AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48342

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48342.t1 MTR_4g105170 95.789 190 6 1 1 190 1 188 2.16e-126 353
MS.gene48342.t1 MTR_3g077240 73.743 179 44 3 1 178 1 177 1.39e-85 250
MS.gene48342.t1 MTR_7g033800 62.234 188 54 4 1 188 1 171 1.01e-72 217
MS.gene48342.t1 MTR_6g005070 82.301 113 18 1 1 113 1 111 3.04e-65 197
MS.gene48342.t1 MTR_6g005080 79.130 115 22 1 1 115 2 114 9.88e-64 193
MS.gene48342.t1 MTR_8g040900 66.917 133 40 1 1 133 1 129 1.31e-53 171
MS.gene48342.t1 MTR_5g083230 64.957 117 38 1 9 122 4 120 1.81e-50 160
MS.gene48342.t1 MTR_3g073690 64.754 122 43 0 5 126 3 124 2.40e-50 161
MS.gene48342.t1 MTR_5g017950 69.091 110 34 0 5 114 2 111 4.88e-50 164
MS.gene48342.t1 MTR_3g452660 65.179 112 39 0 6 117 2 113 5.16e-48 158
MS.gene48342.t1 MTR_4g083680 65.385 104 36 0 10 113 14 117 3.49e-47 152
MS.gene48342.t1 MTR_3g031660 64.423 104 37 0 9 112 5 108 8.01e-47 152
MS.gene48342.t1 MTR_2g068760 62.617 107 40 0 10 116 12 118 8.81e-47 151
MS.gene48342.t1 MTR_5g083010 53.383 133 62 0 9 141 9 141 5.92e-46 149
MS.gene48342.t1 MTR_3g071590 66.019 103 35 0 10 112 7 109 8.76e-46 148
MS.gene48342.t1 MTR_5g083960 62.385 109 41 0 10 118 38 146 8.75e-45 147
MS.gene48342.t1 MTR_3g094690 61.468 109 42 0 10 118 46 154 2.09e-44 147
MS.gene48342.t1 MTR_3g071420 63.000 100 37 0 9 108 12 111 2.57e-42 140
MS.gene48342.t1 MTR_2g093310 57.009 107 46 0 10 116 32 138 3.39e-42 140
MS.gene48342.t1 MTR_3g094690 60.550 109 42 1 10 118 46 153 6.32e-42 141
MS.gene48342.t1 MTR_5g075020 58.015 131 54 1 10 140 42 171 6.09e-40 135
MS.gene48342.t1 MTR_4g060950 53.448 116 53 1 2 116 15 130 8.51e-40 134
MS.gene48342.t1 MTR_5g075020 58.015 131 54 1 10 140 46 175 1.31e-39 135
MS.gene48342.t1 MTR_7g096530 59.130 115 43 2 1 111 1 115 4.69e-39 133
MS.gene48342.t1 MTR_1g095850 58.416 101 42 0 12 112 73 173 1.53e-38 132
MS.gene48342.t1 MTR_8g036085 57.944 107 44 1 11 116 23 129 2.03e-38 132
MS.gene48342.t1 MTR_8g036105 54.918 122 52 2 11 131 18 137 5.50e-36 125
MS.gene48342.t1 MTR_1g070220 62.105 95 35 1 11 104 15 109 9.73e-36 124
MS.gene48342.t1 MTR_7g028905 51.376 109 53 0 10 118 4 112 1.38e-35 121
MS.gene48342.t1 MTR_7g074990 62.105 95 35 1 11 104 20 114 1.82e-35 124
MS.gene48342.t1 MTR_1g070205 37.572 173 98 3 11 177 12 180 4.71e-34 120
MS.gene48342.t1 MTR_6g027710 51.852 108 51 1 10 116 39 146 6.55e-34 120
MS.gene48342.t1 MTR_5g080470 52.475 101 47 1 6 105 2 102 6.00e-33 117
MS.gene48342.t1 MTR_8g079660 48.077 104 54 0 11 114 8 111 7.32e-33 118
MS.gene48342.t1 MTR_7g096610 58.333 96 39 1 10 104 7 102 1.38e-32 117
MS.gene48342.t1 MTR_5g093010 48.598 107 55 0 12 118 6 112 7.20e-32 112
MS.gene48342.t1 MTR_7g075230 44.643 168 73 7 11 171 12 166 9.78e-32 114
MS.gene48342.t1 MTR_8g079620 48.077 104 54 0 11 114 8 111 9.85e-31 112
MS.gene48342.t1 MTR_4g107450 48.958 96 49 0 12 107 11 106 4.78e-29 109
MS.gene48342.t1 MTR_8g079580 46.667 105 55 1 11 114 8 112 2.71e-28 105
MS.gene48342.t1 MTR_6g011200 44.898 98 53 1 9 105 7 104 9.17e-28 105
MS.gene48342.t1 MTR_6g027700 48.421 95 48 1 11 104 7 101 1.67e-27 103
MS.gene48342.t1 MTR_8g017090 43.000 100 57 0 12 111 13 112 1.32e-25 100
MS.gene48342.t1 MTR_6g011230 36.220 127 72 2 12 130 12 137 1.44e-24 95.5
MS.gene48342.t1 MTR_6g011250 49.398 83 41 1 9 90 7 89 2.23e-24 94.7
MS.gene48342.t1 MTR_4g099230 40.385 104 60 2 12 114 3 105 1.20e-23 92.0
MS.gene48342.t1 MTR_2g100020 43.011 93 53 0 12 104 20 112 2.81e-23 94.0
MS.gene48342.t1 MTR_5g085390 40.187 107 62 2 9 114 7 112 2.37e-20 85.1
MS.gene48342.t1 MTR_4g088035 35.556 90 58 0 10 99 5 94 6.10e-17 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48342.t1 AT5G63090 68.333 180 45 3 1 171 1 177 2.31e-78 232
MS.gene48342.t1 AT5G63090 68.333 180 45 3 1 171 1 177 2.31e-78 232
MS.gene48342.t1 AT5G63090 68.333 180 45 3 1 171 1 177 2.31e-78 232
MS.gene48342.t1 AT5G63090 68.333 180 45 3 1 171 1 177 2.31e-78 232
MS.gene48342.t1 AT3G27650 78.182 110 24 0 5 114 33 142 2.94e-62 190
MS.gene48342.t1 AT1G65620 68.217 129 39 1 1 129 1 127 1.59e-52 167
MS.gene48342.t1 AT1G65620 68.217 129 39 1 1 129 1 127 1.59e-52 167
MS.gene48342.t1 AT1G65620 68.217 129 39 1 1 129 1 127 1.59e-52 167
MS.gene48342.t1 AT1G65620 68.217 129 39 1 1 129 1 127 1.59e-52 167
MS.gene48342.t1 AT1G65620 68.217 129 39 1 1 129 1 127 1.59e-52 167
MS.gene48342.t1 AT5G66870 60.839 143 45 3 1 142 1 133 7.28e-51 166
MS.gene48342.t1 AT2G30130 64.286 112 40 0 9 120 6 117 2.81e-49 158
MS.gene48342.t1 AT2G23660 62.931 116 43 0 9 124 3 118 2.97e-49 162
MS.gene48342.t1 AT2G23660 62.931 116 43 0 9 124 3 118 2.97e-49 162
MS.gene48342.t1 AT2G23660 62.931 116 43 0 9 124 3 118 2.97e-49 162
MS.gene48342.t1 AT1G31320 72.727 88 24 0 10 97 12 99 3.63e-44 145
MS.gene48342.t1 AT1G16530 59.829 117 45 2 10 124 13 129 1.66e-43 143
MS.gene48342.t1 AT1G07900 61.165 103 40 0 10 112 32 134 4.86e-43 142
MS.gene48342.t1 AT2G30340 60.952 105 41 0 10 114 52 156 1.31e-42 144
MS.gene48342.t1 AT2G30340 60.952 105 41 0 10 114 51 155 1.36e-42 144
MS.gene48342.t1 AT2G28500 60.194 103 41 0 10 112 54 156 2.61e-41 139
MS.gene48342.t1 AT3G11090 57.944 107 45 0 9 115 9 115 4.88e-41 136
MS.gene48342.t1 AT2G40470 63.810 105 38 0 10 114 19 123 7.80e-39 132
MS.gene48342.t1 AT2G40470 63.810 105 38 0 10 114 44 148 1.79e-38 132
MS.gene48342.t1 AT3G26660 55.000 100 45 0 12 111 6 105 1.04e-37 127
MS.gene48342.t1 AT3G26620 55.000 100 45 0 12 111 6 105 1.14e-37 126
MS.gene48342.t1 AT3G03760 56.731 104 44 1 10 112 50 153 2.08e-37 130
MS.gene48342.t1 AT4G00210 54.472 123 53 2 1 122 1 121 4.28e-37 128
MS.gene48342.t1 AT2G45420 63.043 92 33 1 14 104 40 131 1.38e-35 125
MS.gene48342.t1 AT4G00220 57.692 104 43 1 14 116 20 123 1.80e-35 124
MS.gene48342.t1 AT2G31310 38.503 187 84 5 10 170 6 187 6.01e-35 122
MS.gene48342.t1 AT2G42430 55.963 109 43 2 1 104 1 109 2.05e-34 122
MS.gene48342.t1 AT3G50510 45.902 122 64 1 10 129 11 132 9.11e-34 119
MS.gene48342.t1 AT3G50510 45.902 122 64 1 10 129 11 132 9.11e-34 119
MS.gene48342.t1 AT3G58190 56.250 96 41 1 11 105 11 106 3.22e-33 118
MS.gene48342.t1 AT2G45410 52.542 118 53 2 14 130 19 134 4.72e-33 117
MS.gene48342.t1 AT2G42440 53.608 97 44 1 10 105 6 102 2.09e-32 117
MS.gene48342.t1 AT5G06080 47.368 114 59 1 6 118 2 115 4.13e-32 114
MS.gene48342.t1 AT5G35900 49.000 100 51 0 12 111 6 105 1.07e-30 111
MS.gene48342.t1 AT3G13850 45.745 94 51 0 12 105 37 130 5.26e-28 106
MS.gene48342.t1 AT3G47870 41.748 103 60 0 12 114 37 139 4.29e-25 99.8
MS.gene48342.t1 AT1G72980 41.905 105 61 0 1 105 3 107 1.37e-23 93.2
MS.gene48342.t1 AT4G22700 39.640 111 65 2 12 121 6 115 6.26e-21 85.9
MS.gene48342.t1 AT1G06280 44.156 77 43 0 12 88 25 101 7.31e-18 78.2
MS.gene48342.t1 AT2G19820 34.694 98 63 1 2 98 3 100 3.13e-15 69.3
MS.gene48342.t1 AT5G15060 40.260 77 44 1 8 82 14 90 4.31e-15 69.3
MS.gene48342.t1 AT3G27940 38.806 67 41 0 10 76 4 70 1.11e-11 60.5
MS.gene48342.t1 AT3G27940 38.806 67 41 0 10 76 4 70 1.11e-11 60.5
MS.gene48342.t1 AT3G27940 38.806 67 41 0 10 76 4 70 1.11e-11 60.5

Find 55 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAACGTACACAAAATATT+TGG 0.186655 8.3:-17487545 MS.gene48342:CDS
CTAAACTGTCTTTGTGGAAT+TGG 0.275981 8.3:+17487254 None:intergenic
CGAGTTAGGGATCCAGTTTA+TGG 0.289758 8.3:-17487434 MS.gene48342:CDS
AGAGAGGCTGGAGGAGGTGG+AGG 0.297872 8.3:+17487308 None:intergenic
ACGAAGCCGAAGCACGAGTT+AGG 0.305462 8.3:-17487448 MS.gene48342:CDS
CTTTACCTTATTCTCTTCCT+TGG 0.333470 8.3:-17487181 MS.gene48342:CDS
ATGAGTGAAGGTGGAGGAGG+AGG 0.339514 8.3:-17487137 MS.gene48342:CDS
TCAGTCCAAGGAAGAGAATA+AGG 0.339719 8.3:+17487176 None:intergenic
AGTGAAGGTGGAGGAGGAGG+AGG 0.357862 8.3:-17487134 MS.gene48342:CDS
GAAGGTGGAGGAGGAGGAGG+AGG 0.363314 8.3:-17487131 MS.gene48342:CDS
AAAGAAGAATAAGTAGTAGT+AGG 0.401220 8.3:+17487200 None:intergenic
GCTCCTACACATCCATAAAC+TGG 0.405024 8.3:+17487422 None:intergenic
GAAAGAGAGGCTGGAGGAGG+TGG 0.409459 8.3:+17487305 None:intergenic
CTTCCACTAAACTGTCTTTG+TGG 0.427794 8.3:+17487248 None:intergenic
GGCTCTTCTGGAGGGAAGTA+AGG 0.432439 8.3:+17487578 None:intergenic
TGGAGGAGGTGGAGGGATAT+CGG 0.435988 8.3:+17487316 None:intergenic
AGTTAACTGCATCCTCCCTT+TGG 0.438074 8.3:+17487480 None:intergenic
GATATGAGTGAAGGTGGAGG+AGG 0.442790 8.3:-17487140 MS.gene48342:CDS
ATTCCACAAAGACAGTTTAG+TGG 0.446210 8.3:-17487251 MS.gene48342:CDS
TGGATCCCTAACTCGTGCTT+CGG 0.456667 8.3:+17487442 None:intergenic
CAGTTTAGTGGAAGAAATGA+AGG 0.473637 8.3:-17487239 MS.gene48342:CDS
TGAGGCACAGAAAGAGAGGC+TGG 0.482119 8.3:+17487296 None:intergenic
ACTGTCTTTGTGGAATTGGT+TGG 0.483148 8.3:+17487258 None:intergenic
TTGAGGAGAAAATGCATGCC+AGG 0.496470 8.3:-17487614 MS.gene48342:CDS
ACAAGTTCAAAGGCTTCAAA+AGG 0.500774 8.3:-17487381 MS.gene48342:CDS
CTGCATCCTCCCTTTGGTGA+GGG 0.501198 8.3:+17487486 None:intergenic
GCCTCTCTTTCTGTGCCTCA+AGG 0.505853 8.3:-17487293 MS.gene48342:CDS
CGAAGCCGAAGCACGAGTTA+GGG 0.512333 8.3:-17487447 MS.gene48342:CDS
GAGAGGCTGGAGGAGGTGGA+GGG 0.516068 8.3:+17487309 None:intergenic
CATCCTCCCTTTGGTGAGGG+AGG 0.527585 8.3:+17487489 None:intergenic
TTCTACAAAGACAAGTTCAA+AGG 0.528529 8.3:-17487391 MS.gene48342:CDS
GAGGTGGAGGGATATCGGTG+AGG 0.544709 8.3:+17487321 None:intergenic
AGGTGGAGGGATATCGGTGA+GGG 0.546572 8.3:+17487322 None:intergenic
GTGCTGCCTGCAAATTCTTG+AGG 0.549706 8.3:-17487631 MS.gene48342:CDS
ACAGAAAGAGAGGCTGGAGG+AGG 0.555018 8.3:+17487302 None:intergenic
CGAACTCCTCCCTCACCAAA+GGG 0.555403 8.3:-17487495 MS.gene48342:CDS
ACTGCATCCTCCCTTTGGTG+AGG 0.557366 8.3:+17487485 None:intergenic
TTGTCTTTGTAGAAAAGAGA+TGG 0.561057 8.3:+17487400 None:intergenic
GAGGGTATAGCGAAGAAGAT+CGG 0.563089 8.3:+17487340 None:intergenic
AAGAATTTGCAGGCAGCACA+AGG 0.573114 8.3:+17487635 None:intergenic
ACGAACTCCTCCCTCACCAA+AGG 0.580542 8.3:-17487496 MS.gene48342:CDS
GATCCAGTTTATGGATGTGT+AGG 0.582057 8.3:-17487425 MS.gene48342:CDS
TCCTTGAGGCACAGAAAGAG+AGG 0.595065 8.3:+17487292 None:intergenic
TCCTCAGTGGATATGAGTGA+AGG 0.615767 8.3:-17487149 MS.gene48342:CDS
TAAGGTGCAAAGATGCAACC+TGG 0.617157 8.3:+17487596 None:intergenic
TCAGTGGATATGAGTGAAGG+TGG 0.618537 8.3:-17487146 MS.gene48342:CDS
GTGGATATGAGTGAAGGTGG+AGG 0.633891 8.3:-17487143 MS.gene48342:CDS
ACTGAGGAAGTATCAGTCCA+AGG 0.638918 8.3:+17487164 None:intergenic
TTGGACTGATACTTCCTCAG+TGG 0.639081 8.3:-17487162 MS.gene48342:CDS
AGTTTAGTGGAAGAAATGAA+GGG 0.640159 8.3:-17487238 MS.gene48342:CDS
ACAAGGTGAATTGTATGCGC+TGG 0.642277 8.3:+17487652 None:intergenic
TGGACTGATATCATTCCTTG+AGG 0.655168 8.3:+17487278 None:intergenic
ACTCCTCCCTCACCAAAGGG+AGG 0.660217 8.3:-17487492 MS.gene48342:CDS
GGCACAGAAAGAGAGGCTGG+AGG 0.697106 8.3:+17487299 None:intergenic
ACCTTCACTCATATCCACTG+AGG 0.758906 8.3:+17487148 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAGAAGAATAAGTAGTAGT+AGG + chr8.3:17487583-17487602 None:intergenic 25.0%
AGTTTAGTGGAAGAAATGAA+GGG - chr8.3:17487542-17487561 MS.gene48342:CDS 30.0%
GCAAACGTACACAAAATATT+TGG - chr8.3:17487235-17487254 MS.gene48342:CDS 30.0%
TTCTACAAAGACAAGTTCAA+AGG - chr8.3:17487389-17487408 MS.gene48342:CDS 30.0%
TTGTCTTTGTAGAAAAGAGA+TGG + chr8.3:17487383-17487402 None:intergenic 30.0%
! TGTACGTTTGCAAATTTTTG+AGG + chr8.3:17487226-17487245 None:intergenic 30.0%
ACAAGTTCAAAGGCTTCAAA+AGG - chr8.3:17487399-17487418 MS.gene48342:CDS 35.0%
ATTCCACAAAGACAGTTTAG+TGG - chr8.3:17487529-17487548 MS.gene48342:CDS 35.0%
CAGTTTAGTGGAAGAAATGA+AGG - chr8.3:17487541-17487560 MS.gene48342:CDS 35.0%
CTAAACTGTCTTTGTGGAAT+TGG + chr8.3:17487529-17487548 None:intergenic 35.0%
CTTTACCTTATTCTCTTCCT+TGG - chr8.3:17487599-17487618 MS.gene48342:CDS 35.0%
! TTTTCTCCTCAAGAATTTGC+AGG + chr8.3:17487158-17487177 None:intergenic 35.0%
ACTGTCTTTGTGGAATTGGT+TGG + chr8.3:17487525-17487544 None:intergenic 40.0%
CTTCCACTAAACTGTCTTTG+TGG + chr8.3:17487535-17487554 None:intergenic 40.0%
GATCCAGTTTATGGATGTGT+AGG - chr8.3:17487355-17487374 MS.gene48342:CDS 40.0%
TCAGTCCAAGGAAGAGAATA+AGG + chr8.3:17487607-17487626 None:intergenic 40.0%
TGGACTGATATCATTCCTTG+AGG + chr8.3:17487505-17487524 None:intergenic 40.0%
!!! AATTTTTGAGGCTCTTCTGG+AGG + chr8.3:17487214-17487233 None:intergenic 40.0%
!!! ATTTTTGAGGCTCTTCTGGA+GGG + chr8.3:17487213-17487232 None:intergenic 40.0%
!!! GCAAATTTTTGAGGCTCTTC+TGG + chr8.3:17487217-17487236 None:intergenic 40.0%
AAGAATTTGCAGGCAGCACA+AGG + chr8.3:17487148-17487167 None:intergenic 45.0%
ACAAGGTGAATTGTATGCGC+TGG + chr8.3:17487131-17487150 None:intergenic 45.0%
ACCTTCACTCATATCCACTG+AGG + chr8.3:17487635-17487654 None:intergenic 45.0%
AGTTAACTGCATCCTCCCTT+TGG + chr8.3:17487303-17487322 None:intergenic 45.0%
CGAGTTAGGGATCCAGTTTA+TGG - chr8.3:17487346-17487365 MS.gene48342:CDS 45.0%
GCTCCTACACATCCATAAAC+TGG + chr8.3:17487361-17487380 None:intergenic 45.0%
TAAGGTGCAAAGATGCAACC+TGG + chr8.3:17487187-17487206 None:intergenic 45.0%
TCAGTGGATATGAGTGAAGG+TGG - chr8.3:17487634-17487653 MS.gene48342:CDS 45.0%
TCCTCAGTGGATATGAGTGA+AGG - chr8.3:17487631-17487650 MS.gene48342:CDS 45.0%
TTGAGGAGAAAATGCATGCC+AGG - chr8.3:17487166-17487185 MS.gene48342:CDS 45.0%
TTGGACTGATACTTCCTCAG+TGG - chr8.3:17487618-17487637 MS.gene48342:CDS 45.0%
! GAGGGTATAGCGAAGAAGAT+CGG + chr8.3:17487443-17487462 None:intergenic 45.0%
!! ACTGAGGAAGTATCAGTCCA+AGG + chr8.3:17487619-17487638 None:intergenic 45.0%
GATATGAGTGAAGGTGGAGG+AGG - chr8.3:17487640-17487659 MS.gene48342:CDS 50.0%
GTGCTGCCTGCAAATTCTTG+AGG - chr8.3:17487149-17487168 MS.gene48342:CDS 50.0%
GTGGATATGAGTGAAGGTGG+AGG - chr8.3:17487637-17487656 MS.gene48342:CDS 50.0%
TCCTTGAGGCACAGAAAGAG+AGG + chr8.3:17487491-17487510 None:intergenic 50.0%
TGGATCCCTAACTCGTGCTT+CGG + chr8.3:17487341-17487360 None:intergenic 50.0%
ACAGAAAGAGAGGCTGGAGG+AGG + chr8.3:17487481-17487500 None:intergenic 55.0%
ACGAACTCCTCCCTCACCAA+AGG - chr8.3:17487284-17487303 MS.gene48342:CDS 55.0%
ACGAAGCCGAAGCACGAGTT+AGG - chr8.3:17487332-17487351 MS.gene48342:CDS 55.0%
ACTGCATCCTCCCTTTGGTG+AGG + chr8.3:17487298-17487317 None:intergenic 55.0%
AGGTGGAGGGATATCGGTGA+GGG + chr8.3:17487461-17487480 None:intergenic 55.0%
ATGAGTGAAGGTGGAGGAGG+AGG - chr8.3:17487643-17487662 MS.gene48342:CDS 55.0%
CGAACTCCTCCCTCACCAAA+GGG - chr8.3:17487285-17487304 MS.gene48342:CDS 55.0%
CGAAGCCGAAGCACGAGTTA+GGG - chr8.3:17487333-17487352 MS.gene48342:CDS 55.0%
CTGCATCCTCCCTTTGGTGA+GGG + chr8.3:17487297-17487316 None:intergenic 55.0%
GCCTCTCTTTCTGTGCCTCA+AGG - chr8.3:17487487-17487506 MS.gene48342:CDS 55.0%
TGAGGCACAGAAAGAGAGGC+TGG + chr8.3:17487487-17487506 None:intergenic 55.0%
TGGAGGAGGTGGAGGGATAT+CGG + chr8.3:17487467-17487486 None:intergenic 55.0%
! GGCTCTTCTGGAGGGAAGTA+AGG + chr8.3:17487205-17487224 None:intergenic 55.0%
ACTCCTCCCTCACCAAAGGG+AGG - chr8.3:17487288-17487307 MS.gene48342:CDS 60.0%
AGTGAAGGTGGAGGAGGAGG+AGG - chr8.3:17487646-17487665 MS.gene48342:CDS 60.0%
CATCCTCCCTTTGGTGAGGG+AGG + chr8.3:17487294-17487313 None:intergenic 60.0%
GAAAGAGAGGCTGGAGGAGG+TGG + chr8.3:17487478-17487497 None:intergenic 60.0%
GAGGTGGAGGGATATCGGTG+AGG + chr8.3:17487462-17487481 None:intergenic 60.0%
GGCACAGAAAGAGAGGCTGG+AGG + chr8.3:17487484-17487503 None:intergenic 60.0%
AGAGAGGCTGGAGGAGGTGG+AGG + chr8.3:17487475-17487494 None:intergenic 65.0%
GAAGGTGGAGGAGGAGGAGG+AGG - chr8.3:17487649-17487668 MS.gene48342:CDS 65.0%
GAGAGGCTGGAGGAGGTGGA+GGG + chr8.3:17487474-17487493 None:intergenic 65.0%
GGTGGAGGAGGAGGAGGAGG+AGG - chr8.3:17487652-17487671 MS.gene48342:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 17487115 17487687 17487115 ID=MS.gene48342
chr8.3 mRNA 17487115 17487687 17487115 ID=MS.gene48342.t1;Parent=MS.gene48342
chr8.3 exon 17487115 17487687 17487115 ID=MS.gene48342.t1.exon1;Parent=MS.gene48342.t1
chr8.3 CDS 17487115 17487687 17487115 ID=cds.MS.gene48342.t1;Parent=MS.gene48342.t1
Gene Sequence

>MS.gene48342

ATGGCATCATCATCCAGCGCATACAATTCACCTTGTGCTGCCTGCAAATTCTTGAGGAGAAAATGCATGCCAGGTTGCATCTTTGCACCTTACTTCCCTCCAGAAGAGCCTCAAAAATTTGCAAACGTACACAAAATATTTGGTGCTAGCAATGTCACAAAGCTTCTCAACGAACTCCTCCCTCACCAAAGGGAGGATGCAGTTAACTCACTTGCTTACGAAGCCGAAGCACGAGTTAGGGATCCAGTTTATGGATGTGTAGGAGCCATCTCTTTTCTACAAAGACAAGTTCAAAGGCTTCAAAAGGAACTCGACGCTGCTAACACCGATCTTCTTCGCTATACCCTCACCGATATCCCTCCACCTCCTCCAGCCTCTCTTTCTGTGCCTCAAGGAATGATATCAGTCCAACCAATTCCACAAAGACAGTTTAGTGGAAGAAATGAAGGGCTTTATAGACAATCTCCTACTACTACTTATTCTTCTTTACCTTATTCTCTTCCTTGGACTGATACTTCCTCAGTGGATATGAGTGAAGGTGGAGGAGGAGGAGGAGGAGGAAATCATATGTGA
Protein sequence

>MS.gene48342.t1

MASSSSAYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANTDLLRYTLTDIPPPPPASLSVPQGMISVQPIPQRQFSGRNEGLYRQSPTTTYSSLPYSLPWTDTSSVDMSEGGGGGGGGNHM