene47370:CDS | 35.0% | |
| CAACAGTTGAACATTGATGA+AGG | + | chr1.4:50837383-50837402 | MS.gene47370:CDS | 35.0% | |
| GTAGGTCAATTAAATTGGGA+CGG | - | chr1.4:50836099-50836118 | None:intergenic | 35.0% | |
| GTGTCACCATGATTTCATTA+AGG | - | chr1.4:50836757-50836776 | None:intergenic | 35.0% | |
| TACAACCAATGCTCATATCA+AGG | + | chr1.4:50835064-50835083 | MS.gene47370:CDS | 35.0% | |
| TAGTCCAAATTTCAATGAGG+AGG | + | chr1.4:50836486-50836505 | MS.gene47370:intron | 35.0% | |
| TAGTTATAAGGTACAGAAGC+AGG | - | chr1.4:50837473-50837492 | None:intergenic | 35.0% | |
| TATATTGAGGTGGTGTAAGT+TGG | - | chr1.4:50836610-50836629 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr1.4:50836117-50836136 | None:intergenic | 35.0% | |
| TGACACCCTTAATGAAATCA+TGG | + | chr1.4:50836748-50836767 | MS.gene47370:intron | 35.0% | |
| TTCACTTAGACACCAATTTG+AGG | + | chr1.4:50835710-50835729 | MS.gene47370:CDS | 35.0% | |
| TTGAAATTTGGACTACCGTA+AGG | - | chr1.4:50836481-50836500 | None:intergenic | 35.0% | |
| ! | GTGTGTTTGTTAAGGAATGA+TGG | + | chr1.4:50835422-50835441 | MS.gene47370:intron | 35.0% |
| !! | AAATTTGTTGTTCCCTGTTC+AGG | + | chr1.4:50837202-50837221 | MS.gene47370:intron | 35.0% |
| !! | ATACAAGTGTTCAAGTTGCT+TGG | - | chr1.4:50835688-50835707 | None:intergenic | 35.0% |
| !!! | TATTTTGGCGCATACACAAA+TGG | + | chr1.4:50835925-50835944 | MS.gene47370:intron | 35.0% |
| AACTCTTGTGGTAGAATGCA+AGG | + | chr1.4:50837260-50837279 | MS.gene47370:CDS | 40.0% | |
| AAGGAAGATGAAGCTTTCCA+AGG | + | chr1.4:50835599-50835618 | MS.gene47370:CDS | 40.0% | |
| AAGTGAACAGATGGAATCAC+TGG | + | chr1.4:50835539-50835558 | MS.gene47370:CDS | 40.0% | |
| AGATCAAACTAGACCCTCAA+AGG | + | chr1.4:50835580-50835599 | MS.gene47370:CDS | 40.0% | |
| ATGAAGCTTTCCAAGGAGTT+AGG | + | chr1.4:50835606-50835625 | MS.gene47370:CDS | 40.0% | |
| CCTTAGACACAACCTCAAAT+TGG | - | chr1.4:50835725-50835744 | None:intergenic | 40.0% | |
| CGAACGCGTAACTAAAATCA+TGG | + | chr1.4:50836795-50836814 | MS.gene47370:intron | 40.0% | |
| CGGTAGTCCAAATTTCAATG+AGG | + | chr1.4:50836483-50836502 | MS.gene47370:intron | 40.0% | |
| GAAACAAAGTTGCAGTGCTA+TGG | - | chr1.4:50837010-50837029 | None:intergenic | 40.0% | |
| GAAAGCTTCATCTTCCTTTG+AGG | - | chr1.4:50835597-50835616 | None:intergenic | 40.0% | |
| GCGATTAACAAGTGAACAGA+TGG | + | chr1.4:50835530-50835549 | MS.gene47370:CDS | 40.0% | |
| GTAGTTGTAGAGGAAGCTTA+AGG | - | chr1.4:50835047-50835066 | None:intergenic | 40.0% | |
| TAACACAGCCGTAACCATTT+AGG | - | chr1.4:50835874-50835893 | None:intergenic | 40.0% | |
| TAAGGAAAAACAGCAGCTTC+AGG | + | chr1.4:50835740-50835759 | MS.gene47370:CDS | 40.0% | |
| TCAACTTCACAACCTGAACA+GGG | - | chr1.4:50837217-50837236 | None:intergenic | 40.0% | |
| TGAAGCTTTCCAAGGAGTTA+GGG | + | chr1.4:50835607-50835626 | MS.gene47370:CDS | 40.0% | |
| TGGAAGTGAAACAACAAGAC+TGG | + | chr1.4:50835442-50835461 | MS.gene47370:CDS | 40.0% | |
| TTCAACTTCACAACCTGAAC+AGG | - | chr1.4:50837218-50837237 | None:intergenic | 40.0% | |
| ! | AACAGTAGAAAGCACATCAG+AGG | + | chr1.4:50837316-50837335 | MS.gene47370:CDS | 40.0% |
| ! | AGCCTCGTCAAATTGCTATT+TGG | + | chr1.4:50835634-50835653 | MS.gene47370:CDS | 40.0% |
| ! | CCAATTTGAGGTTGTGTCTA+AGG | + | chr1.4:50835722-50835741 | MS.gene47370:CDS | 40.0% |
| ! | CCATGTCTCTTTTGTAGACA+CGG | + | chr1.4:50836944-50836963 | MS.gene47370:intron | 40.0% |
| ! | GTAAGTTGGGGCATTCTATT+TGG | + | chr1.4:50836711-50836730 | MS.gene47370:intron | 40.0% |
| ! | TACATGTGTCGATATCACGT+TGG | - | chr1.4:50835328-50835347 | None:intergenic | 40.0% |
| !! | ACGGCTGTGTTATTTAGATG+AGG | + | chr1.4:50835882-50835901 | MS.gene47370:intron | 40.0% |
| !! | ACTGGAGAGTAGTTTTCAAG+AGG | + | chr1.4:50835557-50835576 | MS.gene47370:CDS | 40.0% |
| !! | AGCATTGGTTGTAGTTGTAG+AGG | - | chr1.4:50835057-50835076 | None:intergenic | 40.0% |
| !! | CGGCTGTGTTATTTAGATGA+GGG | + | chr1.4:50835883-50835902 | MS.gene47370:intron | 40.0% |
| !! | TGTTCAGGTTGTGAAGTTGA+AGG | + | chr1.4:50837217-50837236 | MS.gene47370:intron | 40.0% |
| AAAACAGCAGCTTCAGGATG+AGG | + | chr1.4:50835746-50835765 | MS.gene47370:CDS | 45.0% | |
| AGGAAGCTTAAGGAAGACTC+TGG | - | chr1.4:50835037-50835056 | None:intergenic | 45.0% | |
| ATGGGTCAGTTATTCCGGAA+CGG | + | chr1.4:50836291-50836310 | MS.gene47370:intron | 45.0% | |
| CCGTGTCTACAAAAGAGACA+TGG | - | chr1.4:50836947-50836966 | None:intergenic | 45.0% | |
| CTTAAGGAAGACTCTGGTTG+AGG | - | chr1.4:50835031-50835050 | None:intergenic | 45.0% | |
| GGTCAATTAAATTGGGACGG+AGG | - | chr1.4:50836096-50836115 | None:intergenic | 45.0% | |
| ! | AGTTGGGGCATTCTATTTGG+TGG | + | chr1.4:50836714-50836733 | MS.gene47370:intron | 45.0% |
| !! | ATATTATAAATTTATTCTAA+CGG | + | chr1.4:50836640-50836659 | MS.gene47370:intron | 5.0% |
| CTTTCCCTTCACCTCTCTGT+TGG | - | chr1.4:50837357-50837376 | None:intergenic | 50.0% | |
| GGTTCCAAAACAGACGTGCT+AGG | + | chr1.4:50835655-50835674 | MS.gene47370:CDS | 50.0% | |
| GTCAGTTATTCCGGAACGGA+GGG | + | chr1.4:50836295-50836314 | MS.gene47370:intron | 50.0% | |
| GTCGATATCACGTTGGACAC+TGG | - | chr1.4:50835321-50835340 | None:intergenic | 50.0% | |
| GTGTTCCACTATTGCCCTAC+TGG | + | chr1.4:50837447-50837466 | MS.gene47370:CDS | 50.0% | |
| TCCAAAACAGACGTGCTAGG+TGG | + | chr1.4:50835658-50835677 | MS.gene47370:CDS | 50.0% | |
| TCTACGTTGCTCCAACAGAG+AGG | + | chr1.4:50837343-50837362 | MS.gene47370:CDS | 50.0% | |
| TCTTGGATCCGACGTCTACA+TGG | - | chr1.4:50836325-50836344 | None:intergenic | 50.0% | |
| TGCTCCAACAGAGAGGTGAA+GGG | + | chr1.4:50837350-50837369 | MS.gene47370:CDS | 50.0% | |
| TTGCTCCAACAGAGAGGTGA+AGG | + | chr1.4:50837349-50837368 | MS.gene47370:CDS | 50.0% | |
| ! | TCCACCTAGCACGTCTGTTT+TGG | - | chr1.4:50835662-50835681 | None:intergenic | 50.0% |
| !! | AGGGAGTACCATGTAGACGT+CGG | + | chr1.4:50836314-50836333 | MS.gene47370:intron | 50.0% |
| ACATGGTACTCCCTCCGTTC+CGG | - | chr1.4:50836308-50836327 | None:intergenic | 55.0% | |
| AGGCTGTAGCCCTAACTCCT+TGG | - | chr1.4:50835619-50835638 | None:intergenic | 55.0% | |
| AGGTACAGAAGCAGGCCAGT+AGG | - | chr1.4:50837465-50837484 | None:intergenic | 55.0% | |
| GGTACAGAAGCAGGCCAGTA+GGG | - | chr1.4:50837464-50837483 | None:intergenic | 55.0% | |
| GGTCAGTTATTCCGGAACGG+AGG | + | chr1.4:50836294-50836313 | MS.gene47370:intron | 55.0% | |
| GCAGGCCAGTAGGGCAATAG+TGG | - | chr1.4:50837455-50837474 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 50834995 | 50837502 | 50834995 | ID=MS.gene47370 |
| chr1.4 | mRNA | 50834995 | 50837502 | 50834995 | ID=MS.gene47370.t1;Parent=MS.gene47370 |
| chr1.4 | exon | 50834995 | 50835085 | 50834995 | ID=MS.gene47370.t1.exon1;Parent=MS.gene47370.t1 |
| chr1.4 | CDS | 50834995 | 50835085 | 50834995 | ID=cds.MS.gene47370.t1;Parent=MS.gene47370.t1 |
| chr1.4 | exon | 50835436 | 50835767 | 50835436 | ID=MS.gene47370.t1.exon2;Parent=MS.gene47370.t1 |
| chr1.4 | CDS | 50835436 | 50835767 | 50835436 | ID=cds.MS.gene47370.t1;Parent=MS.gene47370.t1 |
| chr1.4 | exon | 50837224 | 50837502 | 50837224 | ID=MS.gene47370.t1.exon3;Parent=MS.gene47370.t1 |
| chr1.4 | CDS | 50837224 | 50837502 | 50837224 | ID=cds.MS.gene47370.t1;Parent=MS.gene47370.t1 |
| Gene Sequence |
| Protein sequence |
