Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48714.t1 | XP_003605494.2 | 81 | 242 | 33 | 1 | 4 | 245 | 3 | 231 | 5.60E-102 | 380.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48714.t1 | Q9FJK3 | 47.7 | 193 | 99 | 2 | 4 | 196 | 3 | 193 | 1.3e-38 | 161.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48714.t1 | G7JN54 | 81.0 | 242 | 33 | 1 | 4 | 245 | 3 | 231 | 4.1e-102 | 380.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene48714.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48714.t1 | MTR_4g031910 | 83.471 | 242 | 25 | 1 | 4 | 245 | 3 | 229 | 1.31e-138 | 388 |
MS.gene48714.t1 | MTR_4g032290 | 80.992 | 242 | 33 | 1 | 4 | 245 | 3 | 231 | 6.16e-133 | 374 |
MS.gene48714.t1 | MTR_8g036130 | 61.753 | 251 | 81 | 5 | 4 | 245 | 3 | 247 | 1.02e-98 | 288 |
MS.gene48714.t1 | MTR_4g032620 | 58.367 | 245 | 88 | 4 | 1 | 245 | 1 | 231 | 1.40e-94 | 277 |
MS.gene48714.t1 | MTR_4g032260 | 81.818 | 154 | 28 | 0 | 4 | 157 | 3 | 156 | 4.74e-82 | 243 |
MS.gene48714.t1 | MTR_3g065100 | 48.548 | 241 | 117 | 4 | 4 | 242 | 3 | 238 | 1.86e-64 | 201 |
MS.gene48714.t1 | MTR_3g466980 | 54.902 | 153 | 68 | 1 | 4 | 156 | 3 | 154 | 8.85e-59 | 186 |
MS.gene48714.t1 | MTR_4g032270 | 57.616 | 151 | 43 | 2 | 95 | 245 | 2 | 131 | 3.42e-53 | 168 |
MS.gene48714.t1 | MTR_2g035610 | 73.333 | 120 | 32 | 0 | 4 | 123 | 3 | 122 | 1.34e-50 | 161 |
MS.gene48714.t1 | MTR_3g466830 | 44.720 | 161 | 88 | 1 | 4 | 164 | 2 | 161 | 2.04e-44 | 147 |
MS.gene48714.t1 | MTR_5g075380 | 45.333 | 150 | 81 | 1 | 6 | 155 | 5 | 153 | 1.25e-42 | 142 |
MS.gene48714.t1 | MTR_4g063790 | 41.104 | 163 | 96 | 0 | 4 | 166 | 3 | 165 | 3.86e-42 | 141 |
MS.gene48714.t1 | MTR_3g466890 | 42.138 | 159 | 91 | 1 | 4 | 162 | 2 | 159 | 6.02e-40 | 135 |
MS.gene48714.t1 | MTR_3g031100 | 42.038 | 157 | 90 | 1 | 1 | 157 | 1 | 156 | 4.54e-39 | 136 |
MS.gene48714.t1 | MTR_5g047580 | 44.805 | 154 | 83 | 2 | 4 | 157 | 3 | 154 | 4.80e-39 | 133 |
MS.gene48714.t1 | MTR_2g016210 | 41.447 | 152 | 89 | 0 | 6 | 157 | 5 | 156 | 1.18e-38 | 135 |
MS.gene48714.t1 | MTR_3g467080 | 40.260 | 154 | 92 | 0 | 4 | 157 | 3 | 156 | 3.03e-38 | 131 |
MS.gene48714.t1 | MTR_1g077390 | 40.909 | 154 | 89 | 2 | 4 | 157 | 3 | 154 | 9.07e-35 | 122 |
MS.gene48714.t1 | MTR_1g090783 | 39.610 | 154 | 91 | 2 | 4 | 157 | 2 | 153 | 1.54e-34 | 121 |
MS.gene48714.t1 | MTR_1g090710 | 39.623 | 159 | 94 | 2 | 1 | 159 | 1 | 157 | 3.16e-34 | 120 |
MS.gene48714.t1 | MTR_1g090697 | 39.744 | 156 | 92 | 2 | 4 | 159 | 3 | 156 | 8.25e-34 | 119 |
MS.gene48714.t1 | MTR_3g465410 | 40.146 | 137 | 82 | 0 | 30 | 166 | 1 | 137 | 5.09e-33 | 117 |
MS.gene48714.t1 | MTR_1g077320 | 42.857 | 154 | 86 | 2 | 4 | 157 | 3 | 154 | 3.11e-32 | 115 |
MS.gene48714.t1 | MTR_7g011950 | 42.857 | 154 | 86 | 2 | 4 | 157 | 3 | 154 | 3.17e-32 | 115 |
MS.gene48714.t1 | MTR_1g084950 | 43.506 | 154 | 85 | 2 | 4 | 157 | 3 | 154 | 4.11e-32 | 115 |
MS.gene48714.t1 | MTR_4g028720 | 41.558 | 154 | 88 | 2 | 4 | 157 | 3 | 154 | 1.25e-30 | 111 |
MS.gene48714.t1 | MTR_4g028800 | 78.788 | 66 | 12 | 1 | 6 | 71 | 5 | 68 | 1.29e-30 | 108 |
MS.gene48714.t1 | MTR_1g077300 | 42.857 | 154 | 84 | 2 | 4 | 157 | 3 | 152 | 2.94e-29 | 108 |
MS.gene48714.t1 | MTR_3g466900 | 38.462 | 130 | 79 | 1 | 33 | 162 | 2 | 130 | 4.39e-29 | 107 |
MS.gene48714.t1 | MTR_3g031240 | 33.333 | 159 | 105 | 1 | 1 | 159 | 1 | 158 | 6.15e-29 | 108 |
MS.gene48714.t1 | MTR_7g055800 | 50.427 | 117 | 30 | 2 | 4 | 120 | 3 | 91 | 1.90e-28 | 103 |
MS.gene48714.t1 | MTR_3g466930 | 36.154 | 130 | 82 | 1 | 33 | 162 | 2 | 130 | 6.84e-27 | 101 |
MS.gene48714.t1 | MTR_4g019670 | 39.103 | 156 | 79 | 2 | 3 | 158 | 5 | 144 | 1.05e-26 | 107 |
MS.gene48714.t1 | MTR_7g106510 | 38.462 | 156 | 80 | 2 | 3 | 158 | 5 | 144 | 1.12e-26 | 107 |
MS.gene48714.t1 | MTR_3g093900 | 29.016 | 193 | 126 | 2 | 3 | 195 | 5 | 186 | 4.44e-25 | 103 |
MS.gene48714.t1 | MTR_7g055790 | 53.211 | 109 | 33 | 1 | 4 | 112 | 61 | 151 | 8.83e-25 | 96.3 |
MS.gene48714.t1 | MTR_2g035590 | 59.794 | 97 | 38 | 1 | 75 | 170 | 1 | 97 | 9.54e-25 | 94.7 |
MS.gene48714.t1 | MTR_2g035580 | 35.099 | 151 | 97 | 1 | 7 | 157 | 6 | 155 | 7.38e-24 | 94.0 |
MS.gene48714.t1 | MTR_7g055940 | 49.038 | 104 | 25 | 2 | 4 | 107 | 3 | 78 | 9.21e-23 | 89.0 |
MS.gene48714.t1 | MTR_5g047560 | 35.065 | 154 | 82 | 3 | 4 | 157 | 3 | 138 | 8.76e-21 | 85.5 |
MS.gene48714.t1 | MTR_6g018920 | 32.432 | 111 | 68 | 4 | 4 | 108 | 3 | 112 | 5.52e-12 | 65.1 |
MS.gene48714.t1 | MTR_6g005450 | 35.965 | 114 | 65 | 5 | 1 | 108 | 1 | 112 | 7.15e-12 | 64.7 |
MS.gene48714.t1 | MTR_4g084780 | 57.692 | 52 | 22 | 0 | 75 | 126 | 1 | 52 | 1.29e-11 | 61.2 |
MS.gene48714.t1 | MTR_1g114730 | 32.432 | 111 | 68 | 3 | 4 | 108 | 3 | 112 | 1.44e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48714.t1 | AT5G48670 | 47.500 | 200 | 97 | 3 | 4 | 200 | 3 | 197 | 1.67e-46 | 157 |
MS.gene48714.t1 | AT1G65300 | 40.761 | 184 | 95 | 3 | 4 | 187 | 2 | 171 | 1.47e-41 | 143 |
MS.gene48714.t1 | AT1G65330 | 40.541 | 185 | 96 | 2 | 4 | 188 | 2 | 172 | 3.43e-39 | 137 |
MS.gene48714.t1 | AT5G26630 | 41.379 | 203 | 102 | 3 | 4 | 204 | 3 | 190 | 9.64e-38 | 132 |
MS.gene48714.t1 | AT5G26650 | 40.854 | 164 | 96 | 1 | 6 | 169 | 3 | 165 | 5.14e-37 | 134 |
MS.gene48714.t1 | AT5G27960 | 40.244 | 164 | 97 | 1 | 6 | 169 | 3 | 165 | 2.46e-36 | 131 |
MS.gene48714.t1 | AT1G31630 | 28.839 | 267 | 158 | 6 | 4 | 243 | 2 | 263 | 3.07e-35 | 128 |
MS.gene48714.t1 | AT1G31640 | 39.073 | 151 | 90 | 2 | 4 | 154 | 2 | 150 | 5.34e-32 | 122 |
MS.gene48714.t1 | AT5G27810 | 54.839 | 93 | 42 | 0 | 30 | 122 | 1 | 93 | 1.07e-30 | 110 |
MS.gene48714.t1 | AT3G05860 | 39.189 | 148 | 89 | 1 | 4 | 151 | 3 | 149 | 4.68e-30 | 111 |
MS.gene48714.t1 | AT3G05860 | 39.189 | 148 | 89 | 1 | 4 | 151 | 3 | 149 | 1.97e-29 | 111 |
MS.gene48714.t1 | AT3G05860 | 39.189 | 148 | 89 | 1 | 4 | 151 | 3 | 149 | 1.97e-29 | 111 |
MS.gene48714.t1 | AT2G28700 | 33.854 | 192 | 120 | 3 | 4 | 193 | 3 | 189 | 4.33e-28 | 109 |
MS.gene48714.t1 | AT5G26580 | 36.538 | 156 | 83 | 3 | 1 | 156 | 1 | 140 | 4.30e-26 | 104 |
MS.gene48714.t1 | AT1G22590 | 31.847 | 157 | 102 | 2 | 1 | 157 | 1 | 152 | 8.36e-25 | 96.7 |
MS.gene48714.t1 | AT5G06500 | 34.868 | 152 | 97 | 2 | 4 | 155 | 3 | 152 | 1.90e-19 | 84.7 |
MS.gene48714.t1 | AT2G40210 | 39.098 | 133 | 79 | 2 | 4 | 135 | 3 | 134 | 3.27e-17 | 80.1 |
MS.gene48714.t1 | AT5G58890 | 38.583 | 127 | 67 | 5 | 7 | 124 | 6 | 130 | 5.20e-16 | 75.9 |
MS.gene48714.t1 | AT5G55690 | 43.038 | 79 | 37 | 3 | 1 | 72 | 1 | 78 | 2.55e-12 | 65.5 |
MS.gene48714.t1 | AT5G55690 | 43.038 | 79 | 37 | 3 | 1 | 72 | 1 | 78 | 2.55e-12 | 65.5 |
Find 62 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAACAAAGAAAAGAAAAT+AGG | 0.231520 | 4.4:-72052599 | MS.gene48714:CDS |
GAGTGAAGAAATGGCAATTA+TGG | 0.233693 | 4.4:-72052337 | MS.gene48714:CDS |
CCATTTGGTGAGGTCAATTC+TGG | 0.235784 | 4.4:-72052216 | MS.gene48714:CDS |
TCAATTTCTCTTCAGCCTTC+AGG | 0.259829 | 4.4:+72052622 | None:intergenic |
ATAATGTCATCTTCATTAAT+AGG | 0.279856 | 4.4:+72052294 | None:intergenic |
GTGAGGTCAATTCTGGAGTT+TGG | 0.330469 | 4.4:-72052209 | MS.gene48714:CDS |
AACGAAGGGTCTATTGAAAA+AGG | 0.335070 | 4.4:-72052832 | MS.gene48714:CDS |
ATGAGCCTCAACCTGAGATT+TGG | 0.345571 | 4.4:-72052752 | MS.gene48714:CDS |
CCGCCATTTCGAGTTGGACT+TGG | 0.347668 | 4.4:+72052394 | None:intergenic |
TATGCAAAGTCAATTATTGA+TGG | 0.408286 | 4.4:-72052274 | MS.gene48714:CDS |
ATCTCAGGTTGAGGCTCATA+AGG | 0.418788 | 4.4:+72052756 | None:intergenic |
GAAACAAAGAAAAGAAAATA+GGG | 0.419680 | 4.4:-72052598 | MS.gene48714:CDS |
AGTGAAGAAATGGCAATTAT+GGG | 0.424565 | 4.4:-72052336 | MS.gene48714:CDS |
GAAGGACGTTAGTAGACGTT+TGG | 0.432671 | 4.4:-72052463 | MS.gene48714:CDS |
GTTGATTGACCACAATTTGA+AGG | 0.436294 | 4.4:-72052481 | MS.gene48714:CDS |
GGTCTGATTTACTACCTTGA+AGG | 0.436579 | 4.4:-72052188 | None:intergenic |
AAACCAAGTCCAACTCGAAA+TGG | 0.452175 | 4.4:-72052397 | MS.gene48714:CDS |
TTATGGGTCACGGCCATGTT+GGG | 0.453452 | 4.4:-72052320 | MS.gene48714:CDS |
AGCATCTAGGAGTGAAGAAA+TGG | 0.457574 | 4.4:-72052346 | MS.gene48714:CDS |
AACCTTACTTCTTCTACCCA+TGG | 0.464315 | 4.4:+72052908 | None:intergenic |
CTCATAAGGTCCATACACTA+TGG | 0.479698 | 4.4:+72052770 | None:intergenic |
TCAATTATTGATGGACTCAA+TGG | 0.482426 | 4.4:-72052265 | MS.gene48714:CDS |
TCTGGTAAAGGCCAAATCTC+AGG | 0.493519 | 4.4:+72052741 | None:intergenic |
AACCATGGGTAGAAGAAGTA+AGG | 0.501192 | 4.4:-72052910 | None:intergenic |
CCAGAATTGACCTCACCAAA+TGG | 0.504570 | 4.4:+72052216 | None:intergenic |
TGGATATGAGTTATCTTGCT+TGG | 0.509186 | 4.4:-72052503 | MS.gene48714:CDS |
TTAGTAGACGTTTGGAAGCA+TGG | 0.511917 | 4.4:-72052455 | MS.gene48714:CDS |
CACCACTTCTAGCAGCATCT+AGG | 0.513358 | 4.4:-72052359 | MS.gene48714:CDS |
TGCAACATCATTGACAATGA+AGG | 0.517037 | 4.4:+72052878 | None:intergenic |
ATGAGTCAATGTCTTAATGA+AGG | 0.517500 | 4.4:-72052555 | MS.gene48714:CDS |
CAATGATCAAAATCAAATCA+TGG | 0.521352 | 4.4:-72052427 | MS.gene48714:CDS |
TTTGTGTCAAGAAAGTCTCT+TGG | 0.525855 | 4.4:+72052649 | None:intergenic |
AGAGACTTTCTTGACACAAA+GGG | 0.533444 | 4.4:-72052646 | MS.gene48714:CDS |
GAAGCCTGTGCCATAGTGTA+TGG | 0.533456 | 4.4:-72052780 | MS.gene48714:CDS |
GTGCAAGAGACAGTGCCATT+TGG | 0.542398 | 4.4:-72052231 | MS.gene48714:CDS |
GATTTGGCCTTTACCAGAGG+GGG | 0.545213 | 4.4:-72052736 | MS.gene48714:CDS |
CTCCTAGATGCTGCTAGAAG+TGG | 0.545933 | 4.4:+72052357 | None:intergenic |
TAGTAGACGTTTGGAAGCAT+GGG | 0.557707 | 4.4:-72052454 | MS.gene48714:CDS |
GAGATTTGGCCTTTACCAGA+GGG | 0.564008 | 4.4:-72052738 | MS.gene48714:CDS |
CTTGACACAAAGGGTCCTGA+AGG | 0.570745 | 4.4:-72052637 | MS.gene48714:CDS |
TACTAACGTCCTTCAAATTG+TGG | 0.573371 | 4.4:+72052472 | None:intergenic |
ATTATGGGTCACGGCCATGT+TGG | 0.576510 | 4.4:-72052321 | MS.gene48714:CDS |
TTGTTGCCGCCATTTCGAGT+TGG | 0.584691 | 4.4:+72052388 | None:intergenic |
GAAATGGCAATTATGGGTCA+CGG | 0.585455 | 4.4:-72052330 | MS.gene48714:CDS |
CATTAATAGGTATCCCAACA+TGG | 0.589301 | 4.4:+72052307 | None:intergenic |
TCATTGTCAATGATGTTGCA+AGG | 0.595963 | 4.4:-72052875 | MS.gene48714:CDS |
ACAGGCTTCAATGCCACAGA+GGG | 0.601811 | 4.4:+72052794 | None:intergenic |
AAAGGCCAAATCTCAGGTTG+AGG | 0.605277 | 4.4:+72052747 | None:intergenic |
TTGATGGACTCAATGGTGGC+TGG | 0.607204 | 4.4:-72052258 | MS.gene48714:CDS |
ATCATACAAGAAAAGAACGA+AGG | 0.618898 | 4.4:-72052847 | MS.gene48714:CDS |
TCATACAAGAAAAGAACGAA+GGG | 0.620354 | 4.4:-72052846 | MS.gene48714:CDS |
AAGAGACTTTCTTGACACAA+AGG | 0.620991 | 4.4:-72052647 | MS.gene48714:CDS |
TGAGATTTGGCCTTTACCAG+AGG | 0.627166 | 4.4:-72052739 | MS.gene48714:CDS |
CCAAGTCCAACTCGAAATGG+CGG | 0.631061 | 4.4:-72052394 | MS.gene48714:CDS |
AGGTCCATACACTATGGCAC+AGG | 0.635258 | 4.4:+72052776 | None:intergenic |
AGAGACAGTGCCATTTGGTG+AGG | 0.639188 | 4.4:-72052226 | MS.gene48714:CDS |
AGATTTGGCCTTTACCAGAG+GGG | 0.656413 | 4.4:-72052737 | MS.gene48714:CDS |
GATGCTGCTAGAAGTGGTGA+TGG | 0.656844 | 4.4:+72052363 | None:intergenic |
ATTATTGATGGACTCAATGG+TGG | 0.666274 | 4.4:-72052262 | MS.gene48714:CDS |
GCATGACAATATGTCAACAA+TGG | 0.671130 | 4.4:-72052523 | MS.gene48714:CDS |
GCTGAACTTAGCACCCTCTG+TGG | 0.677042 | 4.4:-72052807 | MS.gene48714:CDS |
CACAGGCTTCAATGCCACAG+AGG | 0.696692 | 4.4:+72052793 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAACAAAGAAAAGAAAAT+AGG | - | chr4.4:72052498-72052517 | MS.gene48714:CDS | 20.0% |
!! | ATAATGTCATCTTCATTAAT+AGG | + | chr4.4:72052806-72052825 | None:intergenic | 20.0% |
!! | GAAACAAAGAAAAGAAAATA+GGG | - | chr4.4:72052499-72052518 | MS.gene48714:CDS | 20.0% |
! | CAATGATCAAAATCAAATCA+TGG | - | chr4.4:72052670-72052689 | MS.gene48714:CDS | 25.0% |
! | TATGCAAAGTCAATTATTGA+TGG | - | chr4.4:72052823-72052842 | MS.gene48714:CDS | 25.0% |
AGTGAAGAAATGGCAATTAT+GGG | - | chr4.4:72052761-72052780 | MS.gene48714:CDS | 30.0% | |
ATCATACAAGAAAAGAACGA+AGG | - | chr4.4:72052250-72052269 | MS.gene48714:CDS | 30.0% | |
ATGAGTCAATGTCTTAATGA+AGG | - | chr4.4:72052542-72052561 | MS.gene48714:CDS | 30.0% | |
TCATACAAGAAAAGAACGAA+GGG | - | chr4.4:72052251-72052270 | MS.gene48714:CDS | 30.0% | |
!! | TCAATTATTGATGGACTCAA+TGG | - | chr4.4:72052832-72052851 | MS.gene48714:CDS | 30.0% |
AACGAAGGGTCTATTGAAAA+AGG | - | chr4.4:72052265-72052284 | MS.gene48714:CDS | 35.0% | |
AAGAGACTTTCTTGACACAA+AGG | - | chr4.4:72052450-72052469 | MS.gene48714:CDS | 35.0% | |
AGAGACTTTCTTGACACAAA+GGG | - | chr4.4:72052451-72052470 | MS.gene48714:CDS | 35.0% | |
CATTAATAGGTATCCCAACA+TGG | + | chr4.4:72052793-72052812 | None:intergenic | 35.0% | |
GAGTGAAGAAATGGCAATTA+TGG | - | chr4.4:72052760-72052779 | MS.gene48714:CDS | 35.0% | |
GCATGACAATATGTCAACAA+TGG | - | chr4.4:72052574-72052593 | MS.gene48714:CDS | 35.0% | |
GTTGATTGACCACAATTTGA+AGG | - | chr4.4:72052616-72052635 | MS.gene48714:CDS | 35.0% | |
TACTAACGTCCTTCAAATTG+TGG | + | chr4.4:72052628-72052647 | None:intergenic | 35.0% | |
TCATTGTCAATGATGTTGCA+AGG | - | chr4.4:72052222-72052241 | MS.gene48714:CDS | 35.0% | |
TGCAACATCATTGACAATGA+AGG | + | chr4.4:72052222-72052241 | None:intergenic | 35.0% | |
TGGATATGAGTTATCTTGCT+TGG | - | chr4.4:72052594-72052613 | MS.gene48714:CDS | 35.0% | |
TTTGTGTCAAGAAAGTCTCT+TGG | + | chr4.4:72052451-72052470 | None:intergenic | 35.0% | |
!! | ATTATTGATGGACTCAATGG+TGG | - | chr4.4:72052835-72052854 | MS.gene48714:CDS | 35.0% |
!! | TGAATTTTGAGAGCACAGAT+TGG | + | chr4.4:72052388-72052407 | None:intergenic | 35.0% |
AAACCAAGTCCAACTCGAAA+TGG | - | chr4.4:72052700-72052719 | MS.gene48714:CDS | 40.0% | |
AGCATCTAGGAGTGAAGAAA+TGG | - | chr4.4:72052751-72052770 | MS.gene48714:CDS | 40.0% | |
CTCATAAGGTCCATACACTA+TGG | + | chr4.4:72052330-72052349 | None:intergenic | 40.0% | |
GAAATGGCAATTATGGGTCA+CGG | - | chr4.4:72052767-72052786 | MS.gene48714:CDS | 40.0% | |
TCAATTTCTCTTCAGCCTTC+AGG | + | chr4.4:72052478-72052497 | None:intergenic | 40.0% | |
TTAGTAGACGTTTGGAAGCA+TGG | - | chr4.4:72052642-72052661 | MS.gene48714:CDS | 40.0% | |
! | TAGTAGACGTTTGGAAGCAT+GGG | - | chr4.4:72052643-72052662 | MS.gene48714:CDS | 40.0% |
ATGAGCCTCAACCTGAGATT+TGG | - | chr4.4:72052345-72052364 | MS.gene48714:CDS | 45.0% | |
CCAGAATTGACCTCACCAAA+TGG | + | chr4.4:72052884-72052903 | None:intergenic | 45.0% | |
GAAGGACGTTAGTAGACGTT+TGG | - | chr4.4:72052634-72052653 | MS.gene48714:CDS | 45.0% | |
TCTGGTAAAGGCCAAATCTC+AGG | + | chr4.4:72052359-72052378 | None:intergenic | 45.0% | |
! | AAAGGCCAAATCTCAGGTTG+AGG | + | chr4.4:72052353-72052372 | None:intergenic | 45.0% |
! | AGATTTGGCCTTTACCAGAG+GGG | - | chr4.4:72052360-72052379 | MS.gene48714:CDS | 45.0% |
! | CCATTTGGTGAGGTCAATTC+TGG | - | chr4.4:72052881-72052900 | MS.gene48714:CDS | 45.0% |
! | GAGATTTGGCCTTTACCAGA+GGG | - | chr4.4:72052359-72052378 | MS.gene48714:CDS | 45.0% |
! | TGAGATTTGGCCTTTACCAG+AGG | - | chr4.4:72052358-72052377 | MS.gene48714:CDS | 45.0% |
!! | ATCTCAGGTTGAGGCTCATA+AGG | + | chr4.4:72052344-72052363 | None:intergenic | 45.0% |
!! | GTGAGGTCAATTCTGGAGTT+TGG | - | chr4.4:72052888-72052907 | MS.gene48714:CDS | 45.0% |
ACAGGCTTCAATGCCACAGA+GGG | + | chr4.4:72052306-72052325 | None:intergenic | 50.0% | |
AGGTCCATACACTATGGCAC+AGG | + | chr4.4:72052324-72052343 | None:intergenic | 50.0% | |
ATTATGGGTCACGGCCATGT+TGG | - | chr4.4:72052776-72052795 | MS.gene48714:CDS | 50.0% | |
CACCACTTCTAGCAGCATCT+AGG | - | chr4.4:72052738-72052757 | MS.gene48714:CDS | 50.0% | |
CCAAGTCCAACTCGAAATGG+CGG | - | chr4.4:72052703-72052722 | MS.gene48714:CDS | 50.0% | |
CTCCTAGATGCTGCTAGAAG+TGG | + | chr4.4:72052743-72052762 | None:intergenic | 50.0% | |
CTTGACACAAAGGGTCCTGA+AGG | - | chr4.4:72052460-72052479 | MS.gene48714:CDS | 50.0% | |
GAAGCCTGTGCCATAGTGTA+TGG | - | chr4.4:72052317-72052336 | MS.gene48714:CDS | 50.0% | |
GATGCTGCTAGAAGTGGTGA+TGG | + | chr4.4:72052737-72052756 | None:intergenic | 50.0% | |
TTATGGGTCACGGCCATGTT+GGG | - | chr4.4:72052777-72052796 | MS.gene48714:CDS | 50.0% | |
! | GATTTGGCCTTTACCAGAGG+GGG | - | chr4.4:72052361-72052380 | MS.gene48714:CDS | 50.0% |
! | GTGCAAGAGACAGTGCCATT+TGG | - | chr4.4:72052866-72052885 | MS.gene48714:CDS | 50.0% |
! | TTGTTGCCGCCATTTCGAGT+TGG | + | chr4.4:72052712-72052731 | None:intergenic | 50.0% |
!! | AGAGACAGTGCCATTTGGTG+AGG | - | chr4.4:72052871-72052890 | MS.gene48714:CDS | 50.0% |
!! | TTGATGGACTCAATGGTGGC+TGG | - | chr4.4:72052839-72052858 | MS.gene48714:CDS | 50.0% |
CACAGGCTTCAATGCCACAG+AGG | + | chr4.4:72052307-72052326 | None:intergenic | 55.0% | |
GATTGGACCCCCTCTGGTAA+AGG | + | chr4.4:72052371-72052390 | None:intergenic | 55.0% | |
GCTGAACTTAGCACCCTCTG+TGG | - | chr4.4:72052290-72052309 | MS.gene48714:CDS | 55.0% | |
!! | CCGCCATTTCGAGTTGGACT+TGG | + | chr4.4:72052706-72052725 | None:intergenic | 55.0% |
AGCACAGATTGGACCCCCTC+TGG | + | chr4.4:72052377-72052396 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 72052191 | 72052928 | 72052191 | ID=MS.gene48714 |
chr4.4 | mRNA | 72052191 | 72052928 | 72052191 | ID=MS.gene48714.t1;Parent=MS.gene48714 |
chr4.4 | exon | 72052191 | 72052928 | 72052191 | ID=MS.gene48714.t1.exon1;Parent=MS.gene48714.t1 |
chr4.4 | CDS | 72052191 | 72052928 | 72052191 | ID=cds.MS.gene48714.t1;Parent=MS.gene48714.t1 |
Gene Sequence |
Protein sequence |