Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48713.t1 | XP_003605494.2 | 47.4 | 232 | 81 | 6 | 4 | 198 | 3 | 230 | 1.70E-35 | 159.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48713.t1 | Q9FJK3 | 52.6 | 76 | 32 | 1 | 4 | 79 | 3 | 74 | 6.4e-12 | 72.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48713.t1 | G7JN54 | 47.4 | 232 | 81 | 6 | 4 | 198 | 3 | 230 | 1.2e-35 | 159.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene48713.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48713.t1 | MTR_4g032290 | 47.845 | 232 | 80 | 8 | 4 | 198 | 3 | 230 | 8.42e-38 | 130 |
| MS.gene48713.t1 | MTR_4g031910 | 45.217 | 230 | 87 | 7 | 4 | 198 | 3 | 228 | 1.46e-37 | 130 |
| MS.gene48713.t1 | MTR_8g036130 | 38.000 | 250 | 94 | 13 | 4 | 198 | 3 | 246 | 1.48e-29 | 110 |
| MS.gene48713.t1 | MTR_4g032270 | 45.600 | 125 | 40 | 4 | 93 | 198 | 15 | 130 | 1.69e-24 | 93.6 |
| MS.gene48713.t1 | MTR_4g032620 | 33.471 | 242 | 105 | 10 | 1 | 198 | 1 | 230 | 4.03e-24 | 95.5 |
| MS.gene48713.t1 | MTR_1g090783 | 72.917 | 48 | 12 | 1 | 4 | 50 | 2 | 49 | 2.17e-15 | 70.5 |
| MS.gene48713.t1 | MTR_5g047580 | 72.917 | 48 | 12 | 1 | 4 | 50 | 3 | 50 | 5.98e-15 | 69.3 |
| MS.gene48713.t1 | MTR_1g077390 | 68.750 | 48 | 14 | 1 | 4 | 50 | 3 | 50 | 1.79e-14 | 68.2 |
| MS.gene48713.t1 | MTR_1g007990 | 69.565 | 46 | 14 | 0 | 41 | 86 | 912 | 957 | 2.85e-14 | 70.9 |
| MS.gene48713.t1 | MTR_3g466830 | 71.111 | 45 | 13 | 0 | 4 | 48 | 2 | 46 | 3.14e-14 | 67.8 |
| MS.gene48713.t1 | MTR_4g028800 | 76.744 | 43 | 8 | 1 | 6 | 48 | 5 | 45 | 5.52e-14 | 64.7 |
| MS.gene48713.t1 | MTR_2g016210 | 34.921 | 126 | 66 | 4 | 6 | 125 | 5 | 120 | 9.30e-14 | 67.8 |
| MS.gene48713.t1 | MTR_3g466890 | 71.111 | 45 | 13 | 0 | 4 | 48 | 2 | 46 | 1.36e-13 | 65.9 |
| MS.gene48713.t1 | MTR_1g090697 | 50.704 | 71 | 31 | 1 | 4 | 74 | 3 | 69 | 1.41e-13 | 65.9 |
| MS.gene48713.t1 | MTR_3g466980 | 64.444 | 45 | 16 | 0 | 4 | 48 | 3 | 47 | 2.53e-13 | 66.2 |
| MS.gene48713.t1 | MTR_5g075380 | 65.116 | 43 | 15 | 0 | 6 | 48 | 5 | 47 | 2.73e-12 | 62.4 |
| MS.gene48713.t1 | MTR_4g063790 | 54.348 | 46 | 21 | 0 | 4 | 49 | 3 | 48 | 8.11e-12 | 61.2 |
| MS.gene48713.t1 | MTR_1g090710 | 63.265 | 49 | 17 | 1 | 1 | 49 | 1 | 48 | 1.09e-11 | 60.8 |
| MS.gene48713.t1 | MTR_2g035610 | 82.222 | 45 | 8 | 0 | 4 | 48 | 3 | 47 | 1.62e-11 | 59.3 |
| MS.gene48713.t1 | MTR_3g031240 | 40.506 | 79 | 42 | 2 | 1 | 79 | 1 | 74 | 3.14e-11 | 60.1 |
| MS.gene48713.t1 | MTR_3g065100 | 31.818 | 242 | 108 | 10 | 4 | 195 | 3 | 237 | 6.05e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48713.t1 | AT3G05860 | 47.887 | 71 | 33 | 1 | 4 | 74 | 3 | 69 | 6.20e-14 | 67.8 |
| MS.gene48713.t1 | AT3G05860 | 47.887 | 71 | 33 | 1 | 4 | 74 | 3 | 69 | 7.66e-14 | 68.2 |
| MS.gene48713.t1 | AT3G05860 | 47.887 | 71 | 33 | 1 | 4 | 74 | 3 | 69 | 8.41e-14 | 68.2 |
| MS.gene48713.t1 | AT1G65330 | 55.556 | 45 | 20 | 0 | 4 | 48 | 2 | 46 | 4.57e-11 | 60.8 |
Find 48 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTGGTGAGGTCAATTC+TGG | 0.248303 | 4.4:-72038653 | MS.gene48713:CDS |
| TACCTTCAACGTAATAATTC+AGG | 0.297233 | 4.4:+72038623 | None:intergenic |
| GACCATAATTTGAAGGATAT+TGG | 0.307693 | 4.4:-72038851 | MS.gene48713:intron |
| GTGAGGTCAATTCTGGAGTT+TGG | 0.312335 | 4.4:-72038646 | MS.gene48713:CDS |
| TTCAACATTTCCGTAGCTTC+TGG | 0.330276 | 4.4:+72039734 | None:intergenic |
| CACGGTCTCTTGCACATTAC+CGG | 0.334927 | 4.4:+72038676 | None:intergenic |
| TATGCAAACTCAATTATTGA+TGG | 0.339241 | 4.4:-72038711 | MS.gene48713:CDS |
| TACTACTGAAGATTGATAAA+AGG | 0.348888 | 4.4:-72039688 | MS.gene48713:intron |
| CACCAAGTCTAGTAGCATTT+AGG | 0.356640 | 4.4:-72038751 | MS.gene48713:CDS |
| GAAGAAGAGTCTATTCAAAA+AGG | 0.366702 | 4.4:-72039959 | MS.gene48713:CDS |
| GTTCATTGAGCTTAGAGCTT+TGG | 0.378545 | 4.4:-72039482 | MS.gene48713:intron |
| CCGCCATTTCGAGGTGAACT+TGG | 0.410693 | 4.4:+72038786 | None:intergenic |
| GAAGGATATTGGTAGACGTT+TGG | 0.415968 | 4.4:-72038840 | MS.gene48713:intron |
| GGCCTGAATTATTACGTTGA+AGG | 0.447302 | 4.4:-72038625 | None:intergenic |
| GGAAAGCAACATACAAGAAA+AGG | 0.449202 | 4.4:-72039981 | MS.gene48713:CDS |
| AGCATTTAGGAGTGAAGAAA+TGG | 0.450016 | 4.4:-72038738 | MS.gene48713:CDS |
| GGTAGACGTTTGGAAGTGTT+TGG | 0.463590 | 4.4:-72038830 | MS.gene48713:CDS |
| AACCTTACTTCTTCTACCCA+TGG | 0.464315 | 4.4:+72040035 | None:intergenic |
| TCAATTATTGATGGACTCAA+TGG | 0.468362 | 4.4:-72038702 | MS.gene48713:CDS |
| CTCCTAAATGCTACTAGACT+TGG | 0.472072 | 4.4:+72038749 | None:intergenic |
| GTATTGTTGCCGCCATTTCG+AGG | 0.476909 | 4.4:+72038777 | None:intergenic |
| AAACCAAGTTCACCTCGAAA+TGG | 0.486349 | 4.4:-72038789 | MS.gene48713:CDS |
| GTGAGGAATATAACAAGTAT+TGG | 0.490106 | 4.4:-72039395 | MS.gene48713:CDS |
| AACCATGGGTAGAAGAAGTA+AGG | 0.494160 | 4.4:-72040037 | None:intergenic |
| TAGCTCCCTATGTGGTATTG+AGG | 0.500333 | 4.4:-72039926 | MS.gene48713:CDS |
| CCAGAATTGACCTCACCAAA+TGG | 0.504570 | 4.4:+72038653 | None:intergenic |
| GTGCAAGAGACCGTGCCATT+TGG | 0.506677 | 4.4:-72038668 | MS.gene48713:CDS |
| AGCAGCATCATTGACAATGA+AGG | 0.509472 | 4.4:+72040005 | None:intergenic |
| CAAGTATTGGTTACTGCTCT+CGG | 0.517188 | 4.4:-72039382 | MS.gene48713:intron |
| ACAAGCCTCAATACCACATA+GGG | 0.552522 | 4.4:+72039921 | None:intergenic |
| GGATATACCTCCAGAAGCTA+CGG | 0.555348 | 4.4:-72039744 | MS.gene48713:CDS |
| CTAAATGCTACTAGACTTGG+TGG | 0.560540 | 4.4:+72038752 | None:intergenic |
| GTGCTATCATGTGGAGAAAG+TGG | 0.568553 | 4.4:-72039454 | MS.gene48713:CDS |
| CCACAAGGAAAATATATGCA+AGG | 0.593677 | 4.4:+72039776 | None:intergenic |
| AACATTTCCGTAGCTTCTGG+AGG | 0.594319 | 4.4:+72039737 | None:intergenic |
| TTGATGGACTCAATGGTGGC+CGG | 0.600080 | 4.4:-72038695 | MS.gene48713:CDS |
| TCATTGTCAATGATGCTGCT+AGG | 0.603132 | 4.4:-72040002 | MS.gene48713:CDS |
| GTTGAACTTAGCTCCCTATG+TGG | 0.607749 | 4.4:-72039934 | MS.gene48713:CDS |
| CACAAGCCTCAATACCACAT+AGG | 0.610836 | 4.4:+72039920 | None:intergenic |
| CCAAGTTCACCTCGAAATGG+CGG | 0.611559 | 4.4:-72038786 | MS.gene48713:CDS |
| ATATCCTTCTTGTTCCCACA+AGG | 0.614886 | 4.4:+72039761 | None:intergenic |
| CCGGCGTTCAATGACTTGTG+AGG | 0.617762 | 4.4:-72039412 | MS.gene48713:CDS |
| ATTATTGATGGACTCAATGG+TGG | 0.626977 | 4.4:-72038699 | MS.gene48713:CDS |
| AGAGACCGTGCCATTTGGTG+AGG | 0.639188 | 4.4:-72038663 | MS.gene48713:CDS |
| ATTGACCTCACCAAATGGCA+CGG | 0.665042 | 4.4:+72038658 | None:intergenic |
| AATGCTACTAGACTTGGTGG+TGG | 0.667608 | 4.4:+72038755 | None:intergenic |
| CCTCACAAGTCATTGAACGC+CGG | 0.672396 | 4.4:+72039412 | None:intergenic |
| TTGGATAGTGTGCTATCATG+TGG | 0.682072 | 4.4:-72039463 | MS.gene48713:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCGTATTTGTATTATGTAT+AGG | - | chr4.4:72038817-72038836 | MS.gene48713:CDS | 20.0% |
| ! | AATTTCCTAAATTCTAGCAT+AGG | - | chr4.4:72039459-72039478 | MS.gene48713:CDS | 25.0% |
| ! | TAACTACTGAAGATTGAAAA+AGG | + | chr4.4:72039622-72039641 | None:intergenic | 25.0% |
| ! | TACCAATATCCTTCAAATTA+TGG | + | chr4.4:72039815-72039834 | None:intergenic | 25.0% |
| ! | TACTACTGAAGATTGATAAA+AGG | - | chr4.4:72038973-72038992 | MS.gene48713:intron | 25.0% |
| ! | TAGAAAACAGAATAGTTAGA+TGG | - | chr4.4:72039734-72039753 | MS.gene48713:CDS | 25.0% |
| ! | TAGAAAACAGAATAGTTAGA+TGG | + | chr4.4:72039753-72039734 | None:intergenic | 25.0% |
| ! | TATGCAAACTCAATTATTGA+TGG | - | chr4.4:72039950-72039969 | MS.gene48713:CDS | 25.0% |
| !! | ATCTAACTATTCTGTTTTCT+AGG | - | chr4.4:72038859-72038878 | MS.gene48713:intron | 25.0% |
| !! | ATCTAACTATTCTGTTTTCT+AGG | + | chr4.4:72038878-72038859 | None:intergenic | 25.0% |
| !!! | AAGGATTTGAGTTATTTTCT+TGG | - | chr4.4:72039781-72039800 | MS.gene48713:CDS | 25.0% |
| AGAAATGCATAACTCTCATA+AGG | + | chr4.4:72038781-72038800 | None:intergenic | 30.0% | |
| GAAATGCATAACTCTCATAA+GGG | + | chr4.4:72038780-72038799 | None:intergenic | 30.0% | |
| GAAGAAGAGTCTATTCAAAA+AGG | - | chr4.4:72038702-72038721 | MS.gene48713:CDS | 30.0% | |
| GACCATAATTTGAAGGATAT+TGG | - | chr4.4:72039810-72039829 | MS.gene48713:intron | 30.0% | |
| GTGAGGAATATAACAAGTAT+TGG | - | chr4.4:72039266-72039285 | MS.gene48713:intron | 30.0% | |
| TAACTCAAATCCTCTAAGTT+TGG | - | chr4.4:72039758-72039777 | MS.gene48713:CDS | 30.0% | |
| TGACTTGAGAGGAATATAAT+AGG | + | chr4.4:72039333-72039352 | None:intergenic | 30.0% | |
| ! | CTTGCATATATTTTCCTTGT+GGG | - | chr4.4:72038886-72038905 | MS.gene48713:intron | 30.0% |
| ! | CTTGCATATATTTTCCTTGT+GGG | + | chr4.4:72038905-72038886 | None:intergenic | 30.0% |
| ! | GAGAGGAATATAATAGGTTT+TGG | + | chr4.4:72039327-72039346 | None:intergenic | 30.0% |
| !! | TCAATTATTGATGGACTCAA+TGG | - | chr4.4:72039959-72039978 | MS.gene48713:CDS | 30.0% |
| !! | TTTGATAGTGTGTTATCATG+TGG | + | chr4.4:72039395-72039414 | None:intergenic | 30.0% |
| AGATACAACAATGAAGCCTT+TGG | + | chr4.4:72039521-72039540 | None:intergenic | 35.0% | |
| AGCATTTAGGAGTGAAGAAA+TGG | - | chr4.4:72039923-72039942 | MS.gene48713:CDS | 35.0% | |
| CAATCTTCTAAGTCTAGCAT+AGG | + | chr4.4:72039135-72039154 | None:intergenic | 35.0% | |
| CCACAAGGAAAATATATGCA+AGG | - | chr4.4:72039706-72039725 | MS.gene48713:CDS | 35.0% | |
| CCACAAGGAAAATATATGCA+AGG | + | chr4.4:72039725-72039706 | None:intergenic | 35.0% | |
| GCTGATTGACCATAATTTGA+AGG | - | chr4.4:72039803-72039822 | MS.gene48713:intron | 35.0% | |
| GGAAAGCAACATACAAGAAA+AGG | - | chr4.4:72038680-72038699 | MS.gene48713:CDS | 35.0% | |
| GTTACCAAAATCCAGAGATT+GGG | + | chr4.4:72039488-72039507 | None:intergenic | 35.0% | |
| TCAAATCCTCTAAGTTTGGA+AGG | - | chr4.4:72039762-72039781 | MS.gene48713:CDS | 35.0% | |
| TCAAATCCTTCCAAACTTAG+AGG | + | chr4.4:72039771-72039790 | None:intergenic | 35.0% | |
| TGTTACCAAAATCCAGAGAT+TGG | + | chr4.4:72039489-72039508 | None:intergenic | 35.0% | |
| TTCAACATTTCCGTATCTTC+TGG | - | chr4.4:72039664-72039683 | MS.gene48713:intron | 35.0% | |
| ! | CCTTGCATATATTTTCCTTG+TGG | - | chr4.4:72038885-72038904 | MS.gene48713:intron | 35.0% |
| ! | CCTTGCATATATTTTCCTTG+TGG | + | chr4.4:72038904-72038885 | None:intergenic | 35.0% |
| !! | ATTATTGATGGACTCAATGG+TGG | - | chr4.4:72039962-72039981 | MS.gene48713:CDS | 35.0% |
| AAACCAAGTTCACCTCGAAA+TGG | - | chr4.4:72039872-72039891 | MS.gene48713:intron | 40.0% | |
| AACATTTCCGTATCTTCTGG+AGG | - | chr4.4:72039667-72039686 | MS.gene48713:intron | 40.0% | |
| ACAAGCCTCAATACCACATA+GGG | + | chr4.4:72038743-72038762 | None:intergenic | 40.0% | |
| ACTGCTCTCGGTATAGTTAA+CGG | - | chr4.4:72039291-72039310 | MS.gene48713:intron | 40.0% | |
| AGATACAACGATGAAGCCTT+TGG | - | chr4.4:72039074-72039093 | MS.gene48713:intron | 40.0% | |
| AGCAGCATCATTGACAATGA+AGG | + | chr4.4:72038659-72038678 | None:intergenic | 40.0% | |
| ATATCCATCTTGTTCCCACA+AGG | - | chr4.4:72039691-72039710 | MS.gene48713:CDS | 40.0% | |
| ATATCCTTCTTGTTCCCACA+AGG | + | chr4.4:72038903-72038922 | None:intergenic | 40.0% | |
| CACCAAGTCTAGTAGCATTT+AGG | - | chr4.4:72039910-72039929 | MS.gene48713:intron | 40.0% | |
| CTAAATGCTACTAGACTTGG+TGG | + | chr4.4:72039912-72039931 | None:intergenic | 40.0% | |
| CTCCTAAATGCTACTAGACT+TGG | + | chr4.4:72039915-72039934 | None:intergenic | 40.0% | |
| GAAGGATATTGGTAGACGTT+TGG | - | chr4.4:72039821-72039840 | MS.gene48713:intron | 40.0% | |
| GGACACCTATGCTAGAATTT+AGG | + | chr4.4:72039467-72039486 | None:intergenic | 40.0% | |
| GGATATTCCTCCAGAAGATA+CGG | + | chr4.4:72039677-72039696 | None:intergenic | 40.0% | |
| GTGTTATCATGTGGAGAAAG+TGG | + | chr4.4:72039386-72039405 | None:intergenic | 40.0% | |
| GTTCATTGAGCTTAGAGCTT+TGG | - | chr4.4:72039179-72039198 | MS.gene48713:intron | 40.0% | |
| TCATTGTCAATGATGCTGCT+AGG | - | chr4.4:72038659-72038678 | MS.gene48713:CDS | 40.0% | |
| TGGTACAGAATCCAGAGATT+GGG | - | chr4.4:72039106-72039125 | MS.gene48713:intron | 40.0% | |
| TTCAACATTTCCGTAGCTTC+TGG | + | chr4.4:72038930-72038949 | None:intergenic | 40.0% | |
| TTGGATAGTGTGCTATCATG+TGG | - | chr4.4:72039198-72039217 | MS.gene48713:intron | 40.0% | |
| TTGGTACAGAATCCAGAGAT+TGG | - | chr4.4:72039105-72039124 | MS.gene48713:intron | 40.0% | |
| ! | TGTGGAGAAAGTGGAGTTTT+TGG | - | chr4.4:72039216-72039235 | MS.gene48713:intron | 40.0% |
| ! | TGTGGAGAAAGTGGAGTTTT+TGG | + | chr4.4:72039235-72039216 | None:intergenic | 40.0% |
| ! | TTTTCCTTGTGGGAACAAGA+AGG | - | chr4.4:72038896-72038915 | MS.gene48713:intron | 40.0% |
| ! | TTTTCCTTGTGGGAACAAGA+TGG | + | chr4.4:72038915-72038896 | None:intergenic | 40.0% |
| !! | CAAGTATTGGTTACTGCTCT+CGG | - | chr4.4:72039279-72039298 | MS.gene48713:intron | 40.0% |
| !! | GGATTTTGGTAACAATGCCT+CGG | - | chr4.4:72039495-72039514 | MS.gene48713:intron | 40.0% |
| AACATTTCCGTAGCTTCTGG+AGG | + | chr4.4:72038927-72038946 | None:intergenic | 45.0% | |
| ATTGACCTCACCAAATGGCA+CGG | + | chr4.4:72040006-72040025 | None:intergenic | 45.0% | |
| CACAAGCCTCAATACCACAT+AGG | + | chr4.4:72038744-72038763 | None:intergenic | 45.0% | |
| CCAGAATTGACCTCACCAAA+TGG | + | chr4.4:72040011-72040030 | None:intergenic | 45.0% | |
| CTCATAAGGGCCATACACTA+TGG | + | chr4.4:72038767-72038786 | None:intergenic | 45.0% | |
| GGATATACCTCCAGAAGCTA+CGG | - | chr4.4:72038917-72038936 | MS.gene48713:intron | 45.0% | |
| GTGCTATCATGTGGAGAAAG+TGG | - | chr4.4:72039207-72039226 | MS.gene48713:intron | 45.0% | |
| GTTGAACTTAGCTCCCTATG+TGG | - | chr4.4:72038727-72038746 | MS.gene48713:CDS | 45.0% | |
| TAGCTCCCTATGTGGTATTG+AGG | - | chr4.4:72038735-72038754 | MS.gene48713:CDS | 45.0% | |
| TGGATTCTGTACCAATGCCT+CGG | + | chr4.4:72039100-72039119 | None:intergenic | 45.0% | |
| ! | CCATTTGGTGAGGTCAATTC+TGG | - | chr4.4:72040008-72040027 | MS.gene48713:CDS | 45.0% |
| ! | GTGTCCCAATCTCTGGATTT+TGG | - | chr4.4:72039481-72039500 | MS.gene48713:intron | 45.0% |
| !! | AATGCTACTAGACTTGGTGG+TGG | + | chr4.4:72039909-72039928 | None:intergenic | 45.0% |
| !! | GGAGAAAGTGGAGTTTTTGG+TGG | - | chr4.4:72039219-72039238 | MS.gene48713:intron | 45.0% |
| !! | GGAGAAAGTGGAGTTTTTGG+TGG | + | chr4.4:72039238-72039219 | None:intergenic | 45.0% |
| !! | GGTAGACGTTTGGAAGTGTT+TGG | - | chr4.4:72039831-72039850 | MS.gene48713:intron | 45.0% |
| !! | GTGAGGTCAATTCTGGAGTT+TGG | - | chr4.4:72040015-72040034 | MS.gene48713:CDS | 45.0% |
| !!! | AGTTTTTGGTGGCATGTTGC+CGG | - | chr4.4:72039230-72039249 | MS.gene48713:intron | 45.0% |
| AACAATGAAGCCTTTGGCCG+AGG | + | chr4.4:72039515-72039534 | None:intergenic | 50.0% | |
| AGCATAGGTGTCCCAATCTC+TGG | - | chr4.4:72039474-72039493 | MS.gene48713:CDS | 50.0% | |
| AGCATAGGTGTCCCAATCTC+TGG | + | chr4.4:72039493-72039474 | None:intergenic | 50.0% | |
| CACGGTCTCTTGCACATTAC+CGG | + | chr4.4:72039988-72040007 | None:intergenic | 50.0% | |
| CCAAGTTCACCTCGAAATGG+CGG | - | chr4.4:72039875-72039894 | MS.gene48713:intron | 50.0% | |
| CCTCACAAGTCATTGAACGC+CGG | + | chr4.4:72039252-72039271 | None:intergenic | 50.0% | |
| CCTCTCAAGTCATTGAACGC+CGG | - | chr4.4:72039341-72039360 | MS.gene48713:intron | 50.0% | |
| GAGGCTTGTGCCATAGTGTA+TGG | - | chr4.4:72038754-72038773 | MS.gene48713:CDS | 50.0% | |
| GTATTGTTGCCGCCATTTCG+AGG | + | chr4.4:72039887-72039906 | None:intergenic | 50.0% | |
| !! | TTGATGGACTCAATGGTGGC+CGG | - | chr4.4:72039966-72039985 | MS.gene48713:CDS | 50.0% |
| AACGATGAAGCCTTTGGCCG+AGG | - | chr4.4:72039080-72039099 | MS.gene48713:intron | 55.0% | |
| CCGCCATTTCGAGGTGAACT+TGG | + | chr4.4:72039878-72039897 | None:intergenic | 55.0% | |
| CCGGCGTTCAATGACTTGAG+AGG | + | chr4.4:72039344-72039363 | None:intergenic | 55.0% | |
| GGTAACAATGCCTCGGCCAA+AGG | - | chr4.4:72039502-72039521 | MS.gene48713:intron | 55.0% | |
| TGTACCAATGCCTCGGCCAA+AGG | + | chr4.4:72039093-72039112 | None:intergenic | 55.0% | |
| ! | CCGGCGTTCAATGACTTGTG+AGG | - | chr4.4:72039249-72039268 | MS.gene48713:intron | 55.0% |
| ! | GTGCAAGAGACCGTGCCATT+TGG | - | chr4.4:72039993-72040012 | MS.gene48713:CDS | 55.0% |
| !! | AGAGACCGTGCCATTTGGTG+AGG | - | chr4.4:72039998-72040017 | MS.gene48713:CDS | 55.0% |
| !!! | AGTTTTTGGTGGCCTGTGGC+CGG | + | chr4.4:72039363-72039382 | None:intergenic | 55.0% |
| !!! | GTGGAGTTTTTGGTGGCCTG+TGG | + | chr4.4:72039367-72039386 | None:intergenic | 55.0% |
| AGTCATTGAACGCCGGCCAC+AGG | - | chr4.4:72039348-72039367 | MS.gene48713:intron | 60.0% | |
| GAAGCCTTTGGCCGAGGCAT+TGG | - | chr4.4:72039086-72039105 | MS.gene48713:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 72038628 | 72040055 | 72038628 | ID=MS.gene48713 |
| chr4.4 | mRNA | 72038628 | 72040055 | 72038628 | ID=MS.gene48713.t1;Parent=MS.gene48713 |
| chr4.4 | exon | 72039913 | 72040055 | 72039913 | ID=MS.gene48713.t1.exon1;Parent=MS.gene48713.t1 |
| chr4.4 | CDS | 72039913 | 72040055 | 72039913 | ID=cds.MS.gene48713.t1;Parent=MS.gene48713.t1 |
| chr4.4 | exon | 72039689 | 72039802 | 72039689 | ID=MS.gene48713.t1.exon2;Parent=MS.gene48713.t1 |
| chr4.4 | CDS | 72039689 | 72039802 | 72039689 | ID=cds.MS.gene48713.t1;Parent=MS.gene48713.t1 |
| chr4.4 | exon | 72039383 | 72039494 | 72039383 | ID=MS.gene48713.t1.exon3;Parent=MS.gene48713.t1 |
| chr4.4 | CDS | 72039383 | 72039494 | 72039383 | ID=cds.MS.gene48713.t1;Parent=MS.gene48713.t1 |
| chr4.4 | exon | 72038628 | 72038858 | 72038628 | ID=MS.gene48713.t1.exon4;Parent=MS.gene48713.t1 |
| chr4.4 | CDS | 72038628 | 72038858 | 72038628 | ID=cds.MS.gene48713.t1;Parent=MS.gene48713.t1 |
| Gene Sequence |
| Protein sequence |
