Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48286.t1 | XP_003608901.2 | 94.6 | 221 | 12 | 0 | 1 | 221 | 33 | 253 | 4.70E-116 | 427.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48286.t1 | G7JMN8 | 94.6 | 221 | 12 | 0 | 1 | 221 | 33 | 253 | 3.4e-116 | 427.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene48286.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48286.t1 | MTR_4g104230 | 94.570 | 221 | 12 | 0 | 1 | 221 | 33 | 253 | 2.06e-155 | 432 |
| MS.gene48286.t1 | MTR_4g104230 | 94.144 | 222 | 12 | 1 | 1 | 221 | 33 | 254 | 1.47e-153 | 427 |
| MS.gene48286.t1 | MTR_3g052770 | 62.385 | 218 | 82 | 0 | 4 | 221 | 32 | 249 | 1.23e-107 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48286.t1 | AT5G63280 | 62.319 | 207 | 76 | 1 | 2 | 206 | 27 | 233 | 7.13e-98 | 286 |
| MS.gene48286.t1 | AT5G40710 | 59.906 | 212 | 84 | 1 | 10 | 221 | 39 | 249 | 1.71e-94 | 277 |
| MS.gene48286.t1 | AT5G40710 | 65.409 | 159 | 55 | 0 | 11 | 169 | 40 | 198 | 5.04e-77 | 232 |
Find 46 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGATGGACCCTCACTTAT+AGG | 0.232839 | 8.1:-20342363 | None:intergenic |
| TGTGATGCTCACTCCTGTTC+AGG | 0.266539 | 8.1:+20342564 | MS.gene48286:CDS |
| ACACTTGCTTCTAGAGGATT+TGG | 0.284180 | 8.1:-20342198 | None:intergenic |
| CCCTGAGAATGATATGTTTA+GGG | 0.285937 | 8.1:+20341143 | MS.gene48286:CDS |
| CGGTTTCTTGCAGCAGCTGC+TGG | 0.299401 | 8.1:-20342224 | None:intergenic |
| CAGGTTTATGAGGAATCTTC+TGG | 0.305367 | 8.1:+20340364 | None:intergenic |
| ACCCTGAGAATGATATGTTT+AGG | 0.338391 | 8.1:+20341142 | MS.gene48286:CDS |
| TCTCTAGAGCAATGCACTTC+AGG | 0.339242 | 8.1:-20340783 | None:intergenic |
| AGGAGTGAGCATCACAAAAT+TGG | 0.344243 | 8.1:-20342557 | None:intergenic |
| GGGTTTGTGTTTCCCTGAAC+AGG | 0.363706 | 8.1:-20342577 | None:intergenic |
| TCTTTATTTATTTGATGAAA+AGG | 0.392404 | 8.1:+20343130 | MS.gene48286:CDS |
| TCCCTAAACATATCATTCTC+AGG | 0.425069 | 8.1:-20341144 | None:intergenic |
| AAATGCTTCGCTGATTTATG+TGG | 0.425702 | 8.1:+20342146 | MS.gene48286:CDS |
| TTATAGTAGGAATCTTAAAC+AGG | 0.430837 | 8.1:+20340746 | MS.gene48286:intron |
| CCATCAGCAAGCCGTCTTCA+TGG | 0.441147 | 8.1:+20342378 | MS.gene48286:CDS |
| AGATCAATGCTCCGGCGGCC+AGG | 0.444945 | 8.1:-20343083 | None:intergenic |
| GTGATGCTCACTCCTGTTCA+GGG | 0.446768 | 8.1:+20342565 | MS.gene48286:CDS |
| TCAAGGAAGTTTCTTTCGCC+TGG | 0.471327 | 8.1:+20343065 | MS.gene48286:CDS |
| ATTGCTCTAGAGAGAGAAGC+AGG | 0.482407 | 8.1:+20340793 | MS.gene48286:CDS |
| AGTTTCTTTCGCCTGGCCGC+CGG | 0.484275 | 8.1:+20343072 | MS.gene48286:CDS |
| AATGTTGCTTCAGGTTTATG+AGG | 0.495852 | 8.1:+20340354 | None:intergenic |
| TACCTTGCCTACTCTAGAGA+AGG | 0.525402 | 8.1:-20342598 | None:intergenic |
| GTAGTATTTGACACCATTTG+TGG | 0.525738 | 8.1:+20341080 | MS.gene48286:intron |
| GGTTGCTTCGAAAGTGATAG+AGG | 0.525753 | 8.1:+20340815 | MS.gene48286:CDS |
| CCATGAAGACGGCTTGCTGA+TGG | 0.527181 | 8.1:-20342378 | None:intergenic |
| AATGCTTCGCTGATTTATGT+GGG | 0.533259 | 8.1:+20342147 | MS.gene48286:CDS |
| TGGATTACACTTGCTTCTAG+AGG | 0.538171 | 8.1:-20342204 | None:intergenic |
| ATGAGGAATCTTCTGGTGAA+AGG | 0.539956 | 8.1:+20340371 | MS.gene48286:CDS |
| TTTATCTAGACAGAAATGAA+TGG | 0.558782 | 8.1:+20341184 | MS.gene48286:CDS |
| TTTAATTGTGATCAGGGTCA+AGG | 0.560002 | 8.1:+20343048 | MS.gene48286:intron |
| TAGCACTAAGATCAATGCTC+CGG | 0.569538 | 8.1:-20343091 | None:intergenic |
| CCCTAAACATATCATTCTCA+GGG | 0.574589 | 8.1:-20341143 | None:intergenic |
| ACCCTTCTCTAGAGTAGGCA+AGG | 0.578969 | 8.1:+20342596 | MS.gene48286:CDS |
| ACCTTGCCTACTCTAGAGAA+GGG | 0.589412 | 8.1:-20342597 | None:intergenic |
| AAATTAAAGCAACCTCACAT+AGG | 0.622173 | 8.1:-20342250 | None:intergenic |
| TTAATTTGAATACAGAGTCA+CGG | 0.624981 | 8.1:+20342122 | MS.gene48286:intron |
| AAGCAACCTCACATAGGTGA+CGG | 0.626590 | 8.1:-20342244 | None:intergenic |
| CACAAACCCTTCTCTAGAGT+AGG | 0.639033 | 8.1:+20342591 | MS.gene48286:CDS |
| ATATAAGTATACCATGAAGA+CGG | 0.640466 | 8.1:-20342389 | None:intergenic |
| ATGCTTCGCTGATTTATGTG+GGG | 0.654468 | 8.1:+20342148 | MS.gene48286:CDS |
| CACTAAGATCAATGCTCCGG+CGG | 0.665181 | 8.1:-20343088 | None:intergenic |
| GACAGAAATGAATGGCGATG+TGG | 0.677495 | 8.1:+20341192 | MS.gene48286:CDS |
| TAAATAAAGAGATAGAACAC+AGG | 0.680639 | 8.1:-20343117 | None:intergenic |
| TTGCTCTAGAGAGAGAAGCA+GGG | 0.684514 | 8.1:+20340794 | MS.gene48286:CDS |
| TGCTTCGAAAGTGATAGAGG+AGG | 0.706489 | 8.1:+20340818 | MS.gene48286:CDS |
| AAGAAACCGTCACCTATGTG+AGG | 0.712031 | 8.1:+20342238 | MS.gene48286:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAGTAATTTTAACATT+GGG | + | chr8.1:20341973-20341992 | MS.gene48286:intron | 10.0% |
| !!! | TATACTTATATTTTCTTTTT+CGG | + | chr8.1:20342401-20342420 | MS.gene48286:intron | 10.0% |
| !! | AACATTTAGATGTAATAATT+AGG | + | chr8.1:20340976-20340995 | MS.gene48286:intron | 15.0% |
| !! | AATACTACAAAAACATATAT+AGG | - | chr8.1:20341068-20341087 | None:intergenic | 15.0% |
| !! | ATAATGAAAACAAATTTAAC+CGG | - | chr8.1:20342640-20342659 | None:intergenic | 15.0% |
| !! | ATTTGTTTCAAAAAAAGTAA+AGG | - | chr8.1:20342870-20342889 | None:intergenic | 15.0% |
| !! | TATTTATTTAATTGTGATCA+GGG | + | chr8.1:20343042-20343061 | MS.gene48286:intron | 15.0% |
| !! | TTGCAGAAATAAAAATTAAT+AGG | - | chr8.1:20341425-20341444 | None:intergenic | 15.0% |
| !!! | CATTTTAATTTCTAAATGTT+TGG | + | chr8.1:20340420-20340439 | MS.gene48286:intron | 15.0% |
| !!! | CATTTTAGTAATTTTAACAT+TGG | + | chr8.1:20341972-20341991 | MS.gene48286:intron | 15.0% |
| !!! | TCTTTATTTATTTGATGAAA+AGG | + | chr8.1:20343130-20343149 | MS.gene48286:CDS | 15.0% |
| !! | AAAATTATTGCGATTGAAAA+AGG | - | chr8.1:20340854-20340873 | None:intergenic | 20.0% |
| !! | ATAAAGAATGCATATAGATT+AGG | - | chr8.1:20342315-20342334 | None:intergenic | 20.0% |
| !! | CTATTTATTTAATTGTGATC+AGG | + | chr8.1:20343041-20343060 | MS.gene48286:intron | 20.0% |
| !! | CTGATCACAATTAAATAAAT+AGG | - | chr8.1:20343043-20343062 | None:intergenic | 20.0% |
| !! | TTAATATTTACTACATTCCT+AGG | - | chr8.1:20341709-20341728 | None:intergenic | 20.0% |
| !!! | AGGAAGCTTTTATAATTTTT+AGG | + | chr8.1:20342907-20342926 | MS.gene48286:intron | 20.0% |
| !!! | TTTCAATCGCAATAATTTTA+TGG | + | chr8.1:20340855-20340874 | MS.gene48286:intron | 20.0% |
| ! | AAAAATCATTCCCAAGAATA+TGG | + | chr8.1:20341493-20341512 | MS.gene48286:intron | 25.0% |
| ! | AAATGCAATTCTATACTCTT+AGG | + | chr8.1:20341449-20341468 | MS.gene48286:intron | 25.0% |
| ! | AATATGGAAGTTACAAAGAA+GGG | + | chr8.1:20341509-20341528 | MS.gene48286:intron | 25.0% |
| ! | AATGCAATTCTATACTCTTA+GGG | + | chr8.1:20341450-20341469 | MS.gene48286:intron | 25.0% |
| ! | ATATAAGTATACCATGAAGA+CGG | - | chr8.1:20342392-20342411 | None:intergenic | 25.0% |
| ! | CTAGGATTATTTGTAAACAT+GGG | - | chr8.1:20341691-20341710 | None:intergenic | 25.0% |
| ! | TAAATAAAGAGATAGAACAC+AGG | - | chr8.1:20343120-20343139 | None:intergenic | 25.0% |
| ! | TAGGATTATTTGTAAACATG+GGG | - | chr8.1:20341690-20341709 | None:intergenic | 25.0% |
| ! | TTATAGTAGGAATCTTAAAC+AGG | + | chr8.1:20340746-20340765 | MS.gene48286:intron | 25.0% |
| ! | TTTACAAAGTCACTTATAAC+TGG | - | chr8.1:20340516-20340535 | None:intergenic | 25.0% |
| ! | TTTATCTAGACAGAAATGAA+TGG | + | chr8.1:20341184-20341203 | MS.gene48286:CDS | 25.0% |
| ! | TTTCTTGGGAATAAAAACAT+GGG | - | chr8.1:20341595-20341614 | None:intergenic | 25.0% |
| ! | TTTGTAACTTCCATATTCTT+GGG | - | chr8.1:20341506-20341525 | None:intergenic | 25.0% |
| !! | ATTGATTAGTTCAGTAATAC+AGG | + | chr8.1:20342680-20342699 | MS.gene48286:intron | 25.0% |
| !! | CTCTTATCTTATGTTTCTTT+TGG | + | chr8.1:20341327-20341346 | MS.gene48286:intron | 25.0% |
| !! | GATCAAGAAATTTTTCTTCA+CGG | - | chr8.1:20341236-20341255 | None:intergenic | 25.0% |
| !! | GTTTTTATTCCCAAGAAAAT+GGG | + | chr8.1:20341597-20341616 | MS.gene48286:intron | 25.0% |
| !! | TAAGAGTATAGAATTGCATT+TGG | - | chr8.1:20341450-20341469 | None:intergenic | 25.0% |
| !! | TAGTTTTCTTTTTCCACAAA+TGG | - | chr8.1:20341096-20341115 | None:intergenic | 25.0% |
| !! | TTAATTTGAATACAGAGTCA+CGG | + | chr8.1:20342122-20342141 | MS.gene48286:intron | 25.0% |
| !! | TTGATTAGTTCAGTAATACA+GGG | + | chr8.1:20342681-20342700 | MS.gene48286:intron | 25.0% |
| !! | TTTTCTTGGGAATAAAAACA+TGG | - | chr8.1:20341596-20341615 | None:intergenic | 25.0% |
| !!! | ATAAAAAAGAGTGCTATGTA+AGG | - | chr8.1:20340730-20340749 | None:intergenic | 25.0% |
| !!! | ATAGCACTCTTTTTTATAGT+AGG | + | chr8.1:20340733-20340752 | MS.gene48286:intron | 25.0% |
| !!! | GTTTTCAAGTGACAAAAAAA+AGG | + | chr8.1:20340442-20340461 | MS.gene48286:intron | 25.0% |
| !!! | TGTTTTTATTCCCAAGAAAA+TGG | + | chr8.1:20341596-20341615 | MS.gene48286:intron | 25.0% |
| !!! | TTACTTGAATGGTTGATTTT+TGG | + | chr8.1:20342796-20342815 | MS.gene48286:intron | 25.0% |
| !!! | TTGATCAACATTTTGATAAC+AGG | + | chr8.1:20341250-20341269 | MS.gene48286:CDS | 25.0% |
| AAAGTAAACTTATGAGAGAG+CGG | - | chr8.1:20341833-20341852 | None:intergenic | 30.0% | |
| AAATTAAAGCAACCTCACAT+AGG | - | chr8.1:20342253-20342272 | None:intergenic | 30.0% | |
| AGAAAACAGTAATACCTGTA+AGG | - | chr8.1:20341381-20341400 | None:intergenic | 30.0% | |
| ATAAAATATTCCCATGAAGG+TGG | + | chr8.1:20341625-20341644 | MS.gene48286:intron | 30.0% | |
| ATGCAATTCTATACTCTTAG+GGG | + | chr8.1:20341451-20341470 | MS.gene48286:intron | 30.0% | |
| ATGGGAAGTTATTTAATTCC+TGG | - | chr8.1:20341570-20341589 | None:intergenic | 30.0% | |
| CCATGTTTACAAATAATCCT+AGG | + | chr8.1:20341689-20341708 | MS.gene48286:intron | 30.0% | |
| CCATTCAAGTAATGTCAATA+CGG | - | chr8.1:20342788-20342807 | None:intergenic | 30.0% | |
| CCTAGGATTATTTGTAAACA+TGG | - | chr8.1:20341692-20341711 | None:intergenic | 30.0% | |
| CTTTGTAACTTCCATATTCT+TGG | - | chr8.1:20341507-20341526 | None:intergenic | 30.0% | |
| GAATATGGAAGTTACAAAGA+AGG | + | chr8.1:20341508-20341527 | MS.gene48286:intron | 30.0% | |
| GGAATAAAAACATGGGAAAT+GGG | - | chr8.1:20341588-20341607 | None:intergenic | 30.0% | |
| GGAATAAAATATTCCCATGA+AGG | + | chr8.1:20341622-20341641 | MS.gene48286:intron | 30.0% | |
| TAAAAGCTTCCTGATAGAAA+AGG | - | chr8.1:20342899-20342918 | None:intergenic | 30.0% | |
| TAAAATATTCCCATGAAGGT+GGG | + | chr8.1:20341626-20341645 | MS.gene48286:intron | 30.0% | |
| TAAACTCAAAACAGACTTGT+TGG | + | chr8.1:20342007-20342026 | MS.gene48286:intron | 30.0% | |
| TAATACCTGTAAGGTAATAC+TGG | - | chr8.1:20341372-20341391 | None:intergenic | 30.0% | |
| TAATCATGTGAACAAGCTAA+GGG | - | chr8.1:20340698-20340717 | None:intergenic | 30.0% | |
| TGGGAAGTTATTTAATTCCT+GGG | - | chr8.1:20341569-20341588 | None:intergenic | 30.0% | |
| TTAATCATGTGAACAAGCTA+AGG | - | chr8.1:20340699-20340718 | None:intergenic | 30.0% | |
| TTTGTAAACATGGGGAATAT+AGG | - | chr8.1:20341682-20341701 | None:intergenic | 30.0% | |
| ! | AATGTCTTTCCTTTTCTATC+AGG | + | chr8.1:20342887-20342906 | MS.gene48286:intron | 30.0% |
| ! | GCAATAATTTTATGGCATTG+AGG | + | chr8.1:20340863-20340882 | MS.gene48286:intron | 30.0% |
| ! | TTCTTATGTTGATTGTGCAT+TGG | + | chr8.1:20342518-20342537 | MS.gene48286:intron | 30.0% |
| !! | AATTTTATGGCATTGAGGTA+TGG | + | chr8.1:20340868-20340887 | MS.gene48286:intron | 30.0% |
| !! | AGCATTGCACTTTTTATAAG+AGG | - | chr8.1:20341893-20341912 | None:intergenic | 30.0% |
| !! | AGTAATTTTAACATTGGGTG+TGG | + | chr8.1:20341978-20341997 | MS.gene48286:intron | 30.0% |
| !! | AGTTGTTTTCCTATAAGTGA+GGG | + | chr8.1:20342354-20342373 | MS.gene48286:CDS | 30.0% |
| AAAATATTCCCATGAAGGTG+GGG | + | chr8.1:20341627-20341646 | MS.gene48286:intron | 35.0% | |
| AAGCTAGGATATTAATTCCC+AGG | + | chr8.1:20341549-20341568 | MS.gene48286:intron | 35.0% | |
| AATCTTCTGGTGAAAGGTAA+TGG | + | chr8.1:20340377-20340396 | MS.gene48286:intron | 35.0% | |
| ACCCTGAGAATGATATGTTT+AGG | + | chr8.1:20341142-20341161 | MS.gene48286:CDS | 35.0% | |
| ATTTAACCGGTGAGATAATC+AGG | - | chr8.1:20342627-20342646 | None:intergenic | 35.0% | |
| CCACAATTTCATTACTCGTA+TGG | + | chr8.1:20342099-20342118 | MS.gene48286:intron | 35.0% | |
| CCATACGAGTAATGAAATTG+TGG | - | chr8.1:20342102-20342121 | None:intergenic | 35.0% | |
| CCCTAAACATATCATTCTCA+GGG | - | chr8.1:20341146-20341165 | None:intergenic | 35.0% | |
| CCCTGAGAATGATATGTTTA+GGG | + | chr8.1:20341143-20341162 | MS.gene48286:CDS | 35.0% | |
| CTACGTGTATGTTGTATGTT+TGG | - | chr8.1:20340617-20340636 | None:intergenic | 35.0% | |
| GATAACGAAGAAGATTGCTT+CGG | - | chr8.1:20340676-20340695 | None:intergenic | 35.0% | |
| GGGAATAAAAACATGGGAAA+TGG | - | chr8.1:20341589-20341608 | None:intergenic | 35.0% | |
| GTAGTATTTGACACCATTTG+TGG | + | chr8.1:20341080-20341099 | MS.gene48286:intron | 35.0% | |
| TAGACATATGTCCTGATTCA+AGG | - | chr8.1:20340946-20340965 | None:intergenic | 35.0% | |
| TCAACTTTGTGAATAGCACA+AGG | - | chr8.1:20342754-20342773 | None:intergenic | 35.0% | |
| TCCCTAAACATATCATTCTC+AGG | - | chr8.1:20341147-20341166 | None:intergenic | 35.0% | |
| TGCAATTCTATACTCTTAGG+GGG | + | chr8.1:20341452-20341471 | MS.gene48286:intron | 35.0% | |
| TTATTCCCAAGAAAATGGGT+GGG | + | chr8.1:20341601-20341620 | MS.gene48286:intron | 35.0% | |
| TTATTGTAGTGCCTTGAATC+AGG | + | chr8.1:20340932-20340951 | MS.gene48286:intron | 35.0% | |
| TTGAATCAGGACATATGTCT+AGG | + | chr8.1:20340945-20340964 | MS.gene48286:intron | 35.0% | |
| TTTAATTGTGATCAGGGTCA+AGG | + | chr8.1:20343048-20343067 | MS.gene48286:intron | 35.0% | |
| TTTATTCCCAAGAAAATGGG+TGG | + | chr8.1:20341600-20341619 | MS.gene48286:intron | 35.0% | |
| ! | ACTTGTTGGAAGCTTAAGTT+TGG | + | chr8.1:20342021-20342040 | MS.gene48286:intron | 35.0% |
| ! | CCGTATTGACATTACTTGAA+TGG | + | chr8.1:20342785-20342804 | MS.gene48286:intron | 35.0% |
| ! | CCTATGTTTGTTACAAAGCT+AGG | + | chr8.1:20341534-20341553 | MS.gene48286:intron | 35.0% |
| ! | TATCTGTGTTGTGAGGTTTT+AGG | + | chr8.1:20342728-20342747 | MS.gene48286:intron | 35.0% |
| ! | TGGGAATGATTTTTACAACC+AGG | - | chr8.1:20341487-20341506 | None:intergenic | 35.0% |
| ! | TTATTCCCACCCATTTTCTT+GGG | - | chr8.1:20341609-20341628 | None:intergenic | 35.0% |
| ! | TTTATTCCCACCCATTTTCT+TGG | - | chr8.1:20341610-20341629 | None:intergenic | 35.0% |
| !! | AAATGCTTCGCTGATTTATG+TGG | + | chr8.1:20342146-20342165 | MS.gene48286:CDS | 35.0% |
| !! | AATGCTTCGCTGATTTATGT+GGG | + | chr8.1:20342147-20342166 | MS.gene48286:CDS | 35.0% |
| !! | CAGTTGTTTTCCTATAAGTG+AGG | + | chr8.1:20342353-20342372 | MS.gene48286:CDS | 35.0% |
| !! | CCACAGTTTCTGAAGATTTT+GGG | + | chr8.1:20342973-20342992 | MS.gene48286:intron | 35.0% |
| !! | CCTAGCTTTGTAACAAACAT+AGG | - | chr8.1:20341537-20341556 | None:intergenic | 35.0% |
| !!! | TGTATGTTTGGTTCTGCTTT+TGG | - | chr8.1:20340605-20340624 | None:intergenic | 35.0% |
| AGGAGTGAGCATCACAAAAT+TGG | - | chr8.1:20342560-20342579 | None:intergenic | 40.0% | |
| AGTGACTAGTGACATCATTG+TGG | - | chr8.1:20342441-20342460 | None:intergenic | 40.0% | |
| ATGAGGAATCTTCTGGTGAA+AGG | + | chr8.1:20340371-20340390 | MS.gene48286:CDS | 40.0% | |
| ATGGCATAGAGAGTTAGGAT+TGG | + | chr8.1:20341778-20341797 | MS.gene48286:intron | 40.0% | |
| CAACACAGATACTCTATGAC+TGG | - | chr8.1:20342719-20342738 | None:intergenic | 40.0% | |
| CAATTGTTTATTCCCACGTG+CGG | - | chr8.1:20341921-20341940 | None:intergenic | 40.0% | |
| CCCAAAATCTTCAGAAACTG+TGG | - | chr8.1:20342976-20342995 | None:intergenic | 40.0% | |
| GAATATAGGTGGTTACTAGG+TGG | - | chr8.1:20341668-20341687 | None:intergenic | 40.0% | |
| GTAAACATGGGGAATATAGG+TGG | - | chr8.1:20341679-20341698 | None:intergenic | 40.0% | |
| TAGCACTAAGATCAATGCTC+CGG | - | chr8.1:20343094-20343113 | None:intergenic | 40.0% | |
| TGGATTACACTTGCTTCTAG+AGG | - | chr8.1:20342207-20342226 | None:intergenic | 40.0% | |
| TTGAGCCAGTATTACCTTAC+AGG | + | chr8.1:20341364-20341383 | MS.gene48286:intron | 40.0% | |
| ! | ACACTTGCTTCTAGAGGATT+TGG | - | chr8.1:20342201-20342220 | None:intergenic | 40.0% |
| ! | ATAGAGAGTTAGGATTGGCA+GGG | + | chr8.1:20341783-20341802 | MS.gene48286:intron | 40.0% |
| ! | CACAGTTTTGCTCTCTAAAC+TGG | + | chr8.1:20341035-20341054 | MS.gene48286:intron | 40.0% |
| ! | CATAGAGTATCTGTGTTGTG+AGG | + | chr8.1:20342721-20342740 | MS.gene48286:intron | 40.0% |
| ! | GAAAGTGATAGAGGAGGTAT+GGG | + | chr8.1:20340824-20340843 | MS.gene48286:intron | 40.0% |
| !! | AAGTTTTATCCCCACCTTCA+TGG | - | chr8.1:20341639-20341658 | None:intergenic | 40.0% |
| !! | AGTTTTATCCCCACCTTCAT+GGG | - | chr8.1:20341638-20341657 | None:intergenic | 40.0% |
| !! | ATGCTTCGCTGATTTATGTG+GGG | + | chr8.1:20342148-20342167 | MS.gene48286:CDS | 40.0% |
| !! | GCCACAGTTTCTGAAGATTT+TGG | + | chr8.1:20342972-20342991 | MS.gene48286:intron | 40.0% |
| !! | TCTGGTGAAAGGTAATGGAA+TGG | + | chr8.1:20340382-20340401 | MS.gene48286:intron | 40.0% |
| !!! | ATGTTTGGTTCTGCTTTTGG+AGG | - | chr8.1:20340602-20340621 | None:intergenic | 40.0% |
| AACTCTCTATGCCATCAGAG+AGG | - | chr8.1:20341773-20341792 | None:intergenic | 45.0% | |
| AAGAAACCGTCACCTATGTG+AGG | + | chr8.1:20342238-20342257 | MS.gene48286:CDS | 45.0% | |
| AAGCAACCTCACATAGGTGA+CGG | - | chr8.1:20342247-20342266 | None:intergenic | 45.0% | |
| CGAAAGTGATAGAGGAGGTA+TGG | + | chr8.1:20340823-20340842 | MS.gene48286:intron | 45.0% | |
| CGCACGTGGGAATAAACAAT+TGG | + | chr8.1:20341919-20341938 | MS.gene48286:intron | 45.0% | |
| CTCTGATGGCATAGAGAGTT+AGG | + | chr8.1:20341773-20341792 | MS.gene48286:intron | 45.0% | |
| GACAGAAATGAATGGCGATG+TGG | + | chr8.1:20341192-20341211 | MS.gene48286:CDS | 45.0% | |
| GGGGAATATAGGTGGTTACT+AGG | - | chr8.1:20341671-20341690 | None:intergenic | 45.0% | |
| GGTTGCTTCGAAAGTGATAG+AGG | + | chr8.1:20340815-20340834 | MS.gene48286:CDS | 45.0% | |
| GTAAGGCCTGATTATCTCAC+CGG | + | chr8.1:20342618-20342637 | MS.gene48286:intron | 45.0% | |
| TATGTTACCTGCCTCTCTGA+TGG | + | chr8.1:20341759-20341778 | MS.gene48286:intron | 45.0% | |
| TCAAGGAAGTTTCTTTCGCC+TGG | + | chr8.1:20343065-20343084 | MS.gene48286:CDS | 45.0% | |
| TGCTTCGAAAGTGATAGAGG+AGG | + | chr8.1:20340818-20340837 | MS.gene48286:CDS | 45.0% | |
| ! | ACCTTGCCTACTCTAGAGAA+GGG | - | chr8.1:20342600-20342619 | None:intergenic | 45.0% |
| ! | CATAGAGAGTTAGGATTGGC+AGG | + | chr8.1:20341782-20341801 | MS.gene48286:intron | 45.0% |
| ! | CTTATGAGAGAGCGGATTCA+CGG | - | chr8.1:20341825-20341844 | None:intergenic | 45.0% |
| ! | TACCTTGCCTACTCTAGAGA+AGG | - | chr8.1:20342601-20342620 | None:intergenic | 45.0% |
| !! | ATTGCTCTAGAGAGAGAAGC+AGG | + | chr8.1:20340793-20340812 | MS.gene48286:CDS | 45.0% |
| !! | CACAAACCCTTCTCTAGAGT+AGG | + | chr8.1:20342591-20342610 | MS.gene48286:CDS | 45.0% |
| !! | TCTCTAGAGCAATGCACTTC+AGG | - | chr8.1:20340786-20340805 | None:intergenic | 45.0% |
| !! | TCTCTAGAGTAGGCAAGGTA+AGG | + | chr8.1:20342601-20342620 | MS.gene48286:intron | 45.0% |
| !! | TTGCTCTAGAGAGAGAAGCA+GGG | + | chr8.1:20340794-20340813 | MS.gene48286:CDS | 45.0% |
| !!! | TTTGGTTCTGCTTTTGGAGG+AGG | - | chr8.1:20340599-20340618 | None:intergenic | 45.0% |
| AGCTAGTGTGACAGCGAGTT+TGG | - | chr8.1:20342845-20342864 | None:intergenic | 50.0% | |
| CAATGCTTCTTTCCGCACGT+GGG | + | chr8.1:20341906-20341925 | MS.gene48286:intron | 50.0% | |
| CACTAAGATCAATGCTCCGG+CGG | - | chr8.1:20343091-20343110 | None:intergenic | 50.0% | |
| GGGTTTGTGTTTCCCTGAAC+AGG | - | chr8.1:20342580-20342599 | None:intergenic | 50.0% | |
| GTGATGCTCACTCCTGTTCA+GGG | + | chr8.1:20342565-20342584 | MS.gene48286:CDS | 50.0% | |
| TGTGATGCTCACTCCTGTTC+AGG | + | chr8.1:20342564-20342583 | MS.gene48286:CDS | 50.0% | |
| ! | GCTGATGGACCCTCACTTAT+AGG | - | chr8.1:20342366-20342385 | None:intergenic | 50.0% |
| !! | ACCCTTCTCTAGAGTAGGCA+AGG | + | chr8.1:20342596-20342615 | MS.gene48286:CDS | 50.0% |
| !! | CTTAGGGGGTGTTTGTTTCC+TGG | + | chr8.1:20341466-20341485 | MS.gene48286:intron | 50.0% |
| CCATCAGCAAGCCGTCTTCA+TGG | + | chr8.1:20342378-20342397 | MS.gene48286:CDS | 55.0% | |
| CTCTATGCCATCAGAGAGGC+AGG | - | chr8.1:20341769-20341788 | None:intergenic | 55.0% | |
| GCAATGCTTCTTTCCGCACG+TGG | + | chr8.1:20341905-20341924 | MS.gene48286:intron | 55.0% | |
| ! | ATGAGAGAGCGGATTCACGG+CGG | - | chr8.1:20341822-20341841 | None:intergenic | 55.0% |
| !! | CCATGAAGACGGCTTGCTGA+TGG | - | chr8.1:20342381-20342400 | None:intergenic | 55.0% |
| AGTTTCTTTCGCCTGGCCGC+CGG | + | chr8.1:20343072-20343091 | MS.gene48286:CDS | 60.0% | |
| CGGTTTCTTGCAGCAGCTGC+TGG | - | chr8.1:20342227-20342246 | None:intergenic | 60.0% | |
| ! | TGAGAGAGCGGATTCACGGC+GGG | - | chr8.1:20341821-20341840 | None:intergenic | 60.0% |
| AGATCAATGCTCCGGCGGCC+AGG | - | chr8.1:20343086-20343105 | None:intergenic | 65.0% | |
| ! | GAGAGAGCGGATTCACGGCG+GGG | - | chr8.1:20341820-20341839 | None:intergenic | 65.0% |
| ! | GAGCGGATTCACGGCGGGGC+AGG | - | chr8.1:20341816-20341835 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 20340367 | 20343151 | 20340367 | ID=MS.gene48286 |
| chr8.1 | mRNA | 20340367 | 20343151 | 20340367 | ID=MS.gene48286.t1;Parent=MS.gene48286 |
| chr8.1 | exon | 20340367 | 20340392 | 20340367 | ID=MS.gene48286.t1.exon1;Parent=MS.gene48286.t1 |
| chr8.1 | CDS | 20340367 | 20340392 | 20340367 | ID=cds.MS.gene48286.t1;Parent=MS.gene48286.t1 |
| chr8.1 | exon | 20340755 | 20340839 | 20340755 | ID=MS.gene48286.t1.exon2;Parent=MS.gene48286.t1 |
| chr8.1 | CDS | 20340755 | 20340839 | 20340755 | ID=cds.MS.gene48286.t1;Parent=MS.gene48286.t1 |
| chr8.1 | exon | 20341084 | 20341293 | 20341084 | ID=MS.gene48286.t1.exon3;Parent=MS.gene48286.t1 |
| chr8.1 | CDS | 20341084 | 20341293 | 20341084 | ID=cds.MS.gene48286.t1;Parent=MS.gene48286.t1 |
| chr8.1 | exon | 20342137 | 20342259 | 20342137 | ID=MS.gene48286.t1.exon4;Parent=MS.gene48286.t1 |
| chr8.1 | CDS | 20342137 | 20342259 | 20342137 | ID=cds.MS.gene48286.t1;Parent=MS.gene48286.t1 |
| chr8.1 | exon | 20342342 | 20342399 | 20342342 | ID=MS.gene48286.t1.exon5;Parent=MS.gene48286.t1 |
| chr8.1 | CDS | 20342342 | 20342399 | 20342342 | ID=cds.MS.gene48286.t1;Parent=MS.gene48286.t1 |
| chr8.1 | exon | 20342544 | 20342617 | 20342544 | ID=MS.gene48286.t1.exon6;Parent=MS.gene48286.t1 |
| chr8.1 | CDS | 20342544 | 20342617 | 20342544 | ID=cds.MS.gene48286.t1;Parent=MS.gene48286.t1 |
| chr8.1 | exon | 20343063 | 20343151 | 20343063 | ID=MS.gene48286.t1.exon7;Parent=MS.gene48286.t1 |
| chr8.1 | CDS | 20343063 | 20343151 | 20343063 | ID=cds.MS.gene48286.t1;Parent=MS.gene48286.t1 |
| Gene Sequence |
| Protein sequence |
