Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47796.t1 | XP_003622663.1 | 82.6 | 316 | 53 | 2 | 1 | 315 | 1 | 315 | 1.30E-146 | 529.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47796.t1 | Q8L3W1 | 27.4 | 340 | 176 | 7 | 13 | 290 | 6 | 336 | 6.6e-27 | 122.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47796.t1 | G7KVV4 | 82.6 | 316 | 53 | 2 | 1 | 315 | 1 | 315 | 9.1e-147 | 529.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene47796.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47796.t1 | MTR_7g050560 | 82.595 | 316 | 53 | 2 | 1 | 315 | 1 | 315 | 0.0 | 540 |
| MS.gene47796.t1 | MTR_7g050580 | 67.576 | 330 | 77 | 4 | 1 | 315 | 1 | 315 | 5.95e-156 | 439 |
| MS.gene47796.t1 | MTR_7g050590 | 72.449 | 294 | 62 | 3 | 28 | 303 | 1 | 293 | 3.43e-154 | 434 |
| MS.gene47796.t1 | MTR_3g098790 | 65.831 | 319 | 86 | 4 | 1 | 303 | 1 | 312 | 2.73e-148 | 420 |
| MS.gene47796.t1 | MTR_7g050710 | 66.355 | 321 | 89 | 4 | 1 | 303 | 1 | 320 | 3.94e-147 | 417 |
| MS.gene47796.t1 | MTR_7g050720 | 60.000 | 320 | 97 | 7 | 1 | 292 | 1 | 317 | 7.78e-126 | 362 |
| MS.gene47796.t1 | MTR_8g103940 | 38.111 | 307 | 151 | 9 | 11 | 290 | 37 | 331 | 2.66e-53 | 182 |
| MS.gene47796.t1 | MTR_1g035460 | 37.124 | 299 | 140 | 8 | 28 | 290 | 1 | 287 | 2.50e-52 | 177 |
| MS.gene47796.t1 | MTR_1g108780 | 35.616 | 292 | 144 | 10 | 29 | 290 | 13 | 290 | 2.39e-49 | 171 |
| MS.gene47796.t1 | MTR_3g061320 | 37.037 | 297 | 144 | 10 | 10 | 289 | 9 | 279 | 1.91e-46 | 158 |
| MS.gene47796.t1 | MTR_7g050640 | 64.602 | 113 | 40 | 0 | 1 | 113 | 1 | 113 | 7.39e-46 | 151 |
| MS.gene47796.t1 | MTR_3g061370 | 34.333 | 300 | 151 | 10 | 11 | 289 | 7 | 281 | 1.95e-41 | 145 |
| MS.gene47796.t1 | MTR_3g061350 | 33.887 | 301 | 170 | 11 | 1 | 289 | 1 | 284 | 8.17e-41 | 144 |
| MS.gene47796.t1 | MTR_5g044670 | 30.392 | 306 | 183 | 8 | 13 | 298 | 16 | 311 | 2.30e-40 | 144 |
| MS.gene47796.t1 | MTR_3g061340 | 33.910 | 289 | 159 | 9 | 10 | 289 | 9 | 274 | 1.89e-39 | 140 |
| MS.gene47796.t1 | MTR_3g061310 | 32.993 | 294 | 166 | 10 | 10 | 289 | 9 | 285 | 8.26e-38 | 136 |
| MS.gene47796.t1 | MTR_3g061330 | 54.902 | 102 | 44 | 1 | 10 | 111 | 9 | 108 | 2.46e-32 | 120 |
| MS.gene47796.t1 | MTR_4g119990 | 30.345 | 290 | 173 | 7 | 11 | 276 | 13 | 297 | 2.40e-31 | 121 |
| MS.gene47796.t1 | MTR_6g043890 | 30.345 | 290 | 167 | 9 | 11 | 276 | 13 | 291 | 1.41e-30 | 118 |
| MS.gene47796.t1 | MTR_1g035620 | 28.674 | 279 | 192 | 5 | 10 | 288 | 6 | 277 | 1.42e-30 | 119 |
| MS.gene47796.t1 | MTR_1g035570 | 31.959 | 291 | 173 | 8 | 13 | 290 | 9 | 287 | 1.74e-30 | 119 |
| MS.gene47796.t1 | MTR_3g061290 | 53.922 | 102 | 45 | 1 | 10 | 111 | 9 | 108 | 1.10e-29 | 112 |
| MS.gene47796.t1 | MTR_3g005490 | 26.846 | 298 | 161 | 7 | 5 | 293 | 13 | 262 | 4.01e-29 | 112 |
| MS.gene47796.t1 | MTR_3g005480 | 28.521 | 284 | 159 | 8 | 13 | 293 | 21 | 263 | 1.38e-28 | 111 |
| MS.gene47796.t1 | MTR_1g035640 | 31.333 | 300 | 172 | 11 | 13 | 298 | 9 | 288 | 5.09e-28 | 113 |
| MS.gene47796.t1 | MTR_1g050845 | 27.972 | 286 | 173 | 4 | 10 | 288 | 6 | 265 | 7.77e-28 | 114 |
| MS.gene47796.t1 | MTR_5g070440 | 26.552 | 290 | 181 | 6 | 5 | 293 | 13 | 271 | 1.36e-27 | 108 |
| MS.gene47796.t1 | MTR_1g021360 | 27.820 | 266 | 175 | 5 | 26 | 277 | 195 | 457 | 7.66e-25 | 104 |
| MS.gene47796.t1 | MTR_3g061220 | 45.946 | 111 | 44 | 3 | 1 | 111 | 1 | 95 | 1.00e-24 | 96.7 |
| MS.gene47796.t1 | MTR_3g005420 | 27.660 | 282 | 172 | 7 | 13 | 293 | 289 | 539 | 1.84e-24 | 103 |
| MS.gene47796.t1 | MTR_3g005420 | 24.561 | 285 | 144 | 8 | 3 | 277 | 30 | 253 | 1.31e-15 | 77.8 |
| MS.gene47796.t1 | MTR_6g061070 | 26.791 | 321 | 186 | 12 | 7 | 289 | 12 | 321 | 4.54e-23 | 99.4 |
| MS.gene47796.t1 | MTR_1g021410 | 24.923 | 325 | 190 | 7 | 14 | 289 | 23 | 342 | 2.82e-22 | 95.9 |
| MS.gene47796.t1 | MTR_3g005460 | 25.685 | 292 | 177 | 9 | 11 | 293 | 260 | 520 | 1.33e-21 | 95.5 |
| MS.gene47796.t1 | MTR_3g005460 | 24.151 | 265 | 148 | 5 | 13 | 277 | 25 | 236 | 3.81e-19 | 88.2 |
| MS.gene47796.t1 | MTR_3g005495 | 30.189 | 265 | 139 | 7 | 13 | 277 | 243 | 461 | 5.15e-21 | 93.6 |
| MS.gene47796.t1 | MTR_3g005495 | 38.372 | 86 | 53 | 0 | 29 | 114 | 29 | 114 | 5.99e-17 | 81.6 |
| MS.gene47796.t1 | MTR_4g068320 | 33.333 | 159 | 102 | 2 | 13 | 167 | 6 | 164 | 1.00e-20 | 92.4 |
| MS.gene47796.t1 | MTR_4g068320 | 30.303 | 132 | 86 | 2 | 164 | 295 | 268 | 393 | 7.39e-14 | 72.0 |
| MS.gene47796.t1 | MTR_1g035650 | 30.317 | 221 | 106 | 5 | 10 | 205 | 6 | 203 | 1.79e-20 | 88.2 |
| MS.gene47796.t1 | MTR_1g034240 | 41.414 | 99 | 58 | 0 | 13 | 111 | 7 | 105 | 5.34e-20 | 90.1 |
| MS.gene47796.t1 | MTR_1g034240 | 28.667 | 150 | 97 | 3 | 164 | 309 | 272 | 415 | 5.62e-13 | 69.3 |
| MS.gene47796.t1 | MTR_1g021400 | 25.000 | 336 | 199 | 9 | 11 | 296 | 28 | 360 | 5.56e-20 | 89.7 |
| MS.gene47796.t1 | MTR_1g021435 | 25.392 | 319 | 175 | 7 | 29 | 288 | 38 | 352 | 1.21e-18 | 85.9 |
| MS.gene47796.t1 | MTR_1g035480 | 35.714 | 140 | 79 | 3 | 9 | 148 | 13 | 141 | 2.68e-18 | 81.6 |
| MS.gene47796.t1 | MTR_1g021380 | 24.233 | 326 | 186 | 8 | 16 | 291 | 20 | 334 | 6.36e-18 | 83.6 |
| MS.gene47796.t1 | MTR_1g035440 | 38.889 | 108 | 59 | 2 | 11 | 114 | 13 | 117 | 1.35e-16 | 78.2 |
| MS.gene47796.t1 | MTR_1g033740 | 34.286 | 140 | 80 | 3 | 9 | 148 | 18 | 145 | 3.85e-16 | 75.9 |
| MS.gene47796.t1 | MTR_1g035500 | 32.278 | 158 | 94 | 4 | 7 | 164 | 19 | 163 | 8.93e-16 | 74.7 |
| MS.gene47796.t1 | MTR_1g034210 | 38.384 | 99 | 59 | 1 | 13 | 111 | 7 | 103 | 1.27e-15 | 76.6 |
| MS.gene47796.t1 | MTR_3g005420 | 24.561 | 285 | 144 | 8 | 3 | 277 | 11 | 234 | 1.35e-15 | 77.4 |
| MS.gene47796.t1 | MTR_1g034210 | 38.384 | 99 | 59 | 1 | 13 | 111 | 7 | 103 | 1.82e-15 | 76.6 |
| MS.gene47796.t1 | MTR_3g005440 | 36.364 | 88 | 56 | 0 | 27 | 114 | 34 | 121 | 2.30e-15 | 76.6 |
| MS.gene47796.t1 | MTR_3g005440 | 33.028 | 109 | 72 | 1 | 7 | 114 | 235 | 343 | 7.28e-13 | 69.3 |
| MS.gene47796.t1 | MTR_1g035510 | 34.884 | 129 | 69 | 4 | 28 | 156 | 1 | 114 | 7.98e-14 | 70.1 |
| MS.gene47796.t1 | MTR_1g035520 | 26.190 | 294 | 164 | 11 | 28 | 277 | 87 | 371 | 1.53e-13 | 70.9 |
| MS.gene47796.t1 | MTR_1g021350 | 25.000 | 304 | 183 | 11 | 14 | 282 | 22 | 315 | 2.42e-13 | 70.1 |
| MS.gene47796.t1 | MTR_1g035470 | 35.659 | 129 | 69 | 5 | 28 | 156 | 1 | 115 | 1.68e-12 | 64.3 |
| MS.gene47796.t1 | MTR_1g021440 | 37.179 | 78 | 49 | 0 | 26 | 103 | 35 | 112 | 8.99e-12 | 65.1 |
| MS.gene47796.t1 | MTR_1g021440 | 37.179 | 78 | 49 | 0 | 26 | 103 | 35 | 112 | 1.04e-11 | 65.1 |
| MS.gene47796.t1 | MTR_1g021440 | 37.179 | 78 | 49 | 0 | 26 | 103 | 35 | 112 | 1.49e-11 | 65.1 |
| MS.gene47796.t1 | MTR_1g021440 | 37.179 | 78 | 49 | 0 | 26 | 103 | 35 | 112 | 1.53e-11 | 65.1 |
| MS.gene47796.t1 | MTR_1g035490 | 34.711 | 121 | 72 | 4 | 172 | 290 | 81 | 196 | 1.59e-11 | 64.7 |
| MS.gene47796.t1 | MTR_1g021320 | 28.188 | 149 | 98 | 2 | 11 | 153 | 23 | 168 | 6.98e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47796.t1 | AT4G01580 | 41.739 | 115 | 67 | 0 | 2 | 116 | 19 | 133 | 1.48e-23 | 95.9 |
| MS.gene47796.t1 | AT1G49475 | 38.636 | 132 | 76 | 3 | 6 | 133 | 25 | 155 | 8.73e-23 | 94.0 |
| MS.gene47796.t1 | AT3G18990 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 3.07e-22 | 95.5 |
| MS.gene47796.t1 | AT3G18960 | 40.000 | 115 | 69 | 0 | 2 | 116 | 19 | 133 | 4.27e-22 | 92.0 |
| MS.gene47796.t1 | AT3G18990 | 43.434 | 99 | 56 | 0 | 13 | 111 | 6 | 104 | 4.98e-22 | 95.5 |
| MS.gene47796.t1 | AT3G18990 | 28.481 | 158 | 104 | 4 | 136 | 293 | 191 | 339 | 3.15e-11 | 63.9 |
| MS.gene47796.t1 | AT3G18960 | 40.000 | 115 | 69 | 0 | 2 | 116 | 19 | 133 | 5.18e-22 | 92.4 |
| MS.gene47796.t1 | AT3G18960 | 45.455 | 88 | 48 | 0 | 29 | 116 | 9 | 96 | 1.37e-17 | 79.3 |
| MS.gene47796.t1 | AT1G49480 | 30.709 | 127 | 81 | 3 | 164 | 290 | 102 | 221 | 1.21e-11 | 63.9 |
| MS.gene47796.t1 | AT1G49480 | 30.709 | 127 | 81 | 3 | 164 | 290 | 102 | 221 | 1.21e-11 | 63.9 |
| MS.gene47796.t1 | AT1G49480 | 30.709 | 127 | 81 | 3 | 164 | 290 | 102 | 221 | 1.21e-11 | 63.9 |
Find 0 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAGGAAAAATAAA+AGG | + | 51859:5309-5328 | MS.gene47796:intergenic | 10.0% |
| !! | AACAAAAGCTAATAATTTAT+AGG | + | 51859:6740-6759 | MS.gene47796:intergenic | 15.0% |
| !! | GATATATTATAATAACAAAG+TGG | - | 51859:7344-7363 | MS.gene47796:intron | 15.0% |
| !! | TAAAATAAAAAAATAACACG+TGG | - | 51859:6551-6570 | MS.gene47796:CDS | 15.0% |
| !! | TAATTAAAAAAAAATGCACA+TGG | - | 51859:5452-5471 | MS.gene47796:intron | 15.0% |
| !! | TCAGAAAGAAATAAAAATTA+AGG | + | 51859:5321-5340 | MS.gene47796:intergenic | 15.0% |
| !! | TTCACAAGTTAATATAAATT+AGG | - | 51859:6403-6422 | MS.gene47796:intron | 15.0% |
| !! | TTTGATTAGATAACTATATA+AGG | - | 51859:7375-7394 | MS.gene47796:intron | 15.0% |
| !!! | AAAAAAAATTTTCTTCAAAG+GGG | - | 51859:5504-5523 | MS.gene47796:intron | 15.0% |
| !!! | GAAAAAAAATTTTCTTCAAA+GGG | - | 51859:5503-5522 | MS.gene47796:intron | 15.0% |
| !!! | TATTTTATTTTTTTTGCCTT+GGG | + | 51859:6538-6557 | MS.gene47796:intergenic | 15.0% |
| !!! | TTATTTTATTTTTTTTGCCT+TGG | + | 51859:6539-6558 | MS.gene47796:intergenic | 15.0% |
| !!! | TTTTGTAGTTTTTTTTCTTA+GGG | - | 51859:6664-6683 | MS.gene47796:CDS | 15.0% |
| !! | AAAAGGATAATTTATCTCTA+AGG | + | 51859:6190-6209 | MS.gene47796:intergenic | 20.0% |
| !! | AACTATCATATGTGTATTTA+TGG | + | 51859:5658-5677 | MS.gene47796:intergenic | 20.0% |
| !! | ACTATCATATGTGTATTTAT+GGG | + | 51859:5657-5676 | MS.gene47796:intergenic | 20.0% |
| !! | CAAGTATTATCTTGAAAAAA+CGG | + | 51859:5000-5019 | MS.gene47796:intergenic | 20.0% |
| !! | GAAAAATAAAAGGTTCAAAT+TGG | + | 51859:5299-5318 | MS.gene47796:intergenic | 20.0% |
| !! | TGAAAACTAAGTTATTATTG+TGG | - | 51859:5855-5874 | MS.gene47796:intron | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | 51859:6026-6045 | MS.gene47796:intron | 20.0% |
| !! | TTAAATTTGGTAAATAGTGA+TGG | - | 51859:6039-6058 | MS.gene47796:intron | 20.0% |
| !!! | AATAACTTAGTTTTCAAATC+TGG | + | 51859:5851-5870 | MS.gene47796:intergenic | 20.0% |
| !!! | ATTTTATTTTTTTTGCCTTG+GGG | + | 51859:6537-6556 | MS.gene47796:intergenic | 20.0% |
| !!! | GCATATGAGTTTTATATTTA+GGG | - | 51859:5481-5500 | MS.gene47796:intron | 20.0% |
| !!! | GGAAAAAAAATTTTCTTCAA+AGG | - | 51859:5502-5521 | MS.gene47796:intron | 20.0% |
| !!! | GTTTTGTAGTTTTTTTTCTT+AGG | - | 51859:6663-6682 | MS.gene47796:CDS | 20.0% |
| !!! | TGCATATGAGTTTTATATTT+AGG | - | 51859:5480-5499 | MS.gene47796:intron | 20.0% |
| !!! | TTTGTAGTTTTTTTTCTTAG+GGG | - | 51859:6665-6684 | MS.gene47796:CDS | 20.0% |
| !!! | TTTTGTAGTTTTTTTTTAGG+AGG | + | 51859:6477-6496 | MS.gene47796:intergenic | 20.0% |
| ! | AAAAAGTTTGTGGAGAAATA+TGG | - | 51859:5961-5980 | MS.gene47796:CDS | 25.0% |
| ! | AAGAGAAATATCTAAGTCAA+AGG | + | 51859:5054-5073 | MS.gene47796:intergenic | 25.0% |
| ! | AGAAACATTCACAAAACTAT+GGG | - | 51859:5766-5785 | MS.gene47796:intron | 25.0% |
| ! | ATATATCTAAAGACTCCAAA+TGG | - | 51859:6003-6022 | MS.gene47796:CDS | 25.0% |
| ! | ATTATCTTGAAAAAACGGAT+TGG | + | 51859:4995-5014 | MS.gene47796:intergenic | 25.0% |
| ! | CACATATGATAGTTATCTAT+CGG | - | 51859:5664-5683 | MS.gene47796:intron | 25.0% |
| ! | CTATCATATGTGTATTTATG+GGG | + | 51859:5656-5675 | MS.gene47796:intergenic | 25.0% |
| ! | TAAATAGTGATGGCAAAATA+TGG | - | 51859:6049-6068 | MS.gene47796:intron | 25.0% |
| ! | TAAGAATAATGAATCGAGTT+TGG | - | 51859:5536-5555 | MS.gene47796:intron | 25.0% |
| ! | TCTATGTGATGATATCTTAA+TGG | + | 51859:7304-7323 | MS.gene47796:intergenic | 25.0% |
| ! | TCTCTAGTATTACTAGATTA+AGG | - | 51859:7035-7054 | MS.gene47796:intron | 25.0% |
| ! | TGCAAAATTTGAACACAATA+AGG | + | 51859:6824-6843 | MS.gene47796:intergenic | 25.0% |
| ! | TGTTAACATAAATCTTTAGC+AGG | - | 51859:6756-6775 | MS.gene47796:CDS | 25.0% |
| ! | TGTTAGAAGTTAATTAGTAG+AGG | - | 51859:7142-7161 | MS.gene47796:intron | 25.0% |
| !! | TATCAATTTCTCTTCCATTT+TGG | + | 51859:5407-5426 | MS.gene47796:intergenic | 25.0% |
| !! | TGAAAAAACTTCTCTTTTTG+AGG | - | 51859:6143-6162 | MS.gene47796:intron | 25.0% |
| !! | TTATTGTGTTCAAATTTTGC+AGG | - | 51859:6823-6842 | MS.gene47796:CDS | 25.0% |
| !! | TTTTGTGAATGTTTCTCTTT+AGG | + | 51859:5762-5781 | MS.gene47796:intergenic | 25.0% |
| !!! | CGGTTTTGTAGTTTTTTTTT+AGG | + | 51859:6480-6499 | MS.gene47796:intergenic | 25.0% |
| !!! | CTATCGGATGTAATTTTTTT+GGG | - | 51859:5680-5699 | MS.gene47796:intron | 25.0% |
| !!! | TATTTCTCCACAAACTTTTT+TGG | + | 51859:5961-5980 | MS.gene47796:intergenic | 25.0% |
| !!! | TCTATCGGATGTAATTTTTT+TGG | - | 51859:5679-5698 | MS.gene47796:intron | 25.0% |
| !!! | TTGTAGTTTTTTTTCTTAGG+GGG | - | 51859:6666-6685 | MS.gene47796:CDS | 25.0% |
| !!! | TTTTATTTTTTTTGCCTTGG+GGG | + | 51859:6536-6555 | MS.gene47796:intergenic | 25.0% |
| AAACCAGCAAGTAATTAACT+TGG | - | 51859:5346-5365 | MS.gene47796:CDS | 30.0% | |
| AAATATGGTTTGAAAAGGGT+TGG | - | 51859:6064-6083 | MS.gene47796:intron | 30.0% | |
| AACCAGCAAGTAATTAACTT+GGG | - | 51859:5347-5366 | MS.gene47796:CDS | 30.0% | |
| AAGATTGTCACAAGATTTGT+TGG | - | 51859:5220-5239 | MS.gene47796:CDS | 30.0% | |
| ATATAAATGCCATCTAACAG+GGG | - | 51859:5424-5443 | MS.gene47796:intron | 30.0% | |
| ATCATCACATAGATGTTTAC+TGG | - | 51859:7311-7330 | MS.gene47796:intron | 30.0% | |
| ATTATAAATCCCCTGTTAGA+TGG | + | 51859:5436-5455 | MS.gene47796:intergenic | 30.0% | |
| ATTGGACAAGAATGACATAT+TGG | - | 51859:5377-5396 | MS.gene47796:intron | 30.0% | |
| ATTTGTAGCCTAATGAAACT+AGG | - | 51859:5595-5614 | MS.gene47796:intron | 30.0% | |
| CTACTCTAATTATCCTTAGT+TGG | + | 51859:7113-7132 | MS.gene47796:intergenic | 30.0% | |
| CTAGTAATACTAGAGAGATT+TGG | + | 51859:7031-7050 | MS.gene47796:intergenic | 30.0% | |
| GAGAAACATTCACAAAACTA+TGG | - | 51859:5765-5784 | MS.gene47796:intron | 30.0% | |
| GAGGACAATAACTTGAAAAT+TGG | - | 51859:7668-7687 | MS.gene47796:intron | 30.0% | |
| GATATAAATGCCATCTAACA+GGG | - | 51859:5423-5442 | MS.gene47796:intron | 30.0% | |
| GATGATACCAAAAAAGTTTG+TGG | - | 51859:5951-5970 | MS.gene47796:CDS | 30.0% | |
| GGCAAAATATGGTTTGAAAA+GGG | - | 51859:6060-6079 | MS.gene47796:intron | 30.0% | |
| GTAAGTTGCAAAGAAACATT+TGG | - | 51859:6967-6986 | MS.gene47796:intron | 30.0% | |
| GTTTCATTAGGCTACAAATT+TGG | + | 51859:5594-5613 | MS.gene47796:intergenic | 30.0% | |
| TATTTGCAGGTGTTAAATGA+AGG | - | 51859:7563-7582 | MS.gene47796:intron | 30.0% | |
| TCTAAAGATGTGAACAATGT+AGG | + | 51859:7735-7754 | MS.gene47796:intergenic | 30.0% | |
| TGAAGTTGAGAAATTGCAAA+AGG | - | 51859:6308-6327 | MS.gene47796:intron | 30.0% | |
| TGATATAAATGCCATCTAAC+AGG | - | 51859:5422-5441 | MS.gene47796:intron | 30.0% | |
| TGGCAAAATATGGTTTGAAA+AGG | - | 51859:6059-6078 | MS.gene47796:intron | 30.0% | |
| TGGTAATAGACACTTTGATT+TGG | - | 51859:7520-7539 | MS.gene47796:intron | 30.0% | |
| TTGAGTTAGATTCTTTGTTC+AGG | - | 51859:5090-5109 | MS.gene47796:CDS | 30.0% | |
| TTTGTAGCCTAATGAAACTA+GGG | - | 51859:5596-5615 | MS.gene47796:intron | 30.0% | |
| ! | AAGTTAATTACTTGCTGGTT+TGG | + | 51859:5347-5366 | MS.gene47796:intergenic | 30.0% |
| ! | AATTTCCATTTTGCACCATT+TGG | + | 51859:6021-6040 | MS.gene47796:intergenic | 30.0% |
| ! | ATCGTAACTTTAGGAAAGTT+AGG | - | 51859:6694-6713 | MS.gene47796:CDS | 30.0% |
| ! | ATTAACTTGGGGTAAGATAT+TGG | - | 51859:5359-5378 | MS.gene47796:intron | 30.0% |
| ! | ATTTGTTGGTCATAGTTTGT+GGG | - | 51859:5234-5253 | MS.gene47796:CDS | 30.0% |
| ! | CATTTGTCTTTTCCTTTGAT+TGG | - | 51859:7477-7496 | MS.gene47796:intron | 30.0% |
| ! | CTTTCCTAAAGTTACGATTT+TGG | + | 51859:6692-6711 | MS.gene47796:intergenic | 30.0% |
| ! | TCGTAACTTTAGGAAAGTTA+GGG | - | 51859:6695-6714 | MS.gene47796:CDS | 30.0% |
| ! | TTATATCACGCATACTGATT+TGG | - | 51859:5915-5934 | MS.gene47796:CDS | 30.0% |
| !!! | TTTATTTTTTTTGCCTTGGG+GGG | + | 51859:6535-6554 | MS.gene47796:intergenic | 30.0% |
| AGAAGCTTCTTCTTTCACTT+GGG | + | 51859:7887-7906 | MS.gene47796:intergenic | 35.0% | |
| AGGTGTTAAATGAAGGAGTT+TGG | - | 51859:7570-7589 | MS.gene47796:intron | 35.0% | |
| AGTGTTCAACTTCTCAAAGT+AGG | - | 51859:7777-7796 | MS.gene47796:intron | 35.0% | |
| CTACAGTTGCAAAACTTAAG+GGG | + | 51859:6503-6522 | MS.gene47796:intergenic | 35.0% | |
| GACACAAAATTGTATACCTC+TGG | + | 51859:6364-6383 | MS.gene47796:intergenic | 35.0% | |
| GACATATTGGACTACCAAAA+TGG | - | 51859:5390-5409 | MS.gene47796:intron | 35.0% | |
| GCTACAGTTGCAAAACTTAA+GGG | + | 51859:6504-6523 | MS.gene47796:intergenic | 35.0% | |
| TACCACAAGTGCAAAACTTA+GGG | - | 51859:6636-6655 | MS.gene47796:CDS | 35.0% | |
| TCATTAGGCTACAAATTTGG+TGG | + | 51859:5591-5610 | MS.gene47796:intergenic | 35.0% | |
| TCCATCATAAAACACATTCG+TGG | + | 51859:5563-5582 | MS.gene47796:intergenic | 35.0% | |
| TGCAACTTACCAGAAGAAAA+CGG | + | 51859:6957-6976 | MS.gene47796:intergenic | 35.0% | |
| TGCTACAGTTGCAAAACTTA+AGG | + | 51859:6505-6524 | MS.gene47796:intergenic | 35.0% | |
| TGGTATATTCTGCCAATCAA+AGG | + | 51859:7492-7511 | MS.gene47796:intergenic | 35.0% | |
| TGTAGCCTGTTTACTCAATT+CGG | - | 51859:5793-5812 | MS.gene47796:intron | 35.0% | |
| TGTCTATTACCAAAAATGCG+TGG | + | 51859:7512-7531 | MS.gene47796:intergenic | 35.0% | |
| TTTGTGGAGAAATATGGAGA+GGG | - | 51859:5967-5986 | MS.gene47796:CDS | 35.0% | |
| ! | ACCAGCAAGTAATTAACTTG+GGG | - | 51859:5348-5367 | MS.gene47796:CDS | 35.0% |
| ! | CAGAATATACCACGCATTTT+TGG | - | 51859:7500-7519 | MS.gene47796:intron | 35.0% |
| ! | CATATCTGAAAAGCACAAGA+TGG | + | 51859:6125-6144 | MS.gene47796:intergenic | 35.0% |
| ! | CGTAACTTTAGGAAAGTTAG+GGG | - | 51859:6696-6715 | MS.gene47796:CDS | 35.0% |
| ! | GTAACTTTAGGAAAGTTAGG+GGG | - | 51859:6697-6716 | MS.gene47796:CDS | 35.0% |
| ! | TCCACGAATGTGTTTTATGA+TGG | - | 51859:5559-5578 | MS.gene47796:intron | 35.0% |
| ! | TTAGCTGCAACTCTTTGAAA+AGG | + | 51859:6207-6226 | MS.gene47796:intergenic | 35.0% |
| ! | TTTTGCAACTGTAGCAGTTT+TGG | - | 51859:6509-6528 | MS.gene47796:intron | 35.0% |
| !! | ACTTAGTTTTCAAATCTGGC+CGG | + | 51859:5847-5866 | MS.gene47796:intergenic | 35.0% |
| !! | GATTTGTTGGTCATAGTTTG+TGG | - | 51859:5233-5252 | MS.gene47796:CDS | 35.0% |
| !! | TGGTTGATGGAATTCAAAAG+AGG | + | 51859:6262-6281 | MS.gene47796:intergenic | 35.0% |
| !! | TTTGATTTGGATCAGAAGAG+AGG | - | 51859:7533-7552 | MS.gene47796:intron | 35.0% |
| !! | TTTTTGGGAAAACACACATC+CGG | - | 51859:5695-5714 | MS.gene47796:intron | 35.0% |
| ACATTCACAAAACTATGGGC+TGG | - | 51859:5770-5789 | MS.gene47796:intron | 40.0% | |
| ACCACAAGTGCAAAACTTAG+GGG | - | 51859:6637-6656 | MS.gene47796:CDS | 40.0% | |
| ACCCCAAGTTAATTACTTGC+TGG | + | 51859:5352-5371 | MS.gene47796:intergenic | 40.0% | |
| ACCGAGTCAAAATTGACCTT+GGG | - | 51859:6604-6623 | MS.gene47796:CDS | 40.0% | |
| AGAAACGCCCTAGTTTCATT+AGG | + | 51859:5606-5625 | MS.gene47796:intergenic | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | 51859:6013-6032 | MS.gene47796:CDS | 40.0% | |
| ATCCTGATTAGGTACTTTGC+AGG | + | 51859:7596-7615 | MS.gene47796:intergenic | 40.0% | |
| ATCGCAACTTCGTGAAAGTT+AGG | + | 51859:6449-6468 | MS.gene47796:intergenic | 40.0% | |
| CAAAAATTGCCCAGCTCAAA+TGG | - | 51859:7261-7280 | MS.gene47796:intron | 40.0% | |
| CTACCACAAGTGCAAAACTT+AGG | - | 51859:6635-6654 | MS.gene47796:CDS | 40.0% | |
| CTTGCTCAAAATCTTCATGC+AGG | - | 51859:5016-5035 | MS.gene47796:intron | 40.0% | |
| GACTATGTATGCACCAACTA+AGG | - | 51859:7097-7116 | MS.gene47796:intron | 40.0% | |
| GAGAAGCTTCTTCTTTCACT+TGG | + | 51859:7888-7907 | MS.gene47796:intergenic | 40.0% | |
| GAGAGGAGATGTTTATTTGC+AGG | - | 51859:7550-7569 | MS.gene47796:intron | 40.0% | |
| GTGAAAGAAGAAGCTTCTCA+AGG | - | 51859:7889-7908 | MS.gene47796:CDS | 40.0% | |
| GTTTGTGGAGAAATATGGAG+AGG | - | 51859:5966-5985 | MS.gene47796:CDS | 40.0% | |
| TATTTCCCCTTGATACCAGT+TGG | - | 51859:7227-7246 | MS.gene47796:intron | 40.0% | |
| TCAAAGAGTTGCAGCTAAAG+AGG | - | 51859:6209-6228 | MS.gene47796:intron | 40.0% | |
| TCGCAACTTCGTGAAAGTTA+GGG | + | 51859:6448-6467 | MS.gene47796:intergenic | 40.0% | |
| TCTAACATGTGGTCCTGTAA+GGG | + | 51859:7621-7640 | MS.gene47796:intergenic | 40.0% | |
| TTCCATCAACCACGTGAAAT+AGG | - | 51859:6270-6289 | MS.gene47796:intron | 40.0% | |
| TTCCTATTTCACGTGGTTGA+TGG | + | 51859:6275-6294 | MS.gene47796:intergenic | 40.0% | |
| TTTACTCAATTCGGTCCACT+TGG | - | 51859:5802-5821 | MS.gene47796:intron | 40.0% | |
| ! | AAACTAGGGCGTTTCTCTTT+AGG | - | 51859:5610-5629 | MS.gene47796:intron | 40.0% |
| ! | CGTTAAACACCGTTTTCTTC+TGG | - | 51859:6945-6964 | MS.gene47796:intron | 40.0% |
| ! | CTTTCACGAAGTTGCGATTT+TGG | - | 51859:6451-6470 | MS.gene47796:intron | 40.0% |
| ! | TGGGCAATTTTTGCTCAACA+AGG | + | 51859:7254-7273 | MS.gene47796:intergenic | 40.0% |
| !! | TTGGCTTGGACAAGTTAGTT+CGG | - | 51859:5821-5840 | MS.gene47796:intron | 40.0% |
| AAATTGCCCAGCTCAAATGG+AGG | - | 51859:7264-7283 | MS.gene47796:intron | 45.0% | |
| AAGGACCAACTGGTATCAAG+GGG | + | 51859:7235-7254 | MS.gene47796:intergenic | 45.0% | |
| AATTGCCCAGCTCAAATGGA+GGG | - | 51859:7265-7284 | MS.gene47796:intron | 45.0% | |
| ACAAGGACCAACTGGTATCA+AGG | + | 51859:7237-7256 | MS.gene47796:intergenic | 45.0% | |
| ACTTTGCATCATGCTGACAG+AGG | - | 51859:6336-6355 | MS.gene47796:intron | 45.0% | |
| ATGGGGCCTTAGAGATATTG+AGG | + | 51859:5639-5658 | MS.gene47796:intergenic | 45.0% | |
| ATGTTAGACTCTCAGGTGGA+TGG | - | 51859:7633-7652 | MS.gene47796:intron | 45.0% | |
| CAAGGACCAACTGGTATCAA+GGG | + | 51859:7236-7255 | MS.gene47796:intergenic | 45.0% | |
| CAGTTGCAAAACTTAAGGGG+CGG | + | 51859:6500-6519 | MS.gene47796:intergenic | 45.0% | |
| CCACAAGTGCAAAACTTAGG+GGG | - | 51859:6638-6657 | MS.gene47796:CDS | 45.0% | |
| CCACGTGAAATAGGAAGCAA+TGG | - | 51859:6279-6298 | MS.gene47796:intron | 45.0% | |
| CCATTGCTTCCTATTTCACG+TGG | + | 51859:6282-6301 | MS.gene47796:intergenic | 45.0% | |
| CCGAGTCAAAATTGACCTTG+GGG | - | 51859:6605-6624 | MS.gene47796:CDS | 45.0% | |
| CCTAAATACACATCCGGTAC+CGG | + | 51859:5717-5736 | MS.gene47796:intergenic | 45.0% | |
| CGAGTCAAAATTGACCTTGG+GGG | - | 51859:6606-6625 | MS.gene47796:CDS | 45.0% | |
| CGCAACTTCGTGAAAGTTAG+GGG | + | 51859:6447-6466 | MS.gene47796:intergenic | 45.0% | |
| CGCATGACAACAAGAAAGGA+TGG | + | 51859:6916-6935 | MS.gene47796:intergenic | 45.0% | |
| CTAATCAGGATGACCCTTAC+AGG | - | 51859:7605-7624 | MS.gene47796:intron | 45.0% | |
| CTGTAAGGGTCATCCTGATT+AGG | + | 51859:7607-7626 | MS.gene47796:intergenic | 45.0% | |
| CTTTGCATCATGCTGACAGA+GGG | - | 51859:6337-6356 | MS.gene47796:intron | 45.0% | |
| GACCGAGTCAAAATTGACCT+TGG | - | 51859:6603-6622 | MS.gene47796:CDS | 45.0% | |
| GACTCATCTATGTCGCTACA+TGG | - | 51859:5273-5292 | MS.gene47796:CDS | 45.0% | |
| GAGTATCATTCTCGAGCTCA+TGG | - | 51859:6099-6118 | MS.gene47796:intron | 45.0% | |
| GCAACTTCGTGAAAGTTAGG+GGG | + | 51859:6446-6465 | MS.gene47796:intergenic | 45.0% | |
| GGGGCCAAAATCGTAACTTT+AGG | - | 51859:6685-6704 | MS.gene47796:CDS | 45.0% | |
| GTACCGGATGTGTATTTAGG+GGG | - | 51859:5717-5736 | MS.gene47796:intron | 45.0% | |
| GTCTAACATGTGGTCCTGTA+AGG | + | 51859:7622-7641 | MS.gene47796:intergenic | 45.0% | |
| GTGGACCGAATTGAGTAAAC+AGG | + | 51859:5801-5820 | MS.gene47796:intergenic | 45.0% | |
| TACCGGATGTGTATTTAGGG+GGG | - | 51859:5718-5737 | MS.gene47796:intron | 45.0% | |
| TAGAACCCTCCATTTGAGCT+GGG | + | 51859:7273-7292 | MS.gene47796:intergenic | 45.0% | |
| TGCACGCATGACAACAAGAA+AGG | + | 51859:6920-6939 | MS.gene47796:intergenic | 45.0% | |
| TGGGGCCTTAGAGATATTGA+GGG | + | 51859:5638-5657 | MS.gene47796:intergenic | 45.0% | |
| TTAGAACCCTCCATTTGAGC+TGG | + | 51859:7274-7293 | MS.gene47796:intergenic | 45.0% | |
| TTTGCTCAACAAGGACCAAC+TGG | + | 51859:7245-7264 | MS.gene47796:intergenic | 45.0% | |
| ! | ACTAACTTGTCCAAGCCAAG+TGG | + | 51859:5820-5839 | MS.gene47796:intergenic | 45.0% |
| ! | CGGTACCGGATGTGTATTTA+GGG | - | 51859:5715-5734 | MS.gene47796:intron | 45.0% |
| ! | GGTACCGGATGTGTATTTAG+GGG | - | 51859:5716-5735 | MS.gene47796:intron | 45.0% |
| ! | GTTGGTCATAGTTTGTGGGT+TGG | - | 51859:5238-5257 | MS.gene47796:CDS | 45.0% |
| ! | TAGGGGGGGTTAGTGATATT+GGG | - | 51859:5733-5752 | MS.gene47796:intron | 45.0% |
| ! | TTAGGGGGGGTTAGTGATAT+TGG | - | 51859:5732-5751 | MS.gene47796:intron | 45.0% |
| !! | AAACGGATTGGCTTCAACTC+AGG | + | 51859:4983-5002 | MS.gene47796:intergenic | 45.0% |
| !! | GTTGCAGCTAAAGAGGTATC+TGG | - | 51859:6216-6235 | MS.gene47796:intron | 45.0% |
| !!! | CCCCAAGGTCAATTTTGACT+CGG | + | 51859:6608-6627 | MS.gene47796:intergenic | 45.0% |
| AACACGTGGCACCTCACTTA+GGG | - | 51859:6565-6584 | MS.gene47796:CDS | 50.0% | |
| ACCCCCCCTAAATACACATC+CGG | + | 51859:5723-5742 | MS.gene47796:intergenic | 50.0% | |
| ACCGGATGTGTATTTAGGGG+GGG | - | 51859:5719-5738 | MS.gene47796:intron | 50.0% | |
| AGGCCCCCTCAATATCTCTA+AGG | - | 51859:5630-5649 | MS.gene47796:intron | 50.0% | |
| CAAGTGCAAAACTTAGGGGG+CGG | - | 51859:6641-6660 | MS.gene47796:CDS | 50.0% | |
| CCACATGTTAGACTCTCAGG+TGG | - | 51859:7629-7648 | MS.gene47796:intron | 50.0% | |
| CCACCTGAGAGTCTAACATG+TGG | + | 51859:7632-7651 | MS.gene47796:intergenic | 50.0% | |
| CTTGGACAAGTTAGTTCGGC+CGG | - | 51859:5825-5844 | MS.gene47796:intron | 50.0% | |
| GGAAAACACACATCCGGTAC+CGG | - | 51859:5701-5720 | MS.gene47796:intron | 50.0% | |
| GGACCACATGTTAGACTCTC+AGG | - | 51859:7626-7645 | MS.gene47796:intron | 50.0% | |
| GGGCCTTAGAGATATTGAGG+GGG | + | 51859:5636-5655 | MS.gene47796:intergenic | 50.0% | |
| GGGGCCTTAGAGATATTGAG+GGG | + | 51859:5637-5656 | MS.gene47796:intergenic | 50.0% | |
| TAACACGTGGCACCTCACTT+AGG | - | 51859:6564-6583 | MS.gene47796:CDS | 50.0% | |
| TAGACTCTCAGGTGGATGGA+AGG | - | 51859:7637-7656 | MS.gene47796:intron | 50.0% | |
| TCAATTCGGTCCACTTGGCT+TGG | - | 51859:5807-5826 | MS.gene47796:intron | 50.0% | |
| ! | AGGGGGGGTTAGTGATATTG+GGG | - | 51859:5734-5753 | MS.gene47796:intron | 50.0% |
| ! | CCCCCTAAGTTTTGCACTTG+TGG | + | 51859:6641-6660 | MS.gene47796:intergenic | 50.0% |
| ! | CCGGTACCGGATGTGTATTT+AGG | - | 51859:5714-5733 | MS.gene47796:intron | 50.0% |
| ! | GGCCTGCAAAGTACCTAATC+AGG | - | 51859:7591-7610 | MS.gene47796:intron | 50.0% |
| !! | TGGATGGAAGGCATTTGCAG+AGG | - | 51859:7649-7668 | MS.gene47796:intron | 50.0% |
| !!! | TGTGGTAGTTTTGACCCCCA+AGG | + | 51859:6623-6642 | MS.gene47796:intergenic | 50.0% |
| CCTACGTGGTTCCCTAAGTG+AGG | + | 51859:6579-6598 | MS.gene47796:intergenic | 55.0% | |
| CCTCACTTAGGGAACCACGT+AGG | - | 51859:6576-6595 | MS.gene47796:CDS | 55.0% | |
| ! | GGGGGGGTTAGTGATATTGG+GGG | - | 51859:5735-5754 | MS.gene47796:intron | 55.0% |
| ! | GGGGGGTTAGTGATATTGGG+GGG | - | 51859:5736-5755 | MS.gene47796:intron | 55.0% |
| CATGCTGACAGAGGGTCCAG+AGG | - | 51859:6345-6364 | MS.gene47796:intron | 60.0% | |
| !! | GTAGCAGTTTTGGCCCCCCA+AGG | - | 51859:6519-6538 | MS.gene47796:CDS | 60.0% |
| !! | TGACTCGGTCTACGCCTACG+TGG | + | 51859:6593-6612 | MS.gene47796:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51859 | gene | 4965 | 7915 | 4965 | ID=MS.gene47796 |
| 51859 | mRNA | 4965 | 7915 | 4965 | ID=MS.gene47796.t1;Parent=MS.gene47796 |
| 51859 | exon | 7835 | 7915 | 7835 | ID=MS.gene47796.t1.exon1;Parent=MS.gene47796.t1 |
| 51859 | CDS | 7835 | 7915 | 7835 | ID=cds.MS.gene47796.t1;Parent=MS.gene47796.t1 |
| 51859 | exon | 6514 | 6928 | 6514 | ID=MS.gene47796.t1.exon2;Parent=MS.gene47796.t1 |
| 51859 | CDS | 6514 | 6928 | 6514 | ID=cds.MS.gene47796.t1;Parent=MS.gene47796.t1 |
| 51859 | exon | 5914 | 6035 | 5914 | ID=MS.gene47796.t1.exon3;Parent=MS.gene47796.t1 |
| 51859 | CDS | 5914 | 6035 | 5914 | ID=cds.MS.gene47796.t1;Parent=MS.gene47796.t1 |
| 51859 | exon | 5086 | 5377 | 5086 | ID=MS.gene47796.t1.exon4;Parent=MS.gene47796.t1 |
| 51859 | CDS | 5086 | 5377 | 5086 | ID=cds.MS.gene47796.t1;Parent=MS.gene47796.t1 |
| 51859 | exon | 4965 | 5002 | 4965 | ID=MS.gene47796.t1.exon5;Parent=MS.gene47796.t1 |
| 51859 | CDS | 4965 | 5002 | 4965 | ID=cds.MS.gene47796.t1;Parent=MS.gene47796.t1 |
| Gene Sequence |
| Protein sequence |
