AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48176

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48176.t1 MTR_6g034945 98.969 291 3 0 1 291 20 310 0.0 588
MS.gene48176.t1 MTR_5g075390 52.459 244 84 9 7 242 49 268 3.76e-61 198
MS.gene48176.t1 MTR_3g467120 44.156 308 114 15 7 275 36 324 1.52e-52 176
MS.gene48176.t1 MTR_4g072090 57.714 175 66 3 57 224 279 452 6.78e-50 172
MS.gene48176.t1 MTR_3g094020 49.541 218 84 6 9 224 7 200 1.27e-49 167
MS.gene48176.t1 MTR_2g099050 57.143 168 57 4 88 241 168 334 2.67e-47 164
MS.gene48176.t1 MTR_4g072090 56.442 163 63 3 57 212 279 440 6.41e-44 155
MS.gene48176.t1 MTR_1g023690 51.381 181 73 5 55 224 303 479 4.23e-33 127
MS.gene48176.t1 MTR_4g079500 43.966 116 58 1 130 238 192 307 1.86e-19 87.0
MS.gene48176.t1 MTR_2g090900 47.000 100 53 0 130 229 189 288 6.29e-19 85.5
MS.gene48176.t1 MTR_2g090900 47.000 100 53 0 130 229 189 288 8.38e-19 85.5
MS.gene48176.t1 MTR_1g099030 33.906 233 137 6 6 233 5 225 9.73e-19 84.3
MS.gene48176.t1 MTR_0405s0060 47.619 84 37 2 81 163 78 155 2.34e-13 68.6
MS.gene48176.t1 MTR_8g088650 29.719 249 135 10 3 225 88 322 1.77e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48176.t1 AT1G43700 46.203 316 115 11 2 268 23 332 2.03e-65 208
MS.gene48176.t1 AT2G31370 64.828 145 41 2 90 225 151 294 1.69e-50 171
MS.gene48176.t1 AT2G31370 59.880 167 56 3 90 246 151 316 4.83e-50 170
MS.gene48176.t1 AT2G31370 59.880 167 56 3 90 246 151 316 4.83e-50 170
MS.gene48176.t1 AT2G31370 59.880 167 56 3 90 246 151 316 4.83e-50 170
MS.gene48176.t1 AT2G31370 59.880 167 56 3 90 246 151 316 4.83e-50 170
MS.gene48176.t1 AT2G31370 59.880 167 56 3 90 246 151 316 4.83e-50 170
MS.gene48176.t1 AT2G31370 59.880 167 56 3 90 246 151 316 4.83e-50 170
MS.gene48176.t1 AT4G38900 57.143 182 61 4 57 224 308 486 1.84e-49 172
MS.gene48176.t1 AT4G38900 57.143 182 61 4 57 224 308 486 1.84e-49 172
MS.gene48176.t1 AT2G40620 48.246 228 97 6 3 224 28 240 2.26e-49 167
MS.gene48176.t1 AT4G38900 55.319 188 61 5 57 224 308 492 4.10e-47 166
MS.gene48176.t1 AT1G06070 54.598 174 63 3 90 254 159 325 8.32e-46 160
MS.gene48176.t1 AT1G06850 63.281 128 46 1 104 231 121 247 1.10e-45 157
MS.gene48176.t1 AT2G21230 54.444 180 66 3 57 224 287 462 9.52e-45 159
MS.gene48176.t1 AT2G21230 54.444 180 66 3 57 224 287 462 9.52e-45 159
MS.gene48176.t1 AT2G21230 52.688 186 66 4 57 224 287 468 1.58e-42 153
MS.gene48176.t1 AT2G21230 53.846 169 62 3 57 213 287 451 2.14e-40 146
MS.gene48176.t1 AT1G06850 72.152 79 21 1 104 182 121 198 3.81e-28 108
MS.gene48176.t1 AT2G13150 35.503 169 93 4 64 225 83 242 4.70e-19 85.1
MS.gene48176.t1 AT2G42380 41.880 117 57 1 130 235 184 300 5.50e-19 85.9
MS.gene48176.t1 AT3G58120 47.368 95 50 0 130 224 200 294 8.82e-19 85.1
MS.gene48176.t1 AT2G12940 32.597 181 108 5 64 241 82 251 1.39e-17 81.3
MS.gene48176.t1 AT2G12900 38.235 102 62 1 124 225 109 209 1.83e-16 77.8
MS.gene48176.t1 AT2G42380 45.238 84 46 0 130 213 184 267 4.15e-15 73.9
MS.gene48176.t1 AT3G58120 45.679 81 44 0 130 210 200 280 3.99e-14 71.6
MS.gene48176.t1 AT1G58110 28.571 252 135 7 3 225 87 322 4.75e-13 68.9
MS.gene48176.t1 AT1G58110 28.571 252 135 7 3 225 87 322 4.75e-13 68.9
MS.gene48176.t1 AT2G42380 37.607 117 51 2 130 235 184 289 9.48e-13 67.8
MS.gene48176.t1 AT2G21235 38.235 102 62 1 132 233 359 459 2.08e-12 67.8
MS.gene48176.t1 AT2G42380 64.444 45 16 0 130 174 184 228 1.33e-11 63.5
MS.gene48176.t1 AT2G42380 64.444 45 16 0 130 174 184 228 1.33e-11 63.5

Find 89 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGCCAGGTTGTGTCTGC+TGG 0.238257 6.4:+7469341 None:intergenic
TTTACAGGATTCTTGCTAAT+AGG 0.313599 6.4:-7472415 MS.gene48176:intron
TTGATCCTAAGAGAGCTAAA+AGG 0.339939 6.4:-7473959 MS.gene48176:intron
TGATTTGACTGCTCAGAATA+AGG 0.343859 6.4:-7470069 MS.gene48176:CDS
CGTCAGAGGGACGGCATCTC+AGG 0.344618 6.4:-7474172 MS.gene48176:CDS
GGGTTAGGGTTTGGTGGTGA+AGG 0.352329 6.4:-7474119 MS.gene48176:CDS
GAGTCCATCGGGACAGCGTC+AGG 0.359931 6.4:+7474218 None:intergenic
GCTGGTAATCCTTCATTTAA+CGG 0.384795 6.4:-7469421 MS.gene48176:CDS
TTTGATGGGTTAGGGTTTGG+TGG 0.386396 6.4:-7474125 MS.gene48176:CDS
CTGGTAATCCTTCATTTAAC+GGG 0.387737 6.4:-7469420 MS.gene48176:CDS
TGTTGTATACGAGCTACTTT+TGG 0.392286 6.4:+7469254 None:intergenic
AATCATTTGACTGCCGTTGC+TGG 0.392785 6.4:-7469439 MS.gene48176:CDS
TGCACAACTTACAGTCCTTC+AGG 0.397567 6.4:-7472297 MS.gene48176:intron
AGAAAGAACTTCAACGCCTT+AGG 0.400050 6.4:-7469471 MS.gene48176:CDS
CTGAGTGAGAACGGCGGTGG+TGG 0.401141 6.4:+7474330 None:intergenic
TCGTGGTCGCTCTAACTTCA+TGG 0.412681 6.4:-7469287 MS.gene48176:CDS
ACAGCGTCAGGGGACGGGAG+AGG 0.412739 6.4:+7474230 None:intergenic
GGAAAAGGTGGAAGAGAGGA+AGG 0.414596 6.4:-7474096 MS.gene48176:CDS
GTTAGGGTTTGGTGGTGAAG+GGG 0.427763 6.4:-7474117 MS.gene48176:CDS
CAGCGTCAGGGGACGGGAGA+GGG 0.430362 6.4:+7474231 None:intergenic
CATGCCAGGTTGTGTCTGCT+GGG 0.434483 6.4:+7469342 None:intergenic
AAGGGGAAAAGGTGGAAGAG+AGG 0.435317 6.4:-7474100 MS.gene48176:CDS
GTTTGGTGGTGAAGGGGAAA+AGG 0.435988 6.4:-7474111 MS.gene48176:CDS
TCCATGGATGGGTCTGAGAT+GGG 0.439417 6.4:-7474050 MS.gene48176:CDS
TTCCATGGATGGGTCTGAGA+TGG 0.446734 6.4:-7474051 MS.gene48176:CDS
TCGGGACAGCGTCAGGGGAC+GGG 0.447553 6.4:+7474225 None:intergenic
GGTTGTGTCTGCTGGGGTTG+AGG 0.447864 6.4:+7469349 None:intergenic
GAGATGGGGTTGTTTGAAGT+TGG 0.453490 6.4:-7474035 MS.gene48176:CDS
GGTTAGGGTTTGGTGGTGAA+GGG 0.457604 6.4:-7474118 MS.gene48176:CDS
AGGGGACGGGAGAGGGAGGT+TGG 0.458623 6.4:+7474238 None:intergenic
GAACGAGAAGGCGGCATGCC+AGG 0.461441 6.4:+7469328 None:intergenic
GAAAGAACTTCAACGCCTTA+GGG 0.472203 6.4:-7469470 MS.gene48176:CDS
ATCGGGACAGCGTCAGGGGA+CGG 0.485265 6.4:+7474224 None:intergenic
GTCCCCTGACGCTGTCCCGA+TGG 0.496675 6.4:-7474222 MS.gene48176:CDS
AGAGGAAGGTGAGTAGACAT+AGG 0.498750 6.4:-7474082 MS.gene48176:CDS
ATCGAAGTCGGACGGGTCGA+AGG 0.500424 6.4:+7474265 None:intergenic
CGTCGAAGTTTGCTGCGAAA+CGG 0.501035 6.4:+7474297 None:intergenic
GAGAACATCCCGTTAAATGA+AGG 0.504928 6.4:+7469412 None:intergenic
CGGTGGTGGGTCCCACGTGA+TGG 0.512907 6.4:+7474344 None:intergenic
AGAGCGACCACGACCGTTGA+AGG 0.516566 6.4:+7469297 None:intergenic
GATCAACCCTTCAACGGTCG+TGG 0.516911 6.4:-7469304 MS.gene48176:CDS
CAACCCCAGCAGACACAACC+TGG 0.516981 6.4:-7469346 MS.gene48176:CDS
AACTCGATATACAAGTGAGC+TGG 0.519563 6.4:-7472363 MS.gene48176:CDS
GGGTTGTTTGAAGTTGGTGA+TGG 0.524705 6.4:-7474029 MS.gene48176:CDS
TGGACTCATCAGAGTCCATC+GGG 0.530528 6.4:+7474207 None:intergenic
CATCGGGAAGTCAGCGTCAG+AGG 0.531841 6.4:-7474186 MS.gene48176:CDS
AGGATTACTCATCTGTTGCA+TGG 0.537744 6.4:+7469369 None:intergenic
TGAGTGAGAACGGCGGTGGT+GGG 0.539319 6.4:+7474331 None:intergenic
AGTTCAGCAAGTTTCTCAGC+CGG 0.541555 6.4:+7473990 None:intergenic
AGGTATAGTAGTTCCATGGA+TGG 0.543947 6.4:-7474062 MS.gene48176:CDS
TGGACTCTGATGAGTCCATC+GGG 0.544487 6.4:-7474202 MS.gene48176:CDS
TGGTGGGTCCCACGTGATGG+TGG 0.546686 6.4:+7474347 None:intergenic
TGGAGATATCGAAGTCGGAC+GGG 0.546734 6.4:+7474258 None:intergenic
CGTCAGGGGACGGGAGAGGG+AGG 0.547402 6.4:+7474234 None:intergenic
AAGCTTTGCTTGTTGCTCGA+AGG 0.549248 6.4:+7470025 None:intergenic
CCCCATCTCAGACCCATCCA+TGG 0.549369 6.4:+7474049 None:intergenic
TGGTGGTGAAGGGGAAAAGG+TGG 0.556007 6.4:-7474108 MS.gene48176:CDS
CGTTCTGATCAACCCTTCAA+CGG 0.556715 6.4:-7469310 MS.gene48176:CDS
GTCCATCGGGACAGCGTCAG+GGG 0.557593 6.4:+7474220 None:intergenic
AGTCCATCGGGACAGCGTCA+GGG 0.559909 6.4:+7474219 None:intergenic
ATCGGGAAGTCAGCGTCAGA+GGG 0.565138 6.4:-7474185 MS.gene48176:CDS
GGAAGTCAGCGTCAGAGGGA+CGG 0.567008 6.4:-7474181 MS.gene48176:CDS
CCATGGATGGGTCTGAGATG+GGG 0.569336 6.4:-7474049 MS.gene48176:CDS
GAGCGACCACGACCGTTGAA+GGG 0.569915 6.4:+7469298 None:intergenic
ACATAGGTATAGTAGTTCCA+TGG 0.575020 6.4:-7474066 MS.gene48176:CDS
ATGGACTCTGATGAGTCCAT+CGG 0.585619 6.4:-7474203 MS.gene48176:CDS
CTCTGACGCTGACTTCCCGA+TGG 0.585973 6.4:+7474187 None:intergenic
GCATCTCAGGAGTTTGTCTG+TGG 0.588489 6.4:-7474159 MS.gene48176:CDS
ATGGACTCATCAGAGTCCAT+CGG 0.588783 6.4:+7474206 None:intergenic
CTGCTGCACGATCGAAAGAG+AGG 0.598234 6.4:-7472388 MS.gene48176:CDS
GATATACAAGTGAGCTGGAG+AGG 0.598508 6.4:-7472358 MS.gene48176:CDS
AGGTGGTGTCTGAGTGAGAA+CGG 0.599071 6.4:+7474321 None:intergenic
CAACAAGCAAAGCTTAGAGA+AGG 0.603588 6.4:-7470017 MS.gene48176:intron
TTGGAGATATCGAAGTCGGA+CGG 0.611978 6.4:+7474257 None:intergenic
GGTATAGTAGTTCCATGGAT+GGG 0.613894 6.4:-7474061 MS.gene48176:CDS
GAAAACATGCCACCATCACG+TGG 0.629605 6.4:-7474356 None:intergenic
GAAGTTTGCTGCGAAACGGA+AGG 0.630495 6.4:+7474301 None:intergenic
GAGGTTGGAGATATCGAAGT+CGG 0.632312 6.4:+7474253 None:intergenic
AAATGAAGGATTACCAGCAA+CGG 0.634361 6.4:+7469426 None:intergenic
TGGTGTGAAGAAATCTATGC+CGG 0.640871 6.4:-7474009 MS.gene48176:CDS
TGTCTGAGTGAGAACGGCGG+TGG 0.649339 6.4:+7474327 None:intergenic
AAGGGTTGATCAGAACGAGA+AGG 0.660536 6.4:+7469316 None:intergenic
GGTTGATCAGAACGAGAAGG+CGG 0.661757 6.4:+7469319 None:intergenic
ATGCCAGGTTGTGTCTGCTG+GGG 0.664418 6.4:+7469343 None:intergenic
GTTTGCTGCGAAACGGAAGG+TGG 0.671587 6.4:+7474304 None:intergenic
ATTCTGAGCAGTCAAATCAG+TGG 0.697438 6.4:+7470073 None:intergenic
GGACTGTAAGTTGTGCAGAG+AGG 0.716589 6.4:+7472303 None:intergenic
AAAACATGCCACCATCACGT+GGG 0.739972 6.4:-7474355 None:intergenic
TGGTGTCTGAGTGAGAACGG+CGG 0.821224 6.4:+7474324 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAAAAAAGATAAAA+GGG - chr6.4:7471129-7471148 MS.gene48176:intron 10.0%
!! TTATTTATGTACTAAATTTA+AGG - chr6.4:7469747-7469766 MS.gene48176:intron 10.0%
!! AAAAAACATCTTAAAACAAA+GGG + chr6.4:7470822-7470841 None:intergenic 15.0%
!! GAAAAGAAAAAAAAGATAAA+AGG - chr6.4:7471128-7471147 MS.gene48176:intron 15.0%
!! GTAAACGTATATATAATTTA+CGG + chr6.4:7470446-7470465 None:intergenic 15.0%
!!! ACAAAATTTAGTAATTTTCT+TGG - chr6.4:7472979-7472998 MS.gene48176:intron 15.0%
!!! CATAAATTTGATTTTATTTC+TGG + chr6.4:7472654-7472673 None:intergenic 15.0%
!!! TTATAGCATAGTTTTAAAAA+AGG + chr6.4:7473784-7473803 None:intergenic 15.0%
!!! TTATTTTGTAATGGATAATT+TGG - chr6.4:7470768-7470787 MS.gene48176:intron 15.0%
!! AAATGTGCAAAAGAATAAAA+AGG - chr6.4:7473484-7473503 MS.gene48176:intron 20.0%
!! AAATTGTATGTGTTTATGAT+TGG - chr6.4:7470078-7470097 MS.gene48176:CDS 20.0%
!! AACAAGATGATAAATAGTTT+AGG - chr6.4:7472928-7472947 MS.gene48176:intron 20.0%
!! AAGATACTGTGATTAATTTA+TGG + chr6.4:7472736-7472755 None:intergenic 20.0%
!! ACATTTAAATTAATTCAGTC+AGG + chr6.4:7473420-7473439 None:intergenic 20.0%
!! ATACATACAAATGTATAGTT+TGG - chr6.4:7471592-7471611 MS.gene48176:intron 20.0%
!! ATATAAGTTTAATGAGTATG+TGG - chr6.4:7469827-7469846 MS.gene48176:intron 20.0%
!! ATGCAATTATAATCAAAATG+AGG + chr6.4:7472149-7472168 None:intergenic 20.0%
!! ATTAAGTGTTCAATGAAATA+GGG - chr6.4:7472046-7472065 MS.gene48176:intron 20.0%
!! ATTCAATAAAGATGTGATAA+AGG + chr6.4:7473677-7473696 None:intergenic 20.0%
!! ATTTGTATGATAATCGATAA+GGG + chr6.4:7472010-7472029 None:intergenic 20.0%
!! CAGAAAAATCTTATATGATA+TGG + chr6.4:7472543-7472562 None:intergenic 20.0%
!! GAAAAAACATCTTAAAACAA+AGG + chr6.4:7470823-7470842 None:intergenic 20.0%
!! GACTAAAATTCTATATATGT+TGG + chr6.4:7470950-7470969 None:intergenic 20.0%
!! TAAAACTATGCTATAAAAGT+TGG - chr6.4:7473788-7473807 MS.gene48176:intron 20.0%
!! TAAATAGTTTAGGCTATTAT+AGG - chr6.4:7472938-7472957 MS.gene48176:intron 20.0%
!! TATTAAGTGTTCAATGAAAT+AGG - chr6.4:7472045-7472064 MS.gene48176:intron 20.0%
!! TTACCATTTAAATATGAACA+TGG - chr6.4:7474086-7474105 MS.gene48176:CDS 20.0%
!! TTATCACATCTTTATTGAAT+TGG - chr6.4:7473677-7473696 MS.gene48176:intron 20.0%
!! TTCAATAAAGATGTGATAAA+GGG + chr6.4:7473676-7473695 None:intergenic 20.0%
!!! ATGTGTCTTTTATTTTGTAA+TGG - chr6.4:7470759-7470778 MS.gene48176:intron 20.0%
! AAAAATATCTGTCTTAAGGA+TGG + chr6.4:7473239-7473258 None:intergenic 25.0%
! AATCTTATATGATATGGTGA+AGG + chr6.4:7472537-7472556 None:intergenic 25.0%
! ACTCAAAAATATCTGTCTTA+AGG + chr6.4:7473243-7473262 None:intergenic 25.0%
! ATCATAGATATTTGATGAGT+TGG + chr6.4:7473387-7473406 None:intergenic 25.0%
! ATCTACATCATTGTTAAAGA+TGG + chr6.4:7471447-7471466 None:intergenic 25.0%
! CATCTAAAAATCACATGAAA+AGG + chr6.4:7473344-7473363 None:intergenic 25.0%
! GATTTGTATGATAATCGATA+AGG + chr6.4:7472011-7472030 None:intergenic 25.0%
! GTTACATAGAAGTAACTAAA+TGG + chr6.4:7473070-7473089 None:intergenic 25.0%
! TAGCCATGTTCATATTTAAA+TGG + chr6.4:7474092-7474111 None:intergenic 25.0%
! TCAATAAAGATGTGATAAAG+GGG + chr6.4:7473675-7473694 None:intergenic 25.0%
! TGTTAAATTGATTGTGTTTG+TGG - chr6.4:7470864-7470883 MS.gene48176:intron 25.0%
! TGTTTGGATTATGTAGAATT+TGG - chr6.4:7471152-7471171 MS.gene48176:intron 25.0%
! TTAATAAACCATCGTAAGTA+GGG + chr6.4:7470593-7470612 None:intergenic 25.0%
! TTCAAGCAATGATATTTCTT+TGG + chr6.4:7474024-7474043 None:intergenic 25.0%
! TTCAGTGTAATCATATGTAT+TGG + chr6.4:7471735-7471754 None:intergenic 25.0%
! TTTAATAAACCATCGTAAGT+AGG + chr6.4:7470594-7470613 None:intergenic 25.0%
! TTTCTTGATCCATAAAAAAG+TGG - chr6.4:7473639-7473658 MS.gene48176:intron 25.0%
! TTTGTATGATAATCGATAAG+GGG + chr6.4:7472009-7472028 None:intergenic 25.0%
!! AAAAAACTTCCTTTTTATCC+TGG + chr6.4:7472339-7472358 None:intergenic 25.0%
!! ACTTTGAAAAAGGCATAAAT+AGG + chr6.4:7472870-7472889 None:intergenic 25.0%
!! ACTTTGAAAATGTAGAAAGT+AGG + chr6.4:7472233-7472252 None:intergenic 25.0%
!! ATCGGATATTTTCAAAACTA+AGG + chr6.4:7473864-7473883 None:intergenic 25.0%
!! CTTCTCTTAAAAGTTTTTCT+AGG + chr6.4:7470195-7470214 None:intergenic 25.0%
!! CTTTGAAAATGTAGAAAGTA+GGG + chr6.4:7472232-7472251 None:intergenic 25.0%
!! CTTTTTATATGCCAATTTTG+TGG - chr6.4:7472753-7472772 MS.gene48176:intron 25.0%
!! GTTGTAATGAACTTTGAAAA+AGG + chr6.4:7472880-7472899 None:intergenic 25.0%
!! TATTGAATTGGACTAGAAAA+AGG - chr6.4:7473689-7473708 MS.gene48176:intron 25.0%
!! TCGGATATTTTCAAAACTAA+GGG + chr6.4:7473863-7473882 None:intergenic 25.0%
!! TTTTGAACCTATATTTCAGA+TGG - chr6.4:7470912-7470931 MS.gene48176:intron 25.0%
!! TTTTGCATCATTTACGATTT+TGG - chr6.4:7473836-7473855 MS.gene48176:intron 25.0%
!!! AAAAAAGATAAAAGGGTGTT+TGG - chr6.4:7471136-7471155 MS.gene48176:intron 25.0%
!!! AAGCAAAATCCACTTTTTTA+TGG + chr6.4:7473651-7473670 None:intergenic 25.0%
!!! ATCTTTTAGTTAGGAAAACA+TGG + chr6.4:7472450-7472469 None:intergenic 25.0%
!!! CTTTTCATGTGATTTTTAGA+TGG - chr6.4:7473342-7473361 MS.gene48176:intron 25.0%
!!! GTTGCTTTTGTGATATAAAT+CGG - chr6.4:7473969-7473988 MS.gene48176:CDS 25.0%
!!! TCACTTTTTGAAGTTTGTTT+TGG - chr6.4:7469712-7469731 MS.gene48176:intron 25.0%
AAAGGAAATAACATACCTGA+AGG + chr6.4:7471338-7471357 None:intergenic 30.0%
AATGCTGTATGTTTGTTTAC+AGG - chr6.4:7471187-7471206 MS.gene48176:intron 30.0%
ACATCATTGTTAAAGATGGA+GGG + chr6.4:7471443-7471462 None:intergenic 30.0%
ACCAGAAATTCCATATGTAT+AGG + chr6.4:7470677-7470696 None:intergenic 30.0%
ACTTCAATTACCAAAAGTAG+TGG - chr6.4:7474353-7474372 MS.gene48176:CDS 30.0%
AGAGAGAAGATTATGTAGTT+AGG - chr6.4:7470121-7470140 MS.gene48176:intron 30.0%
ATCAAATTCACAAACACAAC+TGG + chr6.4:7470712-7470731 None:intergenic 30.0%
ATCCCTAAATACGTTAGATA+GGG + chr6.4:7473891-7473910 None:intergenic 30.0%
ATTCTATATATGTTGGTCCT+AGG + chr6.4:7470943-7470962 None:intergenic 30.0%
CAATAAAGATGTGATAAAGG+GGG + chr6.4:7473674-7473693 None:intergenic 30.0%
CAATCATGCTTACGAAAAAT+TGG - chr6.4:7472405-7472424 MS.gene48176:CDS 30.0%
CGATTCTAAGTTTAGAAGTT+TGG - chr6.4:7470636-7470655 MS.gene48176:intron 30.0%
CTTAAAACGACAACTACAAA+GGG - chr6.4:7473015-7473034 MS.gene48176:intron 30.0%
GCATATACTTGGTATTATGT+GGG + chr6.4:7471520-7471539 None:intergenic 30.0%
GGAAGTTAATCCTATACATA+TGG - chr6.4:7470664-7470683 MS.gene48176:intron 30.0%
GGTTGTAACGCAAATTATAT+AGG + chr6.4:7471647-7471666 None:intergenic 30.0%
GTTAAGGAACATTGAGTTTA+GGG - chr6.4:7469968-7469987 MS.gene48176:intron 30.0%
TAATTTGACTCAGTTGGTTA+AGG - chr6.4:7469952-7469971 MS.gene48176:intron 30.0%
TACATCATTGTTAAAGATGG+AGG + chr6.4:7471444-7471463 None:intergenic 30.0%
TACGTTAGATAGGGAAAAAT+CGG + chr6.4:7473882-7473901 None:intergenic 30.0%
TATTTCAGATGGTTAATCCT+AGG - chr6.4:7470923-7470942 MS.gene48176:intron 30.0%
TCAATAGTCAGAAAACTCAA+AGG + chr6.4:7473108-7473127 None:intergenic 30.0%
TCATCACAATACCACAAAAT+TGG + chr6.4:7472767-7472786 None:intergenic 30.0%
TCCTATACATATGGAATTTC+TGG - chr6.4:7470673-7470692 MS.gene48176:intron 30.0%
TGCATATACTTGGTATTATG+TGG + chr6.4:7471521-7471540 None:intergenic 30.0%
TGGAAATATAAGCACGTAAT+TGG + chr6.4:7472290-7472309 None:intergenic 30.0%
TGTCAAATTACTACAAGTAG+AGG - chr6.4:7470165-7470184 MS.gene48176:intron 30.0%
TGTTTGTAACATGTTCTTGT+TGG - chr6.4:7471405-7471424 MS.gene48176:intron 30.0%
TTAAAACGACAACTACAAAG+GGG - chr6.4:7473016-7473035 MS.gene48176:intron 30.0%
TTAACCATGACTCACAAATT+AGG + chr6.4:7470468-7470487 None:intergenic 30.0%
TTAAGTAGTCTCAGGTTTAA+TGG + chr6.4:7472109-7472128 None:intergenic 30.0%
TTCAGAACAGTGAAATGAAA+AGG + chr6.4:7471356-7471375 None:intergenic 30.0%
TTCCCTATCTAACGTATTTA+GGG - chr6.4:7473886-7473905 MS.gene48176:intron 30.0%
TTCTACTAAAGTCACGTAAA+AGG + chr6.4:7472834-7472853 None:intergenic 30.0%
TTTACAGGATTCTTGCTAAT+AGG - chr6.4:7471202-7471221 MS.gene48176:intron 30.0%
TTTCCCTATCTAACGTATTT+AGG - chr6.4:7473885-7473904 MS.gene48176:intron 30.0%
! AAGTTTAGAAGTTTGGAATC+TGG - chr6.4:7470643-7470662 MS.gene48176:intron 30.0%
! ACCATCTACGTAAAATTTTG+TGG + chr6.4:7472310-7472329 None:intergenic 30.0%
! GGATTAACCATCTGAAATAT+AGG + chr6.4:7470922-7470941 None:intergenic 30.0%
! GTAATCATATGTATTGGTGT+CGG + chr6.4:7471729-7471748 None:intergenic 30.0%
! TCACATTCCTCTTTTATCAA+GGG - chr6.4:7471924-7471943 MS.gene48176:intron 30.0%
! TCCACAAAATTTTACGTAGA+TGG - chr6.4:7472306-7472325 MS.gene48176:CDS 30.0%
! TGACTATTGACTATGTTAGA+GGG - chr6.4:7473118-7473137 MS.gene48176:intron 30.0%
! TTCACATTCCTCTTTTATCA+AGG - chr6.4:7471923-7471942 MS.gene48176:intron 30.0%
! TTTACCTAATTTGTGAGTCA+TGG - chr6.4:7470461-7470480 MS.gene48176:intron 30.0%
!! AGTTGGCTTAAATACAGTTT+TGG - chr6.4:7473805-7473824 MS.gene48176:intron 30.0%
!! ATGTGTTTATGATTGGCTTA+GGG - chr6.4:7470085-7470104 MS.gene48176:intron 30.0%
!! GTGATTTTTAGATGGATAGA+TGG - chr6.4:7473350-7473369 MS.gene48176:intron 30.0%
!! TATGTGTTTATGATTGGCTT+AGG - chr6.4:7470084-7470103 MS.gene48176:intron 30.0%
!! TGTGGTTGATTCTAAGATTA+GGG - chr6.4:7470882-7470901 MS.gene48176:intron 30.0%
!! TTGTGGTTGATTCTAAGATT+AGG - chr6.4:7470881-7470900 MS.gene48176:intron 30.0%
!!! ATAAACCTTTTAGCTCTCTT+AGG + chr6.4:7469666-7469685 None:intergenic 30.0%
!!! GCAAAAGTGTTTTGCAAAAA+TGG + chr6.4:7474053-7474072 None:intergenic 30.0%
!!! TGGATTCAGAGTTTTTTGAT+GGG - chr6.4:7469478-7469497 MS.gene48176:CDS 30.0%
AAAGTGTGACATTGTCTAAG+TGG + chr6.4:7473942-7473961 None:intergenic 35.0%
AAATGAAGGATTACCAGCAA+CGG + chr6.4:7474194-7474213 None:intergenic 35.0%
AATTACCCCCTTGATAAAAG+AGG + chr6.4:7471934-7471953 None:intergenic 35.0%
ACATAGGTATAGTAGTTCCA+TGG - chr6.4:7469551-7469570 MS.gene48176:intron 35.0%
ACATGCAACATGCATATACT+TGG + chr6.4:7471531-7471550 None:intergenic 35.0%
AGTCTCGTACTAAAGTTTCT+TGG - chr6.4:7470536-7470555 MS.gene48176:intron 35.0%
AGTCTCTAACTGAAGTTTGT+CGG - chr6.4:7470399-7470418 MS.gene48176:intron 35.0%
AGTTAGGAGAGTAAATCAGA+TGG - chr6.4:7470137-7470156 MS.gene48176:intron 35.0%
ATCTGTAATCCAACAAACCA+AGG + chr6.4:7473304-7473323 None:intergenic 35.0%
ATTTGTGAGTCATGGTTAAG+CGG - chr6.4:7470469-7470488 MS.gene48176:intron 35.0%
CATCCCTAAATACGTTAGAT+AGG + chr6.4:7473892-7473911 None:intergenic 35.0%
CCTACTTCAACGATGTAAAA+TGG + chr6.4:7472569-7472588 None:intergenic 35.0%
CCTTAAAACGACAACTACAA+AGG - chr6.4:7473014-7473033 MS.gene48176:intron 35.0%
CGTAAATGATGCAAAATAGC+AGG + chr6.4:7473832-7473851 None:intergenic 35.0%
CTAAACCACAAAACAGAAGA+CGG + chr6.4:7472175-7472194 None:intergenic 35.0%
CTGGTAATCCTTCATTTAAC+GGG - chr6.4:7474197-7474216 MS.gene48176:CDS 35.0%
CTGTACTCATAACTTTGAAC+TGG - chr6.4:7471861-7471880 MS.gene48176:intron 35.0%
GCTGGTAATCCTTCATTTAA+CGG - chr6.4:7474196-7474215 MS.gene48176:CDS 35.0%
GGTTAAGGAACATTGAGTTT+AGG - chr6.4:7469967-7469986 MS.gene48176:intron 35.0%
GTCTCGTACTAAAGTTTCTT+GGG - chr6.4:7470537-7470556 MS.gene48176:intron 35.0%
GTTACTTCTATGTAACACAG+TGG - chr6.4:7473074-7473093 MS.gene48176:intron 35.0%
GTTTCAGATTAAGTAGTCTC+AGG + chr6.4:7472117-7472136 None:intergenic 35.0%
TATGCATGTTGCATGTGTAT+AGG - chr6.4:7471535-7471554 MS.gene48176:intron 35.0%
TCTGTAATCCAACAAACCAA+GGG + chr6.4:7473303-7473322 None:intergenic 35.0%
TGAAGGCTCGACTTATAATT+AGG + chr6.4:7472520-7472539 None:intergenic 35.0%
TGAATCGAGGAAAATAGGAT+TGG + chr6.4:7472379-7472398 None:intergenic 35.0%
TGAGATAGTAGGATAAGACT+TGG - chr6.4:7469900-7469919 MS.gene48176:intron 35.0%
TGATTTGACTGCTCAGAATA+AGG - chr6.4:7473548-7473567 MS.gene48176:intron 35.0%
TTGATCCTAAGAGAGCTAAA+AGG - chr6.4:7469658-7469677 MS.gene48176:intron 35.0%
TTGTAACATGTTCTTGTTGG+TGG - chr6.4:7471408-7471427 MS.gene48176:intron 35.0%
TTTACATCGTTGAAGTAGGT+TGG - chr6.4:7472570-7472589 MS.gene48176:intron 35.0%
! AATTTTACGTAGATGGTCCT+AGG - chr6.4:7472313-7472332 MS.gene48176:CDS 35.0%
! ACATTCCTCTTTTATCAAGG+GGG - chr6.4:7471926-7471945 MS.gene48176:intron 35.0%
! AGATATTTGATGAGTTGGAG+TGG + chr6.4:7473382-7473401 None:intergenic 35.0%
! ATTATCCGTCTTCTGTTTTG+TGG - chr6.4:7472167-7472186 MS.gene48176:intron 35.0%
! CACATTCCTCTTTTATCAAG+GGG - chr6.4:7471925-7471944 MS.gene48176:intron 35.0%
! CCATTTTACATCGTTGAAGT+AGG - chr6.4:7472566-7472585 MS.gene48176:intron 35.0%
! CTGACTATTGACTATGTTAG+AGG - chr6.4:7473117-7473136 MS.gene48176:intron 35.0%
! GTGACTTAATTTGACTCAGT+TGG - chr6.4:7469946-7469965 MS.gene48176:intron 35.0%
! TTAAGCGGTGTTGAGTTTAT+GGG - chr6.4:7470484-7470503 MS.gene48176:intron 35.0%
! TTTTCTGATCCATAATCCGA+TGG - chr6.4:7472597-7472616 MS.gene48176:intron 35.0%
!! ATGTTCTTGTTGGTGGTTTA+TGG - chr6.4:7471415-7471434 MS.gene48176:intron 35.0%
!! CTGCAGTACATCTTTTAGTT+AGG + chr6.4:7472459-7472478 None:intergenic 35.0%
!! GTGGTTGATTCTAAGATTAG+GGG - chr6.4:7470883-7470902 MS.gene48176:intron 35.0%
!! TGTGTTTATGATTGGCTTAG+GGG - chr6.4:7470086-7470105 MS.gene48176:intron 35.0%
!!! CAGAGTTTTTTGATGGGTTA+GGG - chr6.4:7469484-7469503 MS.gene48176:CDS 35.0%
!!! CCTTTGTAGTTGTCGTTTTA+AGG + chr6.4:7473017-7473036 None:intergenic 35.0%
!!! GTGGATTCAGAGTTTTTTGA+TGG - chr6.4:7469477-7469496 MS.gene48176:CDS 35.0%
!!! TCAGAGTTTTTTGATGGGTT+AGG - chr6.4:7469483-7469502 MS.gene48176:CDS 35.0%
!!! TCTGATTTTGAGTTGTAACC+CGG - chr6.4:7471476-7471495 MS.gene48176:intron 35.0%
!!! TTTTTTGATGGGTTAGGGTT+TGG - chr6.4:7469489-7469508 MS.gene48176:CDS 35.0%
AACTCGATATACAAGTGAGC+TGG - chr6.4:7471254-7471273 MS.gene48176:intron 40.0%
AAGGAACATTGAGTTTAGGG+TGG - chr6.4:7469971-7469990 MS.gene48176:intron 40.0%
AAGTGTAATCCCACTAAGTG+GGG + chr6.4:7470279-7470298 None:intergenic 40.0%
ACAGCTGAATCGAGGAAAAT+AGG + chr6.4:7472384-7472403 None:intergenic 40.0%
AGAAAGAACTTCAACGCCTT+AGG - chr6.4:7474146-7474165 MS.gene48176:CDS 40.0%
AGGAGAGTAAATCAGATGGA+GGG - chr6.4:7470141-7470160 MS.gene48176:intron 40.0%
AGGATTACTCATCTGTTGCA+TGG + chr6.4:7474251-7474270 None:intergenic 40.0%
AGGGCTTTCTTCCATAATAC+TGG - chr6.4:7473137-7473156 MS.gene48176:intron 40.0%
AGGTATAGTAGTTCCATGGA+TGG - chr6.4:7469555-7469574 MS.gene48176:intron 40.0%
AGTACAGTGTCCAAATGCAA+GGG + chr6.4:7471848-7471867 None:intergenic 40.0%
ATGTAGTTTACCCCACTTAG+TGG - chr6.4:7470266-7470285 MS.gene48176:intron 40.0%
ATTCTGAGCAGTCAAATCAG+TGG + chr6.4:7473547-7473566 None:intergenic 40.0%
CAACAAGCAAAGCTTAGAGA+AGG - chr6.4:7473600-7473619 MS.gene48176:intron 40.0%
CAAGTGTAATCCCACTAAGT+GGG + chr6.4:7470280-7470299 None:intergenic 40.0%
CATGTGTATAGGTACTAGGT+AGG - chr6.4:7471546-7471565 MS.gene48176:intron 40.0%
CTGTAATCCAACAAACCAAG+GGG + chr6.4:7473302-7473321 None:intergenic 40.0%
GAAAGAACTTCAACGCCTTA+GGG - chr6.4:7474147-7474166 MS.gene48176:CDS 40.0%
GAGAACATCCCGTTAAATGA+AGG + chr6.4:7474208-7474227 None:intergenic 40.0%
GATTCTTTGTGTATTCCGTC+TGG - chr6.4:7472807-7472826 MS.gene48176:intron 40.0%
GCTCGACTTATAATTAGGCA+TGG + chr6.4:7472515-7472534 None:intergenic 40.0%
GGGAAGATGTTTAATGACAC+TGG + chr6.4:7472212-7472231 None:intergenic 40.0%
GGGCTTTCTTCCATAATACT+GGG - chr6.4:7473138-7473157 MS.gene48176:intron 40.0%
GGTATAGTAGTTCCATGGAT+GGG - chr6.4:7469556-7469575 MS.gene48176:intron 40.0%
GTCAAATACCCTACTTACGA+TGG - chr6.4:7470582-7470601 MS.gene48176:intron 40.0%
GTCTCTAACTGAAGTTTGTC+GGG - chr6.4:7470400-7470419 MS.gene48176:intron 40.0%
GTTCCATAAACAGTTGTGAC+CGG + chr6.4:7471498-7471517 None:intergenic 40.0%
GTTGCATGTGTATAGGTACT+AGG - chr6.4:7471542-7471561 MS.gene48176:intron 40.0%
TAAAGAAACCCTCGCGAATA+GGG + chr6.4:7470055-7470074 None:intergenic 40.0%
TAACAACTAACTGTCGCTAC+TGG - chr6.4:7472674-7472693 MS.gene48176:intron 40.0%
TAGGAGAGTAAATCAGATGG+AGG - chr6.4:7470140-7470159 MS.gene48176:intron 40.0%
TCAAGTGTAATCCCACTAAG+TGG + chr6.4:7470281-7470300 None:intergenic 40.0%
TCCATAATACTGGGAGAGAT+TGG - chr6.4:7473147-7473166 MS.gene48176:intron 40.0%
TGGTGTGAAGAAATCTATGC+CGG - chr6.4:7469608-7469627 MS.gene48176:intron 40.0%
TGGTTCACAATCAGAATCAG+TGG + chr6.4:7472089-7472108 None:intergenic 40.0%
TGTAGTTTACCCCACTTAGT+GGG - chr6.4:7470267-7470286 MS.gene48176:intron 40.0%
TTAAAGAAACCCTCGCGAAT+AGG + chr6.4:7470056-7470075 None:intergenic 40.0%
TTCCATAAACAGTTGTGACC+GGG + chr6.4:7471497-7471516 None:intergenic 40.0%
! AATGATTCTTTTGCGCCCTA+AGG + chr6.4:7474165-7474184 None:intergenic 40.0%
! AGGAACATTGAGTTTAGGGT+GGG - chr6.4:7469972-7469991 MS.gene48176:intron 40.0%
! ATTTGATGAGTTGGAGTGGT+TGG + chr6.4:7473378-7473397 None:intergenic 40.0%
! GTTAAGCGGTGTTGAGTTTA+TGG - chr6.4:7470483-7470502 MS.gene48176:intron 40.0%
! TCGAGGAAAATAGGATTGGT+TGG + chr6.4:7472375-7472394 None:intergenic 40.0%
! TTTGATGAGTTGGAGTGGTT+GGG + chr6.4:7473377-7473396 None:intergenic 40.0%
!! GTGTTTATGATTGGCTTAGG+GGG - chr6.4:7470087-7470106 MS.gene48176:intron 40.0%
AACCCGGTCACAACTGTTTA+TGG - chr6.4:7471492-7471511 MS.gene48176:intron 45.0%
AACCTATGAAGCACAGACAC+AGG + chr6.4:7471814-7471833 None:intergenic 45.0%
AACGACACATGTTCGACAAC+AGG + chr6.4:7471704-7471723 None:intergenic 45.0%
AAGTTTGTCGGGATACTCTG+AGG - chr6.4:7470411-7470430 MS.gene48176:intron 45.0%
AATCATTTGACTGCCGTTGC+TGG - chr6.4:7474178-7474197 MS.gene48176:CDS 45.0%
ACTACAAAGGGGAGCAATGT+CGG - chr6.4:7473027-7473046 MS.gene48176:intron 45.0%
ACTATCTCACGTCAGCTACA+TGG + chr6.4:7469889-7469908 None:intergenic 45.0%
AGAGGAAGGTGAGTAGACAT+AGG - chr6.4:7469535-7469554 MS.gene48176:intron 45.0%
AGTCACGTAAAAGGACCAGA+CGG + chr6.4:7472825-7472844 None:intergenic 45.0%
AGTTCAGCAAGTTTCTCAGC+CGG + chr6.4:7469630-7469649 None:intergenic 45.0%
ATGATTGCACAGCTGAATCG+AGG + chr6.4:7472392-7472411 None:intergenic 45.0%
ATGGACTCATCAGAGTCCAT+CGG + chr6.4:7469414-7469433 None:intergenic 45.0%
ATGGACTCTGATGAGTCCAT+CGG - chr6.4:7469414-7469433 MS.gene48176:CDS 45.0%
CGTTCTGATCAACCCTTCAA+CGG - chr6.4:7474307-7474326 MS.gene48176:CDS 45.0%
GAGCAATGTCGGAATTCTCA+AGG - chr6.4:7473038-7473057 MS.gene48176:intron 45.0%
GAGGTTGGAGATATCGAAGT+CGG + chr6.4:7469367-7469386 None:intergenic 45.0%
GAGTACAGTGTCCAAATGCA+AGG + chr6.4:7471849-7471868 None:intergenic 45.0%
GATATACAAGTGAGCTGGAG+AGG - chr6.4:7471259-7471278 MS.gene48176:intron 45.0%
GCCAATCTCTCCCAGTATTA+TGG + chr6.4:7473151-7473170 None:intergenic 45.0%
GCGTTACAACCTATGAAGCA+CGG - chr6.4:7471656-7471675 MS.gene48176:intron 45.0%
GGATACTATGACGAGCATCT+GGG - chr6.4:7470558-7470577 MS.gene48176:intron 45.0%
GTTAAGCGACACTCAGTTTG+TGG - chr6.4:7470339-7470358 MS.gene48176:intron 45.0%
TGAAATTAACAGCGTGCGAG+AGG + chr6.4:7473447-7473466 None:intergenic 45.0%
TGCACAACTTACAGTCCTTC+AGG - chr6.4:7471320-7471339 MS.gene48176:intron 45.0%
TGTAGCCAATCTCTGTGACT+CGG - chr6.4:7470313-7470332 MS.gene48176:intron 45.0%
TGTAGCTGACGTGAGATAGT+AGG - chr6.4:7469889-7469908 MS.gene48176:intron 45.0%
TTGAGTTTATGGGAGGACTG+AGG - chr6.4:7470494-7470513 MS.gene48176:intron 45.0%
TTGGAGATATCGAAGTCGGA+CGG + chr6.4:7469363-7469382 None:intergenic 45.0%
! AACATTGAGTTTAGGGTGGG+GGG - chr6.4:7469975-7469994 MS.gene48176:intron 45.0%
! AAGCTTTGCTTGTTGCTCGA+AGG + chr6.4:7473595-7473614 None:intergenic 45.0%
! AAGGGTTGATCAGAACGAGA+AGG + chr6.4:7474304-7474323 None:intergenic 45.0%
! CTTCCTTTTTATCCTGGCCT+AGG + chr6.4:7472333-7472352 None:intergenic 45.0%
! GAACATTGAGTTTAGGGTGG+GGG - chr6.4:7469974-7469993 MS.gene48176:intron 45.0%
! GAGATGGGGTTGTTTGAAGT+TGG - chr6.4:7469582-7469601 MS.gene48176:intron 45.0%
! GGAACATTGAGTTTAGGGTG+GGG - chr6.4:7469973-7469992 MS.gene48176:intron 45.0%
!! AAAGGAGTGCCATCGGATTA+TGG + chr6.4:7472609-7472628 None:intergenic 45.0%
!! ATGATTGGCTTAGGGGGTTT+GGG - chr6.4:7470093-7470112 MS.gene48176:intron 45.0%
!! GGGTTGTTTGAAGTTGGTGA+TGG - chr6.4:7469588-7469607 MS.gene48176:intron 45.0%
!! TATGATTGGCTTAGGGGGTT+TGG - chr6.4:7470092-7470111 MS.gene48176:intron 45.0%
!! TTTGATGGGTTAGGGTTTGG+TGG - chr6.4:7469492-7469511 MS.gene48176:CDS 45.0%
AACAAACCAAGGGGACCATG+TGG + chr6.4:7473293-7473312 None:intergenic 50.0%
AAGCGACACTCAGTTTGTGG+TGG - chr6.4:7470342-7470361 MS.gene48176:intron 50.0%
AAGGGGAAAAGGTGGAAGAG+AGG - chr6.4:7469517-7469536 MS.gene48176:intron 50.0%
ACAAACCAAGGGGACCATGT+GGG + chr6.4:7473292-7473311 None:intergenic 50.0%
ACCAACCGAGTCACAGAGAT+TGG + chr6.4:7470321-7470340 None:intergenic 50.0%
AGCGACACTCAGTTTGTGGT+GGG - chr6.4:7470343-7470362 MS.gene48176:intron 50.0%
AGGTGGTGTCTGAGTGAGAA+CGG + chr6.4:7469299-7469318 None:intergenic 50.0%
ATCCAGGCATTCAACCCACA+TGG - chr6.4:7473275-7473294 MS.gene48176:intron 50.0%
CTACACGCTTCCCTTGCATT+TGG - chr6.4:7471835-7471854 MS.gene48176:intron 50.0%
GCATCTCAGGAGTTTGTCTG+TGG - chr6.4:7469458-7469477 MS.gene48176:CDS 50.0%
GGAAAAGGTGGAAGAGAGGA+AGG - chr6.4:7469521-7469540 MS.gene48176:intron 50.0%
GGACTGAGGTTTGAACTCAG+TGG - chr6.4:7470369-7470388 MS.gene48176:intron 50.0%
GGACTGTAAGTTGTGCAGAG+AGG + chr6.4:7471317-7471336 None:intergenic 50.0%
GGGATACTATGACGAGCATC+TGG - chr6.4:7470557-7470576 MS.gene48176:intron 50.0%
GGTCCTAGGCCAGGATAAAA+AGG - chr6.4:7472327-7472346 MS.gene48176:CDS 50.0%
GGTTGATCAGAACGAGAAGG+CGG + chr6.4:7474301-7474320 None:intergenic 50.0%
GTCCTGTGTCTGTGCTTCAT+AGG - chr6.4:7471809-7471828 MS.gene48176:intron 50.0%
TCGTGGTCGCTCTAACTTCA+TGG - chr6.4:7474330-7474349 MS.gene48176:CDS 50.0%
TGGACTCATCAGAGTCCATC+GGG + chr6.4:7469413-7469432 None:intergenic 50.0%
TGGACTCTGATGAGTCCATC+GGG - chr6.4:7469415-7469434 MS.gene48176:CDS 50.0%
TGGAGATATCGAAGTCGGAC+GGG + chr6.4:7469362-7469381 None:intergenic 50.0%
TTCCATGGATGGGTCTGAGA+TGG - chr6.4:7469566-7469585 MS.gene48176:intron 50.0%
! AGCGGTGTTGAGTTTATGGG+AGG - chr6.4:7470487-7470506 MS.gene48176:intron 50.0%
! TCCATGGATGGGTCTGAGAT+GGG - chr6.4:7469567-7469586 MS.gene48176:intron 50.0%
!! ACATGGTCCCCTTGGTTTGT+TGG - chr6.4:7473292-7473311 MS.gene48176:intron 50.0%
!! ACCATGGAAAGGAGTGCCAT+CGG + chr6.4:7472616-7472635 None:intergenic 50.0%
!! CGTCGAAGTTTGCTGCGAAA+CGG + chr6.4:7469323-7469342 None:intergenic 50.0%
!! GAAGTTTGCTGCGAAACGGA+AGG + chr6.4:7469319-7469338 None:intergenic 50.0%
!! GGTTAGGGTTTGGTGGTGAA+GGG - chr6.4:7469499-7469518 MS.gene48176:intron 50.0%
!! GTTAGGGTTTGGTGGTGAAG+GGG - chr6.4:7469500-7469519 MS.gene48176:intron 50.0%
!! GTTTGGTGGTGAAGGGGAAA+AGG - chr6.4:7469506-7469525 MS.gene48176:intron 50.0%
AACAGGACACGCCTAACCTG+AGG + chr6.4:7471687-7471706 None:intergenic 55.0%
ACCCTCGCGAATAGGGTCTT+TGG + chr6.4:7470048-7470067 None:intergenic 55.0%
ATCGGGAAGTCAGCGTCAGA+GGG - chr6.4:7469432-7469451 MS.gene48176:CDS 55.0%
ATGAAGCACGGACACTCCTC+AGG - chr6.4:7471668-7471687 MS.gene48176:intron 55.0%
ATGCCAGGTTGTGTCTGCTG+GGG + chr6.4:7474277-7474296 None:intergenic 55.0%
CACTCCTTTCCATGGTGCAG+CGG - chr6.4:7472620-7472639 MS.gene48176:intron 55.0%
CATGCCAGGTTGTGTCTGCT+GGG + chr6.4:7474278-7474297 None:intergenic 55.0%
CGACACTCAGTTTGTGGTGG+GGG - chr6.4:7470345-7470364 MS.gene48176:intron 55.0%
CTGCTGCACGATCGAAAGAG+AGG - chr6.4:7471229-7471248 MS.gene48176:intron 55.0%
GATCAACCCTTCAACGGTCG+TGG - chr6.4:7474313-7474332 MS.gene48176:CDS 55.0%
GCCAAAGACCCTATTCGCGA+GGG - chr6.4:7470044-7470063 MS.gene48176:CDS 55.0%
GCGACACTCAGTTTGTGGTG+GGG - chr6.4:7470344-7470363 MS.gene48176:intron 55.0%
TACGTAGATGGTCCTAGGCC+AGG - chr6.4:7472318-7472337 MS.gene48176:CDS 55.0%
TCCGATGGCACTCCTTTCCA+TGG - chr6.4:7472612-7472631 MS.gene48176:intron 55.0%
TGCCAAAGACCCTATTCGCG+AGG - chr6.4:7470043-7470062 MS.gene48176:CDS 55.0%
TGGTGTCTGAGTGAGAACGG+CGG + chr6.4:7469296-7469315 None:intergenic 55.0%
TTCAACCCACATGGTCCCCT+TGG - chr6.4:7473284-7473303 MS.gene48176:intron 55.0%
! ATTGAGTTTAGGGTGGGGGG+AGG - chr6.4:7469978-7469997 MS.gene48176:intron 55.0%
! CCATGGATGGGTCTGAGATG+GGG - chr6.4:7469568-7469587 MS.gene48176:intron 55.0%
! GACCATGTGGGTTGAATGCC+TGG + chr6.4:7473280-7473299 None:intergenic 55.0%
! GTTTGCTGCGAAACGGAAGG+TGG + chr6.4:7469316-7469335 None:intergenic 55.0%
! TGGTGGTGAAGGGGAAAAGG+TGG - chr6.4:7469509-7469528 MS.gene48176:intron 55.0%
! TTGAGTTTAGGGTGGGGGGA+GGG - chr6.4:7469979-7469998 MS.gene48176:intron 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG + chr6.4:7471668-7471687 None:intergenic 55.0%
!! GCCAATCTCTGTGACTCGGT+TGG - chr6.4:7470317-7470336 MS.gene48176:intron 55.0%
!! GGGTTAGGGTTTGGTGGTGA+AGG - chr6.4:7469498-7469517 MS.gene48176:intron 55.0%
!! GGTTTGTTGGGGGTGCTCTA+AGG - chr6.4:7470010-7470029 MS.gene48176:intron 55.0%
AGAGCGACCACGACCGTTGA+AGG + chr6.4:7474323-7474342 None:intergenic 60.0%
AGTCCATCGGGACAGCGTCA+GGG + chr6.4:7469401-7469420 None:intergenic 60.0%
ATCGAAGTCGGACGGGTCGA+AGG + chr6.4:7469355-7469374 None:intergenic 60.0%
CAACCCCAGCAGACACAACC+TGG - chr6.4:7474271-7474290 MS.gene48176:CDS 60.0%
CATCGGGAAGTCAGCGTCAG+AGG - chr6.4:7469431-7469450 MS.gene48176:CDS 60.0%
CATGCCGCTGCACCATGGAA+AGG + chr6.4:7472627-7472646 None:intergenic 60.0%
CCCCATCTCAGACCCATCCA+TGG + chr6.4:7469571-7469590 None:intergenic 60.0%
GAGCGACCACGACCGTTGAA+GGG + chr6.4:7474322-7474341 None:intergenic 60.0%
GCACGGACACTCCTCAGGTT+AGG - chr6.4:7471673-7471692 MS.gene48176:intron 60.0%
GCATGCCAGGTTGTGTCTGC+TGG + chr6.4:7474279-7474298 None:intergenic 60.0%
GGAAGTCAGCGTCAGAGGGA+CGG - chr6.4:7469436-7469455 MS.gene48176:CDS 60.0%
GGTTGTGTCTGCTGGGGTTG+AGG + chr6.4:7474271-7474290 None:intergenic 60.0%
TGAGTGAGAACGGCGGTGGT+GGG + chr6.4:7469289-7469308 None:intergenic 60.0%
TGTCTGAGTGAGAACGGCGG+TGG + chr6.4:7469293-7469312 None:intergenic 60.0%
! CACTCAGTTTGTGGTGGGGG+AGG - chr6.4:7470348-7470367 MS.gene48176:intron 60.0%
! TGAGTTTAGGGTGGGGGGAG+GGG - chr6.4:7469980-7469999 MS.gene48176:intron 60.0%
! TTTGTGGTGGGGGAGGACTG+AGG - chr6.4:7470355-7470374 MS.gene48176:intron 60.0%
!! AGGGGGCGCTGAGGTTTGTT+GGG - chr6.4:7469998-7470017 MS.gene48176:intron 60.0%
!! CTCTGACGCTGACTTCCCGA+TGG + chr6.4:7469433-7469452 None:intergenic 60.0%
ATCGGGACAGCGTCAGGGGA+CGG + chr6.4:7469396-7469415 None:intergenic 65.0%
CGTCAGAGGGACGGCATCTC+AGG - chr6.4:7469445-7469464 MS.gene48176:CDS 65.0%
CTGAGTGAGAACGGCGGTGG+TGG + chr6.4:7469290-7469309 None:intergenic 65.0%
GAACGAGAAGGCGGCATGCC+AGG + chr6.4:7474292-7474311 None:intergenic 65.0%
GAGTCCATCGGGACAGCGTC+AGG + chr6.4:7469402-7469421 None:intergenic 65.0%
GCACTCATGCCGCTGCACCA+TGG + chr6.4:7472632-7472651 None:intergenic 65.0%
GTCCATCGGGACAGCGTCAG+GGG + chr6.4:7469400-7469419 None:intergenic 65.0%
! GAGTTTAGGGTGGGGGGAGG+GGG - chr6.4:7469981-7470000 MS.gene48176:intron 65.0%
! TGGTGGGTCCCACGTGATGG+TGG + chr6.4:7469273-7469292 None:intergenic 65.0%
!! GAGGGGGCGCTGAGGTTTGT+TGG - chr6.4:7469997-7470016 MS.gene48176:intron 65.0%
!! GGGGCGCTGAGGTTTGTTGG+GGG - chr6.4:7470000-7470019 MS.gene48176:intron 65.0%
!! GGGGGCGCTGAGGTTTGTTG+GGG - chr6.4:7469999-7470018 MS.gene48176:intron 65.0%
!! GGGGTGCTCTAAGGCGTGTC+TGG - chr6.4:7470019-7470038 MS.gene48176:CDS 65.0%
ACAGCGTCAGGGGACGGGAG+AGG + chr6.4:7469390-7469409 None:intergenic 70.0%
AGGGGACGGGAGAGGGAGGT+TGG + chr6.4:7469382-7469401 None:intergenic 70.0%
CAGCGTCAGGGGACGGGAGA+GGG + chr6.4:7469389-7469408 None:intergenic 70.0%
GTCCCCTGACGCTGTCCCGA+TGG - chr6.4:7469395-7469414 MS.gene48176:CDS 70.0%
TCGGGACAGCGTCAGGGGAC+GGG + chr6.4:7469395-7469414 None:intergenic 70.0%
!! CGGTGGTGGGTCCCACGTGA+TGG + chr6.4:7469276-7469295 None:intergenic 70.0%
CGTCAGGGGACGGGAGAGGG+AGG + chr6.4:7469386-7469405 None:intergenic 75.0%
!!! GGTGGGGGGAGGGGGCGCTG+AGG - chr6.4:7469989-7470008 MS.gene48176:intron 85.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 7469267 7474372 7469267 ID=MS.gene48176
chr6.4 mRNA 7469267 7474372 7469267 ID=MS.gene48176.t1;Parent=MS.gene48176
chr6.4 exon 7473960 7474372 7473960 ID=MS.gene48176.t1.exon1;Parent=MS.gene48176.t1
chr6.4 CDS 7473960 7474372 7473960 ID=cds.MS.gene48176.t1;Parent=MS.gene48176.t1
chr6.4 exon 7472298 7472430 7472298 ID=MS.gene48176.t1.exon2;Parent=MS.gene48176.t1
chr6.4 CDS 7472298 7472430 7472298 ID=cds.MS.gene48176.t1;Parent=MS.gene48176.t1
chr6.4 exon 7470018 7470102 7470018 ID=MS.gene48176.t1.exon3;Parent=MS.gene48176.t1
chr6.4 CDS 7470018 7470102 7470018 ID=cds.MS.gene48176.t1;Parent=MS.gene48176.t1
chr6.4 exon 7469267 7469511 7469267 ID=MS.gene48176.t1.exon4;Parent=MS.gene48176.t1
chr6.4 CDS 7469267 7469511 7469267 ID=cds.MS.gene48176.t1;Parent=MS.gene48176.t1
Gene Sequence

>MS.gene48176

ATGCCACCATCACGTGGGACCCACCACCGCCGTTCTCACTCAGACACCACCTTCCGTTTCGCAGCAAACTTCGACGATCTTCTCACCTTCGACCCGTCCGACTTCGATATCTCCAACCTCCCTCTCCCGTCCCCTGACGCTGTCCCGATGGACTCTGATGAGTCCATCGGGAAGTCAGCGTCAGAGGGACGGCATCTCAGGAGTTTGTCTGTGGATTCAGAGTTTTTTGATGGGTTAGGGTTTGGTGGTGAAGGGGAAAAGGTGGAAGAGAGGAAGGTGAGTAGACATAGGTATAGTAGTTCCATGGATGGGTCTGAGATGGGGTTGTTTGAAGTTGGTGATGGTGTGAAGAAATCTATGCCGGCTGAGAAACTTGCTGAACTTGCTCTTATTGATCCTAAGAGAGCTAAAAGGTTTATCATCATCTTCATCATCACAAGCATAATCACTTTTTGAAGTTTGTTTTGGAAGAAATTAATTTTATTTATGTACTAAATTTAAGGTTCTTGTTTTTCTTTTTATGAAAAAAAAAATTAATATTTAGTTTTTAATTAGAGTCTATATAAGTTTAATGAGTATGTGGTATGATATATGATAGAATATTATAGCGTTGTTTGATCCATGTAGCTGACGTGAGATAGTAGGATAAGACTTGGTTGTTGTTGTTTGTTTAATTTGTGTGACTTAATTTGACTCAGTTGGTTAAGGAACATTGAGTTTAGGGTGGGGGGAGGGGGCGCTGAGGTTTGTTGGGGGTGCTCTAAGGCGTGTCTGGTTGCCAAAGACCCTATTCGCGAGGGTTTCTTTAAAAAAATTGTATGTGTTTATGATTGGCTTAGGGGGTTTGGGTATGTAGAGAGAAGATTATGTAGTTAGGAGAGTAAATCAGATGGAGGGTTGTCAAATTACTACAAGTAGAGGAAGACCTAGAAAAACTTTTAAGAGAAGTTATTTAGAAAGATTTAGAGATTGATAGAACTTTATGACGTTGTTTGATGCATGTAGTTTACCCCACTTAGTGGGATTACACTTGATTATTGTTGTTATGTAGCCAATCTCTGTGACTCGGTTGGTTAAGCGACACTCAGTTTGTGGTGGGGGAGGACTGAGGTTTGAACTCAGTGGAGAGATTAGTCTCTAACTGAAGTTTGTCGGGATACTCTGAGGAGCATAATACCGTAAATTATATATACGTTTACCTAATTTGTGAGTCATGGTTAAGCGGTGTTGAGTTTATGGGAGGACTGAGGTTTGATCTCAGAAGAGATTAGTCTCGTACTAAAGTTTCTTGGGATACTATGACGAGCATCTGGGTGTCAAATACCCTACTTACGATGGTTTATTAAAACAAAATTAATGTATTTATGATCGATTCTAAGTTTAGAAGTTTGGAATCTGGAAGTTAATCCTATACATATGGAATTTCTGGTCAATGAGTAAAACCAGTTGTGTTTGTGAATTTGATCTTGTCATAGATTTGTTTTAGTTTTTTATGTGTCTTTTATTTTGTAATGGATAATTTGGAACACAATTAGATTAAAATTTGTTTTCACCCTTTGTTTTAAGATGTTTTTTCTTCACAAAAAGATCTTGTTCGTGTTAAATTGATTGTGTTTGTGGTTGATTCTAAGATTAGGGGTTTGAATTTTGAACCTATATTTCAGATGGTTAATCCTAGGACCAACATATATAGAATTTTAGTCAAAGACTAAAAACAGTTGTGTTTGTGTGTCTGATCTTATCAGAAATTTGAATTTTAGTTTAGTGTTTTATTTTGTAATTGATGATTGTAATGAATTGTTTCTGTTGATGATAACATGTTTTCTAATTATATGATGTAACATGAGTTTTTCTGAATAATGAAAAGAAAAAAAAGATAAAAGGGTGTTTGGATTATGTAGAATTTGGCTTGATGCTTAAAATGCTGTATGTTTGTTTACAGGATTCTTGCTAATAGGCAATCTGCTGCACGATCGAAAGAGAGGAAAACTCGATATACAAGTGAGCTGGAGAGGAAAGTGCAGACGCTTCAAACTGAAGCAACTAACCTCTCTGCACAACTTACAGTCCTTCAGGTATGTTATTTCCTTTTCATTTCACTGTTCTGAATTGTAGCTTTCAATGAATAGATGTGAATTTGTTTGTAACATGTTCTTGTTGGTGGTTTATGGAGCCCTCCATCTTTAACAATGATGTAGATTTATTTCTGTCTGATTTTGAGTTGTAACCCGGTCACAACTGTTTATGGAACCCACATAATACCAAGTATATGCATGTTGCATGTGTATAGGTACTAGGTAGGTATTTATGTACACATATACATACATACATACAAATGTATAGTTTGGTGAAATTAAATTTAATTACTCTATTACATCCTATATAATTTGCGTTACAACCTATGAAGCACGGACACTCCTCAGGTTAGGCGTGTCCTGTTGTCGAACATGTGTCGTTGTCCGACACCAATACATATGATTACACTGAATTATGTCATTTTCTTAAATTATTATCAGTGTCGATGCGTCAGTGTACGTGTCGTGTCCTGTGTCTGTGCTTCATAGGTTACTACACGCTTCCCTTGCATTTGGACACTGTACTCATAACTTTGAACTGGCTTTGAAGCGTACATATCATCTGAACTTTTCTATAAATTTTCACATTCCTCTTTTATCAAGGGGGTAATTATTTAAATTTAAAAAAGTTGCGATCTCTGTAATTTTACGCTTGATTTTTTTTCCCCTTATCGATTATCATACAAATCTTTTAAGTCTTATCTATTAAGTGTTCAATGAAATAGGGCTGTTTTGATCAAATTTCCACTGATTCTGATTGTGAACCATTAAACCTGAGACTACTTAATCTGAAACAATTATTGACCTCATTTTGATTATAATTGCATTATCCGTCTTCTGTTTTGTGGTTTAGTTCGTTATTCACTACCAGTGTCATTAAACATCTTCCCTACTTTCTACATTTTCAAAGTATTTTCACTATAAGTAACTCTTTTGTGAGCTCTGCCAATTACGTGCTTATATTTCCACAAAATTTTACGTAGATGGTCCTAGGCCAGGATAAAAAGGAAGTTTTTTTTTTCTCTAAAGTCCAACCAATCCTATTTTCCTCGATTCAGCTGTGCAATCATGCTTACGAAAAATTGGTTTCTGATGCTGTCACTGTCCATGTTTTCCTAACTAAAAGATGTACTGCAGTTTGTCATACAGTCTGCAGTGATCTAATTATTTCCATGCCTAATTATAAGTCGAGCCTTCACCATATCATATAAGATTTTTCTGAAACCATTTTACATCGTTGAAGTAGGTTGGTTTATTTTCTGATCCATAATCCGATGGCACTCCTTTCCATGGTGCAGCGGCATGAGTGCCAGAAATAAAATCAAATTTATGTAACAACTAACTGTCGCTACTGGATGCATATCTTCGCATAGATAGATGACATGATTGCTCCATAAATTAATCACAGTATCTTTTTATATGCCAATTTTGTGGTATTGTGATGACTGATGAGTGAAGATGACAAGATTCTTTGTGTATTCCGTCTGGTCCTTTTACGTGACTTTAGTAGAATAATAATTTTGTTCCTATTTATGCCTTTTTCAAAGTTCATTACAACACTCACTATTATTTTGTCAAAAAAGTTAAACAAGATGATAAATAGTTTAGGCTATTATAGGAAAAAGACAAATAATTCAACAAAATTTAGTAATTTTCTTGGTATGTTAAATGACCTTAAAACGACAACTACAAAGGGGAGCAATGTCGGAATTCTCAAGGATTATTCCATTTAGTTACTTCTATGTAACACAGTGGTCTTAGTTCCTTTGAGTTTTCTGACTATTGACTATGTTAGAGGGCTTTCTTCCATAATACTGGGAGAGATTGGCATTGTTCTATAATATTAGATTTACGATTTTGAAAATAGATGTTGCGATTCTCGATTTGATATTAACCATCCTTAAGACAGATATTTTTGAGTAAAGTGGTAATTATCCAGGCATTCAACCCACATGGTCCCCTTGGTTTGTTGGATTACAGATTCAAAACATAATTGTTGCCTTTTCATGTGATTTTTAGATGGATAGATGGTCCCAACCACTCCAACTCATCAAATATCTATGATCTAAATTTTTCCTGACTGAATTAATTTAAATGTTATGCCTCTCGCACGCTGTTAATTTCAATTTGTGTAAACTTAAAAAATGTGCAAAAGAATAAAAAGGAAGCAAACTAATCATTGAATCATGATGCAGAGAGACACCACTGATTTGACTGCTCAGAATAAGGAGCTCAAAATGAAGTTAGATGCCTTCGAGCAACAAGCAAAGCTTAGAGAAGGTATGTATCGTTTCATATTTCTTGATCCATAAAAAAGTGGATTTTGCTTCCCCCTTTATCACATCTTTATTGAATTGGACTAGAAAAAGGCTGAATCATTCATTTGTTTGTTGTGCGAAAAAAGATCTTGTGAATCTTCATTAATATCTATCAATTTTACCTTTTTTAAAACTATGCTATAAAAGTTGGCTTAAATACAGTTTTGGTCCTGCTATTTTGCATCATTTACGATTTTGGACCCTTAGTTTTGAAAATATCCGATTTTTCCCTATCTAACGTATTTAGGGATGCTTTTATAAGCGAGATTAAATGCGAATCCACTTAGACAATGTCACACTTTAAATTTAGTTGCTTTTGTGATATAAATCGGTGTATATTTTGATGACATGAAGATTAATTCCAAAGAAATATCATTGCTTGAAATTTGACCATTTTTGCAAAACACTTTTGCTTGTTATCAAGTTTTACCATTTAAATATGAACATGGCTACACTTTGTGATTGCAGATCTCAATGAAGCGTTGAAGAAAGAACTTCAACGCCTTAGGGCGCAAAAGAATCATTTGACTGCCGTTGCTGGTAATCCTTCATTTAACGGGATGTTCTCGCAATTTGCTACACAATTAACCATGCAACAGATGAGTAATCCTCAACCCCAGCAGACACAACCTGGCATGCCGCCTTCTCGTTCTGATCAACCCTTCAACGGTCGTGGTCGCTCTAACTTCATGGACTTCAATTACCAAAAGTAG
Protein sequence

>MS.gene48176.t1

MPPSRGTHHRRSHSDTTFRFAANFDDLLTFDPSDFDISNLPLPSPDAVPMDSDESIGKSASEGRHLRSLSVDSEFFDGLGFGGEGEKVEERKVSRHRYSSSMDGSEMGLFEVGDGVKKSMPAEKLAELALIDPKRAKRILANRQSAARSKERKTRYTSELERKVQTLQTEATNLSAQLTVLQRDTTDLTAQNKELKMKLDAFEQQAKLREDLNEALKKELQRLRAQKNHLTAVAGNPSFNGMFSQFATQLTMQQMSNPQPQQTQPGMPPSRSDQPFNGRGRSNFMDFNYQK