AlfalfaGEDB | MS.gene47795

M. sativa cultivar XinJiangDaYe / MS.gene47795

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47795.t1	AES78884.2	82.6	195	22	1	1	183	1	195	9.70E-83	316.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47795.t1	Q9ZSH7	45.5	88	48	0	2	89	46	133	2.6e-15	83.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47795.t1	G7KVV7	82.6	195	22	1	1	183	1	195	7.0e-83	316.2

TFs/TRs:

Gene ID	Type	Classification
MS.gene47795.t1	TF	B3

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47795.t1	MTR_7g050590	82.564	195	22	1	1	183	1	195	2.67e-111	319
MS.gene47795.t1	MTR_7g050710	68.718	195	46	4	2	183	29	221	2.64e-88	262
MS.gene47795.t1	MTR_7g050560	70.918	196	28	4	1	183	28	207	7.62e-88	260
MS.gene47795.t1	MTR_3g098790	69.231	195	41	4	1	183	28	215	1.91e-83	249
MS.gene47795.t1	MTR_7g050580	68.984	187	46	4	1	183	28	206	1.65e-79	239
MS.gene47795.t1	MTR_7g050720	62.500	200	51	4	1	178	25	222	2.58e-79	239
MS.gene47795.t1	MTR_7g050640	69.767	86	26	0	1	86	28	113	2.96e-38	127
MS.gene47795.t1	MTR_1g108780	34.951	206	105	5	2	181	13	215	2.58e-33	123
MS.gene47795.t1	MTR_1g035460	33.023	215	109	3	1	182	1	213	5.29e-33	121
MS.gene47795.t1	MTR_8g103940	32.692	208	110	5	2	183	55	258	2.82e-31	118
MS.gene47795.t1	MTR_3g061330	31.250	176	121	0	2	177	26	201	1.12e-25	99.4
MS.gene47795.t1	MTR_5g044670	30.412	194	123	4	1	182	31	224	9.71e-25	98.6
MS.gene47795.t1	MTR_3g061320	35.955	178	106	5	2	177	26	197	5.95e-24	95.5
MS.gene47795.t1	MTR_3g061370	32.044	181	106	2	2	173	23	195	2.05e-23	94.0
MS.gene47795.t1	MTR_3g061340	50.000	84	41	1	2	84	26	109	2.53e-22	90.9
MS.gene47795.t1	MTR_3g061350	32.222	180	105	3	2	172	26	197	5.20e-22	90.5
MS.gene47795.t1	MTR_3g061290	48.193	83	43	0	2	84	26	108	7.19e-22	88.2
MS.gene47795.t1	MTR_3g061310	46.988	83	44	0	2	84	26	108	6.90e-21	87.4
MS.gene47795.t1	MTR_4g068320	39.583	96	56	1	2	97	22	115	1.33e-19	85.5
MS.gene47795.t1	MTR_1g034240	40.964	83	49	0	2	84	23	105	1.53e-19	85.1
MS.gene47795.t1	MTR_3g005440	30.894	123	83	2	2	124	36	156	1.43e-18	82.4
MS.gene47795.t1	MTR_3g005440	30.702	114	79	0	5	118	261	374	1.85e-12	65.1
MS.gene47795.t1	MTR_1g035640	31.414	191	112	5	2	183	21	201	1.88e-18	82.4
MS.gene47795.t1	MTR_3g005495	35.238	105	63	1	2	106	29	128	2.30e-18	82.0
MS.gene47795.t1	MTR_3g005495	36.893	103	63	1	2	104	259	359	2.57e-16	76.3
MS.gene47795.t1	MTR_5g070440	29.333	150	99	2	2	144	37	186	5.16e-18	79.3
MS.gene47795.t1	MTR_3g005420	33.152	184	93	6	2	181	305	462	6.54e-18	80.9
MS.gene47795.t1	MTR_3g005420	29.825	114	78	2	2	114	56	168	1.55e-14	71.2
MS.gene47795.t1	MTR_3g005480	34.884	86	56	0	2	87	37	122	7.29e-18	79.0
MS.gene47795.t1	MTR_3g005460	35.644	101	59	1	2	102	41	135	1.05e-17	80.1
MS.gene47795.t1	MTR_3g005460	35.632	87	55	1	2	87	278	364	4.47e-15	72.8
MS.gene47795.t1	MTR_3g005490	33.663	101	65	1	2	100	37	137	1.54e-17	78.2
MS.gene47795.t1	MTR_1g035570	43.373	83	45	1	2	84	21	101	4.21e-16	75.5
MS.gene47795.t1	MTR_1g050845	44.578	83	44	1	2	84	25	105	7.21e-16	75.1
MS.gene47795.t1	MTR_6g043890	34.615	104	67	1	2	104	31	134	9.44e-16	73.9
MS.gene47795.t1	MTR_1g035650	30.688	189	113	7	2	182	25	203	1.21e-15	72.0
MS.gene47795.t1	MTR_1g035520	43.182	88	47	2	1	88	87	171	4.64e-15	72.4
MS.gene47795.t1	MTR_1g035620	31.282	195	96	6	2	182	25	195	5.00e-15	72.4
MS.gene47795.t1	MTR_1g035480	44.048	84	44	2	1	84	32	112	8.76e-15	69.3
MS.gene47795.t1	MTR_1g034210	37.349	83	50	1	2	84	23	103	9.74e-15	71.2
MS.gene47795.t1	MTR_1g034210	37.349	83	50	1	2	84	23	103	1.41e-14	70.9
MS.gene47795.t1	MTR_3g005420	29.825	114	78	2	2	114	37	149	2.00e-14	70.9
MS.gene47795.t1	MTR_3g061220	38.554	83	38	1	2	84	26	95	2.22e-14	66.6
MS.gene47795.t1	MTR_1g035510	42.857	84	45	2	1	84	1	81	2.34e-14	68.9
MS.gene47795.t1	MTR_1g021320	36.000	75	48	0	2	76	198	272	1.92e-13	68.2
MS.gene47795.t1	MTR_1g021320	36.486	74	47	0	2	75	41	114	2.61e-11	62.0
MS.gene47795.t1	MTR_4g119990	40.449	89	52	1	2	89	31	119	3.52e-13	67.0
MS.gene47795.t1	MTR_1g035500	41.667	84	46	2	1	84	40	120	8.80e-13	63.9
MS.gene47795.t1	MTR_1g021440	36.000	75	48	0	2	76	38	112	1.96e-12	64.3
MS.gene47795.t1	MTR_1g021440	36.000	75	48	0	2	76	38	112	2.36e-12	64.3
MS.gene47795.t1	MTR_1g021290	34.177	79	52	0	2	80	171	249	2.94e-12	64.3
MS.gene47795.t1	MTR_1g033740	36.170	94	57	2	1	94	37	127	3.26e-12	62.4
MS.gene47795.t1	MTR_1g021440	36.000	75	48	0	2	76	38	112	3.64e-12	63.9
MS.gene47795.t1	MTR_1g021440	36.000	75	48	0	2	76	38	112	3.81e-12	63.9
MS.gene47795.t1	MTR_1g021400	32.911	79	53	0	2	80	46	124	4.49e-12	63.9
MS.gene47795.t1	MTR_1g021360	25.510	196	118	5	2	178	198	384	7.84e-12	63.2
MS.gene47795.t1	MTR_1g021410	33.766	77	51	0	2	78	38	114	8.26e-12	62.8
MS.gene47795.t1	MTR_1g021435	34.667	75	49	0	2	76	38	112	8.39e-12	63.2
MS.gene47795.t1	MTR_1g021380	36.000	75	48	0	2	76	37	111	1.03e-11	62.8
MS.gene47795.t1	MTR_1g021270	32.941	85	57	0	2	86	31	115	3.48e-11	61.2
MS.gene47795.t1	MTR_1g035470	38.202	89	52	2	1	89	1	86	3.78e-11	58.5
MS.gene47795.t1	MTR_1g021350	32.911	79	53	0	2	80	37	115	5.70e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47795.t1	AT3G18990	27.686	242	111	5	2	183	22	259	2.24e-20	87.0
MS.gene47795.t1	AT3G18990	27.686	242	111	5	2	183	22	259	4.02e-20	86.7
MS.gene47795.t1	AT4G01580	45.455	88	48	0	2	89	46	133	4.29e-20	83.6
MS.gene47795.t1	AT1G49475	40.206	97	57	1	2	98	50	145	2.28e-19	81.6
MS.gene47795.t1	AT3G18960	44.318	88	49	0	2	89	46	133	5.95e-19	80.5
MS.gene47795.t1	AT3G18960	44.318	88	49	0	2	89	46	133	8.17e-19	80.5
MS.gene47795.t1	AT3G18960	44.318	88	49	0	2	89	9	96	1.09e-18	79.3

Find 0 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTAAATTTGGTAAAAAGTGA+TGG	-	51859:247-266	MS.gene47795:CDS	20.0%
!	AGAAAGTTTGTAGAGAAATA+TGG	-	51859:169-188	MS.gene47795:CDS	25.0%
!	TAAAAAGTGATGGCAAAATA+TGG	-	51859:257-276	MS.gene47795:CDS	25.0%
!	TATTTCTCTACAAACTTTCT+TGG	+	51859:169-188	MS.gene47795:intergenic	25.0%
!	TGCAAAGTGGAAATTAAATT+TGG	-	51859:234-253	MS.gene47795:CDS	25.0%
!!	GTCTTTAGATGTATATCTTT+TGG	+	51859:205-224	MS.gene47795:intergenic	25.0%
	AAATATGGTTTGAAAAGGGT+TGG	-	51859:272-291	MS.gene47795:intron	30.0%
	AAGACACAATCTTATACCTT+TGG	+	51859:620-639	MS.gene47795:intergenic	30.0%
	AGTTGCAGCAAAAACTAATA+GGG	-	51859:423-442	MS.gene47795:CDS	30.0%
	ATACATCTAAAGACTCCAAA+TGG	-	51859:211-230	MS.gene47795:CDS	30.0%
	GAAAGGGTAATTTATCTCTA+AGG	+	51859:398-417	MS.gene47795:intergenic	30.0%
	GATATTTGAAAAGCAGAAGA+TGG	+	51859:333-352	MS.gene47795:intergenic	30.0%
	GGCAAAATATGGTTTGAAAA+GGG	-	51859:268-287	MS.gene47795:intron	30.0%
	TGCAAAATTGGAACACAATA+AGG	+	51859:705-724	MS.gene47795:intergenic	30.0%
	TGGCAAAATATGGTTTGAAA+AGG	-	51859:267-286	MS.gene47795:intron	30.0%
	TTTGTAGAGAAATATGGAGA+AGG	-	51859:175-194	MS.gene47795:CDS	30.0%
!	TATTGTGTTCCAATTTTGCA+GGG	-	51859:705-724	MS.gene47795:CDS	30.0%
!	TTATTGTGTTCCAATTTTGC+AGG	-	51859:704-723	MS.gene47795:CDS	30.0%
	AAAACTAATAGGGTCTCCAA+TGG	-	51859:433-452	MS.gene47795:CDS	35.0%
	AATTTCCACTTTGCACCATT+TGG	+	51859:229-248	MS.gene47795:intergenic	35.0%
	GAGTTGCAGCAAAAACTAAT+AGG	-	51859:422-441	MS.gene47795:intron	35.0%
	TTTCATCAACCACGTGAAAT+TGG	-	51859:526-545	MS.gene47795:CDS	35.0%
!	ATTGTGTTCCAATTTTGCAG+GGG	-	51859:706-725	MS.gene47795:CDS	35.0%
!	TAGAGCATCTCAAAAGAGAA+AGG	-	51859:489-508	MS.gene47795:CDS	35.0%
!	TAGTTTTTGCTGCAACTCTT+TGG	+	51859:420-439	MS.gene47795:intergenic	35.0%
!!	ACGTGGTTGATGAAATTCAA+AGG	+	51859:521-540	MS.gene47795:intergenic	35.0%
!!!	AGCAGTAGTTGTTTTAGAGT+TGG	-	51859:550-569	MS.gene47795:CDS	35.0%
	ACTTCTTTCCCCTGCAAAAT+TGG	+	51859:717-736	MS.gene47795:intergenic	40.0%
	AGGTTTATTTCCTGGACCAT+TGG	+	51859:452-471	MS.gene47795:intergenic	40.0%
	GCTCTACAATGTTCATGACT+TGG	+	51859:475-494	MS.gene47795:intergenic	40.0%
!	CTACAATGTTCATGACTTGG+AGG	+	51859:472-491	MS.gene47795:intergenic	40.0%
!	TGACTTGGAGGTTTATTTCC+TGG	+	51859:460-479	MS.gene47795:intergenic	40.0%
!	TTGCTGCAACTCTTTGGAAA+GGG	+	51859:414-433	MS.gene47795:intergenic	40.0%
!	TTTGCTGCAACTCTTTGGAA+AGG	+	51859:415-434	MS.gene47795:intergenic	40.0%
!!	TAGAGTTGGTAAACTGCAGA+AGG	-	51859:564-583	MS.gene47795:CDS	40.0%
	AGACTCCAAATGGTGCAAAG+TGG	-	51859:221-240	MS.gene47795:CDS	45.0%
	CATACTGACAGAGAGTCCAA+AGG	-	51859:601-620	MS.gene47795:CDS	45.0%
	CGCATGACAACAACAAAGGA+TGG	+	51859:798-817	MS.gene47795:intergenic	45.0%
	CTACTGCTTCCAATTTCACG+TGG	+	51859:538-557	MS.gene47795:intergenic	45.0%
	TGCACGCATGACAACAACAA+AGG	+	51859:802-821	MS.gene47795:intergenic	45.0%
!	GAGTATCACTCTCTAGCTCA+TGG	-	51859:307-326	MS.gene47795:intron	45.0%
	AATAGGGTCTCCAATGGTCC+AGG	-	51859:439-458	MS.gene47795:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
51859	gene	160	848	160	ID=MS.gene47795
51859	mRNA	160	848	160	ID=MS.gene47795.t1;Parent=MS.gene47795
51859	exon	423	848	423	ID=MS.gene47795.t1.exon1;Parent=MS.gene47795.t1
51859	CDS	423	848	423	ID=cds.MS.gene47795.t1;Parent=MS.gene47795.t1
51859	exon	160	282	160	ID=MS.gene47795.t1.exon2;Parent=MS.gene47795.t1
51859	CDS	160	282	160	ID=cds.MS.gene47795.t1;Parent=MS.gene47795.t1

Gene Sequence

>MS.gene47795

ATGATGCCAAGAAAGTTTGTAGAGAAATATGGAGAAGGTTTACCAAAAGATATACATCTAAAGACTCCAAATGGTGCAAAGTGGAAATTAAATTTGGTAAAAAGTGATGGCAAAATATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGAGTATCACTCTCTAGCTCATGGCCATCTTCTGCTTTTCAAATATCAAAGAAATACTCATTTTCTTGTGCACATCTTTGAAAAGAGTGCCTTAGAGATAAATTACCCTTTCCAAAGAGTTGCAGCAAAAACTAATAGGGTCTCCAATGGTCCAGGAAATAAACCTCCAAGTCATGAACATTGTAGAGCATCTCAAAAGAGAAAGGTTAACTCCTTTGAATTTCATCAACCACGTGAAATTGGAAGCAGTAGTTGTTTTAGAGTTGGTAAACTGCAGAAGGTAGCATCATTGCATCATACTGACAGAGAGTCCAAAGGTATAAGATTGTGTCTTCATTGTGTCATCAAAGTTTCAGAAGTGAACATGAAAGATGATCATGATTCATGAAATATTATCCTTATTGTGTTCCAATTTTGCAGGGGAAAGAAGTGATTACTGCTAAGAGAGTTACAGCTCTTGAAAGAGCACAATCTTTCAAAACATGTAATCCATCCTTTGTTGTTGTCATGCGTGCATCATACGTTGATCGTCATTTTCTACTG

Protein sequence

>MS.gene47795.t1

MMPRKFVEKYGEGLPKDIHLKTPNGAKWKLNLVKSDGKIWFEKGWKEFAEYHSLAHGHLLLFKYQRNTHFLVHIFEKSALEINYPFQRVAAKTNRVSNGPGNKPPSHEHCRASQKRKVNSFEFHQPREIGSSSCFRVGKLQKGKEVITAKRVTALERAQSFKTCNPSFVVVMRASYVDRHFLL