Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47810.t1 | XP_024632959.1 | 68.1 | 426 | 34 | 4 | 1 | 420 | 1 | 330 | 4.90E-146 | 527.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47810.t1 | Q9SIJ0 | 26.5 | 181 | 99 | 4 | 13 | 190 | 116 | 265 | 6.5e-06 | 53.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47810.t1 | A0A396JGH2 | 68.1 | 426 | 34 | 4 | 1 | 420 | 1 | 330 | 3.5e-146 | 527.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene47810.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47810.t1 | MTR_6g081160 | 40.780 | 282 | 88 | 7 | 208 | 420 | 1 | 272 | 2.12e-53 | 179 |
| MS.gene47810.t1 | MTR_6g081160 | 66.667 | 60 | 16 | 1 | 20 | 75 | 1 | 60 | 1.87e-16 | 79.3 |
| MS.gene47810.t1 | MTR_6g081160 | 64.062 | 64 | 18 | 2 | 114 | 172 | 1 | 64 | 4.56e-16 | 78.2 |
| MS.gene47810.t1 | MTR_5g098470 | 31.429 | 175 | 80 | 5 | 224 | 378 | 55 | 209 | 1.33e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47810.t1 | AT5G56200 | 38.542 | 96 | 45 | 2 | 233 | 328 | 79 | 160 | 9.70e-13 | 70.1 |
| MS.gene47810.t1 | AT2G26940 | 37.143 | 105 | 61 | 1 | 233 | 332 | 49 | 153 | 8.20e-12 | 65.9 |
| MS.gene47810.t1 | AT1G02030 | 24.911 | 281 | 95 | 8 | 41 | 255 | 1 | 231 | 7.01e-11 | 63.2 |
Find 80 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCTCTCTTCTGCCATTT+TGG | 0.136557 | 2.1:+3400553 | None:intergenic |
| CAATACAAGGTAGTTATAAT+AGG | 0.224337 | 2.1:-3401338 | MS.gene47810:CDS |
| CAATACAAGGTAGTAATAAT+AGG | 0.229853 | 2.1:-3400774 | MS.gene47810:CDS |
| AAATAATACTATGGCTAGTT+TGG | 0.292025 | 2.1:-3401046 | MS.gene47810:CDS |
| GTGATTTATCTTTGCCAAAA+TGG | 0.304193 | 2.1:-3400567 | MS.gene47810:CDS |
| GTCCTTTAAAATCTCTATTC+CGG | 0.308881 | 2.1:+3400632 | None:intergenic |
| CATGATGAAGTTTCTGCTTA+AGG | 0.329845 | 2.1:+3401106 | None:intergenic |
| AATACAAGGAAATAATACTA+TGG | 0.401260 | 2.1:-3401055 | MS.gene47810:CDS |
| GTGACCATACAAAGCATTCA+TGG | 0.407800 | 2.1:+3400666 | None:intergenic |
| CCAACCATGAATGCTTTGTA+TGG | 0.410676 | 2.1:-3400670 | MS.gene47810:CDS |
| AATACAAGGTAGTAATAATA+GGG | 0.421996 | 2.1:-3400773 | MS.gene47810:CDS |
| TTACTACCTTGTATTGAGAA+AGG | 0.427202 | 2.1:+3400781 | None:intergenic |
| TACTACCTTGTATTGAGAAA+GGG | 0.428907 | 2.1:+3400782 | None:intergenic |
| AATACAAGGTAGTTATAATA+GGG | 0.431054 | 2.1:-3401337 | MS.gene47810:CDS |
| ACACATCAGTGCAATGTTTG+TGG | 0.442286 | 2.1:-3400898 | MS.gene47810:CDS |
| TTTAGCAATGGAAAAGCATT+GGG | 0.444822 | 2.1:-3401432 | MS.gene47810:CDS |
| ACACATCAATGCAATGTTTG+TGG | 0.453484 | 2.1:-3401180 | MS.gene47810:CDS |
| TTTAGTAACGGAAAAGCATT+GGG | 0.453684 | 2.1:-3400868 | MS.gene47810:CDS |
| ATTCGGAAAAGAGGATGAAA+AGG | 0.459648 | 2.1:-3401548 | MS.gene47810:CDS |
| TGAGAAAACCTATGAAGATT+CGG | 0.461549 | 2.1:-3401565 | MS.gene47810:CDS |
| TTTAGCAACGGAAAAGCATT+GGG | 0.462037 | 2.1:-3401150 | MS.gene47810:CDS |
| TTATTTCCTTGTATTGAGAA+AGG | 0.466446 | 2.1:+3401063 | None:intergenic |
| TGTGTTGGTGAAACATCAAA+TGG | 0.466991 | 2.1:-3400457 | MS.gene47810:CDS |
| TATTTCCTTGTATTGAGAAA+GGG | 0.470601 | 2.1:+3401064 | None:intergenic |
| AGTCAGAAAAGAGGGTGAAA+AGG | 0.473192 | 2.1:-3400984 | MS.gene47810:CDS |
| GAATGAGTCGTATGTTATAG+AGG | 0.473597 | 2.1:-3400356 | MS.gene47810:CDS |
| GATGATGAAGAAGAAATTGA+TGG | 0.474180 | 2.1:-3400733 | MS.gene47810:CDS |
| ACACATCAGTGCAATGTTTG+TGG | 0.475496 | 2.1:-3401462 | MS.gene47810:CDS |
| AGAAGAGGTAGAAAGTGTAT+TGG | 0.483023 | 2.1:-3400532 | MS.gene47810:CDS |
| CACATCAGTGCAATGTTTGT+GGG | 0.483344 | 2.1:-3401461 | MS.gene47810:CDS |
| AGTCTGAAAAGAGGATAAAG+AGG | 0.489348 | 2.1:-3401266 | MS.gene47810:CDS |
| AGTGATAAGCAGCCAAAGAA+AGG | 0.491245 | 2.1:-3400397 | MS.gene47810:CDS |
| TTTGATAAAGATAGTAAGCA+TGG | 0.491925 | 2.1:-3401309 | MS.gene47810:CDS |
| AAGCAGCCAAAGAAAGGAAA+AGG | 0.495623 | 2.1:-3400391 | MS.gene47810:CDS |
| GATACCCCTTTCTCAATACA+AGG | 0.503509 | 2.1:-3401069 | MS.gene47810:CDS |
| ACTTCATCATGATTCACAAA+AGG | 0.507116 | 2.1:-3401094 | MS.gene47810:CDS |
| ACTCAATCATCATCAACAAA+AGG | 0.509294 | 2.1:-3400812 | MS.gene47810:CDS |
| AACTACCTTGTATTGAGAGA+GGG | 0.509993 | 2.1:+3401346 | None:intergenic |
| CCTATGAAGATTCGGAAAAG+AGG | 0.512041 | 2.1:-3401557 | MS.gene47810:CDS |
| ACTTAATCATCGTTCACAAA+AGG | 0.517591 | 2.1:-3401376 | MS.gene47810:CDS |
| CATAAAGAAGATCAAGATGA+TGG | 0.521149 | 2.1:-3400589 | MS.gene47810:CDS |
| GCTTAAGGAAGTGAGATCTT+CGG | 0.523012 | 2.1:+3401121 | None:intergenic |
| CAAACCCCTCTCTCAATACA+AGG | 0.526964 | 2.1:-3401351 | MS.gene47810:CDS |
| TGGGAATGGCAAGAATGAGC+TGG | 0.528852 | 2.1:-3400437 | MS.gene47810:CDS |
| TCTTAAGAAAGTGAGATCTC+CGG | 0.549197 | 2.1:+3400839 | None:intergenic |
| TCTTAAGAAAGTGAGATCTC+CGG | 0.549197 | 2.1:+3401403 | None:intergenic |
| CCCGTGAAGAGTCTGAAAAG+AGG | 0.549764 | 2.1:-3401275 | MS.gene47810:CDS |
| ATTTCCTTGTATTGAGAAAG+GGG | 0.553284 | 2.1:+3401065 | None:intergenic |
| GAAAAGCATTGGGTGGTCAC+CGG | 0.556634 | 2.1:-3401422 | MS.gene47810:CDS |
| GAAAAGCATTGGGTGGTCAC+CGG | 0.560535 | 2.1:-3400858 | MS.gene47810:CDS |
| ACTACCTTGTATTGAGAAAG+GGG | 0.563148 | 2.1:+3400783 | None:intergenic |
| AAAACCCCTTTCTCAATACA+AGG | 0.568454 | 2.1:-3400787 | MS.gene47810:CDS |
| CCATACAAAGCATTCATGGT+TGG | 0.569961 | 2.1:+3400670 | None:intergenic |
| CTATGAAGAGTCAGAAAAGA+GGG | 0.570873 | 2.1:-3400992 | MS.gene47810:CDS |
| ATCTTCTTTATGATATTCAG+TGG | 0.577502 | 2.1:+3400600 | None:intergenic |
| CCTATGAAGAGTCAGAAAAG+AGG | 0.578028 | 2.1:-3400993 | MS.gene47810:CDS |
| TCTTTATGATATTCAGTGGG+AGG | 0.578179 | 2.1:+3400604 | None:intergenic |
| TGGCAGAAGAGAGATAGAAG+AGG | 0.582371 | 2.1:-3400547 | MS.gene47810:CDS |
| AAGCGATGAAGATGATGCTA+AGG | 0.582770 | 2.1:-3400944 | MS.gene47810:CDS |
| GGGAATGGCAAGAATGAGCT+GGG | 0.589572 | 2.1:-3400436 | MS.gene47810:CDS |
| TGAAGATGATGCTAAGGATG+AGG | 0.590398 | 2.1:-3400938 | MS.gene47810:CDS |
| ACTACCTTGTATTGAGAGAG+GGG | 0.593179 | 2.1:+3401347 | None:intergenic |
| GTGTTGGTGAAACATCAAAT+GGG | 0.595282 | 2.1:-3400456 | MS.gene47810:CDS |
| TAACTACCTTGTATTGAGAG+AGG | 0.601425 | 2.1:+3401345 | None:intergenic |
| TCTTCTTTATGATATTCAGT+GGG | 0.603725 | 2.1:+3400601 | None:intergenic |
| TAGTGATGAAGATGATGCTA+AGG | 0.613974 | 2.1:-3401508 | MS.gene47810:CDS |
| AGCAATGGAAAAGCATTGGG+TGG | 0.615604 | 2.1:-3401429 | MS.gene47810:CDS |
| AAGTGATGAAGATGATGCTA+AGG | 0.616457 | 2.1:-3401226 | MS.gene47810:CDS |
| ATGGATAAAGATCATAAGCA+TGG | 0.623190 | 2.1:-3401591 | MS.gene47810:CDS |
| ATGGTCACATGAGGACTCAC+CGG | 0.623316 | 2.1:-3400651 | MS.gene47810:CDS |
| AGCAACGGAAAAGCATTGGG+TGG | 0.623901 | 2.1:-3401147 | MS.gene47810:CDS |
| AGATCATAAGCATGATCATG+AGG | 0.630396 | 2.1:-3401019 | MS.gene47810:CDS |
| GGTGAAACATCAAATGGGAA+TGG | 0.636070 | 2.1:-3400451 | MS.gene47810:CDS |
| TGAAGATGATGCTAAGGATG+AGG | 0.644459 | 2.1:-3401220 | MS.gene47810:CDS |
| TGAAGATGATGCTAAGGATG+AGG | 0.644459 | 2.1:-3401502 | MS.gene47810:CDS |
| AGTAACGGAAAAGCATTGGG+TGG | 0.649033 | 2.1:-3400865 | MS.gene47810:CDS |
| GTGTATTGGTAGTGTTGAGG+CGG | 0.666307 | 2.1:-3400518 | MS.gene47810:CDS |
| AAAAGTTCTTGTCATAACGA+AGG | 0.694153 | 2.1:+3400479 | None:intergenic |
| AAAGTGTATTGGTAGTGTTG+AGG | 0.694754 | 2.1:-3400521 | MS.gene47810:CDS |
| ATGCTTTGTATGGTCACATG+AGG | 0.725028 | 2.1:-3400660 | MS.gene47810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACAAGGAAATAATACTA+TGG | - | chr2.1:3400887-3400906 | MS.gene47810:CDS | 20.0% |
| !! | AATACAAGGTAGTAATAATA+GGG | - | chr2.1:3401169-3401188 | MS.gene47810:CDS | 20.0% |
| !! | AATACAAGGTAGTTATAATA+GGG | - | chr2.1:3400605-3400624 | MS.gene47810:CDS | 20.0% |
| ! | ATCTTCTTTATGATATTCAG+TGG | + | chr2.1:3401345-3401364 | None:intergenic | 25.0% |
| ! | CAATACAAGGTAGTAATAAT+AGG | - | chr2.1:3401168-3401187 | MS.gene47810:CDS | 25.0% |
| ! | CAATACAAGGTAGTTATAAT+AGG | - | chr2.1:3400604-3400623 | MS.gene47810:CDS | 25.0% |
| ! | TATTTCCTTGTATTGAGAAA+GGG | + | chr2.1:3400881-3400900 | None:intergenic | 25.0% |
| ! | TCTTCTTTATGATATTCAGT+GGG | + | chr2.1:3401344-3401363 | None:intergenic | 25.0% |
| ! | TTATTTCCTTGTATTGAGAA+AGG | + | chr2.1:3400882-3400901 | None:intergenic | 25.0% |
| ! | TTTGATAAAGATAGTAAGCA+TGG | - | chr2.1:3400633-3400652 | MS.gene47810:CDS | 25.0% |
| !! | AAATAATACTATGGCTAGTT+TGG | - | chr2.1:3400896-3400915 | MS.gene47810:CDS | 25.0% |
| !! | AATAAACCTTTTCCTTTCTT+TGG | + | chr2.1:3401560-3401579 | None:intergenic | 25.0% |
| !! | TGTGGAAAAACTTTTAGTAA+CGG | - | chr2.1:3401062-3401081 | MS.gene47810:CDS | 25.0% |
| AAAAGTTCTTGTCATAACGA+AGG | + | chr2.1:3401466-3401485 | None:intergenic | 30.0% | |
| ACTCAATCATCATCAACAAA+AGG | - | chr2.1:3401130-3401149 | MS.gene47810:CDS | 30.0% | |
| ACTTAATCATCGTTCACAAA+AGG | - | chr2.1:3400566-3400585 | MS.gene47810:CDS | 30.0% | |
| ACTTCATCATGATTCACAAA+AGG | - | chr2.1:3400848-3400867 | MS.gene47810:CDS | 30.0% | |
| ATGGATAAAGATCATAAGCA+TGG | - | chr2.1:3400351-3400370 | MS.gene47810:CDS | 30.0% | |
| ATTTCCTTGTATTGAGAAAG+GGG | + | chr2.1:3400880-3400899 | None:intergenic | 30.0% | |
| CATAAAGAAGATCAAGATGA+TGG | - | chr2.1:3401353-3401372 | MS.gene47810:CDS | 30.0% | |
| GATGATGAAGAAGAAATTGA+TGG | - | chr2.1:3401209-3401228 | MS.gene47810:CDS | 30.0% | |
| GTGATTTATCTTTGCCAAAA+TGG | - | chr2.1:3401375-3401394 | MS.gene47810:CDS | 30.0% | |
| TACTACCTTGTATTGAGAAA+GGG | + | chr2.1:3401163-3401182 | None:intergenic | 30.0% | |
| TGAGAAAACCTATGAAGATT+CGG | - | chr2.1:3400377-3400396 | MS.gene47810:CDS | 30.0% | |
| TTACTACCTTGTATTGAGAA+AGG | + | chr2.1:3401164-3401183 | None:intergenic | 30.0% | |
| ! | TATGACAAGAACTTTTGTGT+TGG | - | chr2.1:3401470-3401489 | MS.gene47810:CDS | 30.0% |
| ! | TGTGGAAAAACTTTTAGCAA+CGG | - | chr2.1:3400780-3400799 | MS.gene47810:CDS | 30.0% |
| !! | GTCCTTTAAAATCTCTATTC+CGG | + | chr2.1:3401313-3401332 | None:intergenic | 30.0% |
| !! | TTTAGCAATGGAAAAGCATT+GGG | - | chr2.1:3400510-3400529 | MS.gene47810:CDS | 30.0% |
| !! | TTTAGTAACGGAAAAGCATT+GGG | - | chr2.1:3401074-3401093 | MS.gene47810:CDS | 30.0% |
| !! | TTTTAGCAATGGAAAAGCAT+TGG | - | chr2.1:3400509-3400528 | MS.gene47810:CDS | 30.0% |
| !! | TTTTAGTAACGGAAAAGCAT+TGG | - | chr2.1:3401073-3401092 | MS.gene47810:CDS | 30.0% |
| AAAACCCCTTTCTCAATACA+AGG | - | chr2.1:3401155-3401174 | MS.gene47810:CDS | 35.0% | |
| AACTACCTTGTATTGAGAGA+GGG | + | chr2.1:3400599-3400618 | None:intergenic | 35.0% | |
| AAGTGATGAAGATGATGCTA+AGG | - | chr2.1:3400716-3400735 | MS.gene47810:CDS | 35.0% | |
| ACACATCAATGCAATGTTTG+TGG | - | chr2.1:3400762-3400781 | MS.gene47810:CDS | 35.0% | |
| ACTACCTTGTATTGAGAAAG+GGG | + | chr2.1:3401162-3401181 | None:intergenic | 35.0% | |
| AGATCATAAGCATGATCATG+AGG | - | chr2.1:3400923-3400942 | MS.gene47810:CDS | 35.0% | |
| AGTCTGAAAAGAGGATAAAG+AGG | - | chr2.1:3400676-3400695 | MS.gene47810:CDS | 35.0% | |
| ATTCGGAAAAGAGGATGAAA+AGG | - | chr2.1:3400394-3400413 | MS.gene47810:CDS | 35.0% | |
| CATGATGAAGTTTCTGCTTA+AGG | + | chr2.1:3400839-3400858 | None:intergenic | 35.0% | |
| CTATGAAGAGTCAGAAAAGA+GGG | - | chr2.1:3400950-3400969 | MS.gene47810:CDS | 35.0% | |
| GAATGAGTCGTATGTTATAG+AGG | - | chr2.1:3401586-3401605 | MS.gene47810:CDS | 35.0% | |
| TAACTACCTTGTATTGAGAG+AGG | + | chr2.1:3400600-3400619 | None:intergenic | 35.0% | |
| TAGTGATGAAGATGATGCTA+AGG | - | chr2.1:3400434-3400453 | MS.gene47810:CDS | 35.0% | |
| TCTTAAGAAAGTGAGATCTC+CGG | + | chr2.1:3400542-3400561 | None:intergenic | 35.0% | |
| TCTTTATGATATTCAGTGGG+AGG | + | chr2.1:3401341-3401360 | None:intergenic | 35.0% | |
| ! | AGAAGAGGTAGAAAGTGTAT+TGG | - | chr2.1:3401410-3401429 | MS.gene47810:CDS | 35.0% |
| ! | CACCGGAATAGAGATTTTAA+AGG | - | chr2.1:3401308-3401327 | MS.gene47810:CDS | 35.0% |
| ! | GTGTTGGTGAAACATCAAAT+GGG | - | chr2.1:3401486-3401505 | MS.gene47810:CDS | 35.0% |
| ! | TGTGGGAAAACTTTTAGCAA+TGG | - | chr2.1:3400498-3400517 | MS.gene47810:CDS | 35.0% |
| ! | TGTGTTGGTGAAACATCAAA+TGG | - | chr2.1:3401485-3401504 | MS.gene47810:CDS | 35.0% |
| ! | TTTTTGCAGAGAGAACAAGT+TGG | + | chr2.1:3401245-3401264 | None:intergenic | 35.0% |
| !! | AAAGTGTATTGGTAGTGTTG+AGG | - | chr2.1:3401421-3401440 | MS.gene47810:CDS | 35.0% |
| !! | TTTAGCAACGGAAAAGCATT+GGG | - | chr2.1:3400792-3400811 | MS.gene47810:CDS | 35.0% |
| !! | TTTTAGCAACGGAAAAGCAT+TGG | - | chr2.1:3400791-3400810 | MS.gene47810:CDS | 35.0% |
| AAGCAGCCAAAGAAAGGAAA+AGG | - | chr2.1:3401551-3401570 | MS.gene47810:CDS | 40.0% | |
| AAGCGATGAAGATGATGCTA+AGG | - | chr2.1:3400998-3401017 | MS.gene47810:CDS | 40.0% | |
| ACACATCAGTGCAATGTTTG+TGG | - | chr2.1:3400480-3400499 | MS.gene47810:CDS | 40.0% | |
| ACTACCTTGTATTGAGAGAG+GGG | + | chr2.1:3400598-3400617 | None:intergenic | 40.0% | |
| AGTCAGAAAAGAGGGTGAAA+AGG | - | chr2.1:3400958-3400977 | MS.gene47810:CDS | 40.0% | |
| AGTGATAAGCAGCCAAAGAA+AGG | - | chr2.1:3401545-3401564 | MS.gene47810:CDS | 40.0% | |
| ATGCTTTGTATGGTCACATG+AGG | - | chr2.1:3401282-3401301 | MS.gene47810:CDS | 40.0% | |
| CACATCAGTGCAATGTTTGT+GGG | - | chr2.1:3400481-3400500 | MS.gene47810:CDS | 40.0% | |
| CCAACCATGAATGCTTTGTA+TGG | - | chr2.1:3401272-3401291 | MS.gene47810:CDS | 40.0% | |
| CCTATGAAGAGTCAGAAAAG+AGG | - | chr2.1:3400949-3400968 | MS.gene47810:CDS | 40.0% | |
| CCTATGAAGATTCGGAAAAG+AGG | - | chr2.1:3400385-3400404 | MS.gene47810:CDS | 40.0% | |
| GATACCCCTTTCTCAATACA+AGG | - | chr2.1:3400873-3400892 | MS.gene47810:CDS | 40.0% | |
| GCTTAAGGAAGTGAGATCTT+CGG | + | chr2.1:3400824-3400843 | None:intergenic | 40.0% | |
| GGTGAAACATCAAATGGGAA+TGG | - | chr2.1:3401491-3401510 | MS.gene47810:CDS | 40.0% | |
| TGAAGATGATGCTAAGGATG+AGG | - | chr2.1:3400440-3400459 | MS.gene47810:CDS | 40.0% | |
| ! | CCATACAAAGCATTCATGGT+TGG | + | chr2.1:3401275-3401294 | None:intergenic | 40.0% |
| ! | CCTCTTTTCCGAATCTTCAT+AGG | + | chr2.1:3400388-3400407 | None:intergenic | 40.0% |
| ! | CCTCTTTTCTGACTCTTCAT+AGG | + | chr2.1:3400952-3400971 | None:intergenic | 40.0% |
| ! | GTGACCATACAAAGCATTCA+TGG | + | chr2.1:3401279-3401298 | None:intergenic | 40.0% |
| ! | TCCTCTTTTCAGACTCTTCA+CGG | + | chr2.1:3400671-3400690 | None:intergenic | 40.0% |
| !! | CTATCTCTCTTCTGCCATTT+TGG | + | chr2.1:3401392-3401411 | None:intergenic | 40.0% |
| CAAACCCCTCTCTCAATACA+AGG | - | chr2.1:3400591-3400610 | MS.gene47810:CDS | 45.0% | |
| TGGCAGAAGAGAGATAGAAG+AGG | - | chr2.1:3401395-3401414 | MS.gene47810:CDS | 45.0% | |
| ! | CCTCTTTTCAGACTCTTCAC+GGG | + | chr2.1:3400670-3400689 | None:intergenic | 45.0% |
| !! | AGCAATGGAAAAGCATTGGG+TGG | - | chr2.1:3400513-3400532 | MS.gene47810:CDS | 45.0% |
| !! | AGTAACGGAAAAGCATTGGG+TGG | - | chr2.1:3401077-3401096 | MS.gene47810:CDS | 45.0% |
| !! | GTGTATTGGTAGTGTTGAGG+CGG | - | chr2.1:3401424-3401443 | MS.gene47810:CDS | 45.0% |
| ATGGTCACATGAGGACTCAC+CGG | - | chr2.1:3401291-3401310 | MS.gene47810:CDS | 50.0% | |
| CCCGTGAAGAGTCTGAAAAG+AGG | - | chr2.1:3400667-3400686 | MS.gene47810:CDS | 50.0% | |
| GGGAATGGCAAGAATGAGCT+GGG | - | chr2.1:3401506-3401525 | MS.gene47810:CDS | 50.0% | |
| TGGGAATGGCAAGAATGAGC+TGG | - | chr2.1:3401505-3401524 | MS.gene47810:CDS | 50.0% | |
| !! | AGCAACGGAAAAGCATTGGG+TGG | - | chr2.1:3400795-3400814 | MS.gene47810:CDS | 50.0% |
| !! | GAAAAGCATTGGGTGGTCAC+CGG | - | chr2.1:3400520-3400539 | MS.gene47810:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 3400351 | 3401613 | 3400351 | ID=MS.gene47810 |
| chr2.1 | mRNA | 3400351 | 3401613 | 3400351 | ID=MS.gene47810.t1;Parent=MS.gene47810 |
| chr2.1 | exon | 3400351 | 3401613 | 3400351 | ID=MS.gene47810.t1.exon1;Parent=MS.gene47810.t1 |
| chr2.1 | CDS | 3400351 | 3401613 | 3400351 | ID=cds.MS.gene47810.t1;Parent=MS.gene47810.t1 |
| Gene Sequence |
| Protein sequence |