AlfalfaGEDB | MS.gene47895

M. sativa cultivar XinJiangDaYe / MS.gene47895

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF19160.3

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47895.t1	RHN42782.1	95.4	591	27	0	1	591	35	625	0.00E+00	1156.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47895.t1	O04086	59.4	593	212	10	2	586	32	603	1.8e-195	683.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47895.t1	G7L8V2	95.4	591	27	0	1	591	35	625	0.0e+00	1156.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47895.t1	MTR_8g088780	95.431	591	27	0	1	591	35	625	0.0	1182
MS.gene47895.t1	MTR_2g006910	64.924	593	198	6	1	587	32	620	0.0	773
MS.gene47895.t1	MTR_2g006910	64.924	593	198	6	1	587	32	620	0.0	773
MS.gene47895.t1	MTR_8g088760	62.226	593	189	6	1	589	29	590	0.0	735
MS.gene47895.t1	MTR_1g029610	52.397	584	247	12	1	583	30	583	0.0	580
MS.gene47895.t1	MTR_7g094100	38.448	554	302	17	32	575	49	573	1.83e-104	329
MS.gene47895.t1	MTR_7g094100	38.448	554	302	17	32	575	49	573	1.86e-104	330
MS.gene47895.t1	MTR_1g089600	37.230	556	322	13	28	578	54	587	3.08e-104	328
MS.gene47895.t1	MTR_5g077100	39.086	394	199	13	195	577	296	659	1.26e-73	249
MS.gene47895.t1	MTR_8g052570	41.853	313	165	5	264	575	51	347	1.10e-72	238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47895.t1	AT1G11050	59.259	594	213	10	1	586	31	603	0.0	680
MS.gene47895.t1	AT2G48010	37.500	576	327	15	12	578	23	574	1.20e-108	339
MS.gene47895.t1	AT5G45780	37.685	406	220	8	166	567	158	534	1.78e-74	248
MS.gene47895.t1	AT5G45780	37.685	406	220	8	166	567	201	577	5.25e-74	248
MS.gene47895.t1	AT1G01540	41.463	328	174	6	263	589	141	451	6.52e-71	236
MS.gene47895.t1	AT3G09010	39.877	326	176	6	240	562	8	316	1.45e-70	233
MS.gene47895.t1	AT1G53430	39.237	367	200	7	209	574	609	953	2.82e-70	245
MS.gene47895.t1	AT1G53430	39.237	367	200	7	209	574	568	912	2.87e-70	245
MS.gene47895.t1	AT4G01330	42.320	319	167	5	263	580	149	451	3.80e-70	234
MS.gene47895.t1	AT1G29720	36.408	412	221	9	173	580	586	960	4.56e-70	244

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Find 124 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGAAGTGAGCTTAGTT+TGG	0.314069	4.1:-11807714	None:intergenic
AACACCTAATTTCTTGATCA+CGG	0.512889	4.1:+11808992	MS.gene47895:CDS
AACTCCAACAATATAAATGA+TGG	0.510321	4.1:-11807995	None:intergenic
AACTGTTGCTGTTAAAAGCA+TGG	0.551392	4.1:+11808407	MS.gene47895:CDS
AAGAGCGATGTCTATAGCTT+TGG	0.485884	4.1:+11808912	MS.gene47895:CDS
AAGCATCCAAAGCTTCTGCT+AGG	0.565857	4.1:-11809046	None:intergenic
AAGGGTTGCAGATTTCGGGC+TGG	0.558348	4.1:+11808788	MS.gene47895:CDS
AAGGTCATTGTTAAGTGAAA+GGG	0.495644	4.1:-11807731	None:intergenic
AAGTTCCGCCAATTCCTGAT+AGG	0.436023	4.1:+11809210	MS.gene47895:CDS
AATCATCATTAGTAAACATG+TGG	0.651597	4.1:-11809250	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACCTAATTTCTTGATCA+CGG	+	chr4.1:11808992-11809011	MS.gene47895:CDS	30.0%
AAGGTCATTGTTAAGTGAAA+GGG	-	chr4.1:11807734-11807753	None:intergenic	30.0%
ATATCTCTGTGATAAATAGC+AGG	-	chr4.1:11808729-11808748	None:intergenic	30.0%
ATCTGCATCAAGTAGTATAT+TGG	-	chr4.1:11808760-11808779	None:intergenic	30.0%
ATTATGTGTTAAGAGTTCCT+TGG	+	chr4.1:11807515-11807534	MS.gene47895:CDS	30.0%
GAGGATAAAGAGAATAAGTA+CGG	+	chr4.1:11808200-11808219	MS.gene47895:CDS	30.0%
GTATTCAATCTAAGCAAGAT+TGG	+	chr4.1:11807809-11807828	MS.gene47895:CDS	30.0%
TAATTTCTTGATCACGGATT+GGG	+	chr4.1:11808998-11809017	MS.gene47895:CDS	30.0%
TATACTGAAGTGGAGATTAT+TGG	+	chr4.1:11808462-11808481	MS.gene47895:CDS	30.0%
TTCTCAGTCCAAAACTATAT+TGG	+	chr4.1:11808336-11808355	MS.gene47895:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	11807511	11809286	11807511	ID=MS.gene47895
chr4.1	mRNA	11807511	11809286	11807511	ID=MS.gene47895.t1;Parent=MS.gene47895
chr4.1	exon	11807511	11809286	11807511	ID=MS.gene47895.t1.exon1;Parent=MS.gene47895.t1
chr4.1	CDS	11807511	11809286	11807511	ID=cds.MS.gene47895.t1;Parent=MS.gene47895.t1

Gene Sequence

>MS.gene47895

ATGAATTATGTGTTAAGAGTTCCTTGGAACACCTCAACATGCCTTAACTTCCAACCCTTGCAATCCCAAAACAAAGCACAAACAGCTCTATGTTGTCAAACTTTGTTGTCCCTTTTTGGGATAGCACTAGCAAAAAATCTCAAGAAGAACTCTCTTTTCCAACTCCCAAATCTTCCTACCTCTACCTCATGCCTTCAAGACTTCCAAACTAAGCTCACTTCCCTTTCACTTAACAATGACCTTGTGTCTTCATGCTTTGATCCACTTCAATTTGTTATCACTCCCAACATATGTGCTCGTATTCAATCTAAGCAAGATTGGATCAGCAGGGTTGGTCCTGCACCATTGTTCAACACTTCTTGTAAACCAGACCTTAGTGTTTCTACCAATTGTGATGCATGTGTTAACCAGGGACTAAAGGTTCAAGAGACGCTGAATCGAATTGATGGTAATAGTTCGCATTCCAAAGATTGCTTTTACTTCACCATCATTTATATTGTTGGAGTTGTGAATGAGTTTGGCCCTGAAAGCAACGGTGCTATGTCATGCATTCTTGAATTGCCTCTTAACTCTCAAGTGGGTTCCAGAAAAAAGAGCCATCATGCTCTTGTTTTTGGGTTAATTGGAGCTTCAGTCGGATTCATCGTTATCATGTTCTCTTTGTTTGCCTACTATTTTTGGCACACTAGGAGGATAAAGAGAATAAGTACGGAAAATTTTCTAGACCTTGCCGATCCAAGTGAACAAAGGTCCGCTCCAAGATTGAGACCAAAAACAGGATCAATCTGGTTCAAATTTGATGACCTTGTAAAGGCGACTAACAATTTCTCAGTCCAAAACTATATTGGTAGAGGTGGATTTGGGATAGTTTACAAGGGCATTCTACCTGATGGCACAACTGTTGCTGTTAAAAGCATGGAAGAATCTGATTTTCAAGGGGATGATGAGTTCTATACTGAAGTGGAGATTATTGGCAACTTGAAGCACCGCAATCTAGTGCCACTAAGAGGGTGTTGTGTGGTTGATGAGGATCATAATCAAGAGCACAAAAATAGGTATCTTGTTTATGATTATATGCCAAATGGTAACCTTGAAGATCATCTCTTTCCATCCTCGGACAACAAAAACGAAAAGAAATTATTGACTTGGCCTCAAAGAAAAAACATAATCTTGGATGTGGCACGTGGGTTGGTTTATTTGCACTTTGGAGTTAAACCTGCTATTTATCACAGAGATATCAAAGCCACCAATATACTACTTGATGCAGATATGAGAGCAAGGGTTGCAGATTTCGGGCTGGCGAAAGAAAGCAGTGAAAGTAGGTCTCAACTAAATACAAGAGTAGCTGGAACTTATGGATATCTTGCTCCAGAATATGCACTCTATGGTCAGCTAACCGGGAAGAGCGATGTCTATAGCTTTGGTGTGGTTGTTTTGGAGATTATGTGTGGAAGAAAAGCTCTCGAGTCGTCTTCATCCGGAACACCTAATTTCTTGATCACGGATTGGGTTTGGTCGTTAATGAAATCAGGAAACCTAGCAGAAGCTTTGGATGCTTCTATCTTGGTGGATGATGGAAAATCCAATAGTAGAAATATAATGCAGAGGTTTTTGCTGGTTGGAATTCTGTCTTCTCATGTAATAGCTGATTCAAGGCCAACAATTTTGGATGCTTTGAAGATGTTAGAAGGAGATATTGAAGTTCCGCCAATTCCTGATAGGCCGACGACTCTTGAGCACCACATGTTTACTAATGATGATTCTGCAAAACAGTGA

Protein sequence

>MS.gene47895.t1

MNYVLRVPWNTSTCLNFQPLQSQNKAQTALCCQTLLSLFGIALAKNLKKNSLFQLPNLPTSTSCLQDFQTKLTSLSLNNDLVSSCFDPLQFVITPNICARIQSKQDWISRVGPAPLFNTSCKPDLSVSTNCDACVNQGLKVQETLNRIDGNSSHSKDCFYFTIIYIVGVVNEFGPESNGAMSCILELPLNSQVGSRKKSHHALVFGLIGASVGFIVIMFSLFAYYFWHTRRIKRISTENFLDLADPSEQRSAPRLRPKTGSIWFKFDDLVKATNNFSVQNYIGRGGFGIVYKGILPDGTTVAVKSMEESDFQGDDEFYTEVEIIGNLKHRNLVPLRGCCVVDEDHNQEHKNRYLVYDYMPNGNLEDHLFPSSDNKNEKKLLTWPQRKNIILDVARGLVYLHFGVKPAIYHRDIKATNILLDADMRARVADFGLAKESSESRSQLNTRVAGTYGYLAPEYALYGQLTGKSDVYSFGVVVLEIMCGRKALESSSSGTPNFLITDWVWSLMKSGNLAEALDASILVDDGKSNSRNIMQRFLLVGILSSHVIADSRPTILDALKMLEGDIEVPPIPDRPTTLEHHMFTNDDSAKQ