Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48190.t1 | RHN58091.1 | 97.9 | 385 | 8 | 0 | 1 | 385 | 8 | 392 | 6.50E-222 | 779.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48190.t1 | Q9FKH1 | 44.5 | 389 | 194 | 7 | 1 | 382 | 70 | 443 | 3.2e-84 | 313.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48190.t1 | G7KEL4 | 97.9 | 385 | 8 | 0 | 1 | 385 | 96 | 480 | 4.7e-222 | 779.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene48190.t1 | TF | SAP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48190.t1 | MTR_5g097060 | 97.922 | 385 | 8 | 0 | 1 | 385 | 96 | 480 | 0.0 | 772 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48190.t1 | AT5G35770 | 44.216 | 389 | 195 | 7 | 1 | 382 | 70 | 443 | 3.71e-100 | 304 |
Find 128 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACACTTCTATACGTTTAT+TGG | 0.079855 | 5.4:-76232769 | MS.gene48190:CDS |
| TTATTAGGGTGCATGAATTT+AGG | 0.164199 | 5.4:-76232957 | MS.gene48190:CDS |
| GTCTACATTGCTATTATTAA+TGG | 0.164360 | 5.4:-76233479 | MS.gene48190:CDS |
| TCATGGTTAAGAGGTTTATT+AGG | 0.167477 | 5.4:-76232972 | MS.gene48190:CDS |
| TGCCATCCTTGAACCGTTTC+CGG | 0.223972 | 5.4:+76233260 | None:intergenic |
| GCGTGAGTAGGTTTAGATTA+AGG | 0.227131 | 5.4:-76232998 | MS.gene48190:CDS |
| GGGTATGTTATAACCTATTC+TGG | 0.255175 | 5.4:-76232936 | MS.gene48190:CDS |
| CCTGCACGACGGGCAATTAA+TGG | 0.265227 | 5.4:-76233431 | MS.gene48190:CDS |
| CCTTCTCCATCATCTCTAAC+TGG | 0.275457 | 5.4:+76232849 | None:intergenic |
| TCCGTTTCGGGAATTGTAAT+TGG | 0.284357 | 5.4:-76233539 | MS.gene48190:CDS |
| TATTAGGGTGCATGAATTTA+GGG | 0.289123 | 5.4:-76232956 | MS.gene48190:CDS |
| GTGCACATGTTAGCACATTT+TGG | 0.290721 | 5.4:-76233598 | MS.gene48190:CDS |
| TATATGTTGGCCACGCGGGC+GGG | 0.296183 | 5.4:-76233346 | MS.gene48190:CDS |
| CGTGAGTAGGTTTAGATTAA+GGG | 0.323549 | 5.4:-76232997 | MS.gene48190:CDS |
| CATGGTTAAGAGGTTTATTA+GGG | 0.328702 | 5.4:-76232971 | MS.gene48190:CDS |
| CTCGCCTTCGCGAGATTAGA+TGG | 0.334905 | 5.4:-76233506 | MS.gene48190:CDS |
| GCAGGAATGGGCCCGGGTAT+TGG | 0.339605 | 5.4:+76233449 | None:intergenic |
| TCTACATTGCTATTATTAAT+GGG | 0.340728 | 5.4:-76233478 | MS.gene48190:CDS |
| TCCAACCATGGTCTTCTATT+CGG | 0.353047 | 5.4:-76233575 | MS.gene48190:CDS |
| ACATCACGTAATAGAATCTC+TGG | 0.371896 | 5.4:+76233131 | None:intergenic |
| ATAACCTATTCTGGTGGGTC+TGG | 0.373210 | 5.4:-76232927 | MS.gene48190:CDS |
| GGCAGCGGCAGATGAGGTTT+TGG | 0.378783 | 5.4:+76233693 | None:intergenic |
| ACGGAACAGCGCGTGTTTGT+TGG | 0.386206 | 5.4:-76233299 | MS.gene48190:CDS |
| AGGATTCATTGTAGGATCAT+TGG | 0.389444 | 5.4:-76233096 | MS.gene48190:CDS |
| AGCTACTACAAATTCTCTTT+CGG | 0.392581 | 5.4:+76233193 | None:intergenic |
| CGTGATGTAGTGTCCATAAC+AGG | 0.395954 | 5.4:-76233116 | MS.gene48190:CDS |
| GGTTTAGATTAAGGGCTTCA+TGG | 0.398867 | 5.4:-76232989 | MS.gene48190:CDS |
| TTCATTAACCGATCCGGAAA+CGG | 0.410471 | 5.4:-76233273 | MS.gene48190:CDS |
| CACCGGGAGACATGCTTTAG+TGG | 0.414725 | 5.4:-76233744 | MS.gene48190:CDS |
| CCCGAAACGGATTGTGAAAA+CGG | 0.417479 | 5.4:+76233551 | None:intergenic |
| AGCTTGCACAAGTACAAGAT+TGG | 0.422430 | 5.4:-76233174 | MS.gene48190:CDS |
| CAAACCAGACCCACCAGAAT+AGG | 0.423103 | 5.4:+76232923 | None:intergenic |
| ACCGACCGGTTCAACTAATT+CGG | 0.424968 | 5.4:+76233229 | None:intergenic |
| AGAGGCTCACGAGACGCATC+TGG | 0.428365 | 5.4:-76233841 | MS.gene48190:CDS |
| TCCAATTACAATTCCCGAAA+CGG | 0.436742 | 5.4:+76233538 | None:intergenic |
| CGGGCCCATTCCTGCACGAC+GGG | 0.438206 | 5.4:-76233441 | MS.gene48190:CDS |
| GGCTCTAGTCGTTGGTGGGT+TGG | 0.439072 | 5.4:-76233371 | MS.gene48190:CDS |
| TCCTACAATGAATCCTGTTA+TGG | 0.441153 | 5.4:+76233103 | None:intergenic |
| TCTCCCGGTGGTAAAGTTCC+TGG | 0.441224 | 5.4:+76233757 | None:intergenic |
| TCCTTGAACCGTTTCCGGAT+CGG | 0.441558 | 5.4:+76233265 | None:intergenic |
| CCATTAATTGCCCGTCGTGC+AGG | 0.443293 | 5.4:+76233431 | None:intergenic |
| TTAAGGGCTTCATGGTTAAG+AGG | 0.447013 | 5.4:-76232981 | MS.gene48190:CDS |
| ATATGTTGGCCACGCGGGCG+GGG | 0.450684 | 5.4:-76233345 | MS.gene48190:CDS |
| AATTGCCCGTCGTGCAGGAA+TGG | 0.458917 | 5.4:+76233436 | None:intergenic |
| ATTGCCCGTCGTGCAGGAAT+GGG | 0.459648 | 5.4:+76233437 | None:intergenic |
| ACCGATCCGGAAACGGTTCA+AGG | 0.460400 | 5.4:-76233266 | MS.gene48190:CDS |
| CCGTCGTGCAGGAATGGGCC+CGG | 0.461152 | 5.4:+76233442 | None:intergenic |
| ATGGGCCCGGGTATTGGTCC+AGG | 0.465999 | 5.4:+76233455 | None:intergenic |
| GTCTGGTTTGTTAAGAGTGT+GGG | 0.468579 | 5.4:-76232910 | MS.gene48190:CDS |
| GTTAACCGAATTAGTTGAAC+CGG | 0.476077 | 5.4:-76233234 | MS.gene48190:CDS |
| CAAATTCTCTTTCGGTGACT+CGG | 0.479960 | 5.4:+76233201 | None:intergenic |
| TTGCCGGCTCTAGTCGTTGG+TGG | 0.480637 | 5.4:-76233376 | MS.gene48190:CDS |
| TGCCGGCTCTAGTCGTTGGT+GGG | 0.484033 | 5.4:-76233375 | MS.gene48190:CDS |
| ATTGCTATTATTAATGGGCC+TGG | 0.486088 | 5.4:-76233473 | MS.gene48190:CDS |
| CGACGAAGCCGCAGGCGAGG+TGG | 0.487527 | 5.4:+76233654 | None:intergenic |
| GGAGTATTAGTAGAATTTGC+CGG | 0.489467 | 5.4:-76233392 | MS.gene48190:CDS |
| TTATATGTTGGCCACGCGGG+CGG | 0.490183 | 5.4:-76233347 | MS.gene48190:CDS |
| ACGCTCCCAGTTAGAGATGA+TGG | 0.491914 | 5.4:-76232855 | MS.gene48190:CDS |
| ATCTAATCTCGCGAAGGCGA+GGG | 0.494316 | 5.4:+76233508 | None:intergenic |
| TCAAATATGGGACGCGCACA+CGG | 0.496233 | 5.4:-76233318 | MS.gene48190:CDS |
| CCGAAACGGATTGTGAAAAC+GGG | 0.497568 | 5.4:+76233552 | None:intergenic |
| TGGCGGTTCATTAACCGATC+CGG | 0.497586 | 5.4:-76233279 | MS.gene48190:CDS |
| CATCTAATCTCGCGAAGGCG+AGG | 0.498179 | 5.4:+76233507 | None:intergenic |
| TGATCTCCTGGATCATATTG+TGG | 0.499584 | 5.4:+76233719 | None:intergenic |
| GAACAGCGCGTGTTTGTTGG+CGG | 0.505393 | 5.4:-76233296 | MS.gene48190:CDS |
| TGTCGGAGAGAGTGAGGCAG+CGG | 0.506671 | 5.4:+76233678 | None:intergenic |
| AATGGTGATGTTGTCAATAA+CGG | 0.506851 | 5.4:-76233413 | MS.gene48190:CDS |
| TCCATAACAGGATTCATTGT+AGG | 0.509536 | 5.4:-76233104 | MS.gene48190:CDS |
| CTTCTCCATCATCTCTAACT+GGG | 0.510502 | 5.4:+76232850 | None:intergenic |
| AACCCACCAACGACTAGAGC+CGG | 0.516179 | 5.4:+76233373 | None:intergenic |
| GGTCTGGTTTGTTAAGAGTG+TGG | 0.519402 | 5.4:-76232911 | MS.gene48190:CDS |
| CTCGCCTGCGGCTTCGTCGA+CGG | 0.523192 | 5.4:-76233650 | MS.gene48190:CDS |
| GAGTGAGGCAGCGGCAGATG+AGG | 0.527259 | 5.4:+76233687 | None:intergenic |
| GTTCGGATCTACTGTGGCAG+AGG | 0.528047 | 5.4:-76233859 | MS.gene48190:CDS |
| TGGTGGGTTGGTTTATATGT+TGG | 0.528184 | 5.4:-76233359 | MS.gene48190:CDS |
| GACGAAGCCGCAGGCGAGGT+GGG | 0.529764 | 5.4:+76233655 | None:intergenic |
| GGCGCAGAACATATAGATTG+AGG | 0.532902 | 5.4:-76233820 | MS.gene48190:CDS |
| GTGGTCCCACAATATGATCC+AGG | 0.534362 | 5.4:-76233725 | MS.gene48190:CDS |
| ATGTTATAACCTATTCTGGT+GGG | 0.534574 | 5.4:-76232932 | MS.gene48190:CDS |
| GCCGCAGGCGAGGTGGGTGT+CGG | 0.536831 | 5.4:+76233661 | None:intergenic |
| GTGATACACAATCGCGCCGC+AGG | 0.537724 | 5.4:+76232876 | None:intergenic |
| ATGGAGAGAAGTGTCACGTT+CGG | 0.540623 | 5.4:-76233876 | MS.gene48190:CDS |
| GCGCAGAACATATAGATTGA+GGG | 0.543876 | 5.4:-76233819 | MS.gene48190:CDS |
| GATCTCCTGGATCATATTGT+GGG | 0.544786 | 5.4:+76233720 | None:intergenic |
| CGTCGTGCAGGAATGGGCCC+GGG | 0.546050 | 5.4:+76233443 | None:intergenic |
| AATTTGCCGGCTCTAGTCGT+TGG | 0.546832 | 5.4:-76233379 | MS.gene48190:CDS |
| GGTTTATATGTTGGCCACGC+GGG | 0.547159 | 5.4:-76233350 | MS.gene48190:CDS |
| GTGGTGGAAAGAAGTGGTGT+TGG | 0.551066 | 5.4:-76233050 | MS.gene48190:CDS |
| AATGGGCCTGGACCAATACC+CGG | 0.556865 | 5.4:-76233461 | MS.gene48190:CDS |
| GCCGAATAGAAGACCATGGT+TGG | 0.558339 | 5.4:+76233574 | None:intergenic |
| GGCAGTTAGAGTACATCTAC+TGG | 0.561144 | 5.4:-76233790 | MS.gene48190:CDS |
| TCTACTGGCATCGAACGGCC+AGG | 0.565427 | 5.4:-76233775 | MS.gene48190:CDS |
| TTTGTTGTGGTGGAAAGAAG+TGG | 0.565574 | 5.4:-76233056 | MS.gene48190:CDS |
| GAAGTGGTGTTGGAACTGTT+CGG | 0.568741 | 5.4:-76233040 | MS.gene48190:CDS |
| GGTGGGTGTCGGAGAGAGTG+AGG | 0.568818 | 5.4:+76233672 | None:intergenic |
| CGTCGACGAAGCCGCAGGCG+AGG | 0.570217 | 5.4:+76233651 | None:intergenic |
| ATGGGCCTGGACCAATACCC+GGG | 0.577553 | 5.4:-76233460 | MS.gene48190:CDS |
| GTGACTCGGACTCGACCGAC+CGG | 0.586956 | 5.4:+76233215 | None:intergenic |
| ATCCGGAAACGGTTCAAGGA+TGG | 0.588593 | 5.4:-76233262 | MS.gene48190:CDS |
| GACCACTAAAGCATGTCTCC+CGG | 0.592351 | 5.4:+76233742 | None:intergenic |
| TATGTTATAACCTATTCTGG+TGG | 0.596396 | 5.4:-76232933 | MS.gene48190:CDS |
| GCATGCAGGTTTGTTCAACA+TGG | 0.597878 | 5.4:-76233895 | None:intergenic |
| ACTGCCGTCGACGAAGCCGC+AGG | 0.600288 | 5.4:+76233646 | None:intergenic |
| ACGGCCAGGAACTTTACCAC+CGG | 0.601863 | 5.4:-76233761 | MS.gene48190:CDS |
| ATAATTTCGAGCGCGTGAGT+AGG | 0.604680 | 5.4:-76233010 | MS.gene48190:CDS |
| CGGCCAGGAACTTTACCACC+GGG | 0.607000 | 5.4:-76233760 | MS.gene48190:CDS |
| CCAGTTAGAGATGATGGAGA+AGG | 0.611674 | 5.4:-76232849 | MS.gene48190:CDS |
| GATGGAGAAGGACAAGTACA+TGG | 0.613846 | 5.4:-76232837 | MS.gene48190:CDS |
| TCCGACACCCACCTCGCCTG+CGG | 0.615146 | 5.4:-76233662 | MS.gene48190:CDS |
| ATCTCCATCTAATCTCGCGA+AGG | 0.620003 | 5.4:+76233502 | None:intergenic |
| ATCATTGGATGTTAGCCATG+AGG | 0.625954 | 5.4:-76233081 | MS.gene48190:CDS |
| TGCTAACATGTGCACCGGTG+TGG | 0.634853 | 5.4:+76233606 | None:intergenic |
| TGGTTTATATGTTGGCCACG+CGG | 0.637945 | 5.4:-76233351 | MS.gene48190:CDS |
| ACAAGTACATGGCAATAGCA+TGG | 0.638195 | 5.4:-76232826 | MS.gene48190:CDS |
| CATCACGTAATAGAATCTCT+GGG | 0.640810 | 5.4:+76233132 | None:intergenic |
| CATATAGATTGAGGGACACG+TGG | 0.643287 | 5.4:-76233811 | MS.gene48190:CDS |
| CGGTGTGGAGATCGAAGAGT+CGG | 0.650728 | 5.4:+76233621 | None:intergenic |
| CCGGGCCCATTCCTGCACGA+CGG | 0.655323 | 5.4:-76233442 | MS.gene48190:CDS |
| AAATGTGCTAACATGTGCAC+CGG | 0.656474 | 5.4:+76233601 | None:intergenic |
| GTACATCTACTGGCATCGAA+CGG | 0.656579 | 5.4:-76233780 | MS.gene48190:CDS |
| TTTGAAAAGCCCCGCCCGCG+TGG | 0.661088 | 5.4:+76233336 | None:intergenic |
| CGACTCTTCGATCTCCACAC+CGG | 0.677791 | 5.4:-76233620 | MS.gene48190:CDS |
| ACCGAATTAGTTGAACCGGT+CGG | 0.683053 | 5.4:-76233230 | MS.gene48190:CDS |
| TGTCACGTTCGGATCTACTG+TGG | 0.685634 | 5.4:-76233865 | MS.gene48190:CDS |
| GTGGGACATACATGAACCTG+CGG | 0.688958 | 5.4:-76232892 | MS.gene48190:CDS |
| CACTAAAGCATGTCTCCCGG+TGG | 0.706707 | 5.4:+76233745 | None:intergenic |
| GGTTGCTAATCAAACTCACG+TGG | 0.706916 | 5.4:-76232805 | MS.gene48190:CDS |
| ACGGGCCGAATAGAAGACCA+TGG | 0.711737 | 5.4:+76233570 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTACATTGCTATTATTAAT+GGG | - | chr5.4:76233161-76233180 | MS.gene48190:CDS | 20.0% |
| !! | GTCTACATTGCTATTATTAA+TGG | - | chr5.4:76233160-76233179 | MS.gene48190:CDS | 25.0% |
| AGCTACTACAAATTCTCTTT+CGG | + | chr5.4:76233449-76233468 | None:intergenic | 30.0% | |
| ATGTTATAACCTATTCTGGT+GGG | - | chr5.4:76233707-76233726 | MS.gene48190:CDS | 30.0% | |
| CATGGTTAAGAGGTTTATTA+GGG | - | chr5.4:76233668-76233687 | MS.gene48190:CDS | 30.0% | |
| TATGTTATAACCTATTCTGG+TGG | - | chr5.4:76233706-76233725 | MS.gene48190:CDS | 30.0% | |
| TATTAGGGTGCATGAATTTA+GGG | - | chr5.4:76233683-76233702 | MS.gene48190:CDS | 30.0% | |
| TCATGGTTAAGAGGTTTATT+AGG | - | chr5.4:76233667-76233686 | MS.gene48190:CDS | 30.0% | |
| TGACACTTCTATACGTTTAT+TGG | - | chr5.4:76233870-76233889 | MS.gene48190:CDS | 30.0% | |
| TTATTAGGGTGCATGAATTT+AGG | - | chr5.4:76233682-76233701 | MS.gene48190:CDS | 30.0% | |
| ! | AATGGTGATGTTGTCAATAA+CGG | - | chr5.4:76233226-76233245 | MS.gene48190:CDS | 30.0% |
| ACATCACGTAATAGAATCTC+TGG | + | chr5.4:76233511-76233530 | None:intergenic | 35.0% | |
| AGGATTCATTGTAGGATCAT+TGG | - | chr5.4:76233543-76233562 | MS.gene48190:CDS | 35.0% | |
| CATCACGTAATAGAATCTCT+GGG | + | chr5.4:76233510-76233529 | None:intergenic | 35.0% | |
| CGTGAGTAGGTTTAGATTAA+GGG | - | chr5.4:76233642-76233661 | MS.gene48190:CDS | 35.0% | |
| GGGTATGTTATAACCTATTC+TGG | - | chr5.4:76233703-76233722 | MS.gene48190:CDS | 35.0% | |
| GTTAACCGAATTAGTTGAAC+CGG | - | chr5.4:76233405-76233424 | MS.gene48190:CDS | 35.0% | |
| TCCAATTACAATTCCCGAAA+CGG | + | chr5.4:76233104-76233123 | None:intergenic | 35.0% | |
| TCCATAACAGGATTCATTGT+AGG | - | chr5.4:76233535-76233554 | MS.gene48190:CDS | 35.0% | |
| TCCTACAATGAATCCTGTTA+TGG | + | chr5.4:76233539-76233558 | None:intergenic | 35.0% | |
| ! | ATTGCTATTATTAATGGGCC+TGG | - | chr5.4:76233166-76233185 | MS.gene48190:CDS | 35.0% |
| ! | GGAGTATTAGTAGAATTTGC+CGG | - | chr5.4:76233247-76233266 | MS.gene48190:CDS | 35.0% |
| AAATGTGCTAACATGTGCAC+CGG | + | chr5.4:76233041-76233060 | None:intergenic | 40.0% | |
| ACAAGTACATGGCAATAGCA+TGG | - | chr5.4:76233813-76233832 | MS.gene48190:CDS | 40.0% | |
| AGCTTGCACAAGTACAAGAT+TGG | - | chr5.4:76233465-76233484 | MS.gene48190:CDS | 40.0% | |
| ATCATTGGATGTTAGCCATG+AGG | - | chr5.4:76233558-76233577 | MS.gene48190:CDS | 40.0% | |
| CAAATTCTCTTTCGGTGACT+CGG | + | chr5.4:76233441-76233460 | None:intergenic | 40.0% | |
| CTTCTCCATCATCTCTAACT+GGG | + | chr5.4:76233792-76233811 | None:intergenic | 40.0% | |
| GATCTCCTGGATCATATTGT+GGG | + | chr5.4:76232922-76232941 | None:intergenic | 40.0% | |
| GCGCAGAACATATAGATTGA+GGG | - | chr5.4:76232820-76232839 | MS.gene48190:CDS | 40.0% | |
| GCGTGAGTAGGTTTAGATTA+AGG | - | chr5.4:76233641-76233660 | MS.gene48190:CDS | 40.0% | |
| GGTTTAGATTAAGGGCTTCA+TGG | - | chr5.4:76233650-76233669 | MS.gene48190:CDS | 40.0% | |
| TCCAACCATGGTCTTCTATT+CGG | - | chr5.4:76233064-76233083 | MS.gene48190:CDS | 40.0% | |
| TCCGTTTCGGGAATTGTAAT+TGG | - | chr5.4:76233100-76233119 | MS.gene48190:CDS | 40.0% | |
| TGATCTCCTGGATCATATTG+TGG | + | chr5.4:76232923-76232942 | None:intergenic | 40.0% | |
| TTAAGGGCTTCATGGTTAAG+AGG | - | chr5.4:76233658-76233677 | MS.gene48190:CDS | 40.0% | |
| TTCATTAACCGATCCGGAAA+CGG | - | chr5.4:76233366-76233385 | MS.gene48190:CDS | 40.0% | |
| ! | GTGCACATGTTAGCACATTT+TGG | - | chr5.4:76233041-76233060 | MS.gene48190:CDS | 40.0% |
| ! | TAGCCATGAGGTTTTTGTTG+TGG | - | chr5.4:76233570-76233589 | MS.gene48190:CDS | 40.0% |
| ! | TTTGTTGTGGTGGAAAGAAG+TGG | - | chr5.4:76233583-76233602 | MS.gene48190:CDS | 40.0% |
| !! | GTCTGGTTTGTTAAGAGTGT+GGG | - | chr5.4:76233729-76233748 | MS.gene48190:CDS | 40.0% |
| !! | TGGTGGGTTGGTTTATATGT+TGG | - | chr5.4:76233280-76233299 | MS.gene48190:CDS | 40.0% |
| ACCGAATTAGTTGAACCGGT+CGG | - | chr5.4:76233409-76233428 | MS.gene48190:CDS | 45.0% | |
| ATAATTTCGAGCGCGTGAGT+AGG | - | chr5.4:76233629-76233648 | MS.gene48190:CDS | 45.0% | |
| ATCTCCATCTAATCTCGCGA+AGG | + | chr5.4:76233140-76233159 | None:intergenic | 45.0% | |
| CATATAGATTGAGGGACACG+TGG | - | chr5.4:76232828-76232847 | MS.gene48190:CDS | 45.0% | |
| CCACCACAACAAAAACCTCA+TGG | + | chr5.4:76233576-76233595 | None:intergenic | 45.0% | |
| CCTTCTCCATCATCTCTAAC+TGG | + | chr5.4:76233793-76233812 | None:intergenic | 45.0% | |
| CGTGATGTAGTGTCCATAAC+AGG | - | chr5.4:76233523-76233542 | MS.gene48190:CDS | 45.0% | |
| GATGGAGAAGGACAAGTACA+TGG | - | chr5.4:76233802-76233821 | MS.gene48190:CDS | 45.0% | |
| GGCAGTTAGAGTACATCTAC+TGG | - | chr5.4:76232849-76232868 | MS.gene48190:CDS | 45.0% | |
| GGCGCAGAACATATAGATTG+AGG | - | chr5.4:76232819-76232838 | MS.gene48190:CDS | 45.0% | |
| GGTTGCTAATCAAACTCACG+TGG | - | chr5.4:76233834-76233853 | MS.gene48190:CDS | 45.0% | |
| TGGTTTATATGTTGGCCACG+CGG | - | chr5.4:76233288-76233307 | MS.gene48190:CDS | 45.0% | |
| ! | ACCGACCGGTTCAACTAATT+CGG | + | chr5.4:76233413-76233432 | None:intergenic | 45.0% |
| ! | ATAACCTATTCTGGTGGGTC+TGG | - | chr5.4:76233712-76233731 | MS.gene48190:CDS | 45.0% |
| ! | CCCGTTTTCACAATCCGTTT+CGG | - | chr5.4:76233087-76233106 | MS.gene48190:CDS | 45.0% |
| ! | CCGTTTTCACAATCCGTTTC+GGG | - | chr5.4:76233088-76233107 | MS.gene48190:CDS | 45.0% |
| ! | GAAGTGGTGTTGGAACTGTT+CGG | - | chr5.4:76233599-76233618 | MS.gene48190:CDS | 45.0% |
| ! | GTACATCTACTGGCATCGAA+CGG | - | chr5.4:76232859-76232878 | MS.gene48190:CDS | 45.0% |
| !! | AGCACATTTTGGTCCAACCA+TGG | - | chr5.4:76233052-76233071 | MS.gene48190:CDS | 45.0% |
| !! | ATGGAGAGAAGTGTCACGTT+CGG | - | chr5.4:76232763-76232782 | MS.gene48190:CDS | 45.0% |
| !! | CCAGTTAGAGATGATGGAGA+AGG | - | chr5.4:76233790-76233809 | MS.gene48190:CDS | 45.0% |
| !! | CCATGAGGTTTTTGTTGTGG+TGG | - | chr5.4:76233573-76233592 | MS.gene48190:CDS | 45.0% |
| !! | CCCGAAACGGATTGTGAAAA+CGG | + | chr5.4:76233091-76233110 | None:intergenic | 45.0% |
| !! | CCGAAACGGATTGTGAAAAC+GGG | + | chr5.4:76233090-76233109 | None:intergenic | 45.0% |
| !! | GGTCTGGTTTGTTAAGAGTG+TGG | - | chr5.4:76233728-76233747 | MS.gene48190:CDS | 45.0% |
| ACGCTCCCAGTTAGAGATGA+TGG | - | chr5.4:76233784-76233803 | MS.gene48190:CDS | 50.0% | |
| ATCCGGAAACGGTTCAAGGA+TGG | - | chr5.4:76233377-76233396 | MS.gene48190:CDS | 50.0% | |
| ATCTAATCTCGCGAAGGCGA+GGG | + | chr5.4:76233134-76233153 | None:intergenic | 50.0% | |
| CAAACCAGACCCACCAGAAT+AGG | + | chr5.4:76233719-76233738 | None:intergenic | 50.0% | |
| GACCACTAAAGCATGTCTCC+CGG | + | chr5.4:76232900-76232919 | None:intergenic | 50.0% | |
| GCCGAATAGAAGACCATGGT+TGG | + | chr5.4:76233068-76233087 | None:intergenic | 50.0% | |
| GGTTTATATGTTGGCCACGC+GGG | - | chr5.4:76233289-76233308 | MS.gene48190:CDS | 50.0% | |
| GTGGGACATACATGAACCTG+CGG | - | chr5.4:76233747-76233766 | MS.gene48190:CDS | 50.0% | |
| GTGGTCCCACAATATGATCC+AGG | - | chr5.4:76232914-76232933 | MS.gene48190:CDS | 50.0% | |
| TCAAATATGGGACGCGCACA+CGG | - | chr5.4:76233321-76233340 | MS.gene48190:CDS | 50.0% | |
| TCCTTGAACCGTTTCCGGAT+CGG | + | chr5.4:76233377-76233396 | None:intergenic | 50.0% | |
| TGCCATCCTTGAACCGTTTC+CGG | + | chr5.4:76233382-76233401 | None:intergenic | 50.0% | |
| TGGCGGTTCATTAACCGATC+CGG | - | chr5.4:76233360-76233379 | MS.gene48190:CDS | 50.0% | |
| TGTCACGTTCGGATCTACTG+TGG | - | chr5.4:76232774-76232793 | MS.gene48190:CDS | 50.0% | |
| ! | GGGCGGGGCTTTTCAAATAT+GGG | - | chr5.4:76233309-76233328 | MS.gene48190:CDS | 50.0% |
| ! | GTGGTGGAAAGAAGTGGTGT+TGG | - | chr5.4:76233589-76233608 | MS.gene48190:CDS | 50.0% |
| !! | AATTTGCCGGCTCTAGTCGT+TGG | - | chr5.4:76233260-76233279 | MS.gene48190:CDS | 50.0% |
| !!! | AGGTTTTGGTGGTGATCTCC+TGG | + | chr5.4:76232935-76232954 | None:intergenic | 50.0% |
| AACCCACCAACGACTAGAGC+CGG | + | chr5.4:76233269-76233288 | None:intergenic | 55.0% | |
| AATGGGCCTGGACCAATACC+CGG | - | chr5.4:76233178-76233197 | MS.gene48190:CDS | 55.0% | |
| AATTGCCCGTCGTGCAGGAA+TGG | + | chr5.4:76233206-76233225 | None:intergenic | 55.0% | |
| ACCGATCCGGAAACGGTTCA+AGG | - | chr5.4:76233373-76233392 | MS.gene48190:CDS | 55.0% | |
| ACGGAACAGCGCGTGTTTGT+TGG | - | chr5.4:76233340-76233359 | MS.gene48190:CDS | 55.0% | |
| ACGGCCAGGAACTTTACCAC+CGG | - | chr5.4:76232878-76232897 | MS.gene48190:CDS | 55.0% | |
| ACGGGCCGAATAGAAGACCA+TGG | + | chr5.4:76233072-76233091 | None:intergenic | 55.0% | |
| ATTGCCCGTCGTGCAGGAAT+GGG | + | chr5.4:76233205-76233224 | None:intergenic | 55.0% | |
| CACCGGGAGACATGCTTTAG+TGG | - | chr5.4:76232895-76232914 | MS.gene48190:CDS | 55.0% | |
| CACTAAAGCATGTCTCCCGG+TGG | + | chr5.4:76232897-76232916 | None:intergenic | 55.0% | |
| CATCTAATCTCGCGAAGGCG+AGG | + | chr5.4:76233135-76233154 | None:intergenic | 55.0% | |
| CCATTAATTGCCCGTCGTGC+AGG | + | chr5.4:76233211-76233230 | None:intergenic | 55.0% | |
| CCTGCACGACGGGCAATTAA+TGG | - | chr5.4:76233208-76233227 | MS.gene48190:CDS | 55.0% | |
| CGACTCTTCGATCTCCACAC+CGG | - | chr5.4:76233019-76233038 | MS.gene48190:CDS | 55.0% | |
| CGGTGTGGAGATCGAAGAGT+CGG | + | chr5.4:76233021-76233040 | None:intergenic | 55.0% | |
| CTCGCCTTCGCGAGATTAGA+TGG | - | chr5.4:76233133-76233152 | MS.gene48190:CDS | 55.0% | |
| GTTCGGATCTACTGTGGCAG+AGG | - | chr5.4:76232780-76232799 | MS.gene48190:CDS | 55.0% | |
| TCTCCCGGTGGTAAAGTTCC+TGG | + | chr5.4:76232885-76232904 | None:intergenic | 55.0% | |
| TTATATGTTGGCCACGCGGG+CGG | - | chr5.4:76233292-76233311 | MS.gene48190:CDS | 55.0% | |
| ! | CGGGCGGGGCTTTTCAAATA+TGG | - | chr5.4:76233308-76233327 | MS.gene48190:CDS | 55.0% |
| ! | GAACAGCGCGTGTTTGTTGG+CGG | - | chr5.4:76233343-76233362 | MS.gene48190:CDS | 55.0% |
| ! | TGCTAACATGTGCACCGGTG+TGG | + | chr5.4:76233036-76233055 | None:intergenic | 55.0% |
| !! | AGCGGCAGATGAGGTTTTGG+TGG | + | chr5.4:76232946-76232965 | None:intergenic | 55.0% |
| AGAGGCTCACGAGACGCATC+TGG | - | chr5.4:76232798-76232817 | MS.gene48190:CDS | 60.0% | |
| ATGGGCCTGGACCAATACCC+GGG | - | chr5.4:76233179-76233198 | MS.gene48190:CDS | 60.0% | |
| CGGCCAGGAACTTTACCACC+GGG | - | chr5.4:76232879-76232898 | MS.gene48190:CDS | 60.0% | |
| GTGATACACAATCGCGCCGC+AGG | + | chr5.4:76233766-76233785 | None:intergenic | 60.0% | |
| TATATGTTGGCCACGCGGGC+GGG | - | chr5.4:76233293-76233312 | MS.gene48190:CDS | 60.0% | |
| TGTCGGAGAGAGTGAGGCAG+CGG | + | chr5.4:76232964-76232983 | None:intergenic | 60.0% | |
| ! | GGCAGCGGCAGATGAGGTTT+TGG | + | chr5.4:76232949-76232968 | None:intergenic | 60.0% |
| ! | GGCTCTAGTCGTTGGTGGGT+TGG | - | chr5.4:76233268-76233287 | MS.gene48190:CDS | 60.0% |
| ! | TCTACTGGCATCGAACGGCC+AGG | - | chr5.4:76232864-76232883 | MS.gene48190:CDS | 60.0% |
| !! | TGCCGGCTCTAGTCGTTGGT+GGG | - | chr5.4:76233264-76233283 | MS.gene48190:CDS | 60.0% |
| !! | TTGCCGGCTCTAGTCGTTGG+TGG | - | chr5.4:76233263-76233282 | MS.gene48190:CDS | 60.0% |
| ATATGTTGGCCACGCGGGCG+GGG | - | chr5.4:76233294-76233313 | MS.gene48190:CDS | 65.0% | |
| GAGTGAGGCAGCGGCAGATG+AGG | + | chr5.4:76232955-76232974 | None:intergenic | 65.0% | |
| GCAGGAATGGGCCCGGGTAT+TGG | + | chr5.4:76233193-76233212 | None:intergenic | 65.0% | |
| TTTGAAAAGCCCCGCCCGCG+TGG | + | chr5.4:76233306-76233325 | None:intergenic | 65.0% | |
| ! | GTGACTCGGACTCGACCGAC+CGG | + | chr5.4:76233427-76233446 | None:intergenic | 65.0% |
| !! | ATGGGCCCGGGTATTGGTCC+AGG | + | chr5.4:76233187-76233206 | None:intergenic | 65.0% |
| !! | GGTGGGTGTCGGAGAGAGTG+AGG | + | chr5.4:76232970-76232989 | None:intergenic | 65.0% |
| ACTGCCGTCGACGAAGCCGC+AGG | + | chr5.4:76232996-76233015 | None:intergenic | 70.0% | |
| CCGGGCCCATTCCTGCACGA+CGG | - | chr5.4:76233197-76233216 | MS.gene48190:CDS | 70.0% | |
| CCGTCGTGCAGGAATGGGCC+CGG | + | chr5.4:76233200-76233219 | None:intergenic | 70.0% | |
| CGGGCCCATTCCTGCACGAC+GGG | - | chr5.4:76233198-76233217 | MS.gene48190:CDS | 70.0% | |
| CGTCGTGCAGGAATGGGCCC+GGG | + | chr5.4:76233199-76233218 | None:intergenic | 70.0% | |
| CTCGCCTGCGGCTTCGTCGA+CGG | - | chr5.4:76232989-76233008 | MS.gene48190:CDS | 70.0% | |
| GACGAAGCCGCAGGCGAGGT+GGG | + | chr5.4:76232987-76233006 | None:intergenic | 70.0% | |
| TCCGACACCCACCTCGCCTG+CGG | - | chr5.4:76232977-76232996 | MS.gene48190:CDS | 70.0% | |
| CGACGAAGCCGCAGGCGAGG+TGG | + | chr5.4:76232988-76233007 | None:intergenic | 75.0% | |
| CGTCGACGAAGCCGCAGGCG+AGG | + | chr5.4:76232991-76233010 | None:intergenic | 75.0% | |
| GCCGCAGGCGAGGTGGGTGT+CGG | + | chr5.4:76232981-76233000 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 76232752 | 76233909 | 76232752 | ID=MS.gene48190 |
| chr5.4 | mRNA | 76232752 | 76233909 | 76232752 | ID=MS.gene48190.t1;Parent=MS.gene48190 |
| chr5.4 | exon | 76232752 | 76233909 | 76232752 | ID=MS.gene48190.t1.exon1;Parent=MS.gene48190.t1 |
| chr5.4 | CDS | 76232752 | 76233909 | 76232752 | ID=cds.MS.gene48190.t1;Parent=MS.gene48190.t1 |
| Gene Sequence |
| Protein sequence |
