AlfalfaGEDB | MS.gene47810

M. sativa cultivar XinJiangDaYe / MS.gene47810

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47810.t1	XP_024632959.1	68.1	426	34	4	1	420	1	330	4.90E-146	527.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47810.t1	Q9SIJ0	26.5	181	99	4	13	190	116	265	6.5e-06	53.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47810.t1	A0A396JGH2	68.1	426	34	4	1	420	1	330	3.5e-146	527.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene47810.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47810.t1	MTR_6g081160	40.780	282	88	7	208	420	1	272	2.12e-53	179
MS.gene47810.t1	MTR_6g081160	66.667	60	16	1	20	75	1	60	1.87e-16	79.3
MS.gene47810.t1	MTR_6g081160	64.062	64	18	2	114	172	1	64	4.56e-16	78.2
MS.gene47810.t1	MTR_5g098470	31.429	175	80	5	224	378	55	209	1.33e-13	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47810.t1	AT5G56200	38.542	96	45	2	233	328	79	160	9.70e-13	70.1
MS.gene47810.t1	AT2G26940	37.143	105	61	1	233	332	49	153	8.20e-12	65.9
MS.gene47810.t1	AT1G02030	24.911	281	95	8	41	255	1	231	7.01e-11	63.2

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Find 80 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCCTTTCTCAATACA+AGG	0.568454	2.1:-3400787	MS.gene47810:CDS
AAAAGTTCTTGTCATAACGA+AGG	0.694153	2.1:+3400479	None:intergenic
AAAGTGTATTGGTAGTGTTG+AGG	0.694754	2.1:-3400521	MS.gene47810:CDS
AAATAATACTATGGCTAGTT+TGG	0.292025	2.1:-3401046	MS.gene47810:CDS
AACTACCTTGTATTGAGAGA+GGG	0.509993	2.1:+3401346	None:intergenic
AAGCAGCCAAAGAAAGGAAA+AGG	0.495623	2.1:-3400391	MS.gene47810:CDS
AAGCGATGAAGATGATGCTA+AGG	0.582770	2.1:-3400944	MS.gene47810:CDS
AAGTGATGAAGATGATGCTA+AGG	0.616457	2.1:-3401226	MS.gene47810:CDS
AATACAAGGAAATAATACTA+TGG	0.401260	2.1:-3401055	MS.gene47810:CDS
AATACAAGGTAGTAATAATA+GGG	0.421996	2.1:-3400773	MS.gene47810:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTTCTTGTCATAACGA+AGG	+	chr2.1:3401466-3401485	None:intergenic	30.0%
ACTCAATCATCATCAACAAA+AGG	-	chr2.1:3401130-3401149	MS.gene47810:CDS	30.0%
ACTTAATCATCGTTCACAAA+AGG	-	chr2.1:3400566-3400585	MS.gene47810:CDS	30.0%
ACTTCATCATGATTCACAAA+AGG	-	chr2.1:3400848-3400867	MS.gene47810:CDS	30.0%
ATGGATAAAGATCATAAGCA+TGG	-	chr2.1:3400351-3400370	MS.gene47810:CDS	30.0%
ATTTCCTTGTATTGAGAAAG+GGG	+	chr2.1:3400880-3400899	None:intergenic	30.0%
CATAAAGAAGATCAAGATGA+TGG	-	chr2.1:3401353-3401372	MS.gene47810:CDS	30.0%
GATGATGAAGAAGAAATTGA+TGG	-	chr2.1:3401209-3401228	MS.gene47810:CDS	30.0%
GTGATTTATCTTTGCCAAAA+TGG	-	chr2.1:3401375-3401394	MS.gene47810:CDS	30.0%
TACTACCTTGTATTGAGAAA+GGG	+	chr2.1:3401163-3401182	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	3400351	3401613	3400351	ID=MS.gene47810
chr2.1	mRNA	3400351	3401613	3400351	ID=MS.gene47810.t1;Parent=MS.gene47810
chr2.1	exon	3400351	3401613	3400351	ID=MS.gene47810.t1.exon1;Parent=MS.gene47810.t1
chr2.1	CDS	3400351	3401613	3400351	ID=cds.MS.gene47810.t1;Parent=MS.gene47810.t1

Gene Sequence

>MS.gene47810

ATGGATAAAGATCATAAGCATGGTTATGAGAAAACCTATGAAGATTCGGAAAAGAGGATGAAAAGGTCTTCATGTTCACTATCTAGTGATGAAGATGATGCTAAGGATGAGGTTTCTGTTCAAGAATCTACACATCAGTGCAATGTTTGTGGGAAAACTTTTAGCAATGGAAAAGCATTGGGTGGTCACCGGAGATCTCACTTTCTTAAGAAGAAACTTAATCATCGTTCACAAAAGGTACAAACCCCTCTCTCAATACAAGGTAGTTATAATAGGGCTAGTTTTGATAAAGATAGTAAGCATGGTTTTGAGAACACCCGTGAAGAGTCTGAAAAGAGGATAAAGAGGTCTTTTAGTTCTCTATCAAGTGATGAAGATGATGCTAAGGATGAGGTTTCTATTCAAGAATCTACACATCAATGCAATGTTTGTGGAAAAACTTTTAGCAACGGAAAAGCATTGGGTGGTCACCGAAGATCTCACTTCCTTAAGCAGAAACTTCATCATGATTCACAAAAGGTTGATACCCCTTTCTCAATACAAGGAAATAATACTATGGCTAGTTTGGATAAAGATCATAAGCATGATCATGAGGATACCTATGAAGAGTCAGAAAAGAGGGTGAAAAGGTCAGCTTGTTCTCTATCAAGCGATGAAGATGATGCTAAGGATGAGGTTTCTGTTCAAGAATCTACACATCAGTGCAATGTTTGTGGAAAAACTTTTAGTAACGGAAAAGCATTGGGTGGTCACCGGAGATCTCACTTTCTTAAGAAGAAACTCAATCATCATCAACAAAAGGTGAAAACCCCTTTCTCAATACAAGGTAGTAATAATAGGGCTAGTTTTGATGATTATGATGATGAAGAAGAAATTGATGGCATAGAGAAACCAACTTGTTCTCTCTGCAAAAAGAAGTTTCCAACCATGAATGCTTTGTATGGTCACATGAGGACTCACCGGAATAGAGATTTTAAAGGACTTAATCCTCCCACTGAATATCATAAAGAAGATCAAGATGATGGTGATTTATCTTTGCCAAAATGGCAGAAGAGAGATAGAAGAGGTAGAAAGTGTATTGGTAGTGTTGAGGCGGCTGCAAATCTTTTGCACCTTCGTTATGACAAGAACTTTTGTGTTGGTGAAACATCAAATGGGAATGGCAAGAATGAGCTGGGCAGTGATAGAAACAGCAGTGATAAGCAGCCAAAGAAAGGAAAAGGTTTATTTGATTTGAATGAGTCGTATGTTATAGAGGACTAA

Protein sequence

>MS.gene47810.t1

MDKDHKHGYEKTYEDSEKRMKRSSCSLSSDEDDAKDEVSVQESTHQCNVCGKTFSNGKALGGHRRSHFLKKKLNHRSQKVQTPLSIQGSYNRASFDKDSKHGFENTREESEKRIKRSFSSLSSDEDDAKDEVSIQESTHQCNVCGKTFSNGKALGGHRRSHFLKQKLHHDSQKVDTPFSIQGNNTMASLDKDHKHDHEDTYEESEKRVKRSACSLSSDEDDAKDEVSVQESTHQCNVCGKTFSNGKALGGHRRSHFLKKKLNHHQQKVKTPFSIQGSNNRASFDDYDDEEEIDGIEKPTCSLCKKKFPTMNALYGHMRTHRNRDFKGLNPPTEYHKEDQDDGDLSLPKWQKRDRRGRKCIGSVEAAANLLHLRYDKNFCVGETSNGNGKNELGSDRNSSDKQPKKGKGLFDLNESYVIED