AlfalfaGEDB | MS.gene48562

M. sativa cultivar XinJiangDaYe / MS.gene48562

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48562.t1	KEH21704.1	86.1	676	94	0	1	676	208	883	0.00E+00	1181

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48562.t1	Q9SCZ4	47.5	617	287	12	29	617	217	824	6.1e-147	522.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48562.t1	A0A072TW19	86.1	676	94	0	1	676	208	883	0.0e+00	1181.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene48562.t1	MTR_7g015230	86.095	676	94	0	1	676	208	883	1216
MS.gene48562.t1	MTR_7g015310	85.125	679	91	4	1	676	202	873	1193
MS.gene48562.t1	MTR_4g052290	75.691	687	154	4	1	676	201	885	1064
MS.gene48562.t1	MTR_7g015280	75.480	677	145	5	1	676	202	858	1038
MS.gene48562.t1	MTR_7g015320	72.740	697	148	5	1	676	203	878	1013
MS.gene48562.t1	MTR_7g015250	73.403	673	137	6	1	650	197	850	988
MS.gene48562.t1	MTR_7g015240	73.023	645	149	7	1	631	201	834	936
MS.gene48562.t1	MTR_7g015510	66.764	686	205	5	1	665	205	888	915
MS.gene48562.t1	MTR_7g015550	66.618	686	206	5	1	665	205	888	914
MS.gene48562.t1	MTR_7g015390	66.087	690	204	8	1	665	205	889	889

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48562.t1	AT3G51550	47.488	617	287	12	29	617	217	824	2.85e-178	531
MS.gene48562.t1	AT5G39000	47.030	606	279	15	26	606	211	799	8.74e-168	503
MS.gene48562.t1	AT5G38990	46.569	612	290	15	24	606	203	806	2.29e-163	492
MS.gene48562.t1	AT3G04690	44.518	602	286	13	35	606	210	793	2.19e-161	486
MS.gene48562.t1	AT5G28680	45.008	611	289	14	35	614	211	805	3.09e-159	481
MS.gene48562.t1	AT5G28680	45.008	611	289	14	35	614	211	805	3.09e-159	481
MS.gene48562.t1	AT1G30570	40.604	596	310	11	33	606	223	796	3.78e-134	415
MS.gene48562.t1	AT5G59700	42.044	597	302	14	26	606	190	758	3.36e-131	407
MS.gene48562.t1	AT4G39110	40.940	596	305	13	31	606	233	801	3.93e-130	405
MS.gene48562.t1	AT2G21480	41.472	598	299	14	31	606	232	800	1.11e-129	404

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Find 155 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGACTCTCCTCGTTACT+TGG	0.408002	7.2:+82689371	MS.gene48562:CDS
AAATAGTCGATCCATTCGTA+AGG	0.558462	7.2:+82690858	MS.gene48562:CDS
AAATCTGATGTGTACTCGTT+CGG	0.482628	7.2:+82690716	MS.gene48562:CDS
AACAATTGTTAGCACAAGGC+TGG	0.530821	7.2:-82689997	None:intergenic
AACAGCCTTTCTCTGGGATT+GGG	0.409947	7.2:+82691146	MS.gene48562:CDS
AACATTCCTGTATCCTTACT+TGG	0.435594	7.2:-82689336	None:intergenic
AACTACCCATGTCAGCACGA+TGG	0.701571	7.2:+82690634	MS.gene48562:CDS
AACTGCAAGAAGTTATGGAA+TGG	0.581022	7.2:+82689494	MS.gene48562:CDS
AAGAGAATTATAATGTGACA+TGG	0.639856	7.2:+82689523	MS.gene48562:CDS
AAGCCTCTGCTTCCACGATA+GGG	0.443172	7.2:-82690447	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAACAACAACAAAAGCTG+TGG	-	chr7.2:82689970-82689989	None:intergenic	30.0%
AATGATAATTTGAGTCACTG+AGG	-	chr7.2:82689218-82689237	None:intergenic	30.0%
ACATATTGTTGGATGACAAA+TGG	+	chr7.2:82690558-82690577	MS.gene48562:CDS	30.0%
ACTCTTTGTGAGTATCTTTA+TGG	+	chr7.2:82690410-82690429	MS.gene48562:CDS	30.0%
AGTGATAAAAATAATCTGGC+AGG	+	chr7.2:82689867-82689886	MS.gene48562:CDS	30.0%
ATCATCATCAAAGTTGTTTG+TGG	-	chr7.2:82690162-82690181	None:intergenic	30.0%
CATATTGTTGGATGACAAAT+GGG	+	chr7.2:82690559-82690578	MS.gene48562:CDS	30.0%
CTTCTTTCACTTATATGGTA+AGG	+	chr7.2:82689562-82689581	MS.gene48562:CDS	30.0%
CTTGAAACATTATTGCAAGT+TGG	+	chr7.2:82690901-82690920	MS.gene48562:CDS	30.0%
GTGAAAATGTACTCTCAAAA+TGG	+	chr7.2:82689732-82689751	MS.gene48562:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	82689189	82691219	82689189	ID=MS.gene48562
chr7.2	mRNA	82689189	82691219	82689189	ID=MS.gene48562.t1;Parent=MS.gene48562
chr7.2	exon	82689189	82691219	82689189	ID=MS.gene48562.t1.exon1;Parent=MS.gene48562.t1
chr7.2	CDS	82689189	82691219	82689189	ID=cds.MS.gene48562.t1;Parent=MS.gene48562.t1

Gene Sequence

>MS.gene48562

ATGCCTTCTTTTCTCTATTTCACAAACCTCAGTGACTCAAATTATCATTTGAAATCACCTGATATAGACGACACAGAATACCAAGTTCGTAACGACAAAGCTTTGGAGACGGTTTATAGAGTCAGTGTCGGTGGTAATCAAGTTCCACCAAGTAAGGATACAGGAATGTTTCGTGATTGGGAAAACGACTCTCCTCGTTACTTGGAGAAAAAATATCATCAAAGTGTATCAAGTGATTTTGGGGAGCATCTCAACTATAGAAGCAATGCCATTCCAAATTACACTGCACCAGAGGCTGTATACTTAACTGCAAGAAGTTATGGAATGGATGCCAAAGAGAATTATAATGTGACATGGAATTTTGAAGTTGATTCTTCTTTCACTTATATGGTAAGGTTACATTTTTGTGATTTTGATTGGCATATCAATAATCCAGGTGATAGAGTCTTTCAGATATTTATAGATGATATTTTGGCTGAACAATATGCTGATGTGATTAAATGGGCTGGTGCTCGTTTGGTTCCCGTTTATAGGGATTATGCTGTGAAAATGTACTCTCAAAATGGAAGCTCTGAAATTGAAAGACTTAACCTTTCAATCAAGCTACAACCAGCACCAGAAAGGATCAACACTAAATACCGTGATGTCATATTGAATGGAATCGAGATTTTCAAAATAAGTGATAAAAATAATCTGGCAGGGCAAATATCAAAATTCATTGAGCTATCTCCCCTGCATCAAGAATTTTCAACCCAATCGTCAAAAAAATTTAAGATCACCACAGCTTTTGTTGTTGTTATTGCAATTTCCAGCCTTGTGCTAACAATTGTTGCGGGTATCACTATTTTTTGGCTAAGGAGAAGGTTGCACAATGCCAGGGCAGATAATTCGTCGAAAACAAAGAACATAGAGTTATCATCTCTGCCGCCCCATTTGTGTCGCTACTTTACAATTGCAGAGATCAAAGCGGCCACAAACAACTTTGATGATGATGTCATCATCGGAGTTGGAGGGTTTGGCAACGTGTACAAAGGTTGTGTCGATGGATCCAAACTTGTTGCGATAAAACGCCTTAAATCAGGCTCTCAACAAGGTGCCAACGAGTTCATAAACGAGATCGAGTTGCTCTCCCAACTTCGCCACATTCACTTGGTGTCCCTTGTGGGATATTGCAACGATGACACAGAGATGATTCTGGTTTATGAGTTCATGCAGCACGGTACTCTTTGTGAGTATCTTTATGGTTCTAATAAGCAGCCCCTATCGTGGAAGCAGAGGCTTGAGATTCTTTTGGGTGCAGCGAGAGGGCTGAATTATCTTCATACTGAGGTGAAACAGAAGATAATACACCGCGACGTGAAGAGCACCAACATATTGTTGGATGACAAATGGGTGGCTAAGGTTTCCGACTTTGGGTTATCCAAGGTGGGACCGACAGGGATATCAACTACCCATGTCAGCACGATGGTGAAGGGGAGCCTCGGATATTTGGATCCCGAATATTATATGCTCCAAAGGCTAACACTAAAATCTGATGTGTACTCGTTCGGTGTGGTGCTTCTTGAGGTGTTGTGTGCTAGACCACCTTTGGTTCGTGATTTGGATAAGAATACGGCTAGTCTAGTTTGTTGGTTTAAAAAATGTTACGATGAAGGTGTGTCAATTGCACAAATAGTCGATCCATTCGTAAGGGATTCTATCACAGATGAGTGCTTGAAACATTATTGCAAGTTGGCGTTAAGTTGTTTGCATGATGATGGGACTCAACGACCCTCAATGAGTCAAGTGGTTGGGGGTTTAGAGTTTGCATTGCAATTGGTAGTGAGTGAAGAAGATAGCCAATTTGGTATGACCCAAAAAGATAGGACATGTATGAGTGATGAATGGAGTGACCTGCATTTCACGAGATCGCACACCTACAAGGAGAGCACAGTATCAGCGAGGCTAGGTGCTCGAGAACAGCCTTTCTCTGGGATTGGGAATCAAAGAACACGGTCGTACTCATGTCAAAACTTCAAAATTTATATTTAA

Protein sequence

>MS.gene48562.t1

MPSFLYFTNLSDSNYHLKSPDIDDTEYQVRNDKALETVYRVSVGGNQVPPSKDTGMFRDWENDSPRYLEKKYHQSVSSDFGEHLNYRSNAIPNYTAPEAVYLTARSYGMDAKENYNVTWNFEVDSSFTYMVRLHFCDFDWHINNPGDRVFQIFIDDILAEQYADVIKWAGARLVPVYRDYAVKMYSQNGSSEIERLNLSIKLQPAPERINTKYRDVILNGIEIFKISDKNNLAGQISKFIELSPLHQEFSTQSSKKFKITTAFVVVIAISSLVLTIVAGITIFWLRRRLHNARADNSSKTKNIELSSLPPHLCRYFTIAEIKAATNNFDDDVIIGVGGFGNVYKGCVDGSKLVAIKRLKSGSQQGANEFINEIELLSQLRHIHLVSLVGYCNDDTEMILVYEFMQHGTLCEYLYGSNKQPLSWKQRLEILLGAARGLNYLHTEVKQKIIHRDVKSTNILLDDKWVAKVSDFGLSKVGPTGISTTHVSTMVKGSLGYLDPEYYMLQRLTLKSDVYSFGVVLLEVLCARPPLVRDLDKNTASLVCWFKKCYDEGVSIAQIVDPFVRDSITDECLKHYCKLALSCLHDDGTQRPSMSQVVGGLEFALQLVVSEEDSQFGMTQKDRTCMSDEWSDLHFTRSHTYKESTVSARLGAREQPFSGIGNQRTRSYSCQNFKIYI