Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47535.t1 | XP_003608130.2 | 92.6 | 272 | 16 | 1 | 1 | 268 | 1 | 272 | 4.40E-132 | 480.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47535.t1 | Q9S7Y1 | 38.8 | 178 | 106 | 3 | 57 | 233 | 160 | 335 | 3.4e-24 | 113.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47535.t1 | G7JPQ2 | 92.6 | 272 | 16 | 1 | 1 | 268 | 1 | 272 | 3.2e-132 | 480.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene47535.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47535.t1 | MTR_4g087920 | 92.278 | 259 | 16 | 1 | 1 | 255 | 1 | 259 | 5.76e-166 | 460 |
| MS.gene47535.t1 | MTR_2g015890 | 55.118 | 254 | 102 | 4 | 19 | 268 | 11 | 256 | 5.60e-83 | 249 |
| MS.gene47535.t1 | MTR_2g015890 | 47.244 | 254 | 82 | 5 | 19 | 268 | 11 | 216 | 1.63e-59 | 188 |
| MS.gene47535.t1 | MTR_2g015890 | 58.182 | 165 | 62 | 2 | 104 | 268 | 1 | 158 | 5.80e-59 | 185 |
| MS.gene47535.t1 | MTR_2g091190 | 46.190 | 210 | 108 | 4 | 30 | 238 | 21 | 226 | 1.34e-46 | 156 |
| MS.gene47535.t1 | MTR_4g079760 | 38.610 | 259 | 150 | 7 | 1 | 258 | 1 | 251 | 1.22e-40 | 141 |
| MS.gene47535.t1 | MTR_2g015890 | 46.061 | 165 | 42 | 3 | 104 | 268 | 1 | 118 | 1.53e-35 | 124 |
| MS.gene47535.t1 | MTR_3g070970 | 34.673 | 199 | 110 | 7 | 65 | 253 | 67 | 255 | 1.03e-28 | 110 |
| MS.gene47535.t1 | MTR_1g093750 | 41.667 | 180 | 94 | 5 | 57 | 232 | 144 | 316 | 3.19e-25 | 102 |
| MS.gene47535.t1 | MTR_5g032375 | 31.737 | 167 | 97 | 4 | 69 | 223 | 43 | 204 | 2.02e-15 | 73.6 |
| MS.gene47535.t1 | MTR_5g066080 | 33.000 | 200 | 91 | 4 | 64 | 230 | 30 | 219 | 1.72e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47535.t1 | AT3G56770 | 39.205 | 176 | 98 | 5 | 63 | 236 | 37 | 205 | 6.27e-30 | 112 |
| MS.gene47535.t1 | AT2G40200 | 41.667 | 132 | 73 | 2 | 73 | 201 | 65 | 195 | 2.55e-27 | 106 |
| MS.gene47535.t1 | AT1G68810 | 34.884 | 258 | 152 | 8 | 5 | 251 | 98 | 350 | 3.16e-24 | 100 |
| MS.gene47535.t1 | AT2G41130 | 38.068 | 176 | 101 | 4 | 63 | 236 | 59 | 228 | 5.00e-24 | 97.8 |
| MS.gene47535.t1 | AT3G25710 | 32.642 | 193 | 110 | 4 | 27 | 202 | 72 | 261 | 1.15e-20 | 90.1 |
Find 52 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTCTTCTCCTCTTATT+TGG | 0.100613 | 4.3:+25623557 | None:intergenic |
| ACCACCACATTCATTGGTTT+TGG | 0.275049 | 4.3:-25626811 | MS.gene47535:CDS |
| GAACCATATGATACTAAATT+AGG | 0.319188 | 4.3:-25623863 | MS.gene47535:CDS |
| GTCATCACCACCACATTCAT+TGG | 0.344688 | 4.3:-25626817 | MS.gene47535:CDS |
| AGAAGAAGGGAGAGAATAAA+TGG | 0.348920 | 4.3:-25626675 | MS.gene47535:CDS |
| TATGATACTAAATTAGGATA+TGG | 0.351083 | 4.3:-25623857 | MS.gene47535:CDS |
| AATCAAACTTTGGATAACTT+TGG | 0.378387 | 4.3:-25626855 | MS.gene47535:CDS |
| TTCACTTCATCAACTTCTGT+TGG | 0.395317 | 4.3:+25623890 | None:intergenic |
| TATCCTAATTTAGTATCATA+TGG | 0.402521 | 4.3:+25623860 | None:intergenic |
| TTGAGGTCACATAGTATCTC+AGG | 0.408328 | 4.3:+25623794 | None:intergenic |
| GATAACTTTGGAGCTTCAAA+TGG | 0.416443 | 4.3:-25626843 | MS.gene47535:CDS |
| GAACTTCATATCCAAATAAG+AGG | 0.441039 | 4.3:-25623568 | MS.gene47535:CDS |
| GGGAAGCAGAGAGGAGAAGA+AGG | 0.448212 | 4.3:-25626689 | MS.gene47535:CDS |
| TTCTCCTCTCTGCTTCCCTA+TGG | 0.451668 | 4.3:+25626694 | None:intergenic |
| TTGTGTTTACATGTTGTAAA+GGG | 0.470424 | 4.3:-25623694 | MS.gene47535:CDS |
| ACTGGATTCTGTGCTGGAAA+AGG | 0.471850 | 4.3:-25623618 | MS.gene47535:CDS |
| CAAGGCACTGGATTCTGTGC+TGG | 0.480944 | 4.3:-25623624 | MS.gene47535:CDS |
| TAGCTTCTTTGAAGAACCAT+AGG | 0.484232 | 4.3:-25626710 | MS.gene47535:CDS |
| GAGTTTGTTCAATCAAACTT+TGG | 0.484332 | 4.3:-25626865 | MS.gene47535:CDS |
| GGAAGCAGAGAGGAGAAGAA+GGG | 0.491306 | 4.3:-25626688 | MS.gene47535:CDS |
| GGAAAAGGCTTCTAACTCAA+TGG | 0.501654 | 4.3:-25623603 | MS.gene47535:CDS |
| TGTAGCTTCCACTCATCAAA+AGG | 0.507874 | 4.3:-25626628 | MS.gene47535:intron |
| TTTGTGTTTACATGTTGTAA+AGG | 0.510071 | 4.3:-25623695 | MS.gene47535:CDS |
| AAATGTCAACATTGGAAAGC+AGG | 0.511259 | 4.3:-25623730 | MS.gene47535:CDS |
| CATGCATCTTGTTCATGCTA+AGG | 0.515195 | 4.3:-25623503 | None:intergenic |
| GAATGAGAAGGAAAAGGTGG+TGG | 0.516295 | 4.3:-25626787 | MS.gene47535:CDS |
| AAATGTTGTTCACAAGGCAC+TGG | 0.530660 | 4.3:-25623636 | MS.gene47535:CDS |
| GATGATGTTTCTGAGGTGAA+AGG | 0.532394 | 4.3:-25626735 | MS.gene47535:CDS |
| TTTGGAGAATGAGAAGGAAA+AGG | 0.540805 | 4.3:-25626793 | MS.gene47535:CDS |
| GAAGGCAGAAATGTCAACAT+TGG | 0.560990 | 4.3:-25623738 | MS.gene47535:CDS |
| ATGCATCTTGTTCATGCTAA+GGG | 0.564588 | 4.3:-25623502 | None:intergenic |
| GAGAGAATAAATGGTCACCT+TGG | 0.565872 | 4.3:-25626666 | MS.gene47535:CDS |
| GGAGTGCCCTGTTACTGAAA+AGG | 0.568614 | 4.3:-25626766 | MS.gene47535:CDS |
| GGAATTAAAGAAGAATGCAA+TGG | 0.577626 | 4.3:-25623936 | MS.gene47535:CDS |
| AGCTTCTTTGAAGAACCATA+GGG | 0.592888 | 4.3:-25626709 | MS.gene47535:CDS |
| AGATGCATGGCTGCATGAAG+AGG | 0.593504 | 4.3:+25623517 | None:intergenic |
| AATCACTTCAGCAAGTATTG+TGG | 0.602708 | 4.3:+25623970 | None:intergenic |
| GGAGAATGAGAAGGAAAAGG+TGG | 0.603497 | 4.3:-25626790 | MS.gene47535:CDS |
| TGCCCTGTTACTGAAAAGGT+TGG | 0.605529 | 4.3:-25626762 | MS.gene47535:CDS |
| TATTGCAAATGTTGTTCACA+AGG | 0.609473 | 4.3:-25623642 | MS.gene47535:CDS |
| CAAGACCACGTAATGTTCCA+AGG | 0.609560 | 4.3:+25626649 | None:intergenic |
| TGAAGTGATTAGTCAAGTGA+AGG | 0.620505 | 4.3:-25623957 | MS.gene47535:CDS |
| TTCTCCAAAACCAATGAATG+TGG | 0.622319 | 4.3:+25626807 | None:intergenic |
| AGGTTGGTAATCACAGCAGA+TGG | 0.628119 | 4.3:+25623814 | None:intergenic |
| CTTAGCATGAACAAGATGCA+TGG | 0.629347 | 4.3:+25623504 | None:intergenic |
| ACTTCAACTTCAACTAGTGA+AGG | 0.632952 | 4.3:-25623756 | MS.gene47535:CDS |
| AATGCAATGGAAGCAAGCAA+AGG | 0.642370 | 4.3:-25623923 | MS.gene47535:CDS |
| TGGTAAAGATGATGTTTCTG+AGG | 0.646156 | 4.3:-25626742 | MS.gene47535:CDS |
| GGTCACATAGTATCTCAGGT+TGG | 0.666963 | 4.3:+25623798 | None:intergenic |
| TCCAAAACCAATGAATGTGG+TGG | 0.695002 | 4.3:+25626810 | None:intergenic |
| GGTCACCTTGGAACATTACG+TGG | 0.700048 | 4.3:-25626654 | MS.gene47535:CDS |
| AGAACCATAGGGAAGCAGAG+AGG | 0.739044 | 4.3:-25626698 | MS.gene47535:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCGTAAAAAAAATT+CGG | - | chr4.3:25625750-25625769 | MS.gene47535:intron | 10.0% |
| !! | CATTATTGTAATTAAATTAA+GGG | - | chr4.3:25624736-25624755 | MS.gene47535:intron | 10.0% |
| !! | TTAAAAGTCAAAAAAAATTT+CGG | - | chr4.3:25625689-25625708 | MS.gene47535:intron | 10.0% |
| !!! | AAAACTGAATTTTTTTTTTA+AGG | - | chr4.3:25625776-25625795 | MS.gene47535:intron | 10.0% |
| !!! | AATTAAAACTGAAAAATTTT+CGG | - | chr4.3:25625726-25625745 | MS.gene47535:intron | 10.0% |
| !!! | AATTATATATTTTTTTTGGA+AGG | + | chr4.3:25626350-25626369 | None:intergenic | 10.0% |
| !!! | ATTATATATTTTTTTTGGAA+GGG | + | chr4.3:25626349-25626368 | None:intergenic | 10.0% |
| !!! | ATTGTTAATCATTTAAAATT+TGG | - | chr4.3:25625508-25625527 | MS.gene47535:intron | 10.0% |
| !!! | ATTGTTAATCATTTAAAATT+TGG | + | chr4.3:25625527-25625508 | None:intergenic | 10.0% |
| !!! | TAAAGTATTTTTTATTCTAA+AGG | + | chr4.3:25624557-25624576 | None:intergenic | 10.0% |
| !!! | TGATAATTTTAAAAGAAAAA+TGG | - | chr4.3:25624662-25624681 | MS.gene47535:intron | 10.0% |
| !!! | TTGAAAAAAAAATTTTTTGA+AGG | + | chr4.3:25625624-25625643 | None:intergenic | 10.0% |
| !! | AAAAATCGTAAAAAAAATTC+GGG | - | chr4.3:25625751-25625770 | MS.gene47535:intron | 15.0% |
| !! | AAGATTATGAACAAAATATT+CGG | - | chr4.3:25623921-25623940 | MS.gene47535:CDS | 15.0% |
| !! | ATTAAGCCTAATATTAATAT+AGG | + | chr4.3:25625409-25625428 | None:intergenic | 15.0% |
| !! | ATTATAATATTAAGGCTTAA+TGG | + | chr4.3:25626002-25626021 | None:intergenic | 15.0% |
| !! | GACTAAATTAAGTTTAAATA+TGG | - | chr4.3:25626121-25626140 | MS.gene47535:intron | 15.0% |
| !! | GCATTATTGTAATTAAATTA+AGG | - | chr4.3:25624735-25624754 | MS.gene47535:intron | 15.0% |
| !! | TAAATAAGCATTAAGAAATA+AGG | + | chr4.3:25624611-25624630 | None:intergenic | 15.0% |
| !!! | ATTAAAACTGAAAAATTTTC+GGG | - | chr4.3:25625727-25625746 | MS.gene47535:intron | 15.0% |
| !!! | TCATGATATTAGTATTTTTA+TGG | - | chr4.3:25624893-25624912 | MS.gene47535:intron | 15.0% |
| !!! | TTCTAATTGTAAAATTTGTT+TGG | - | chr4.3:25623874-25623893 | MS.gene47535:CDS | 15.0% |
| !! | AAAAATAAACACAAACCAAA+AGG | + | chr4.3:25624397-25624416 | None:intergenic | 20.0% |
| !! | AAACAAAAAAAAAATAAGCC+AGG | - | chr4.3:25625805-25625824 | MS.gene47535:intron | 20.0% |
| !! | AACAAAAAAAAAATAAGCCA+GGG | - | chr4.3:25625806-25625825 | MS.gene47535:intron | 20.0% |
| !! | AAGGGAATTAATAGATTTAA+TGG | - | chr4.3:25624158-25624177 | MS.gene47535:intron | 20.0% |
| !! | AGTACTCCTATATTAATATT+AGG | - | chr4.3:25625400-25625419 | MS.gene47535:intron | 20.0% |
| !! | ATTCAATATCAAAATTCTGA+TGG | + | chr4.3:25624345-25624364 | None:intergenic | 20.0% |
| !! | ATTTAATGGAAAGTTGAAAT+TGG | - | chr4.3:25624172-25624191 | MS.gene47535:intron | 20.0% |
| !! | CAAATATTATTTCCTTGATT+AGG | - | chr4.3:25624982-25625001 | MS.gene47535:intron | 20.0% |
| !! | GAAGGATGATTATAATATTA+AGG | + | chr4.3:25626010-25626029 | None:intergenic | 20.0% |
| !! | TATCCTAATTTAGTATCATA+TGG | + | chr4.3:25626563-25626582 | None:intergenic | 20.0% |
| !! | TATGATACTAAATTAGGATA+TGG | - | chr4.3:25626563-25626582 | MS.gene47535:intron | 20.0% |
| !! | TTAAATGATTAACAATTGCA+GGG | - | chr4.3:25625906-25625925 | MS.gene47535:intron | 20.0% |
| !! | TTAAATGATTAACAATTGCA+GGG | + | chr4.3:25625925-25625906 | None:intergenic | 20.0% |
| !! | TTTAAATGATTAACAATTGC+AGG | - | chr4.3:25625905-25625924 | MS.gene47535:intron | 20.0% |
| !! | TTTAAATGATTAACAATTGC+AGG | + | chr4.3:25625924-25625905 | None:intergenic | 20.0% |
| !! | TTTAATGGAAAGTTGAAATT+GGG | - | chr4.3:25624173-25624192 | MS.gene47535:intron | 20.0% |
| !!! | TTGTTGTCTTATTTCTATAA+TGG | - | chr4.3:25625273-25625292 | MS.gene47535:intron | 20.0% |
| !!! | TTTTTTACGGTAATAATACA+TGG | - | chr4.3:25626194-25626213 | MS.gene47535:intron | 20.0% |
| ! | AACAAATAAAGATAAGATGG+CGG | + | chr4.3:25625258-25625277 | None:intergenic | 25.0% |
| ! | AAGAAATAAGGAAATGCTAA+GGG | + | chr4.3:25624599-25624618 | None:intergenic | 25.0% |
| ! | AATCAAACTTTGGATAACTT+TGG | - | chr4.3:25623565-25623584 | MS.gene47535:CDS | 25.0% |
| ! | ACAAAAAAAAAATAAGCCAG+GGG | - | chr4.3:25625807-25625826 | MS.gene47535:intron | 25.0% |
| ! | ACTTCAAATTTCAAAACTTG+TGG | + | chr4.3:25624715-25624734 | None:intergenic | 25.0% |
| ! | AGGTGAGAATCAAATATAAT+TGG | - | chr4.3:25624275-25624294 | MS.gene47535:intron | 25.0% |
| ! | ATTCAAGACAATGTTATCAA+AGG | - | chr4.3:25626084-25626103 | MS.gene47535:intron | 25.0% |
| ! | GAACCATATGATACTAAATT+AGG | - | chr4.3:25626557-25626576 | MS.gene47535:intron | 25.0% |
| ! | GACAACAAATAAAGATAAGA+TGG | + | chr4.3:25625261-25625280 | None:intergenic | 25.0% |
| ! | GGTGAGAATCAAATATAATT+GGG | - | chr4.3:25624276-25624295 | MS.gene47535:intron | 25.0% |
| ! | TAAATGATTAACAATTGCAG+GGG | - | chr4.3:25625907-25625926 | MS.gene47535:intron | 25.0% |
| ! | TAAATGATTAACAATTGCAG+GGG | + | chr4.3:25625926-25625907 | None:intergenic | 25.0% |
| ! | TAAGAAATAAGGAAATGCTA+AGG | + | chr4.3:25624600-25624619 | None:intergenic | 25.0% |
| ! | TAATAAATCAACTCAGTTGT+TGG | - | chr4.3:25626038-25626057 | MS.gene47535:intron | 25.0% |
| ! | TAATGAATGATTTCCAGTTT+GGG | + | chr4.3:25624935-25624954 | None:intergenic | 25.0% |
| ! | TTAATGAATGATTTCCAGTT+TGG | + | chr4.3:25624936-25624955 | None:intergenic | 25.0% |
| ! | TTGTGTTTACATGTTGTAAA+GGG | - | chr4.3:25626726-25626745 | MS.gene47535:CDS | 25.0% |
| ! | TTTGTGTTTACATGTTGTAA+AGG | - | chr4.3:25626725-25626744 | MS.gene47535:CDS | 25.0% |
| !! | AAGGAAAAAAAAATTAGCCT+AGG | + | chr4.3:25625605-25625624 | None:intergenic | 25.0% |
| !! | AGGAAAAAAAAATTAGCCTA+GGG | + | chr4.3:25625604-25625623 | None:intergenic | 25.0% |
| !! | AGTTTAAGTTTGAACAAAGA+TGG | - | chr4.3:25624232-25624251 | MS.gene47535:intron | 25.0% |
| !! | ATATACTTTTGTTCATGTCA+TGG | + | chr4.3:25625011-25625030 | None:intergenic | 25.0% |
| !! | ATGGTTCATTACATTTTAGA+TGG | - | chr4.3:25626421-25626440 | MS.gene47535:intron | 25.0% |
| !! | TATTTCTATAATGGTGATGT+GGG | - | chr4.3:25625282-25625301 | MS.gene47535:intron | 25.0% |
| !! | TTTTATGGTTTCTTCTTCTA+TGG | - | chr4.3:25624908-25624927 | MS.gene47535:intron | 25.0% |
| !!! | ACAACTGAGTTGATTTATTA+AGG | + | chr4.3:25626038-25626057 | None:intergenic | 25.0% |
| !!! | ATATTAATATAGGAGTACTG+AGG | + | chr4.3:25625399-25625418 | None:intergenic | 25.0% |
| !!! | ATGTGTTGAATTTGATTTTG+TGG | - | chr4.3:25626394-25626413 | MS.gene47535:intron | 25.0% |
| !!! | CAGATATAGTTTTGGTTTTT+AGG | - | chr4.3:25624203-25624222 | MS.gene47535:intron | 25.0% |
| !!! | TGTGTTGAATTTGATTTTGT+GGG | - | chr4.3:25626395-25626414 | MS.gene47535:intron | 25.0% |
| !!! | TGTTTTTACCAATATCCTTT+TGG | - | chr4.3:25624379-25624398 | MS.gene47535:intron | 25.0% |
| !!! | TTATTTCTATAATGGTGATG+TGG | - | chr4.3:25625281-25625300 | MS.gene47535:intron | 25.0% |
| !!! | TTTTTTCTCTTTACAAGTCT+TGG | + | chr4.3:25624521-25624540 | None:intergenic | 25.0% |
| AAATATAATTGGGTACCTGA+GGG | - | chr4.3:25624286-25624305 | MS.gene47535:intron | 30.0% | |
| AACACAAACCAAAAGGATAT+TGG | + | chr4.3:25624390-25624409 | None:intergenic | 30.0% | |
| AATAGGCAGCGTTTAAAAAT+TGG | - | chr4.3:25625448-25625467 | MS.gene47535:intron | 30.0% | |
| ACACTTCACAATCAAATTGA+AGG | - | chr4.3:25623979-25623998 | MS.gene47535:CDS | 30.0% | |
| ACGATATTGACACATAGATT+TGG | + | chr4.3:25624054-25624073 | None:intergenic | 30.0% | |
| ACTAATCACGTTCAAATATG+TGG | - | chr4.3:25626250-25626269 | MS.gene47535:intron | 30.0% | |
| CAAAAAGAACAATGAAAGCA+AGG | + | chr4.3:25623834-25623853 | None:intergenic | 30.0% | |
| GAACTTCATATCCAAATAAG+AGG | - | chr4.3:25626852-25626871 | MS.gene47535:CDS | 30.0% | |
| GGAATTAAAGAAGAATGCAA+TGG | - | chr4.3:25626484-25626503 | MS.gene47535:intron | 30.0% | |
| GTGCAATTATATATCCCATA+TGG | - | chr4.3:25624856-25624875 | MS.gene47535:intron | 30.0% | |
| TATTGCAAATGTTGTTCACA+AGG | - | chr4.3:25626778-25626797 | MS.gene47535:CDS | 30.0% | |
| TCAATTTGATTGTGAAGTGT+CGG | + | chr4.3:25623979-25623998 | None:intergenic | 30.0% | |
| TGATTTATTAAGGTGGATGA+AGG | + | chr4.3:25626028-25626047 | None:intergenic | 30.0% | |
| TTCTTGCATAAAACATACGT+AGG | - | chr4.3:25623944-25623963 | MS.gene47535:CDS | 30.0% | |
| TTTGGAAGGGAAAAAATTGT+TGG | + | chr4.3:25626336-25626355 | None:intergenic | 30.0% | |
| ! | AAATTATCAAAGAGCGTGAA+AGG | + | chr4.3:25624651-25624670 | None:intergenic | 30.0% |
| ! | AATTATCAAAGAGCGTGAAA+GGG | + | chr4.3:25624650-25624669 | None:intergenic | 30.0% |
| ! | ATTTCTATAATGGTGATGTG+GGG | - | chr4.3:25625283-25625302 | MS.gene47535:intron | 30.0% |
| ! | GAGTTTGTTCAATCAAACTT+TGG | - | chr4.3:25623555-25623574 | MS.gene47535:CDS | 30.0% |
| ! | GGAAAAAAAAATTAGCCTAG+GGG | + | chr4.3:25625603-25625622 | None:intergenic | 30.0% |
| ! | TATTGACAATATTTTCCCTC+AGG | + | chr4.3:25624304-25624323 | None:intergenic | 30.0% |
| !! | AATTTGATTTTGTGGGTCAA+TGG | - | chr4.3:25626402-25626421 | MS.gene47535:intron | 30.0% |
| !! | ACACTAATGTCAATTTTGAC+AGG | - | chr4.3:25625041-25625060 | MS.gene47535:intron | 30.0% |
| !! | ACTGAGTTGATTTATTAAGG+TGG | + | chr4.3:25626035-25626054 | None:intergenic | 30.0% |
| !! | CACTAATGTCAATTTTGACA+GGG | - | chr4.3:25625042-25625061 | MS.gene47535:intron | 30.0% |
| !!! | AGGGAATAGTTTTAATGTTG+AGG | - | chr4.3:25626745-25626764 | MS.gene47535:CDS | 30.0% |
| !!! | ATTGCTTTCAAGTTTTGTTG+TGG | - | chr4.3:25625145-25625164 | MS.gene47535:intron | 30.0% |
| !!! | GTGCATTAATTGCTTTTTTG+AGG | + | chr4.3:25626646-25626665 | None:intergenic | 30.0% |
| AAATGTCAACATTGGAAAGC+AGG | - | chr4.3:25626690-25626709 | MS.gene47535:CDS | 35.0% | |
| AAGAACAATGAAAGCAAGGA+AGG | + | chr4.3:25623830-25623849 | None:intergenic | 35.0% | |
| AATAGGCGGCGTTTAAAAAT+TGG | + | chr4.3:25625962-25625981 | None:intergenic | 35.0% | |
| ACTTCAACTTCAACTAGTGA+AGG | - | chr4.3:25626664-25626683 | MS.gene47535:CDS | 35.0% | |
| AGAAGAAGGGAGAGAATAAA+TGG | - | chr4.3:25623745-25623764 | MS.gene47535:CDS | 35.0% | |
| AGATGGCAATACAAGCTTTA+AGG | - | chr4.3:25624249-25624268 | MS.gene47535:intron | 35.0% | |
| CAAATATAATTGGGTACCTG+AGG | - | chr4.3:25624285-25624304 | MS.gene47535:intron | 35.0% | |
| CACATTCTTCTCCTCTTATT+TGG | + | chr4.3:25626866-25626885 | None:intergenic | 35.0% | |
| CAGATTAGCAAAAATGGCAT+GGG | + | chr4.3:25625847-25625866 | None:intergenic | 35.0% | |
| CTTCACAATCAAATTGAAGG+TGG | - | chr4.3:25623982-25624001 | MS.gene47535:CDS | 35.0% | |
| GCATCATGGTTGTCATTATA+TGG | - | chr4.3:25624768-25624787 | MS.gene47535:intron | 35.0% | |
| TCTATAAAATGCATGTGCTG+TGG | - | chr4.3:25624127-25624146 | MS.gene47535:intron | 35.0% | |
| TTCACTTCATCAACTTCTGT+TGG | + | chr4.3:25626533-25626552 | None:intergenic | 35.0% | |
| TTCTCCAAAACCAATGAATG+TGG | + | chr4.3:25623616-25623635 | None:intergenic | 35.0% | |
| TTTGGAGAATGAGAAGGAAA+AGG | - | chr4.3:25623627-25623646 | MS.gene47535:CDS | 35.0% | |
| ! | AACTCAGTTTGTTTGCCATA+TGG | + | chr4.3:25624874-25624893 | None:intergenic | 35.0% |
| ! | AAGACATACCTTTTGATGAG+TGG | + | chr4.3:25623803-25623822 | None:intergenic | 35.0% |
| ! | AATCACTTCAGCAAGTATTG+TGG | + | chr4.3:25626453-25626472 | None:intergenic | 35.0% |
| ! | ACTCAGTTTGTTTGCCATAT+GGG | + | chr4.3:25624873-25624892 | None:intergenic | 35.0% |
| ! | AGCTTCTTTGAAGAACCATA+GGG | - | chr4.3:25623711-25623730 | MS.gene47535:CDS | 35.0% |
| ! | GTGAGGAACAGATATAGTTT+TGG | - | chr4.3:25624195-25624214 | MS.gene47535:intron | 35.0% |
| ! | TACCAACCTTTTCAGTAACA+GGG | + | chr4.3:25623663-25623682 | None:intergenic | 35.0% |
| ! | TAGCTTCTTTGAAGAACCAT+AGG | - | chr4.3:25623710-25623729 | MS.gene47535:CDS | 35.0% |
| ! | TGAAGTGATTAGTCAAGTGA+AGG | - | chr4.3:25626463-25626482 | MS.gene47535:intron | 35.0% |
| ! | TGCTGATTGCTAAAGTCAAA+TGG | - | chr4.3:25624809-25624828 | MS.gene47535:intron | 35.0% |
| ! | TGGTAAAGATGATGTTTCTG+AGG | - | chr4.3:25623678-25623697 | MS.gene47535:CDS | 35.0% |
| ! | TGGTAACCATGTCTCTTTTA+GGG | - | chr4.3:25624077-25624096 | MS.gene47535:intron | 35.0% |
| ! | TTACCAACCTTTTCAGTAAC+AGG | + | chr4.3:25623664-25623683 | None:intergenic | 35.0% |
| !! | GAAGTGATTAAGTTGGTCAA+AGG | - | chr4.3:25625875-25625894 | MS.gene47535:intron | 35.0% |
| !! | GATAACTTTGGAGCTTCAAA+TGG | - | chr4.3:25623577-25623596 | MS.gene47535:CDS | 35.0% |
| !!! | AAATTAGCCTAGGGGTATTT+TGG | + | chr4.3:25625595-25625614 | None:intergenic | 35.0% |
| !!! | ATTGGTTTTGGAGAATGAGA+AGG | - | chr4.3:25623621-25623640 | MS.gene47535:CDS | 35.0% |
| !!! | GACAGGGTATTTTAACTTGA+TGG | - | chr4.3:25625058-25625077 | MS.gene47535:intron | 35.0% |
| AAATGTTGTTCACAAGGCAC+TGG | - | chr4.3:25626784-25626803 | MS.gene47535:CDS | 40.0% | |
| AAGGGATTCTGATTGCATCA+TGG | - | chr4.3:25624754-25624773 | MS.gene47535:intron | 40.0% | |
| AATGCAATGGAAGCAAGCAA+AGG | - | chr4.3:25626497-25626516 | MS.gene47535:intron | 40.0% | |
| ATCAAGCCCTAAAAGAGACA+TGG | + | chr4.3:25624086-25624105 | None:intergenic | 40.0% | |
| ATGTCATGGAGACCTAATCA+AGG | + | chr4.3:25624997-25625016 | None:intergenic | 40.0% | |
| CAGATTGGCAAAAATGGCAT+GGG | - | chr4.3:25625563-25625582 | MS.gene47535:intron | 40.0% | |
| CCAGATTAGCAAAAATGGCA+TGG | + | chr4.3:25625848-25625867 | None:intergenic | 40.0% | |
| CGTCACCAGATTAGCAAAAA+TGG | + | chr4.3:25625853-25625872 | None:intergenic | 40.0% | |
| CTATGTGTCAATATCGTGTC+TGG | - | chr4.3:25624057-25624076 | MS.gene47535:intron | 40.0% | |
| GAAGGCAGAAATGTCAACAT+TGG | - | chr4.3:25626682-25626701 | MS.gene47535:CDS | 40.0% | |
| GAATTGACCAAAATACCCCT+AGG | - | chr4.3:25625585-25625604 | MS.gene47535:intron | 40.0% | |
| GAGAGAATAAATGGTCACCT+TGG | - | chr4.3:25623754-25623773 | MS.gene47535:CDS | 40.0% | |
| GGAAAAGGCTTCTAACTCAA+TGG | - | chr4.3:25626817-25626836 | MS.gene47535:CDS | 40.0% | |
| GGAAAGAGGAAGACAACAAA+TGG | + | chr4.3:25625378-25625397 | None:intergenic | 40.0% | |
| TCCAAAACCAATGAATGTGG+TGG | + | chr4.3:25623613-25623632 | None:intergenic | 40.0% | |
| TGACGTGGAAGTGATTAAGT+TGG | - | chr4.3:25625868-25625887 | MS.gene47535:intron | 40.0% | |
| TGGAAAGTTGAAATTGGGTG+AGG | - | chr4.3:25624178-25624197 | MS.gene47535:intron | 40.0% | |
| TGTAGCTTCCACTCATCAAA+AGG | - | chr4.3:25623792-25623811 | MS.gene47535:CDS | 40.0% | |
| TGTCTTTAGTCCCTGCAAAT+AGG | - | chr4.3:25625431-25625450 | MS.gene47535:intron | 40.0% | |
| TTAAACGCTGCCTATTTGCA+GGG | + | chr4.3:25625444-25625463 | None:intergenic | 40.0% | |
| TTGAGGTCACATAGTATCTC+AGG | + | chr4.3:25626629-25626648 | None:intergenic | 40.0% | |
| TTTAAACGCTGCCTATTTGC+AGG | + | chr4.3:25625445-25625464 | None:intergenic | 40.0% | |
| ! | CTGGTAACCATGTCTCTTTT+AGG | - | chr4.3:25624076-25624095 | MS.gene47535:intron | 40.0% |
| ! | GTGATTAGTCATGTGTCACA+CGG | + | chr4.3:25626239-25626258 | None:intergenic | 40.0% |
| ! | TGATTAGTCATGTGTCACAC+GGG | + | chr4.3:25626238-25626257 | None:intergenic | 40.0% |
| !! | CAATACAAGCTTTAAGGCAG+AGG | - | chr4.3:25624255-25624274 | MS.gene47535:intron | 40.0% |
| !! | GATGATGTTTCTGAGGTGAA+AGG | - | chr4.3:25623685-25623704 | MS.gene47535:CDS | 40.0% |
| !! | GCAGTGATTAAGTTGGTCAA+AGG | + | chr4.3:25625535-25625554 | None:intergenic | 40.0% |
| !! | TATAGGAGTACTGAGGAAAG+AGG | + | chr4.3:25625392-25625411 | None:intergenic | 40.0% |
| !! | TTTTTGCTAATCTGGTGACG+TGG | - | chr4.3:25625853-25625872 | MS.gene47535:intron | 40.0% |
| !!! | ACCACCACATTCATTGGTTT+TGG | - | chr4.3:25623609-25623628 | MS.gene47535:CDS | 40.0% |
| !!! | CCATGCCATTTTTGCTAATC+TGG | - | chr4.3:25625845-25625864 | MS.gene47535:intron | 40.0% |
| AATTGCAGGGGTAAAATGCC+AGG | - | chr4.3:25625919-25625938 | MS.gene47535:intron | 45.0% | |
| AATTGCAGGGGTAAAATGCC+AGG | + | chr4.3:25625938-25625919 | None:intergenic | 45.0% | |
| ACTGGATTCTGTGCTGGAAA+AGG | - | chr4.3:25626802-25626821 | MS.gene47535:CDS | 45.0% | |
| ATACCATCCAGAAGAACACC+TGG | + | chr4.3:25625176-25625195 | None:intergenic | 45.0% | |
| ATGTGCTGTGGAGATGAGAA+AGG | - | chr4.3:25624139-25624158 | MS.gene47535:intron | 45.0% | |
| CAAGACCACGTAATGTTCCA+AGG | + | chr4.3:25623774-25623793 | None:intergenic | 45.0% | |
| CACACGGGTGTAAATAGAGT+GGG | + | chr4.3:25626223-25626242 | None:intergenic | 45.0% | |
| CCAGATTGGCAAAAATGGCA+TGG | - | chr4.3:25625562-25625581 | MS.gene47535:intron | 45.0% | |
| CGTCACCAGATTGGCAAAAA+TGG | - | chr4.3:25625557-25625576 | MS.gene47535:intron | 45.0% | |
| CTTCTTCTATGGTCCCAAAC+TGG | - | chr4.3:25624919-25624938 | MS.gene47535:intron | 45.0% | |
| GAATGAGAAGGAAAAGGTGG+TGG | - | chr4.3:25623633-25623652 | MS.gene47535:CDS | 45.0% | |
| GGAAATGACGAAATTACCCC+TGG | + | chr4.3:25625826-25625845 | None:intergenic | 45.0% | |
| GGAGAATGAGAAGGAAAAGG+TGG | - | chr4.3:25623630-25623649 | MS.gene47535:CDS | 45.0% | |
| GGTCACATAGTATCTCAGGT+TGG | + | chr4.3:25626625-25626644 | None:intergenic | 45.0% | |
| GTCATCACCACCACATTCAT+TGG | - | chr4.3:25623603-25623622 | MS.gene47535:CDS | 45.0% | |
| TCACACGGGTGTAAATAGAG+TGG | + | chr4.3:25626224-25626243 | None:intergenic | 45.0% | |
| TGACGTGGCAGTGATTAAGT+TGG | + | chr4.3:25625542-25625561 | None:intergenic | 45.0% | |
| TGCCCTGTTACTGAAAAGGT+TGG | - | chr4.3:25623658-25623677 | MS.gene47535:CDS | 45.0% | |
| TGTGCTGTGGAGATGAGAAA+GGG | - | chr4.3:25624140-25624159 | MS.gene47535:intron | 45.0% | |
| TTAAACGCCGCCTATTTGCA+GGG | - | chr4.3:25625966-25625985 | MS.gene47535:intron | 45.0% | |
| TTTAAACGCCGCCTATTTGC+AGG | - | chr4.3:25625965-25625984 | MS.gene47535:intron | 45.0% | |
| ! | ATGCCAGGATTAGCGATTAC+AGG | - | chr4.3:25625934-25625953 | MS.gene47535:intron | 45.0% |
| ! | ATGCCAGGATTAGCGATTAC+AGG | + | chr4.3:25625953-25625934 | None:intergenic | 45.0% |
| ! | TGCCAGGATTAGCGATTACA+GGG | - | chr4.3:25625935-25625954 | MS.gene47535:intron | 45.0% |
| ! | TGCCAGGATTAGCGATTACA+GGG | + | chr4.3:25625954-25625935 | None:intergenic | 45.0% |
| !! | AGGTTGGTAATCACAGCAGA+TGG | + | chr4.3:25626609-25626628 | None:intergenic | 45.0% |
| !! | TTTTTGCCAATCTGGTGACG+TGG | + | chr4.3:25625557-25625576 | None:intergenic | 45.0% |
| !!! | AGTTTTGTTGTGGACATGCC+AGG | - | chr4.3:25625155-25625174 | MS.gene47535:intron | 45.0% |
| !!! | CCATGCCATTTTTGCCAATC+TGG | + | chr4.3:25625565-25625584 | None:intergenic | 45.0% |
| !!! | AAATTTAATCATTTTTTTTA+CGG | - | chr4.3:25626181-25626200 | MS.gene47535:intron | 5.0% |
| !!! | AAGTAATTATATATTTTTTT+TGG | + | chr4.3:25626354-25626373 | None:intergenic | 5.0% |
| !!! | TAAAAAAAATGATTAAATTT+TGG | + | chr4.3:25626181-25626200 | None:intergenic | 5.0% |
| AGAACCATAGGGAAGCAGAG+AGG | - | chr4.3:25623722-25623741 | MS.gene47535:CDS | 50.0% | |
| AGATGCATGGCTGCATGAAG+AGG | + | chr4.3:25626906-25626925 | None:intergenic | 50.0% | |
| ATGCCAGGTGTTCTTCTGGA+TGG | - | chr4.3:25625170-25625189 | MS.gene47535:intron | 50.0% | |
| GGAAGCAGAGAGGAGAAGAA+GGG | - | chr4.3:25623732-25623751 | MS.gene47535:CDS | 50.0% | |
| GGTCACCTTGGAACATTACG+TGG | - | chr4.3:25623766-25623785 | MS.gene47535:CDS | 50.0% | |
| GTCCCTGTAATCGCTAATCC+TGG | - | chr4.3:25625470-25625489 | MS.gene47535:intron | 50.0% | |
| GTCCCTGTAATCGCTAATCC+TGG | + | chr4.3:25625489-25625470 | None:intergenic | 50.0% | |
| TAAACGCCGCCTATTTGCAG+GGG | - | chr4.3:25625967-25625986 | MS.gene47535:intron | 50.0% | |
| TGTGTTTCGCCCCTGCAAAT+AGG | + | chr4.3:25625979-25625998 | None:intergenic | 50.0% | |
| TTCTCCTCTCTGCTTCCCTA+TGG | + | chr4.3:25623729-25623748 | None:intergenic | 50.0% | |
| ! | GGAGTGCCCTGTTACTGAAA+AGG | - | chr4.3:25623654-25623673 | MS.gene47535:CDS | 50.0% |
| GGACATGCCAGGTGTTCTTC+TGG | - | chr4.3:25625166-25625185 | MS.gene47535:intron | 55.0% | |
| GGGAAGCAGAGAGGAGAAGA+AGG | - | chr4.3:25623731-25623750 | MS.gene47535:CDS | 55.0% | |
| GTTTCGCCCCTGCAAATAGG+CGG | + | chr4.3:25625976-25625995 | None:intergenic | 55.0% | |
| TCACTGCCACGTCACCAGAT+TGG | - | chr4.3:25625548-25625567 | MS.gene47535:intron | 55.0% | |
| !! | CAAGGCACTGGATTCTGTGC+TGG | - | chr4.3:25626796-25626815 | MS.gene47535:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 25623505 | 25626937 | 25623505 | ID=MS.gene47535 |
| chr4.3 | mRNA | 25623505 | 25626937 | 25623505 | ID=MS.gene47535.t1;Parent=MS.gene47535 |
| chr4.3 | exon | 25626629 | 25626937 | 25626629 | ID=MS.gene47535.t1.exon1;Parent=MS.gene47535.t1 |
| chr4.3 | CDS | 25626629 | 25626937 | 25626629 | ID=cds.MS.gene47535.t1;Parent=MS.gene47535.t1 |
| chr4.3 | exon | 25623505 | 25624002 | 25623505 | ID=MS.gene47535.t1.exon2;Parent=MS.gene47535.t1 |
| chr4.3 | CDS | 25623505 | 25624002 | 25623505 | ID=cds.MS.gene47535.t1;Parent=MS.gene47535.t1 |
| Gene Sequence |
| Protein sequence |
