Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47593.t1 | KEH34998.1 | 89.6 | 309 | 30 | 1 | 48 | 356 | 1 | 307 | 1.30E-160 | 575.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47593.t1 | Q94BN0 | 44.6 | 305 | 148 | 4 | 32 | 316 | 47 | 350 | 1.2e-69 | 265.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47593.t1 | A0A072V0V6 | 89.6 | 309 | 30 | 1 | 48 | 356 | 1 | 307 | 9.6e-161 | 575.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene47593.t1 | TR | TAZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47593.t1 | MTR_3g075270 | 89.644 | 309 | 30 | 1 | 48 | 356 | 1 | 307 | 0.0 | 558 |
| MS.gene47593.t1 | MTR_4g104140 | 50.904 | 332 | 150 | 5 | 9 | 330 | 7 | 335 | 2.20e-115 | 339 |
| MS.gene47593.t1 | MTR_4g104140 | 55.642 | 257 | 109 | 3 | 77 | 330 | 11 | 265 | 2.35e-97 | 291 |
| MS.gene47593.t1 | MTR_5g015680 | 37.542 | 301 | 178 | 5 | 17 | 310 | 66 | 363 | 1.25e-66 | 215 |
| MS.gene47593.t1 | MTR_5g015680 | 37.542 | 301 | 178 | 5 | 17 | 310 | 105 | 402 | 6.82e-66 | 214 |
| MS.gene47593.t1 | MTR_5g015680 | 38.519 | 270 | 161 | 4 | 44 | 310 | 1 | 268 | 1.52e-62 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47593.t1 | AT3G48360 | 46.405 | 306 | 143 | 4 | 31 | 316 | 46 | 350 | 2.13e-87 | 268 |
| MS.gene47593.t1 | AT5G63160 | 45.217 | 345 | 163 | 7 | 18 | 340 | 19 | 359 | 2.51e-85 | 263 |
| MS.gene47593.t1 | AT3G48360 | 47.059 | 272 | 124 | 3 | 31 | 283 | 46 | 316 | 4.02e-78 | 243 |
| MS.gene47593.t1 | AT5G63160 | 45.993 | 287 | 133 | 5 | 18 | 283 | 19 | 304 | 4.79e-77 | 239 |
| MS.gene47593.t1 | AT3G48360 | 49.388 | 245 | 113 | 3 | 82 | 316 | 1 | 244 | 1.16e-73 | 229 |
| MS.gene47593.t1 | AT5G63160 | 49.077 | 271 | 126 | 5 | 78 | 340 | 8 | 274 | 1.55e-72 | 227 |
| MS.gene47593.t1 | AT1G05690 | 38.361 | 305 | 174 | 6 | 31 | 327 | 66 | 364 | 6.40e-64 | 207 |
| MS.gene47593.t1 | AT4G37610 | 37.124 | 299 | 176 | 7 | 20 | 310 | 57 | 351 | 7.23e-61 | 200 |
| MS.gene47593.t1 | AT5G67480 | 37.294 | 303 | 177 | 8 | 17 | 310 | 59 | 357 | 2.87e-59 | 196 |
| MS.gene47593.t1 | AT5G67480 | 37.294 | 303 | 177 | 8 | 17 | 310 | 59 | 357 | 2.87e-59 | 196 |
| MS.gene47593.t1 | AT5G67480 | 37.294 | 303 | 177 | 8 | 17 | 310 | 70 | 368 | 4.28e-59 | 196 |
Find 95 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACCGCTTCGAAATTAT+TGG | 0.158196 | 3.3:+65014581 | None:intergenic |
| AACACTTTACCACATGTAAT+AGG | 0.256902 | 3.3:-65014206 | MS.gene47593:CDS |
| CTCCACATGTCAAGCTTTGC+AGG | 0.259755 | 3.3:-65014238 | MS.gene47593:CDS |
| ATGGATATAAATGTAAGTTT+TGG | 0.269976 | 3.3:+65015268 | None:intergenic |
| AATGCACCTTTGCTTTAGTT+TGG | 0.301923 | 3.3:+65014710 | None:intergenic |
| CATGCAAGGTTCCTCTTTGC+AGG | 0.308788 | 3.3:-65013922 | MS.gene47593:intron |
| ACACTTTACCACATGTAATA+GGG | 0.322892 | 3.3:-65014205 | MS.gene47593:CDS |
| TACATTTCATCTACACTTCC+AGG | 0.332926 | 3.3:-65015009 | MS.gene47593:intron |
| GTATTATGCCAGTGGGAGTA+TGG | 0.342214 | 3.3:+65015249 | None:intergenic |
| CATTCCCCGTGGTCATGAAT+TGG | 0.355331 | 3.3:+65014676 | None:intergenic |
| ATCATATGATGTGGAGATTA+CGG | 0.355897 | 3.3:-65014280 | MS.gene47593:CDS |
| TCCAGTGCACGCAACCGTTC+TGG | 0.358145 | 3.3:-65015222 | MS.gene47593:intron |
| AAGTGAAGCTGTACAATGTT+TGG | 0.366740 | 3.3:-65014337 | MS.gene47593:CDS |
| ATGCACCTTTGCTTTAGTTT+GGG | 0.372763 | 3.3:+65014711 | None:intergenic |
| ACCAGAACGGTTGCGTGCAC+TGG | 0.385474 | 3.3:+65015221 | None:intergenic |
| ACACACTTGAAGTAGAGATT+TGG | 0.400686 | 3.3:+65014615 | None:intergenic |
| AGTCAAGAGAGTCTTCTAAT+TGG | 0.402862 | 3.3:-65013139 | MS.gene47593:CDS |
| TCATATGATGTGGAGATTAC+GGG | 0.403872 | 3.3:-65014279 | MS.gene47593:CDS |
| TGGGACTATGCAGGTGCAGC+AGG | 0.411993 | 3.3:-65014791 | MS.gene47593:intron |
| CCTTGTCCTTAGCAATTGTA+AGG | 0.421710 | 3.3:+65013208 | None:intergenic |
| CAAGGAGAGATGAGGTAATT+CGG | 0.427024 | 3.3:-65013190 | MS.gene47593:CDS |
| GTCCCCAGTTCTAAAAGAAA+TGG | 0.455888 | 3.3:-65015092 | MS.gene47593:CDS |
| GAGGAACCTTGCATGCATCT+TGG | 0.458524 | 3.3:+65013930 | None:intergenic |
| GAAGAGAGGAAATAAACATA+GGG | 0.473780 | 3.3:-65014385 | MS.gene47593:CDS |
| AGAAGAGAGGAAATAAACAT+AGG | 0.475467 | 3.3:-65014386 | MS.gene47593:CDS |
| AACGGTTGCGTGCACTGGAA+AGG | 0.491203 | 3.3:+65015226 | None:intergenic |
| GAATACTAGAGTAGAGGAAG+AGG | 0.495047 | 3.3:-65013168 | MS.gene47593:CDS |
| ACGGTTGCGTGCACTGGAAA+GGG | 0.504977 | 3.3:+65015227 | None:intergenic |
| CAAGAGAGTCTTCTAATTGG+TGG | 0.514114 | 3.3:-65013136 | MS.gene47593:CDS |
| AACGGTAACGTTAAAATATG+TGG | 0.514946 | 3.3:-65015061 | MS.gene47593:CDS |
| AAGGCGATGGCTGCATTGGT+TGG | 0.517717 | 3.3:+65015034 | None:intergenic |
| TCCACATGTCAAGCTTTGCA+GGG | 0.524594 | 3.3:-65014237 | MS.gene47593:CDS |
| CAATAATTTCGAAGCGGTGA+AGG | 0.537239 | 3.3:-65014580 | MS.gene47593:CDS |
| TGGAAAGGGTATTATGCCAG+TGG | 0.539651 | 3.3:+65015241 | None:intergenic |
| TTGATCCAATTCATGACCAC+GGG | 0.542240 | 3.3:-65014681 | MS.gene47593:CDS |
| TATTGCATAAACATGACCCT+TGG | 0.542900 | 3.3:-65014539 | MS.gene47593:CDS |
| TACGAGGTGGAAACAAATAG+TGG | 0.546964 | 3.3:-65013261 | MS.gene47593:CDS |
| TACAAAGGCGATGGCTGCAT+TGG | 0.548314 | 3.3:+65015030 | None:intergenic |
| CTTTAACCAAGATGCATGCA+AGG | 0.552171 | 3.3:-65013936 | MS.gene47593:CDS |
| CCTTACAATTGCTAAGGACA+AGG | 0.552243 | 3.3:-65013208 | MS.gene47593:CDS |
| ATTTATATCCATACTCCCAC+TGG | 0.558851 | 3.3:-65015257 | MS.gene47593:CDS |
| TCTCAACAAAGAACGAGAAT+CGG | 0.559033 | 3.3:-65014496 | MS.gene47593:intron |
| ATTCTCGTTCTTTGTTGAGA+CGG | 0.562147 | 3.3:+65014499 | None:intergenic |
| TGTCTTCCTTACAATTGCTA+AGG | 0.563853 | 3.3:-65013214 | MS.gene47593:CDS |
| CCACATGTCAAGCTTTGCAG+GGG | 0.564441 | 3.3:-65014236 | MS.gene47593:CDS |
| CACTTTACCACATGTAATAG+GGG | 0.564845 | 3.3:-65014204 | MS.gene47593:CDS |
| GATAGCTGAGAAAGAGAACA+AGG | 0.575893 | 3.3:-65013291 | MS.gene47593:CDS |
| TTGGAGCATATATGTAGAGA+AGG | 0.575989 | 3.3:-65014318 | MS.gene47593:CDS |
| ATGATGTCAACTTCGAGCCA+AGG | 0.576653 | 3.3:+65014522 | None:intergenic |
| ATTCATGACCACGGGGAATG+TGG | 0.583872 | 3.3:-65014673 | MS.gene47593:CDS |
| TGATGTCAACTTCGAGCCAA+GGG | 0.587603 | 3.3:+65014523 | None:intergenic |
| AAAGAAATGGTAACGTCCAA+CGG | 0.587929 | 3.3:-65015079 | MS.gene47593:CDS |
| ATCCTTTCCCCTATTACATG+TGG | 0.589791 | 3.3:+65014197 | None:intergenic |
| TGTGGTGGACGTGTTGCACT+TGG | 0.589909 | 3.3:-65014655 | MS.gene47593:CDS |
| ACGAGGTGGAAACAAATAGT+GGG | 0.591901 | 3.3:-65013260 | MS.gene47593:CDS |
| CCCCTGCAAAGCTTGACATG+TGG | 0.598401 | 3.3:+65014236 | None:intergenic |
| TGTTTCGCATACCTGCAAAG+AGG | 0.600432 | 3.3:+65013911 | None:intergenic |
| CAATGCCCAAACTAAAGCAA+AGG | 0.601233 | 3.3:-65014716 | MS.gene47593:CDS |
| TTGTAAGGAAGACATGGCTA+TGG | 0.601532 | 3.3:+65013223 | None:intergenic |
| GCTGAGAAAGAGAACAAGGA+AGG | 0.604375 | 3.3:-65013287 | MS.gene47593:CDS |
| CAACGTGGCATCATATGATG+TGG | 0.607548 | 3.3:-65014289 | MS.gene47593:CDS |
| AATTCGGAATACTAGAGTAG+AGG | 0.608608 | 3.3:-65013174 | MS.gene47593:CDS |
| GGAGAAAACAGAGAAGCCAT+TGG | 0.615463 | 3.3:+65015317 | None:intergenic |
| GAAGCGGTGAAGGAAACAGA+GGG | 0.616249 | 3.3:-65014570 | MS.gene47593:CDS |
| TACCACATGTAATAGGGGAA+AGG | 0.617235 | 3.3:-65014199 | MS.gene47593:CDS |
| GGAGACTCGAGAGAGGGTGT+AGG | 0.617740 | 3.3:-65014006 | MS.gene47593:intron |
| GAGAGGAAATAAACATAGGG+AGG | 0.621519 | 3.3:-65014382 | MS.gene47593:CDS |
| CTTGATCCAATTCATGACCA+CGG | 0.630679 | 3.3:-65014682 | MS.gene47593:CDS |
| CATATGATGTGGAGATTACG+GGG | 0.632166 | 3.3:-65014278 | MS.gene47593:CDS |
| CATGACCACGGGGAATGTGG+TGG | 0.632280 | 3.3:-65014670 | MS.gene47593:CDS |
| TAGCAATTGTAAGGAAGACA+TGG | 0.634002 | 3.3:+65013217 | None:intergenic |
| CTGGAGAGACTTCACTGGAG+AGG | 0.634858 | 3.3:+65014174 | None:intergenic |
| GTAGGTGTTGTAAGTCTATG+TGG | 0.636359 | 3.3:-65013988 | MS.gene47593:CDS |
| GTGAAACAGAGGAAGAAGAG+AGG | 0.641073 | 3.3:-65014399 | MS.gene47593:intron |
| CGGTGAAGGAAACAGAGGGG+TGG | 0.647649 | 3.3:-65014566 | MS.gene47593:CDS |
| AGTGTAGATGAAATGTACAA+AGG | 0.647924 | 3.3:+65015015 | None:intergenic |
| GGAAAGGGTATTATGCCAGT+GGG | 0.649548 | 3.3:+65015242 | None:intergenic |
| AGTTACCAATAATTTCGAAG+CGG | 0.654751 | 3.3:-65014586 | MS.gene47593:CDS |
| GCTAAGGACAAGGAGAGATG+AGG | 0.655281 | 3.3:-65013198 | MS.gene47593:CDS |
| AAAATAGAAGAGTACCAGAA+CGG | 0.658371 | 3.3:+65015208 | None:intergenic |
| GGGACTATGCAGGTGCAGCA+GGG | 0.659269 | 3.3:-65014790 | MS.gene47593:intron |
| ACAAGGAAGGTGATACGAGG+TGG | 0.662953 | 3.3:-65013274 | MS.gene47593:CDS |
| CATGTGGAGAATTTAGTACA+CGG | 0.664071 | 3.3:+65014252 | None:intergenic |
| CACATCATATGATGCCACGT+TGG | 0.666948 | 3.3:+65014290 | None:intergenic |
| GATGAAATGTACAAAGGCGA+TGG | 0.667885 | 3.3:+65015021 | None:intergenic |
| CGAAGCGGTGAAGGAAACAG+AGG | 0.673165 | 3.3:-65014571 | MS.gene47593:CDS |
| CGAGGTGGAAACAAATAGTG+GGG | 0.698764 | 3.3:-65013259 | MS.gene47593:CDS |
| TAGAGAAGGTTGCACCAACG+TGG | 0.699752 | 3.3:-65014304 | MS.gene47593:CDS |
| CACGTCCACCACATTCCCCG+TGG | 0.707824 | 3.3:+65014665 | None:intergenic |
| AGACGTGCGAGAGTACGAGA+AGG | 0.721408 | 3.3:+65014742 | None:intergenic |
| ACTATGCAGGTGCAGCAGGG+AGG | 0.723689 | 3.3:-65014787 | MS.gene47593:intron |
| AGAACAAGGAAGGTGATACG+AGG | 0.743284 | 3.3:-65013277 | MS.gene47593:CDS |
| ATGATGTGGAGATTACGGGG+AGG | 0.765492 | 3.3:-65014275 | MS.gene47593:CDS |
| AAGCGGTGAAGGAAACAGAG+GGG | 0.771640 | 3.3:-65014569 | MS.gene47593:CDS |
| TGATCCAATTCATGACCACG+GGG | 0.774666 | 3.3:-65014680 | MS.gene47593:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATTTCTTTAATAAGT+TGG | - | chr3.3:65013988-65014007 | MS.gene47593:CDS | 10.0% |
| !!! | AATTGAATTAACAAATTTTT+TGG | - | chr3.3:65013479-65013498 | MS.gene47593:intron | 10.0% |
| !!! | CATTTTTTCATATAAAAAAA+AGG | - | chr3.3:65014557-65014576 | MS.gene47593:CDS | 10.0% |
| !!! | GTTATTAATCGTTATTATTT+TGG | - | chr3.3:65014662-65014681 | MS.gene47593:CDS | 15.0% |
| !! | ATATAGTGATTGAAAATGAA+CGG | + | chr3.3:65013246-65013265 | None:intergenic | 20.0% |
| !! | GGTTAATAAAGCTATATTTA+CGG | - | chr3.3:65015080-65015099 | MS.gene47593:CDS | 20.0% |
| !!! | ATGGATATAAATGTAAGTTT+TGG | + | chr3.3:65013152-65013171 | None:intergenic | 20.0% |
| !!! | TAGTTACTAGTTTTCATTTA+GGG | - | chr3.3:65015052-65015071 | MS.gene47593:CDS | 20.0% |
| !!! | TGGATATAAATGTAAGTTTT+GGG | + | chr3.3:65013151-65013170 | None:intergenic | 20.0% |
| ! | AAACAAATAATAACTACAGC+TGG | - | chr3.3:65014582-65014601 | MS.gene47593:CDS | 25.0% |
| ! | AAGAGAGAGATAACTATTAA+TGG | + | chr3.3:65014293-65014312 | None:intergenic | 25.0% |
| ! | ATTAAAACTGGAGAAAAAAC+TGG | + | chr3.3:65014265-65014284 | None:intergenic | 25.0% |
| ! | CCATTGGAAATTAATTAAGT+GGG | + | chr3.3:65014336-65014355 | None:intergenic | 25.0% |
| ! | TCCATTGGAAATTAATTAAG+TGG | + | chr3.3:65014337-65014356 | None:intergenic | 25.0% |
| ! | TGACTAATTGAGGAATATAA+TGG | - | chr3.3:65014760-65014779 | MS.gene47593:CDS | 25.0% |
| !! | GGATATAAATGTAAGTTTTG+GGG | + | chr3.3:65013150-65013169 | None:intergenic | 25.0% |
| !! | GGTCTAAATACATCAATTTT+CGG | - | chr3.3:65013500-65013519 | MS.gene47593:intron | 25.0% |
| !!! | CTTTGAAATTAACCATCAAT+GGG | - | chr3.3:65014831-65014850 | MS.gene47593:intron | 25.0% |
| !!! | GATATAAATGTAAGTTTTGG+GGG | + | chr3.3:65013149-65013168 | None:intergenic | 25.0% |
| !!! | GTAGTTACTAGTTTTCATTT+AGG | - | chr3.3:65015051-65015070 | MS.gene47593:CDS | 25.0% |
| !!! | TAGTTTTCATTTAGGGTATT+TGG | - | chr3.3:65015059-65015078 | MS.gene47593:CDS | 25.0% |
| !!! | TGTTCTAAAATTGATCTCAA+AGG | - | chr3.3:65013295-65013314 | MS.gene47593:CDS | 25.0% |
| !!! | TTACCATTTCTTTTAGAACT+GGG | + | chr3.3:65013331-65013350 | None:intergenic | 25.0% |
| !!! | TTCTTTAATAAGTTGGTGAT+CGG | - | chr3.3:65013995-65014014 | MS.gene47593:CDS | 25.0% |
| AACACTTTACCACATGTAAT+AGG | - | chr3.3:65014211-65014230 | MS.gene47593:CDS | 30.0% | |
| AACGGTAACGTTAAAATATG+TGG | - | chr3.3:65013356-65013375 | MS.gene47593:intron | 30.0% | |
| AAGTAGCAATTGACTAATTG+AGG | - | chr3.3:65014750-65014769 | MS.gene47593:CDS | 30.0% | |
| ACACTTTACCACATGTAATA+GGG | - | chr3.3:65014212-65014231 | MS.gene47593:CDS | 30.0% | |
| AGAAGAGAGGAAATAAACAT+AGG | - | chr3.3:65014031-65014050 | MS.gene47593:intron | 30.0% | |
| AGGGAGGATATGAAAAATTA+TGG | - | chr3.3:65013646-65013665 | MS.gene47593:intron | 30.0% | |
| AGTGTAGATGAAATGTACAA+AGG | + | chr3.3:65013405-65013424 | None:intergenic | 30.0% | |
| AGTTACCAATAATTTCGAAG+CGG | - | chr3.3:65013831-65013850 | MS.gene47593:intron | 30.0% | |
| ATAGTCCCAATCAATTCTTA+GGG | + | chr3.3:65013615-65013634 | None:intergenic | 30.0% | |
| ATCATATGATGTGGAGATTA+CGG | - | chr3.3:65014137-65014156 | MS.gene47593:intron | 30.0% | |
| CACTTGACAAAAAAAGACAA+TGG | - | chr3.3:65013586-65013605 | MS.gene47593:intron | 30.0% | |
| CCCACTTAATTAATTTCCAA+TGG | - | chr3.3:65014333-65014352 | MS.gene47593:CDS | 30.0% | |
| GAAGAGAGGAAATAAACATA+GGG | - | chr3.3:65014032-65014051 | MS.gene47593:intron | 30.0% | |
| GACTAACTCACTAAAATGTT+TGG | + | chr3.3:65015004-65015023 | None:intergenic | 30.0% | |
| TAATTTCACTATTACTGACC+TGG | + | chr3.3:65013429-65013448 | None:intergenic | 30.0% | |
| TATATTTACGGAAATGTGAC+AGG | - | chr3.3:65015092-65015111 | MS.gene47593:CDS | 30.0% | |
| TTAATGGCTGTGATTAAAAC+TGG | + | chr3.3:65014277-65014296 | None:intergenic | 30.0% | |
| TTGTATGATATACCCATTGA+TGG | + | chr3.3:65014846-65014865 | None:intergenic | 30.0% | |
| ! | CAAATGCAATTGCATGTTTT+CGG | - | chr3.3:65015305-65015324 | MS.gene47593:CDS | 30.0% |
| ! | CCATTGATGGTTAATTTCAA+AGG | + | chr3.3:65014833-65014852 | None:intergenic | 30.0% |
| !! | AAAATAGAAGAGTACCAGAA+CGG | + | chr3.3:65013212-65013231 | None:intergenic | 30.0% |
| !! | CCTTTGAAATTAACCATCAA+TGG | - | chr3.3:65014830-65014849 | MS.gene47593:intron | 30.0% |
| !! | GGCATATTTTTACATTCGTT+GGG | - | chr3.3:65014894-65014913 | MS.gene47593:intron | 30.0% |
| !! | TCTTTAATAAGTTGGTGATC+GGG | - | chr3.3:65013996-65014015 | MS.gene47593:CDS | 30.0% |
| !! | TGGCATATTTTTACATTCGT+TGG | - | chr3.3:65014893-65014912 | MS.gene47593:intron | 30.0% |
| !!! | ACATATTTTAACGTTACCGT+TGG | + | chr3.3:65013357-65013376 | None:intergenic | 30.0% |
| !!! | CATTGTCTTTTTTTGTCAAG+TGG | + | chr3.3:65013588-65013607 | None:intergenic | 30.0% |
| !!! | GTTACCATTTCTTTTAGAAC+TGG | + | chr3.3:65013332-65013351 | None:intergenic | 30.0% |
| !!! | TACCATTTCTTTTAGAACTG+GGG | + | chr3.3:65013330-65013349 | None:intergenic | 30.0% |
| AAGTGAAGCTGTACAATGTT+TGG | - | chr3.3:65014080-65014099 | MS.gene47593:intron | 35.0% | |
| AATGCACCTTTGCTTTAGTT+TGG | + | chr3.3:65013710-65013729 | None:intergenic | 35.0% | |
| AATTCGGAATACTAGAGTAG+AGG | - | chr3.3:65015243-65015262 | MS.gene47593:CDS | 35.0% | |
| ACAAAGTGACAAAACCAACA+CGG | - | chr3.3:65014920-65014939 | MS.gene47593:intron | 35.0% | |
| ACACACTTGAAGTAGAGATT+TGG | + | chr3.3:65013805-65013824 | None:intergenic | 35.0% | |
| AGTCAAGAGAGTCTTCTAAT+TGG | - | chr3.3:65015278-65015297 | MS.gene47593:CDS | 35.0% | |
| ATAATGTATACGTACCGTGT+TGG | + | chr3.3:65014937-65014956 | None:intergenic | 35.0% | |
| ATTCTCGTTCTTTGTTGAGA+CGG | + | chr3.3:65013921-65013940 | None:intergenic | 35.0% | |
| ATTTATATCCATACTCCCAC+TGG | - | chr3.3:65013160-65013179 | MS.gene47593:CDS | 35.0% | |
| CACGGTACGTATACATTATA+TGG | - | chr3.3:65014938-65014957 | MS.gene47593:intron | 35.0% | |
| CACTTTACCACATGTAATAG+GGG | - | chr3.3:65014213-65014232 | MS.gene47593:CDS | 35.0% | |
| CATAGTCCCAATCAATTCTT+AGG | + | chr3.3:65013616-65013635 | None:intergenic | 35.0% | |
| CATGTGGAGAATTTAGTACA+CGG | + | chr3.3:65014168-65014187 | None:intergenic | 35.0% | |
| TACATTTCATCTACACTTCC+AGG | - | chr3.3:65013408-65013427 | MS.gene47593:intron | 35.0% | |
| TAGCAATTGTAAGGAAGACA+TGG | + | chr3.3:65015203-65015222 | None:intergenic | 35.0% | |
| TATTGCATAAACATGACCCT+TGG | - | chr3.3:65013878-65013897 | MS.gene47593:intron | 35.0% | |
| TCATATGATGTGGAGATTAC+GGG | - | chr3.3:65014138-65014157 | MS.gene47593:intron | 35.0% | |
| TCTCAACAAAGAACGAGAAT+CGG | - | chr3.3:65013921-65013940 | MS.gene47593:intron | 35.0% | |
| TGTCTTCCTTACAATTGCTA+AGG | - | chr3.3:65015203-65015222 | MS.gene47593:intron | 35.0% | |
| TTGGAGCATATATGTAGAGA+AGG | - | chr3.3:65014099-65014118 | MS.gene47593:intron | 35.0% | |
| ! | AAAGAAATGGTAACGTCCAA+CGG | - | chr3.3:65013338-65013357 | MS.gene47593:intron | 35.0% |
| ! | ATGCACCTTTGCTTTAGTTT+GGG | + | chr3.3:65013709-65013728 | None:intergenic | 35.0% |
| ! | TTTTTGTCAAGTGGATGAGT+GGG | + | chr3.3:65013579-65013598 | None:intergenic | 35.0% |
| !!! | TTTTTTGTCAAGTGGATGAG+TGG | + | chr3.3:65013580-65013599 | None:intergenic | 35.0% |
| AAAAACTGGAGAGACTTCAC+TGG | + | chr3.3:65014251-65014270 | None:intergenic | 40.0% | |
| ACGAGGTGGAAACAAATAGT+GGG | - | chr3.3:65015157-65015176 | MS.gene47593:intron | 40.0% | |
| AGAATTGATTGGGACTATGC+AGG | - | chr3.3:65013617-65013636 | MS.gene47593:intron | 40.0% | |
| ATCCTTTCCCCTATTACATG+TGG | + | chr3.3:65014223-65014242 | None:intergenic | 40.0% | |
| ATGGACAAGATTTCACTGCA+TGG | - | chr3.3:65014352-65014371 | MS.gene47593:CDS | 40.0% | |
| CAAGAGAGTCTTCTAATTGG+TGG | - | chr3.3:65015281-65015300 | MS.gene47593:CDS | 40.0% | |
| CAAGGAGAGATGAGGTAATT+CGG | - | chr3.3:65015227-65015246 | MS.gene47593:CDS | 40.0% | |
| CAATAATTTCGAAGCGGTGA+AGG | - | chr3.3:65013837-65013856 | MS.gene47593:intron | 40.0% | |
| CAATGCCCAAACTAAAGCAA+AGG | - | chr3.3:65013701-65013720 | MS.gene47593:intron | 40.0% | |
| CATATGATGTGGAGATTACG+GGG | - | chr3.3:65014139-65014158 | MS.gene47593:intron | 40.0% | |
| CATGTAGCTAACTACTAACG+TGG | - | chr3.3:65014873-65014892 | MS.gene47593:intron | 40.0% | |
| CCTTACAATTGCTAAGGACA+AGG | - | chr3.3:65015209-65015228 | MS.gene47593:intron | 40.0% | |
| CCTTGTCCTTAGCAATTGTA+AGG | + | chr3.3:65015212-65015231 | None:intergenic | 40.0% | |
| CTTCACCGCTTCGAAATTAT+TGG | + | chr3.3:65013839-65013858 | None:intergenic | 40.0% | |
| CTTGATCCAATTCATGACCA+CGG | - | chr3.3:65013735-65013754 | MS.gene47593:intron | 40.0% | |
| CTTTAACCAAGATGCATGCA+AGG | - | chr3.3:65014481-65014500 | MS.gene47593:intron | 40.0% | |
| GAAAATGAACGGAGACATGA+AGG | + | chr3.3:65013235-65013254 | None:intergenic | 40.0% | |
| GAATACTAGAGTAGAGGAAG+AGG | - | chr3.3:65015249-65015268 | MS.gene47593:CDS | 40.0% | |
| GAGAGGAAATAAACATAGGG+AGG | - | chr3.3:65014035-65014054 | MS.gene47593:intron | 40.0% | |
| GATAGCTGAGAAAGAGAACA+AGG | - | chr3.3:65015126-65015145 | MS.gene47593:intron | 40.0% | |
| GATGAAATGTACAAAGGCGA+TGG | + | chr3.3:65013399-65013418 | None:intergenic | 40.0% | |
| GGTGACCCTAAGAATTGATT+GGG | - | chr3.3:65013607-65013626 | MS.gene47593:intron | 40.0% | |
| TACCACATGTAATAGGGGAA+AGG | - | chr3.3:65014218-65014237 | MS.gene47593:CDS | 40.0% | |
| TACGAGGTGGAAACAAATAG+TGG | - | chr3.3:65015156-65015175 | MS.gene47593:intron | 40.0% | |
| TCTCGAGTCTCCTATTACAT+GGG | + | chr3.3:65014403-65014422 | None:intergenic | 40.0% | |
| TGCAGTGAAATCTTGTCCAT+TGG | + | chr3.3:65014352-65014371 | None:intergenic | 40.0% | |
| TGGTGACCCTAAGAATTGAT+TGG | - | chr3.3:65013606-65013625 | MS.gene47593:intron | 40.0% | |
| TTGATCCAATTCATGACCAC+GGG | - | chr3.3:65013736-65013755 | MS.gene47593:intron | 40.0% | |
| TTGTAAGGAAGACATGGCTA+TGG | + | chr3.3:65015197-65015216 | None:intergenic | 40.0% | |
| ! | GTAGGTGTTGTAAGTCTATG+TGG | - | chr3.3:65014429-65014448 | MS.gene47593:intron | 40.0% |
| !! | GTCCCCAGTTCTAAAAGAAA+TGG | - | chr3.3:65013325-65013344 | MS.gene47593:intron | 40.0% |
| !!! | TGTAAGTTTTGGGGGAAAAG+CGG | + | chr3.3:65013141-65013160 | None:intergenic | 40.0% |
| AGAACAAGGAAGGTGATACG+AGG | - | chr3.3:65015140-65015159 | MS.gene47593:intron | 45.0% | |
| ATGATGTCAACTTCGAGCCA+AGG | + | chr3.3:65013898-65013917 | None:intergenic | 45.0% | |
| CAACGTGGCATCATATGATG+TGG | - | chr3.3:65014128-65014147 | MS.gene47593:intron | 45.0% | |
| CACATCATATGATGCCACGT+TGG | + | chr3.3:65014130-65014149 | None:intergenic | 45.0% | |
| CGAGGTGGAAACAAATAGTG+GGG | - | chr3.3:65015158-65015177 | MS.gene47593:intron | 45.0% | |
| CTCGAGTCTCCTATTACATG+GGG | + | chr3.3:65014402-65014421 | None:intergenic | 45.0% | |
| CTCTCGAGTCTCCTATTACA+TGG | + | chr3.3:65014404-65014423 | None:intergenic | 45.0% | |
| GCTGAGAAAGAGAACAAGGA+AGG | - | chr3.3:65015130-65015149 | MS.gene47593:intron | 45.0% | |
| GGATCCAAACCCCATGTAAT+AGG | - | chr3.3:65014390-65014409 | MS.gene47593:CDS | 45.0% | |
| GTAATAGGAGACTCGAGAGA+GGG | - | chr3.3:65014405-65014424 | MS.gene47593:intron | 45.0% | |
| GTATTATGCCAGTGGGAGTA+TGG | + | chr3.3:65013171-65013190 | None:intergenic | 45.0% | |
| GTCTCCTATTACATGGGGTT+TGG | + | chr3.3:65014397-65014416 | None:intergenic | 45.0% | |
| GTGAAACAGAGGAAGAAGAG+AGG | - | chr3.3:65014018-65014037 | MS.gene47593:intron | 45.0% | |
| TCCACATGTCAAGCTTTGCA+GGG | - | chr3.3:65014180-65014199 | MS.gene47593:intron | 45.0% | |
| TGATCCAATTCATGACCACG+GGG | - | chr3.3:65013737-65013756 | MS.gene47593:intron | 45.0% | |
| TGATGTCAACTTCGAGCCAA+GGG | + | chr3.3:65013897-65013916 | None:intergenic | 45.0% | |
| TGTAATAGGAGACTCGAGAG+AGG | - | chr3.3:65014404-65014423 | MS.gene47593:intron | 45.0% | |
| TGTTTCGCATACCTGCAAAG+AGG | + | chr3.3:65014509-65014528 | None:intergenic | 45.0% | |
| !! | GGAAAGGGTATTATGCCAGT+GGG | + | chr3.3:65013178-65013197 | None:intergenic | 45.0% |
| !! | TGGAAAGGGTATTATGCCAG+TGG | + | chr3.3:65013179-65013198 | None:intergenic | 45.0% |
| !!! | GTAAGTTTTGGGGGAAAAGC+GGG | + | chr3.3:65013140-65013159 | None:intergenic | 45.0% |
| AAGCGGTGAAGGAAACAGAG+GGG | - | chr3.3:65013848-65013867 | MS.gene47593:intron | 50.0% | |
| ACAAGGAAGGTGATACGAGG+TGG | - | chr3.3:65015143-65015162 | MS.gene47593:intron | 50.0% | |
| ATGATGTGGAGATTACGGGG+AGG | - | chr3.3:65014142-65014161 | MS.gene47593:intron | 50.0% | |
| ATTCATGACCACGGGGAATG+TGG | - | chr3.3:65013744-65013763 | MS.gene47593:intron | 50.0% | |
| CATGCAAGGTTCCTCTTTGC+AGG | - | chr3.3:65014495-65014514 | MS.gene47593:intron | 50.0% | |
| CATTCCCCGTGGTCATGAAT+TGG | + | chr3.3:65013744-65013763 | None:intergenic | 50.0% | |
| CCACATGTCAAGCTTTGCAG+GGG | - | chr3.3:65014181-65014200 | MS.gene47593:intron | 50.0% | |
| CTCCACATGTCAAGCTTTGC+AGG | - | chr3.3:65014179-65014198 | MS.gene47593:intron | 50.0% | |
| GAAGCGGTGAAGGAAACAGA+GGG | - | chr3.3:65013847-65013866 | MS.gene47593:intron | 50.0% | |
| GAGGAACCTTGCATGCATCT+TGG | + | chr3.3:65014490-65014509 | None:intergenic | 50.0% | |
| GCTAAGGACAAGGAGAGATG+AGG | - | chr3.3:65015219-65015238 | MS.gene47593:intron | 50.0% | |
| TACAAAGGCGATGGCTGCAT+TGG | + | chr3.3:65013390-65013409 | None:intergenic | 50.0% | |
| TAGAGAAGGTTGCACCAACG+TGG | - | chr3.3:65014113-65014132 | MS.gene47593:intron | 50.0% | |
| ! | TTGGTGATCGGGTGAAACAG+AGG | - | chr3.3:65014007-65014026 | MS.gene47593:intron | 50.0% |
| AACGGTTGCGTGCACTGGAA+AGG | + | chr3.3:65013194-65013213 | None:intergenic | 55.0% | |
| ACGGTTGCGTGCACTGGAAA+GGG | + | chr3.3:65013193-65013212 | None:intergenic | 55.0% | |
| CCCCTGCAAAGCTTGACATG+TGG | + | chr3.3:65014184-65014203 | None:intergenic | 55.0% | |
| CGAAGCGGTGAAGGAAACAG+AGG | - | chr3.3:65013846-65013865 | MS.gene47593:intron | 55.0% | |
| CTGGAGAGACTTCACTGGAG+AGG | + | chr3.3:65014246-65014265 | None:intergenic | 55.0% | |
| TCACTGCATGGTGCAGTCAC+TGG | - | chr3.3:65014364-65014383 | MS.gene47593:CDS | 55.0% | |
| TGCATGGTGCAGTCACTGGA+GGG | - | chr3.3:65014368-65014387 | MS.gene47593:CDS | 55.0% | |
| ! | AAGGCGATGGCTGCATTGGT+TGG | + | chr3.3:65013386-65013405 | None:intergenic | 55.0% |
| ! | AGACGTGCGAGAGTACGAGA+AGG | + | chr3.3:65013678-65013697 | None:intergenic | 55.0% |
| !! | TGTGGTGGACGTGTTGCACT+TGG | - | chr3.3:65013762-65013781 | MS.gene47593:intron | 55.0% |
| !! | TTTTGGGGGAAAAGCGGGTG+GGG | + | chr3.3:65013135-65013154 | None:intergenic | 55.0% |
| !!! | AGTTTTGGGGGAAAAGCGGG+TGG | + | chr3.3:65013137-65013156 | None:intergenic | 55.0% |
| !!! | GTTTTGGGGGAAAAGCGGGT+GGG | + | chr3.3:65013136-65013155 | None:intergenic | 55.0% |
| AAAGCGGGTGGGGGAGACAA+TGG | + | chr3.3:65013125-65013144 | None:intergenic | 60.0% | |
| AAGCGGGTGGGGGAGACAAT+GGG | + | chr3.3:65013124-65013143 | None:intergenic | 60.0% | |
| ACCAGAACGGTTGCGTGCAC+TGG | + | chr3.3:65013199-65013218 | None:intergenic | 60.0% | |
| ACTATGCAGGTGCAGCAGGG+AGG | - | chr3.3:65013630-65013649 | MS.gene47593:intron | 60.0% | |
| CATGACCACGGGGAATGTGG+TGG | - | chr3.3:65013747-65013766 | MS.gene47593:intron | 60.0% | |
| CGGTGAAGGAAACAGAGGGG+TGG | - | chr3.3:65013851-65013870 | MS.gene47593:intron | 60.0% | |
| CTGCATGGTGCAGTCACTGG+AGG | - | chr3.3:65014367-65014386 | MS.gene47593:CDS | 60.0% | |
| GCATGGTGCAGTCACTGGAG+GGG | - | chr3.3:65014369-65014388 | MS.gene47593:CDS | 60.0% | |
| GGGACTATGCAGGTGCAGCA+GGG | - | chr3.3:65013627-65013646 | MS.gene47593:intron | 60.0% | |
| TCCAGTGCACGCAACCGTTC+TGG | - | chr3.3:65013195-65013214 | MS.gene47593:CDS | 60.0% | |
| TGGGACTATGCAGGTGCAGC+AGG | - | chr3.3:65013626-65013645 | MS.gene47593:intron | 60.0% | |
| TTTGGGGGAAAAGCGGGTGG+GGG | + | chr3.3:65013134-65013153 | None:intergenic | 60.0% | |
| ! | GGAGACTCGAGAGAGGGTGT+AGG | - | chr3.3:65014411-65014430 | MS.gene47593:intron | 60.0% |
| CACGTCCACCACATTCCCCG+TGG | + | chr3.3:65013755-65013774 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 65013103 | 65015336 | 65013103 | ID=MS.gene47593 |
| chr3.3 | mRNA | 65013103 | 65015336 | 65013103 | ID=MS.gene47593.t1;Parent=MS.gene47593 |
| chr3.3 | exon | 65015223 | 65015336 | 65015223 | ID=MS.gene47593.t1.exon1;Parent=MS.gene47593.t1 |
| chr3.3 | CDS | 65015223 | 65015336 | 65015223 | ID=cds.MS.gene47593.t1;Parent=MS.gene47593.t1 |
| chr3.3 | exon | 65015010 | 65015122 | 65015010 | ID=MS.gene47593.t1.exon2;Parent=MS.gene47593.t1 |
| chr3.3 | CDS | 65015010 | 65015122 | 65015010 | ID=cds.MS.gene47593.t1;Parent=MS.gene47593.t1 |
| chr3.3 | exon | 65014497 | 65014800 | 65014497 | ID=MS.gene47593.t1.exon3;Parent=MS.gene47593.t1 |
| chr3.3 | CDS | 65014497 | 65014800 | 65014497 | ID=cds.MS.gene47593.t1;Parent=MS.gene47593.t1 |
| chr3.3 | exon | 65014189 | 65014412 | 65014189 | ID=MS.gene47593.t1.exon4;Parent=MS.gene47593.t1 |
| chr3.3 | CDS | 65014189 | 65014412 | 65014189 | ID=cds.MS.gene47593.t1;Parent=MS.gene47593.t1 |
| chr3.3 | exon | 65013923 | 65014015 | 65013923 | ID=MS.gene47593.t1.exon5;Parent=MS.gene47593.t1 |
| chr3.3 | CDS | 65013923 | 65014015 | 65013923 | ID=cds.MS.gene47593.t1;Parent=MS.gene47593.t1 |
| chr3.3 | exon | 65013103 | 65013325 | 65013103 | ID=MS.gene47593.t1.exon6;Parent=MS.gene47593.t1 |
| chr3.3 | CDS | 65013103 | 65013325 | 65013103 | ID=cds.MS.gene47593.t1;Parent=MS.gene47593.t1 |
| Gene Sequence |
| Protein sequence |
