AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47496

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47496.t1 MTR_4g086835 95.714 420 15 1 1 420 1 417 0.0 825
MS.gene47496.t1 MTR_4g086835 95.476 420 15 2 1 420 1 416 0.0 818
MS.gene47496.t1 MTR_4g113140 39.788 377 158 14 7 367 5 328 3.31e-65 215
MS.gene47496.t1 MTR_1g093080 34.903 361 145 12 42 371 8 309 6.09e-46 163
MS.gene47496.t1 MTR_5g054300 35.942 345 142 12 41 371 16 295 1.96e-44 158
MS.gene47496.t1 MTR_5g017980 58.571 140 51 4 274 410 190 325 1.31e-41 150
MS.gene47496.t1 MTR_5g017980 42.958 142 54 3 8 149 6 120 6.60e-21 93.2
MS.gene47496.t1 MTR_5g017980 57.857 140 51 5 274 410 189 323 3.66e-39 143
MS.gene47496.t1 MTR_5g017980 43.704 135 49 3 8 142 6 113 3.80e-20 90.9
MS.gene47496.t1 MTR_5g017980 57.857 140 51 5 274 410 190 324 3.70e-39 143
MS.gene47496.t1 MTR_5g017980 42.958 142 54 3 8 149 6 120 7.45e-21 93.2
MS.gene47496.t1 MTR_1g093080 34.628 309 120 10 44 327 10 261 2.79e-36 134
MS.gene47496.t1 MTR_1g093080 29.787 282 116 10 44 300 10 234 6.91e-20 89.0
MS.gene47496.t1 MTR_1g053830 47.059 68 36 0 274 341 15 82 4.14e-15 71.2
MS.gene47496.t1 MTR_7g089010 50.746 67 32 1 270 336 84 149 4.35e-15 75.9
MS.gene47496.t1 MTR_2g023580 51.471 68 33 0 263 330 41 108 1.81e-14 73.2
MS.gene47496.t1 MTR_7g069660 40.698 86 51 0 245 330 39 124 4.44e-14 73.6
MS.gene47496.t1 MTR_1g080330 61.111 54 21 0 277 330 175 228 7.37e-14 72.0
MS.gene47496.t1 MTR_7g098250 53.030 66 31 0 277 342 262 327 7.66e-14 73.6
MS.gene47496.t1 MTR_7g115530 62.963 54 20 0 277 330 218 271 7.73e-14 72.0
MS.gene47496.t1 MTR_5g041350 55.172 58 26 0 274 331 12 69 9.47e-14 72.4
MS.gene47496.t1 MTR_7g115530 62.963 54 20 0 277 330 218 271 1.37e-13 71.6
MS.gene47496.t1 MTR_1g080330 61.111 54 21 0 277 330 175 228 1.50e-13 72.0
MS.gene47496.t1 MTR_4g121020 53.731 67 30 1 274 340 212 277 1.58e-13 72.8
MS.gene47496.t1 MTR_4g121020 53.731 67 30 1 274 340 212 277 1.58e-13 72.8
MS.gene47496.t1 MTR_8g066310 48.980 98 43 4 251 341 142 239 1.72e-13 71.6
MS.gene47496.t1 MTR_7g115530 62.963 54 20 0 277 330 218 271 1.76e-13 71.6
MS.gene47496.t1 MTR_4g121020 53.731 67 30 1 274 340 108 173 1.80e-13 72.4
MS.gene47496.t1 MTR_7g088070 49.315 73 36 1 269 341 42 113 1.92e-13 70.9
MS.gene47496.t1 MTR_6g005650 69.014 71 7 1 232 302 84 139 2.02e-13 70.9
MS.gene47496.t1 MTR_2g450070 48.052 77 35 3 276 351 212 284 2.15e-13 72.4
MS.gene47496.t1 MTR_2g450070 48.052 77 35 3 276 351 212 284 2.17e-13 72.4
MS.gene47496.t1 MTR_7g115530 62.963 54 20 0 277 330 218 271 2.49e-13 71.6
MS.gene47496.t1 MTR_1g013170 50.000 68 33 1 272 339 186 252 2.90e-13 71.6
MS.gene47496.t1 MTR_5g014040 47.826 69 35 1 268 336 302 369 2.97e-13 72.0
MS.gene47496.t1 MTR_7g088070 53.968 63 29 0 269 331 42 104 3.40e-13 70.1
MS.gene47496.t1 MTR_4g064730 47.059 68 35 1 273 340 127 193 4.07e-13 70.1
MS.gene47496.t1 MTR_0223s0040 63.265 49 18 0 282 330 23 71 5.49e-13 69.3
MS.gene47496.t1 MTR_4g078810 43.820 89 45 2 273 357 154 241 5.94e-13 70.5
MS.gene47496.t1 MTR_2g034960 50.746 67 32 1 274 340 208 273 9.82e-13 70.5
MS.gene47496.t1 MTR_1g112370 61.224 49 19 0 282 330 27 75 1.02e-12 69.3
MS.gene47496.t1 MTR_3g106220 42.529 87 38 2 276 351 197 282 1.16e-12 70.1
MS.gene47496.t1 MTR_2g027860 60.000 55 22 0 277 331 49 103 1.22e-12 68.9
MS.gene47496.t1 MTR_4g098870 31.250 128 76 2 209 336 253 368 1.28e-12 70.1
MS.gene47496.t1 MTR_4g098870 31.250 128 76 2 209 336 273 388 1.35e-12 69.7
MS.gene47496.t1 MTR_7g405800 84.211 38 6 0 224 261 33 70 1.58e-12 67.0
MS.gene47496.t1 MTR_4g098870 31.250 128 76 2 209 336 292 407 1.71e-12 69.7
MS.gene47496.t1 MTR_4g098870 31.250 128 76 2 209 336 273 388 1.78e-12 69.3
MS.gene47496.t1 MTR_5g029470 46.465 99 48 2 248 341 187 285 1.79e-12 68.9
MS.gene47496.t1 MTR_4g098870 31.250 128 76 2 209 336 253 368 1.82e-12 69.3
MS.gene47496.t1 MTR_2g086450 53.448 58 27 0 274 331 42 99 2.84e-12 68.2
MS.gene47496.t1 MTR_6g032990 44.000 75 41 1 274 348 39 112 3.88e-12 67.8
MS.gene47496.t1 MTR_1g032570 47.761 67 34 1 274 340 128 193 4.40e-12 68.2
MS.gene47496.t1 MTR_7g115530 61.538 52 20 0 277 328 218 269 4.44e-12 66.6
MS.gene47496.t1 MTR_1g032570 47.761 67 34 1 274 340 197 262 4.95e-12 68.2
MS.gene47496.t1 MTR_6g071625 41.935 93 47 2 264 349 184 276 5.46e-12 67.4
MS.gene47496.t1 MTR_1g053835 48.529 68 35 0 274 341 255 322 7.39e-12 67.0
MS.gene47496.t1 MTR_5g027440 54.098 61 26 1 277 335 25 85 1.44e-11 65.1
MS.gene47496.t1 MTR_4g131580 51.613 62 29 1 274 335 197 257 1.70e-11 66.6
MS.gene47496.t1 MTR_7g115530 58.491 53 22 0 277 329 218 270 1.95e-11 65.1
MS.gene47496.t1 MTR_4g081710 51.724 58 28 0 274 331 14 71 2.00e-11 65.5
MS.gene47496.t1 MTR_4g021790 49.180 61 30 1 275 335 166 225 2.79e-11 64.3
MS.gene47496.t1 MTR_7g093030 50.877 57 28 0 274 330 209 265 2.90e-11 64.3
MS.gene47496.t1 MTR_3g450310 50.000 56 28 0 275 330 17 72 3.07e-11 63.2
MS.gene47496.t1 MTR_1g090670 56.364 55 24 0 277 331 44 98 3.15e-11 64.3
MS.gene47496.t1 MTR_6g444980 55.172 58 26 0 274 331 32 89 3.30e-11 65.1
MS.gene47496.t1 MTR_2g090675 49.180 61 30 1 276 336 160 219 3.38e-11 65.1
MS.gene47496.t1 MTR_6g444980 55.172 58 26 0 274 331 32 89 3.41e-11 64.7
MS.gene47496.t1 MTR_2g084230 45.455 66 36 0 265 330 85 150 3.51e-11 64.3
MS.gene47496.t1 MTR_3g064840 49.315 73 36 1 269 340 266 338 4.14e-11 65.1
MS.gene47496.t1 MTR_7g117705 47.826 69 33 2 276 344 190 255 5.16e-11 64.7
MS.gene47496.t1 MTR_2g027800 56.364 55 24 0 277 331 39 93 5.70e-11 63.5
MS.gene47496.t1 MTR_2g084230 45.455 66 36 0 265 330 85 150 6.31e-11 63.9
MS.gene47496.t1 MTR_2g027800 56.364 55 24 0 277 331 39 93 7.33e-11 63.5
MS.gene47496.t1 MTR_7g093030 50.877 57 28 0 274 330 209 265 7.51e-11 63.9
MS.gene47496.t1 MTR_1g021520 41.975 81 45 1 272 352 121 199 8.96e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47496.t1 AT2G03500 40.533 375 158 10 7 368 5 327 2.58e-64 213
MS.gene47496.t1 AT4G37180 35.561 374 157 10 9 377 12 306 1.84e-50 174
MS.gene47496.t1 AT4G37180 35.372 376 162 12 9 377 12 313 2.84e-48 169
MS.gene47496.t1 AT4G37180 35.737 319 135 8 9 327 12 260 1.40e-43 154
MS.gene47496.t1 AT1G49560 53.797 158 57 5 261 406 172 325 1.35e-38 142
MS.gene47496.t1 AT1G68670 69.892 93 20 1 274 358 212 304 7.70e-36 135
MS.gene47496.t1 AT1G68670 35.000 120 62 4 36 139 8 127 1.20e-11 66.2
MS.gene47496.t1 AT1G13300 70.787 89 21 2 276 359 180 268 4.45e-34 130
MS.gene47496.t1 AT1G25550 54.622 119 47 2 274 385 206 324 2.26e-33 128
MS.gene47496.t1 AT1G25550 33.588 131 67 2 36 146 12 142 9.33e-15 75.5
MS.gene47496.t1 AT3G25790 57.292 96 36 1 281 371 200 295 1.72e-30 120
MS.gene47496.t1 AT1G49560 66.667 81 21 2 251 327 164 242 5.21e-25 103
MS.gene47496.t1 AT1G25550 83.333 54 9 0 274 327 206 259 1.11e-24 103
MS.gene47496.t1 AT1G25550 33.588 131 67 2 36 146 12 142 1.72e-14 73.9
MS.gene47496.t1 AT3G25790 78.723 47 10 0 281 327 200 246 1.69e-19 88.2
MS.gene47496.t1 AT3G10760 50.704 71 34 1 266 336 94 163 2.90e-15 77.0
MS.gene47496.t1 AT5G05090 50.746 67 32 1 270 336 74 139 2.90e-15 75.9
MS.gene47496.t1 AT2G40970 50.746 67 32 1 270 336 98 163 3.99e-15 75.1
MS.gene47496.t1 AT2G38300 46.053 76 41 0 255 330 32 107 1.49e-14 74.7
MS.gene47496.t1 AT5G59570 50.000 64 31 1 273 336 137 199 1.92e-14 73.9
MS.gene47496.t1 AT5G59570 50.000 64 31 1 273 336 137 199 1.92e-14 73.9
MS.gene47496.t1 AT3G04450 50.685 73 35 1 258 330 220 291 1.60e-13 71.6
MS.gene47496.t1 AT2G06020 35.652 115 72 1 232 346 41 153 1.89e-13 71.2
MS.gene47496.t1 AT3G04450 43.333 90 50 1 258 347 220 308 3.36e-13 71.2
MS.gene47496.t1 AT3G16857 43.137 102 44 2 276 377 236 323 3.56e-13 72.0
MS.gene47496.t1 AT3G16857 43.137 102 44 2 276 377 166 253 3.57e-13 71.6
MS.gene47496.t1 AT5G58080 50.794 63 30 1 274 336 191 252 3.63e-13 71.6
MS.gene47496.t1 AT3G46640 48.438 64 32 1 273 336 140 202 4.11e-13 70.5
MS.gene47496.t1 AT3G46640 48.438 64 32 1 273 336 140 202 4.11e-13 70.5
MS.gene47496.t1 AT3G13040 58.929 56 23 0 276 331 240 295 4.15e-13 71.2
MS.gene47496.t1 AT3G13040 58.929 56 23 0 276 331 240 295 4.15e-13 71.2
MS.gene47496.t1 AT3G13040 58.929 56 23 0 276 331 240 295 4.15e-13 71.2
MS.gene47496.t1 AT3G16857 43.137 102 44 2 276 377 236 323 4.21e-13 71.6
MS.gene47496.t1 AT3G04450 43.333 90 50 1 258 347 180 268 4.36e-13 70.9
MS.gene47496.t1 AT3G04450 43.333 90 50 1 258 347 180 268 4.36e-13 70.9
MS.gene47496.t1 AT4G28610 52.239 67 31 1 277 342 225 291 5.19e-13 70.9
MS.gene47496.t1 AT2G01760 54.839 62 27 1 275 336 133 193 5.40e-13 70.1
MS.gene47496.t1 AT3G46640 48.438 64 32 1 273 336 140 202 5.66e-13 70.1
MS.gene47496.t1 AT2G01760 54.839 62 27 1 275 336 226 286 6.18e-13 70.5
MS.gene47496.t1 AT2G01760 54.839 62 27 1 275 336 198 258 6.79e-13 70.1
MS.gene47496.t1 AT2G01060 60.000 55 22 0 277 331 15 69 7.64e-13 68.9
MS.gene47496.t1 AT5G29000 56.140 57 25 0 274 330 228 284 1.40e-12 68.6
MS.gene47496.t1 AT5G18240 55.172 58 26 0 274 331 42 99 1.69e-12 68.9
MS.gene47496.t1 AT5G18240 55.172 58 26 0 274 331 42 99 1.69e-12 68.9
MS.gene47496.t1 AT5G18240 55.172 58 26 0 274 331 42 99 1.92e-12 68.9
MS.gene47496.t1 AT2G20400 50.000 70 34 1 277 345 231 300 1.94e-12 68.9
MS.gene47496.t1 AT2G20400 53.125 64 29 1 277 340 231 293 1.96e-12 68.9
MS.gene47496.t1 AT5G18240 55.172 58 26 0 274 331 42 99 2.04e-12 68.9
MS.gene47496.t1 AT5G18240 55.172 58 26 0 274 331 42 99 2.04e-12 68.9
MS.gene47496.t1 AT3G04030 53.448 58 27 0 274 331 42 99 2.30e-12 68.6
MS.gene47496.t1 AT3G04030 53.448 58 27 0 274 331 42 99 2.75e-12 68.6
MS.gene47496.t1 AT5G29000 59.259 54 22 0 277 330 231 284 3.77e-12 68.2
MS.gene47496.t1 AT5G29000 59.259 54 22 0 277 330 188 241 3.95e-12 67.8
MS.gene47496.t1 AT5G29000 59.259 54 22 0 277 330 188 241 3.95e-12 67.8
MS.gene47496.t1 AT2G02060 50.000 62 31 0 269 330 21 82 6.22e-12 65.9
MS.gene47496.t1 AT2G02060 50.000 62 31 0 269 330 21 82 6.22e-12 65.9
MS.gene47496.t1 AT5G06800 44.156 77 40 2 255 331 173 246 6.86e-12 66.2
MS.gene47496.t1 AT1G14600 51.613 62 30 0 269 330 15 76 6.87e-12 65.9
MS.gene47496.t1 AT5G45580 48.529 68 35 0 277 344 7 74 7.09e-12 65.9
MS.gene47496.t1 AT5G45580 47.826 69 36 0 277 345 23 91 7.81e-12 65.9
MS.gene47496.t1 AT2G25180 46.154 65 34 1 276 340 194 257 7.88e-12 67.4
MS.gene47496.t1 AT1G32240 45.455 88 47 1 265 351 200 287 9.14e-12 66.6
MS.gene47496.t1 AT3G12730 55.172 58 26 0 274 331 20 77 1.05e-11 65.1
MS.gene47496.t1 AT1G32240 45.455 88 47 1 265 351 200 287 1.09e-11 66.6
MS.gene47496.t1 AT5G16560 50.000 78 37 2 265 340 206 283 2.33e-11 65.5
MS.gene47496.t1 AT1G67710 51.724 58 28 0 279 336 121 178 2.88e-11 65.5
MS.gene47496.t1 AT1G67710 51.724 58 28 0 279 336 130 187 2.92e-11 65.5
MS.gene47496.t1 AT1G67710 51.724 58 28 0 279 336 195 252 3.77e-11 65.5
MS.gene47496.t1 AT5G06800 44.156 77 40 2 255 331 173 246 3.94e-11 64.7
MS.gene47496.t1 AT1G79430 55.172 58 26 0 274 331 31 88 4.27e-11 64.7
MS.gene47496.t1 AT3G24120 55.172 58 26 0 274 331 38 95 4.55e-11 63.9
MS.gene47496.t1 AT5G06800 44.156 77 40 2 255 331 173 246 4.70e-11 64.3
MS.gene47496.t1 AT4G13640 56.364 55 24 0 277 331 37 91 5.00e-11 63.5
MS.gene47496.t1 AT3G24120 55.172 58 26 0 274 331 38 95 5.02e-11 63.9
MS.gene47496.t1 AT4G13640 56.364 55 24 0 277 331 37 91 5.27e-11 63.5
MS.gene47496.t1 AT2G42660 55.102 49 22 0 282 330 55 103 8.69e-11 62.4
MS.gene47496.t1 AT2G40260 46.154 65 35 0 266 330 71 135 9.14e-11 63.9

Find 92 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTAGTTCTTGGAGGTTTA+TGG 0.186325 4.3:+26055697 MS.gene47496:CDS
GGTTCTTCCTTCTCTTCTTT+AGG 0.234160 4.3:-26054405 None:intergenic
AAAGAGAGCCTATTCCTTAC+AGG 0.270823 4.3:-26054426 None:intergenic
TTCAGCCGCAGCAGACTTCT+AGG 0.300158 4.3:+26054574 MS.gene47496:CDS
GAGGAAATTAGCGATGGTTT+TGG 0.303370 4.3:-26053525 None:intergenic
GATCAGTCTGTTGTAGTTCT+TGG 0.310407 4.3:+26055687 MS.gene47496:CDS
ACAGAAGAATACGGTGAAAA+AGG 0.316862 4.3:-26054354 None:intergenic
ACAAATCTCCGGTGCAATTC+CGG 0.337882 4.3:-26054618 None:intergenic
GGAATAAACTCTTCCAAAAC+TGG 0.355348 4.3:-26053923 None:intergenic
ATGGAGTTTGGAGAGTTTAT+CGG 0.366175 4.3:-26053576 None:intergenic
ATGAGTTCTCTAATTTGCTT+TGG 0.366259 4.3:-26055261 None:intergenic
AGAGTTTATCGGAGGTTGTT+TGG 0.367071 4.3:-26053565 None:intergenic
AGAGAGGAAATCATGGAGTT+TGG 0.369125 4.3:-26053588 None:intergenic
TACTACTACAAGATTGAAAA+AGG 0.370440 4.3:-26054305 None:intergenic
GATCGAGAAACAGTTCTAAC+AGG 0.377734 4.3:+26054496 MS.gene47496:CDS
GCAGCAAAGATAAGAAGAAT+TGG 0.382485 4.3:+26054017 MS.gene47496:CDS
AGAGAACTCATGCAAGTTGA+TGG 0.388920 4.3:+26055273 MS.gene47496:CDS
GGATGAGTTCTGTTCAGTTA+TGG 0.403657 4.3:+26054038 MS.gene47496:CDS
CGCATACTCGGCTGCACGGT+TGG 0.404437 4.3:-26054540 None:intergenic
AAGAGTCTGAGGGAAGGATT+TGG 0.407195 4.3:+26054465 MS.gene47496:CDS
AGGAAGAACCTGTAAGGAAT+AGG 0.418786 4.3:+26054418 MS.gene47496:CDS
AATACGAACCGTCGTTTAAG+AGG 0.421808 4.3:-26053673 None:intergenic
CAGTCTGTTGTAGTTCTTGG+AGG 0.429416 4.3:+26055690 MS.gene47496:CDS
AGACGCCGTACTGCTACCTT+TGG 0.431495 4.3:-26055748 None:intergenic
TTCATTTAGCTACAGGATCC+CGG 0.434371 4.3:+26055790 MS.gene47496:CDS
ATCGGAGGTTGTTTGGATTG+TGG 0.443195 4.3:-26053558 None:intergenic
TCTTCACTTCATCATTAGTC+AGG 0.447623 4.3:-26055296 None:intergenic
ACATGGAAAAGTTGGTGTAT+AGG 0.458002 4.3:+26055902 MS.gene47496:CDS
GTTAATGCGTTGCAGAAGCT+TGG 0.458197 4.3:+26054639 MS.gene47496:CDS
TCCCTCAGACTCTTCACCTC+AGG 0.461715 4.3:-26054456 None:intergenic
CAGTTGGCGATGTCCCTCCC+CGG 0.465539 4.3:-26055809 None:intergenic
AGTCCACTTCATTTAGCTAC+AGG 0.467143 4.3:+26055783 MS.gene47496:CDS
TCTTGTAGTAGTAATAGAAA+TGG 0.468798 4.3:+26054315 MS.gene47496:CDS
AAAGGTAGCAGTACGGCGTC+TGG 0.473278 4.3:+26055750 MS.gene47496:CDS
TGATCAATCTCTTTCTTCAA+AGG 0.473313 4.3:-26053944 None:intergenic
AAATCTAAACTGAGTTCTGC+AGG 0.491660 4.3:-26053485 None:intergenic
TGAGGGAAGGATTTGGTTCG+AGG 0.493121 4.3:+26054472 MS.gene47496:CDS
ATTCACAGACATGGAAAAGT+TGG 0.497674 4.3:+26055894 MS.gene47496:CDS
GAAGTCTGCTGCGGCTGAAG+TGG 0.500174 4.3:-26054570 None:intergenic
AAGAGAAGGAAGAACCTGTA+AGG 0.506152 4.3:+26054412 MS.gene47496:CDS
TCATTTAGCTACAGGATCCC+GGG 0.515125 4.3:+26055791 MS.gene47496:CDS
ATCAGCACCTAAAGAAGAGA+AGG 0.517481 4.3:+26054398 MS.gene47496:CDS
TGTAGTAGTAATAGAAATGG+AGG 0.522008 4.3:+26054318 MS.gene47496:CDS
CAGAAGCTTGGAGGTTCTCA+AGG 0.522479 4.3:+26054651 MS.gene47496:CDS
CTAGGAAACAGAGGAGATGC+TGG 0.524226 4.3:+26054592 MS.gene47496:CDS
CGAGTCGAGAGAGGAAATCA+TGG 0.525149 4.3:-26053595 None:intergenic
CTCCTGAGGTGAAGAGTCTG+AGG 0.527871 4.3:+26054454 MS.gene47496:CDS
GAGTCGTTGTATTGTTCTTG+AGG 0.536314 4.3:-26055723 None:intergenic
TGATCAGTACCACTTGCAGC+TGG 0.538762 4.3:-26055669 None:intergenic
ATACTCGGCTGCACGGTTGG+AGG 0.545035 4.3:-26054537 None:intergenic
AGTTGGCGATGTCCCTCCCC+GGG 0.547122 4.3:-26055808 None:intergenic
GCTAAATGAAGTGGACTTTG+TGG 0.551266 4.3:-26055777 None:intergenic
AATGCGTTGCAGAAGCTTGG+AGG 0.554542 4.3:+26054642 MS.gene47496:CDS
ACAGAGGAGATGCTGGTCAC+CGG 0.560535 4.3:+26054599 MS.gene47496:CDS
GAACTCTCCGCGTATGAAGT+CGG 0.562568 4.3:-26055647 None:intergenic
GCTGGTCACCGGAATTGCAC+CGG 0.565693 4.3:+26054610 MS.gene47496:CDS
TAGCTACAGGATCCCGGGGA+GGG 0.570717 4.3:+26055796 MS.gene47496:CDS
GCAACGCATTAACAAATCTC+CGG 0.573053 4.3:-26054629 None:intergenic
AGTGGCGCAGCACGCATACT+CGG 0.578170 4.3:-26054552 None:intergenic
GGAGGGACATCGCCAACTGA+AGG 0.584248 4.3:+26055813 MS.gene47496:CDS
GTCACAGGAACAGAAGAATA+CGG 0.587549 4.3:-26054363 None:intergenic
TCCATGCTCCTCTTAAACGA+CGG 0.593486 4.3:+26053665 MS.gene47496:CDS
ACAATTTGTGACTGCAGCTG+AGG 0.594577 4.3:+26054281 MS.gene47496:CDS
GCAGGAACAACACAACCCAT+TGG 0.594618 4.3:-26053467 None:intergenic
GCCAACTGAAGGTGATAGCA+TGG 0.596672 4.3:+26055824 MS.gene47496:CDS
ATGATAGAGGAAATTAGCGA+TGG 0.597212 4.3:-26053531 None:intergenic
TGACAGAAAAGGGAGGAAGA+AGG 0.597320 4.3:+26054258 MS.gene47496:intron
TCTTAATAAATTAGAAACAA+AGG 0.606924 4.3:+26054126 MS.gene47496:CDS
GATCCTGTAGCTAAATGAAG+TGG 0.608872 4.3:-26055786 None:intergenic
TCCATGCTATCACCTTCAGT+TGG 0.614177 4.3:-26055825 None:intergenic
AAAAGTCATATTCACAGACA+TGG 0.616407 4.3:+26055885 MS.gene47496:CDS
GATAATGTCACTGTTGTCAC+AGG 0.616977 4.3:-26054378 None:intergenic
AGCACGCATACTCGGCTGCA+CGG 0.618042 4.3:-26054544 None:intergenic
GTTCATCTTCGAGTCGAGAG+AGG 0.619371 4.3:-26053604 None:intergenic
GGATTGTGGAAAGATGATAG+AGG 0.619765 4.3:-26053544 None:intergenic
CAATACAACGACTCTTCCAA+AGG 0.620750 4.3:+26055732 MS.gene47496:CDS
TCCTGAGGTGAAGAGTCTGA+GGG 0.627907 4.3:+26054455 MS.gene47496:CDS
GAGGGAAGGATTTGGTTCGA+GGG 0.630808 4.3:+26054473 MS.gene47496:CDS
GAGGTGAAGAGTCTGAGGGA+AGG 0.631423 4.3:+26054459 MS.gene47496:CDS
GAGTTTGGAGAGTTTATCGG+AGG 0.638169 4.3:-26053573 None:intergenic
CGGAGAGTTCCAGCTGCAAG+TGG 0.640628 4.3:+26055660 MS.gene47496:CDS
TTTAAGAGGAGCATGGAGAG+AGG 0.641505 4.3:-26053659 None:intergenic
CTCTTCCAAAGGTAGCAGTA+CGG 0.648767 4.3:+26055743 MS.gene47496:CDS
AGGGAAGGATTTGGTTCGAG+GGG 0.651342 4.3:+26054474 MS.gene47496:CDS
AGCAGACTTCTAGGAAACAG+AGG 0.657415 4.3:+26054583 MS.gene47496:CDS
CATTTAGCTACAGGATCCCG+GGG 0.660202 4.3:+26055792 MS.gene47496:CDS
ACCGTCGTTTAAGAGGAGCA+TGG 0.663203 4.3:-26053666 None:intergenic
AGAAATACCGACTTCATACG+CGG 0.668200 4.3:+26055640 MS.gene47496:intron
ATCGAGAAACAGTTCTAACA+GGG 0.670598 4.3:+26054497 MS.gene47496:CDS
TGTTTCCTAGAAGTCTGCTG+CGG 0.688682 4.3:-26054579 None:intergenic
TTAGCTACAGGATCCCGGGG+AGG 0.690072 4.3:+26055795 MS.gene47496:CDS
TTGGTGATGACAGAAAAGGG+AGG 0.712344 4.3:+26054251 MS.gene47496:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCTATAATATTTCCAAAT+TGG - chr4.3:26054796-26054815 None:intergenic 15.0%
!! TCTTAATAAATTAGAAACAA+AGG + chr4.3:26054126-26054145 MS.gene47496:CDS 15.0%
!!! TTTTTTCTTGTCTAATTTTT+AGG - chr4.3:26054195-26054214 None:intergenic 15.0%
!! AGTTATTATCAAGTTTGAAT+TGG + chr4.3:26055585-26055604 MS.gene47496:intron 20.0%
!! ATTATAGATTAGTGAATTGA+TGG + chr4.3:26054806-26054825 MS.gene47496:intron 20.0%
!! TAATAACATTACATCTTGTT+TGG + chr4.3:26055198-26055217 MS.gene47496:intron 20.0%
!! TTGAATAAAGTTATCAACTT+TGG + chr4.3:26053780-26053799 MS.gene47496:intron 20.0%
! ACCCACATAAAAAATTCAAA+AGG - chr4.3:26053759-26053778 None:intergenic 25.0%
! ATATAGACAAGTCAATTTGT+AGG + chr4.3:26054990-26055009 MS.gene47496:intron 25.0%
! CCCACATAAAAAATTCAAAA+GGG - chr4.3:26053758-26053777 None:intergenic 25.0%
! CTTTATTAACCTTAGTTACT+AGG + chr4.3:26055375-26055394 MS.gene47496:intron 25.0%
! GTTAAGACCAAAAAACATAT+AGG + chr4.3:26055117-26055136 MS.gene47496:intron 25.0%
! TACTACTACAAGATTGAAAA+AGG - chr4.3:26054308-26054327 None:intergenic 25.0%
! TCTTGTAGTAGTAATAGAAA+TGG + chr4.3:26054315-26054334 MS.gene47496:CDS 25.0%
! TGTTTAAATTTAGATCAGCA+AGG + chr4.3:26054948-26054967 MS.gene47496:intron 25.0%
!! ACCCTTTTGAATTTTTTATG+TGG + chr4.3:26053754-26053773 MS.gene47496:intron 25.0%
!! ATGATGATGATGATATTGAA+AGG - chr4.3:26053700-26053719 None:intergenic 25.0%
!! CAATTTTGCATACATAGTTT+TGG + chr4.3:26055168-26055187 MS.gene47496:intron 25.0%
!! CCCTTTTGAATTTTTTATGT+GGG + chr4.3:26053755-26053774 MS.gene47496:intron 25.0%
!! TGATGATGATGATATTGAAA+GGG - chr4.3:26053699-26053718 None:intergenic 25.0%
!!! AAACTTTACTGTTTTTGTGA+TGG + chr4.3:26054684-26054703 MS.gene47496:intron 25.0%
!!! ATGCTAGTCTTAAAAGTTTA+AGG + chr4.3:26054844-26054863 MS.gene47496:intron 25.0%
!!! TTTGGAGTTTTTGATTCAAT+GGG + chr4.3:26053798-26053817 MS.gene47496:intron 25.0%
AAAAATCTGAGAGTTATAGC+TGG + chr4.3:26055862-26055881 MS.gene47496:CDS 30.0%
AAAAGTCATATTCACAGACA+TGG + chr4.3:26055885-26055904 MS.gene47496:CDS 30.0%
AATTGCAAAGGCAAATCATT+TGG - chr4.3:26055153-26055172 None:intergenic 30.0%
ACCAAAAACTTACTTGCAAA+TGG - chr4.3:26055323-26055342 None:intergenic 30.0%
CTATGTATGCAAAATTGCAA+AGG - chr4.3:26055165-26055184 None:intergenic 30.0%
TAATAAAGCATGCAGTTAAG+AGG - chr4.3:26055363-26055382 None:intergenic 30.0%
TCATATTGTATGTGCATTCA+TGG + chr4.3:26055524-26055543 MS.gene47496:intron 30.0%
TGATAATCCATAGTTTGGTT+GGG - chr4.3:26055070-26055089 None:intergenic 30.0%
TGATCAATCTCTTTCTTCAA+AGG - chr4.3:26053947-26053966 None:intergenic 30.0%
TGCAACAGTAATCTTAATGA+GGG + chr4.3:26054216-26054235 MS.gene47496:intron 30.0%
TGTAGTAGTAATAGAAATGG+AGG + chr4.3:26054318-26054337 MS.gene47496:CDS 30.0%
TTGCAACAGTAATCTTAATG+AGG + chr4.3:26054215-26054234 MS.gene47496:intron 30.0%
! TAAAAATTCTGTGCCAGTTT+TGG + chr4.3:26053910-26053929 MS.gene47496:CDS 30.0%
! TTTTGTGTATGCAGCAATTT+TGG + chr4.3:26053856-26053875 MS.gene47496:intron 30.0%
!! ACACTCAATTTTGACCAATT+TGG + chr4.3:26054779-26054798 MS.gene47496:intron 30.0%
!! ATGAGTTCTCTAATTTGCTT+TGG - chr4.3:26055264-26055283 None:intergenic 30.0%
!! TTGGAGTTTTTGATTCAATG+GGG + chr4.3:26053799-26053818 MS.gene47496:intron 30.0%
!!! ATGAGGGTTTTGTTTTTGTT+TGG + chr4.3:26054232-26054251 MS.gene47496:intron 30.0%
!!! CTTTGGAGTTTTTGATTCAA+TGG + chr4.3:26053797-26053816 MS.gene47496:intron 30.0%
!!! TGATAGGCCTATATGTTTTT+TGG - chr4.3:26055127-26055146 None:intergenic 30.0%
AAATCTAAACTGAGTTCTGC+AGG - chr4.3:26053488-26053507 None:intergenic 35.0%
AATCTGATCAAGGATTGTTC+CGG - chr4.3:26055039-26055058 None:intergenic 35.0%
ACAGAAGAATACGGTGAAAA+AGG - chr4.3:26054357-26054376 None:intergenic 35.0%
AGTTACTAGGTGTTTGATGA+TGG + chr4.3:26055388-26055407 MS.gene47496:intron 35.0%
ATGATAGAGGAAATTAGCGA+TGG - chr4.3:26053534-26053553 None:intergenic 35.0%
ATGGAGTTTGGAGAGTTTAT+CGG - chr4.3:26053579-26053598 None:intergenic 35.0%
ATTCACAGACATGGAAAAGT+TGG + chr4.3:26055894-26055913 MS.gene47496:CDS 35.0%
CATCAAACACCTAGTAACTA+AGG - chr4.3:26055387-26055406 None:intergenic 35.0%
CTGATAATCCATAGTTTGGT+TGG - chr4.3:26055071-26055090 None:intergenic 35.0%
GCAAATCATTTGGACTTGAT+AGG - chr4.3:26055143-26055162 None:intergenic 35.0%
GCAGCAAAGATAAGAAGAAT+TGG + chr4.3:26054017-26054036 MS.gene47496:CDS 35.0%
GGAATAAACTCTTCCAAAAC+TGG - chr4.3:26053926-26053945 None:intergenic 35.0%
GGAGGTTATTAATCTGATCA+AGG - chr4.3:26055049-26055068 None:intergenic 35.0%
TAAACAATCCCTAACTTCAC+TGG - chr4.3:26054934-26054953 None:intergenic 35.0%
TCTATCCCGAATTCAAATCT+TGG + chr4.3:26055013-26055032 MS.gene47496:intron 35.0%
TCTTATGTAGTTGTGTTGTG+AGG + chr4.3:26054749-26054768 MS.gene47496:intron 35.0%
TCTTCACTTCATCATTAGTC+AGG - chr4.3:26055299-26055318 None:intergenic 35.0%
TTAGTTCACCAGTGAAGTTA+GGG + chr4.3:26054923-26054942 MS.gene47496:intron 35.0%
TTGTAGTTCTTGGAGGTTTA+TGG + chr4.3:26055697-26055716 MS.gene47496:CDS 35.0%
TTTGATTCAATGGGGCTAAT+GGG + chr4.3:26053807-26053826 MS.gene47496:intron 35.0%
! AGGAAATTAGCGATGGTTTT+GGG - chr4.3:26053527-26053546 None:intergenic 35.0%
! AGGCATTTAGGATTGAGATT+TGG + chr4.3:26055559-26055578 MS.gene47496:intron 35.0%
! ATCGAGAAACAGTTCTAACA+GGG + chr4.3:26054497-26054516 MS.gene47496:CDS 35.0%
! GCCATTTGCAAGTAAGTTTT+TGG + chr4.3:26055319-26055338 MS.gene47496:intron 35.0%
! TTTAGTTCACCAGTGAAGTT+AGG + chr4.3:26054922-26054941 MS.gene47496:intron 35.0%
!! TGTTTGGTGATGACAGAAAA+GGG + chr4.3:26054248-26054267 MS.gene47496:intron 35.0%
!! TTGTTTGGTGATGACAGAAA+AGG + chr4.3:26054247-26054266 MS.gene47496:intron 35.0%
!! TTTTGATTCAATGGGGCTAA+TGG + chr4.3:26053806-26053825 MS.gene47496:intron 35.0%
!!! AGCAATTTTGGTTTTGAAGG+AGG + chr4.3:26053868-26053887 MS.gene47496:intron 35.0%
!!! GTTTTTTGGTCTTAACCTTC+CGG - chr4.3:26055113-26055132 None:intergenic 35.0%
!!! TGCAGCAATTTTGGTTTTGA+AGG + chr4.3:26053865-26053884 MS.gene47496:intron 35.0%
!!! TTTGGTTTTGAAGGAGGAAT+TGG + chr4.3:26053874-26053893 MS.gene47496:CDS 35.0%
AAAGAGAGCCTATTCCTTAC+AGG - chr4.3:26054429-26054448 None:intergenic 40.0%
AAGAGAAGGAAGAACCTGTA+AGG + chr4.3:26054412-26054431 MS.gene47496:CDS 40.0%
AATACGAACCGTCGTTTAAG+AGG - chr4.3:26053676-26053695 None:intergenic 40.0%
AGAGAGGAAATCATGGAGTT+TGG - chr4.3:26053591-26053610 None:intergenic 40.0%
AGAGTTTATCGGAGGTTGTT+TGG - chr4.3:26053568-26053587 None:intergenic 40.0%
AGATCAGCAAGGAGACAAAT+AGG + chr4.3:26054959-26054978 MS.gene47496:intron 40.0%
AGGAAGAACCTGTAAGGAAT+AGG + chr4.3:26054418-26054437 MS.gene47496:CDS 40.0%
AGTCCACTTCATTTAGCTAC+AGG + chr4.3:26055783-26055802 MS.gene47496:CDS 40.0%
ATAACCTCCCAACCAAACTA+TGG + chr4.3:26055060-26055079 MS.gene47496:intron 40.0%
ATCAGCACCTAAAGAAGAGA+AGG + chr4.3:26054398-26054417 MS.gene47496:CDS 40.0%
ATTCATGGTGTCTGGTTATG+AGG + chr4.3:26055539-26055558 MS.gene47496:intron 40.0%
CAATACAACGACTCTTCCAA+AGG + chr4.3:26055732-26055751 MS.gene47496:CDS 40.0%
GAGTCGTTGTATTGTTCTTG+AGG - chr4.3:26055726-26055745 None:intergenic 40.0%
GATAATGTCACTGTTGTCAC+AGG - chr4.3:26054381-26054400 None:intergenic 40.0%
GATCAGTCTGTTGTAGTTCT+TGG + chr4.3:26055687-26055706 MS.gene47496:CDS 40.0%
GATCCTGTAGCTAAATGAAG+TGG - chr4.3:26055789-26055808 None:intergenic 40.0%
GCAACGCATTAACAAATCTC+CGG - chr4.3:26054632-26054651 None:intergenic 40.0%
GGATGAGTTCTGTTCAGTTA+TGG + chr4.3:26054038-26054057 MS.gene47496:CDS 40.0%
GGATTGTGGAAAGATGATAG+AGG - chr4.3:26053547-26053566 None:intergenic 40.0%
GGGACTGATAATCCATAGTT+TGG - chr4.3:26055075-26055094 None:intergenic 40.0%
GGTTCTTCCTTCTCTTCTTT+AGG - chr4.3:26054408-26054427 None:intergenic 40.0%
GTCACAGGAACAGAAGAATA+CGG - chr4.3:26054366-26054385 None:intergenic 40.0%
TAATCCATAGTTTGGTTGGG+AGG - chr4.3:26055067-26055086 None:intergenic 40.0%
TTCATTTAGCTACAGGATCC+CGG + chr4.3:26055790-26055809 MS.gene47496:CDS 40.0%
TTCCGGCCAAGATTTGAATT+CGG - chr4.3:26055022-26055041 None:intergenic 40.0%
! AGAGAACTCATGCAAGTTGA+TGG + chr4.3:26055273-26055292 MS.gene47496:CDS 40.0%
! GAGGAAATTAGCGATGGTTT+TGG - chr4.3:26053528-26053547 None:intergenic 40.0%
! GATCGAGAAACAGTTCTAAC+AGG + chr4.3:26054496-26054515 MS.gene47496:CDS 40.0%
! GCTAAATGAAGTGGACTTTG+TGG - chr4.3:26055780-26055799 None:intergenic 40.0%
! TAGTGAATTGATGGATGTGC+TGG + chr4.3:26054815-26054834 MS.gene47496:intron 40.0%
! TGTCTGGTTATGAGGCATTT+AGG + chr4.3:26055547-26055566 MS.gene47496:intron 40.0%
!! AGAAATACCGACTTCATACG+CGG + chr4.3:26055640-26055659 MS.gene47496:intron 40.0%
!!! ATGGTTTTGGGAACGAAAGT+TGG - chr4.3:26053515-26053534 None:intergenic 40.0%
AAGAGTCTGAGGGAAGGATT+TGG + chr4.3:26054465-26054484 MS.gene47496:CDS 45.0%
ACAAATCTCCGGTGCAATTC+CGG - chr4.3:26054621-26054640 None:intergenic 45.0%
ACAATTTGTGACTGCAGCTG+AGG + chr4.3:26054281-26054300 MS.gene47496:CDS 45.0%
ATCGGAGGTTGTTTGGATTG+TGG - chr4.3:26053561-26053580 None:intergenic 45.0%
CAGTCTGTTGTAGTTCTTGG+AGG + chr4.3:26055690-26055709 MS.gene47496:CDS 45.0%
CTCTTCCAAAGGTAGCAGTA+CGG + chr4.3:26055743-26055762 MS.gene47496:CDS 45.0%
GAGTTTGGAGAGTTTATCGG+AGG - chr4.3:26053576-26053595 None:intergenic 45.0%
GTATGTGCATTCATGGTGTC+TGG + chr4.3:26055531-26055550 MS.gene47496:intron 45.0%
GTTAATGCGTTGCAGAAGCT+TGG + chr4.3:26054639-26054658 MS.gene47496:CDS 45.0%
TCATTTAGCTACAGGATCCC+GGG + chr4.3:26055791-26055810 MS.gene47496:CDS 45.0%
TCCATGCTATCACCTTCAGT+TGG - chr4.3:26055828-26055847 None:intergenic 45.0%
TCCATGCTCCTCTTAAACGA+CGG + chr4.3:26053665-26053684 MS.gene47496:CDS 45.0%
TCCCGAATTCAAATCTTGGC+CGG + chr4.3:26055017-26055036 MS.gene47496:intron 45.0%
TCCGGCCAAGATTTGAATTC+GGG - chr4.3:26055021-26055040 None:intergenic 45.0%
TCTTAACCTTCCGGTTCCTA+GGG - chr4.3:26055104-26055123 None:intergenic 45.0%
TGACAGAAAAGGGAGGAAGA+AGG + chr4.3:26054258-26054277 MS.gene47496:intron 45.0%
TGTTTCCTAGAAGTCTGCTG+CGG - chr4.3:26054582-26054601 None:intergenic 45.0%
! AGCAGACTTCTAGGAAACAG+AGG + chr4.3:26054583-26054602 MS.gene47496:CDS 45.0%
! TTTAAGAGGAGCATGGAGAG+AGG - chr4.3:26053662-26053681 None:intergenic 45.0%
!! TTGGTGATGACAGAAAAGGG+AGG + chr4.3:26054251-26054270 MS.gene47496:intron 45.0%
AATGCGTTGCAGAAGCTTGG+AGG + chr4.3:26054642-26054661 MS.gene47496:CDS 50.0%
ACCGTCGTTTAAGAGGAGCA+TGG - chr4.3:26053669-26053688 None:intergenic 50.0%
CAGAAGCTTGGAGGTTCTCA+AGG + chr4.3:26054651-26054670 MS.gene47496:CDS 50.0%
CATTTAGCTACAGGATCCCG+GGG + chr4.3:26055792-26055811 MS.gene47496:CDS 50.0%
CGAGTCGAGAGAGGAAATCA+TGG - chr4.3:26053598-26053617 None:intergenic 50.0%
CTAGGAAACAGAGGAGATGC+TGG + chr4.3:26054592-26054611 MS.gene47496:CDS 50.0%
GAACTCTCCGCGTATGAAGT+CGG - chr4.3:26055650-26055669 None:intergenic 50.0%
GCCAACTGAAGGTGATAGCA+TGG + chr4.3:26055824-26055843 MS.gene47496:CDS 50.0%
GTCTTAACCTTCCGGTTCCT+AGG - chr4.3:26055105-26055124 None:intergenic 50.0%
GTTCATCTTCGAGTCGAGAG+AGG - chr4.3:26053607-26053626 None:intergenic 50.0%
TATCAGTCCCTCCTTTCCCT+AGG + chr4.3:26055085-26055104 MS.gene47496:intron 50.0%
TCCTGAGGTGAAGAGTCTGA+GGG + chr4.3:26054455-26054474 MS.gene47496:CDS 50.0%
TGATCAGTACCACTTGCAGC+TGG - chr4.3:26055672-26055691 None:intergenic 50.0%
! AGGGAAGGATTTGGTTCGAG+GGG + chr4.3:26054474-26054493 MS.gene47496:CDS 50.0%
! GAGGGAAGGATTTGGTTCGA+GGG + chr4.3:26054473-26054492 MS.gene47496:CDS 50.0%
! GCTCTCTTTTCTGACTCCTG+AGG + chr4.3:26054440-26054459 MS.gene47496:CDS 50.0%
! TGAGGGAAGGATTTGGTTCG+AGG + chr4.3:26054472-26054491 MS.gene47496:CDS 50.0%
AAAGGTAGCAGTACGGCGTC+TGG + chr4.3:26055750-26055769 MS.gene47496:CDS 55.0%
ACAGAGGAGATGCTGGTCAC+CGG + chr4.3:26054599-26054618 MS.gene47496:CDS 55.0%
ACCTTCCGGTTCCTAGGGAA+AGG - chr4.3:26055099-26055118 None:intergenic 55.0%
AGACGCCGTACTGCTACCTT+TGG - chr4.3:26055751-26055770 None:intergenic 55.0%
CTCCTGAGGTGAAGAGTCTG+AGG + chr4.3:26054454-26054473 MS.gene47496:CDS 55.0%
GAGGTGAAGAGTCTGAGGGA+AGG + chr4.3:26054459-26054478 MS.gene47496:CDS 55.0%
TCCCTCAGACTCTTCACCTC+AGG - chr4.3:26054459-26054478 None:intergenic 55.0%
TCCCTCCTTTCCCTAGGAAC+CGG + chr4.3:26055091-26055110 MS.gene47496:intron 55.0%
TCCGGTTCCTAGGGAAAGGA+GGG - chr4.3:26055095-26055114 None:intergenic 55.0%
TCCTTTCCCTAGGAACCGGA+AGG + chr4.3:26055095-26055114 MS.gene47496:intron 55.0%
TTCAGCCGCAGCAGACTTCT+AGG + chr4.3:26054574-26054593 MS.gene47496:CDS 55.0%
TTCCGGTTCCTAGGGAAAGG+AGG - chr4.3:26055096-26055115 None:intergenic 55.0%
AGCACGCATACTCGGCTGCA+CGG - chr4.3:26054547-26054566 None:intergenic 60.0%
AGTGGCGCAGCACGCATACT+CGG - chr4.3:26054555-26054574 None:intergenic 60.0%
ATACTCGGCTGCACGGTTGG+AGG - chr4.3:26054540-26054559 None:intergenic 60.0%
CGGAGAGTTCCAGCTGCAAG+TGG + chr4.3:26055660-26055679 MS.gene47496:CDS 60.0%
GAAGTCTGCTGCGGCTGAAG+TGG - chr4.3:26054573-26054592 None:intergenic 60.0%
GCTGGTCACCGGAATTGCAC+CGG + chr4.3:26054610-26054629 MS.gene47496:CDS 60.0%
GGAGGGACATCGCCAACTGA+AGG + chr4.3:26055813-26055832 MS.gene47496:CDS 60.0%
TAGCTACAGGATCCCGGGGA+GGG + chr4.3:26055796-26055815 MS.gene47496:CDS 60.0%
TTAGCTACAGGATCCCGGGG+AGG + chr4.3:26055795-26055814 MS.gene47496:CDS 60.0%
AGTTGGCGATGTCCCTCCCC+GGG - chr4.3:26055811-26055830 None:intergenic 65.0%
CAGTTGGCGATGTCCCTCCC+CGG - chr4.3:26055812-26055831 None:intergenic 65.0%
CGCATACTCGGCTGCACGGT+TGG - chr4.3:26054543-26054562 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 26053470 26055923 26053470 ID=MS.gene47496
chr4.3 mRNA 26053470 26055923 26053470 ID=MS.gene47496.t1;Parent=MS.gene47496
chr4.3 exon 26053470 26053686 26053470 ID=MS.gene47496.t1.exon1;Parent=MS.gene47496.t1
chr4.3 CDS 26053470 26053686 26053470 ID=cds.MS.gene47496.t1;Parent=MS.gene47496.t1
chr4.3 exon 26053870 26054147 26053870 ID=MS.gene47496.t1.exon2;Parent=MS.gene47496.t1
chr4.3 CDS 26053870 26054147 26053870 ID=cds.MS.gene47496.t1;Parent=MS.gene47496.t1
chr4.3 exon 26054264 26054672 26054264 ID=MS.gene47496.t1.exon3;Parent=MS.gene47496.t1
chr4.3 CDS 26054264 26054672 26054264 ID=cds.MS.gene47496.t1;Parent=MS.gene47496.t1
chr4.3 exon 26055253 26055329 26055253 ID=MS.gene47496.t1.exon4;Parent=MS.gene47496.t1
chr4.3 CDS 26055253 26055329 26055253 ID=cds.MS.gene47496.t1;Parent=MS.gene47496.t1
chr4.3 exon 26055642 26055923 26055642 ID=MS.gene47496.t1.exon5;Parent=MS.gene47496.t1
chr4.3 CDS 26055642 26055923 26055642 ID=cds.MS.gene47496.t1;Parent=MS.gene47496.t1
Gene Sequence

>MS.gene47496

ATGGGTTGTGTTGTTCCTGCAGAACTCAGTTTAGATTTAAGACCAACTTTCGTTCCCAAAACCATCGCTAATTTCCTCTATCATCTTTCCACAATCCAAACAACCTCCGATAAACTCTCCAAACTCCATGATTTCCTCTCTCGACTCGAAGATGAACTCAATAAGATCGATGCTTTCAAACGTGAACTACCTCTCTCCATGCTCCTCTTAAACGACGGTTCGTATTCCCTTTCAATATCATCATCATCATCATCATAATCTTCGTTTAATTCAATTTTTATGATACCCTTTTGAATTTTTTATGTGGGTTTTGAATAAAGTTATCAACTTTGGAGTTTTTGATTCAATGGGGCTAATGGGTTTGTTTTGTTCTTTTGTTTTTGTGTTTTTGTGTATGCAGCAATTTTGGTTTTGAAGGAGGAATTGGAAAAATGTAGAAGTAAAAATTCTGTGCCAGTTTTGGAAGAGTTTATTCCTTTGAAGAAAGAGATTGATCAGAGTGAAGAGAATAATAATAATGATAGAGACAAGAACAACAACAATGAATGCAGCAAAGATAAGAAGAATTGGATGAGTTCTGTTCAGTTATGGAATAACAACACAACAACTTCTAATAATAATGTCTCTGATCATCATCATAAACATAACAATCATAATCTTAATAAATTAGAAACAAAGGTACTAAAAAAAATTAACAATATTGTTTATTCATTTAGATTAATCCTAAAAATTAGACAAGAAAAAATTGCAACAGTAATCTTAATGAGGGTTTTGTTTTTGTTTGGTGATGACAGAAAAGGGAGGAAGAAGGACAATTTGTGACTGCAGCTGAGGACCTTTTTCAATCTTGTAGTAGTAATAGAAATGGAGGAAGTGCTTTTATGCCTTTTTCACCGTATTCTTCTGTTCCTGTGACAACAGTGACATTATCAGCACCTAAAGAAGAGAAGGAAGAACCTGTAAGGAATAGGCTCTCTTTTCTGACTCCTGAGGTGAAGAGTCTGAGGGAAGGATTTGGTTCGAGGGGATCGAGAAACAGTTCTAACAGGGCAGTTTCGTCGTCGTCTCCTCCAACCGTGCAGCCGAGTATGCGTGCTGCGCCACTTCAGCCGCAGCAGACTTCTAGGAAACAGAGGAGATGCTGGTCACCGGAATTGCACCGGAGATTTGTTAATGCGTTGCAGAAGCTTGGAGGTTCTCAAGGTATGAATTTGAAACTTTACTGTTTTTGTGATGGAGCATATATGTTATTAAATTAGAAATGTACATATATTTAATATCTTATGTAGTTGTGTTGTGAGGTTTCAAAACACTCAATTTTGACCAATTTGGAAATATTATAGATTAGTGAATTGATGGATGTGCTGGAACTGAATGCTAGTCTTAAAAGTTTAAGGATTTGATGCTTGAAGTTGTGTTGTTGTGAAATTTTAAAATAATATGTTTGTTCTGTTTAGTTCACCAGTGAAGTTAGGGATTGTTTAAATTTAGATCAGCAAGGAGACAAATAGGAGTGTTATATATAGACAAGTCAATTTGTAGGTCTATCCCGAATTCAAATCTTGGCCGGAACAATCCTTGATCAGATTAATAACCTCCCAACCAAACTATGGATTATCAGTCCCTCCTTTCCCTAGGAACCGGAAGGTTAAGACCAAAAAACATATAGGCCTATCAAGTCCAAATGATTTGCCTTTGCAATTTTGCATACATAGTTTTGGTATGCTGTAATAACATTACATCTTGTTTGGTTCATTTGTCTAATTAACTGTTTTAACTGCAGCAGCAACTCCAAAGCAAATTAGAGAACTCATGCAAGTTGATGGCCTGACTAATGATGAAGTGAAGAGCCATTTGCAAGTAAGTTTTTGGTATTCTTTTAATTTTTCTCCTCTTAACTGCATGCTTTATTAACCTTAGTTACTAGGTGTTTGATGATGGTTATGATATAGTTAATTTAATACAGTATTAATTATATTATGTTGCTATTGAAGTATCGTCAATCACAGATATAAACGATGTATACTAGATGATATTTATGATGATGATGAGTATCATATTGTATGTGCATTCATGGTGTCTGGTTATGAGGCATTTAGGATTGAGATTTGGTTGAGTTATTATCAAGTTTGAATTGGATGTTTGACATATGATTCTTGATTATTATTGCAGAAATACCGACTTCATACGCGGAGAGTTCCAGCTGCAAGTGGTACTGATCAGTCTGTTGTAGTTCTTGGAGGTTTATGGATGCCTCAAGAACAATACAACGACTCTTCCAAAGGTAGCAGTACGGCGTCTGGTTCTCCACAAAGTCCACTTCATTTAGCTACAGGATCCCGGGGAGGGACATCGCCAACTGAAGGTGATAGCATGGACGATGACGATGATGAAAAATCTGAGAGTTATAGCTGGAAAAGTCATATTCACAGACATGGAAAAGTTGGTGTATAG
Protein sequence

>MS.gene47496.t1

MGCVVPAELSLDLRPTFVPKTIANFLYHLSTIQTTSDKLSKLHDFLSRLEDELNKIDAFKRELPLSMLLLNDAILVLKEELEKCRSKNSVPVLEEFIPLKKEIDQSEENNNNDRDKNNNNECSKDKKNWMSSVQLWNNNTTTSNNNVSDHHHKHNNHNLNKLETKKREEEGQFVTAAEDLFQSCSSNRNGGSAFMPFSPYSSVPVTTVTLSAPKEEKEEPVRNRLSFLTPEVKSLREGFGSRGSRNSSNRAVSSSSPPTVQPSMRAAPLQPQQTSRKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAASGTDQSVVVLGGLWMPQEQYNDSSKGSSTASGSPQSPLHLATGSRGGTSPTEGDSMDDDDDEKSESYSWKSHIHRHGKVGV