Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48719.t1 | XP_003605494.2 | 69.3 | 244 | 40 | 2 | 1 | 222 | 1 | 231 | 1.70E-84 | 322.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48719.t1 | Q9FJK3 | 48.9 | 182 | 92 | 1 | 1 | 182 | 1 | 181 | 2.4e-39 | 163.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48719.t1 | G7JN54 | 69.3 | 244 | 40 | 2 | 1 | 222 | 1 | 231 | 1.2e-84 | 322.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene48719.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48719.t1 | MTR_4g031910 | 73.362 | 229 | 54 | 1 | 1 | 222 | 1 | 229 | 9.95e-114 | 324 |
MS.gene48719.t1 | MTR_4g032290 | 71.311 | 244 | 35 | 2 | 1 | 222 | 1 | 231 | 1.24e-112 | 322 |
MS.gene48719.t1 | MTR_4g032620 | 58.874 | 231 | 86 | 1 | 1 | 222 | 1 | 231 | 3.83e-96 | 280 |
MS.gene48719.t1 | MTR_8g036130 | 58.065 | 248 | 77 | 4 | 1 | 222 | 1 | 247 | 3.52e-91 | 268 |
MS.gene48719.t1 | MTR_4g032260 | 81.132 | 159 | 30 | 0 | 1 | 159 | 1 | 159 | 1.08e-83 | 246 |
MS.gene48719.t1 | MTR_3g065100 | 47.718 | 241 | 101 | 4 | 1 | 219 | 1 | 238 | 5.66e-63 | 196 |
MS.gene48719.t1 | MTR_3g466980 | 46.119 | 219 | 102 | 4 | 1 | 214 | 1 | 208 | 4.05e-61 | 191 |
MS.gene48719.t1 | MTR_2g035610 | 72.131 | 122 | 34 | 0 | 1 | 122 | 1 | 122 | 6.19e-51 | 161 |
MS.gene48719.t1 | MTR_4g032270 | 78.125 | 96 | 13 | 1 | 135 | 222 | 36 | 131 | 6.25e-47 | 151 |
MS.gene48719.t1 | MTR_3g466830 | 47.682 | 151 | 78 | 1 | 3 | 153 | 2 | 151 | 1.72e-45 | 149 |
MS.gene48719.t1 | MTR_5g075380 | 45.161 | 155 | 84 | 1 | 1 | 155 | 1 | 154 | 8.19e-45 | 147 |
MS.gene48719.t1 | MTR_4g063790 | 42.208 | 154 | 89 | 0 | 1 | 154 | 1 | 154 | 2.38e-42 | 141 |
MS.gene48719.t1 | MTR_5g047580 | 44.872 | 156 | 84 | 2 | 1 | 156 | 1 | 154 | 7.27e-41 | 137 |
MS.gene48719.t1 | MTR_3g031100 | 41.139 | 158 | 93 | 0 | 1 | 158 | 1 | 158 | 1.77e-40 | 139 |
MS.gene48719.t1 | MTR_3g467080 | 40.385 | 156 | 93 | 0 | 1 | 156 | 1 | 156 | 3.03e-40 | 135 |
MS.gene48719.t1 | MTR_2g016210 | 39.548 | 177 | 106 | 1 | 1 | 176 | 1 | 177 | 7.92e-40 | 137 |
MS.gene48719.t1 | MTR_3g466890 | 42.763 | 152 | 86 | 1 | 3 | 154 | 2 | 152 | 1.47e-38 | 131 |
MS.gene48719.t1 | MTR_7g011950 | 45.283 | 159 | 85 | 2 | 1 | 159 | 1 | 157 | 3.80e-37 | 127 |
MS.gene48719.t1 | MTR_1g077390 | 40.881 | 159 | 92 | 2 | 1 | 159 | 1 | 157 | 3.11e-36 | 125 |
MS.gene48719.t1 | MTR_4g028720 | 44.654 | 159 | 86 | 2 | 1 | 159 | 1 | 157 | 4.66e-36 | 125 |
MS.gene48719.t1 | MTR_1g077320 | 44.654 | 159 | 86 | 2 | 1 | 159 | 1 | 157 | 2.38e-35 | 123 |
MS.gene48719.t1 | MTR_1g090783 | 40.260 | 154 | 90 | 2 | 3 | 156 | 2 | 153 | 1.81e-34 | 120 |
MS.gene48719.t1 | MTR_1g090697 | 40.667 | 150 | 87 | 2 | 1 | 150 | 1 | 148 | 1.82e-33 | 118 |
MS.gene48719.t1 | MTR_1g084950 | 43.590 | 156 | 86 | 2 | 1 | 156 | 1 | 154 | 2.33e-33 | 117 |
MS.gene48719.t1 | MTR_1g077300 | 43.396 | 159 | 86 | 2 | 1 | 159 | 1 | 155 | 2.50e-33 | 117 |
MS.gene48719.t1 | MTR_3g465410 | 42.063 | 126 | 73 | 0 | 29 | 154 | 1 | 126 | 4.43e-33 | 116 |
MS.gene48719.t1 | MTR_1g090710 | 37.662 | 154 | 95 | 1 | 1 | 154 | 1 | 153 | 2.62e-32 | 115 |
MS.gene48719.t1 | MTR_4g028800 | 75.714 | 70 | 15 | 1 | 1 | 70 | 1 | 68 | 1.61e-31 | 110 |
MS.gene48719.t1 | MTR_3g031240 | 34.177 | 158 | 100 | 2 | 1 | 156 | 1 | 156 | 2.24e-29 | 108 |
MS.gene48719.t1 | MTR_7g055800 | 50.427 | 117 | 30 | 2 | 1 | 117 | 1 | 89 | 7.09e-29 | 104 |
MS.gene48719.t1 | MTR_3g466900 | 39.837 | 123 | 73 | 1 | 32 | 154 | 2 | 123 | 1.50e-28 | 104 |
MS.gene48719.t1 | MTR_4g019670 | 40.945 | 127 | 75 | 0 | 3 | 129 | 6 | 132 | 4.91e-26 | 105 |
MS.gene48719.t1 | MTR_3g466930 | 37.398 | 123 | 76 | 1 | 32 | 154 | 2 | 123 | 1.55e-25 | 97.1 |
MS.gene48719.t1 | MTR_2g035580 | 35.669 | 157 | 100 | 1 | 1 | 157 | 1 | 156 | 3.08e-25 | 97.1 |
MS.gene48719.t1 | MTR_7g106510 | 36.306 | 157 | 84 | 2 | 3 | 159 | 6 | 146 | 1.08e-24 | 101 |
MS.gene48719.t1 | MTR_7g055790 | 51.351 | 111 | 36 | 1 | 1 | 111 | 59 | 151 | 1.28e-24 | 95.1 |
MS.gene48719.t1 | MTR_7g055940 | 49.057 | 106 | 26 | 2 | 1 | 106 | 1 | 78 | 1.43e-23 | 90.1 |
MS.gene48719.t1 | MTR_3g093900 | 32.394 | 142 | 96 | 0 | 3 | 144 | 6 | 147 | 5.72e-23 | 96.7 |
MS.gene48719.t1 | MTR_5g047560 | 35.256 | 156 | 83 | 3 | 1 | 156 | 1 | 138 | 6.68e-23 | 90.5 |
MS.gene48719.t1 | MTR_2g035590 | 58.025 | 81 | 34 | 0 | 74 | 154 | 1 | 81 | 1.34e-18 | 78.2 |
MS.gene48719.t1 | MTR_6g018920 | 35.398 | 113 | 66 | 4 | 1 | 107 | 1 | 112 | 2.74e-13 | 68.2 |
MS.gene48719.t1 | MTR_6g005450 | 35.398 | 113 | 66 | 4 | 1 | 107 | 1 | 112 | 2.80e-13 | 68.2 |
MS.gene48719.t1 | MTR_1g114730 | 32.743 | 113 | 69 | 3 | 1 | 107 | 1 | 112 | 4.04e-13 | 67.8 |
MS.gene48719.t1 | MTR_4g084780 | 38.739 | 111 | 52 | 2 | 74 | 168 | 1 | 111 | 1.30e-12 | 63.5 |
MS.gene48719.t1 | MTR_6g005440 | 36.283 | 113 | 65 | 4 | 1 | 107 | 1 | 112 | 1.68e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48719.t1 | AT5G48670 | 55.195 | 154 | 68 | 1 | 1 | 154 | 1 | 153 | 3.84e-46 | 155 |
MS.gene48719.t1 | AT1G65300 | 40.331 | 181 | 99 | 2 | 3 | 175 | 2 | 181 | 1.51e-40 | 140 |
MS.gene48719.t1 | AT1G65330 | 42.262 | 168 | 88 | 2 | 3 | 162 | 2 | 168 | 5.57e-39 | 136 |
MS.gene48719.t1 | AT5G26630 | 42.408 | 191 | 99 | 3 | 1 | 181 | 1 | 190 | 6.83e-38 | 131 |
MS.gene48719.t1 | AT5G26650 | 41.071 | 168 | 88 | 2 | 5 | 162 | 3 | 169 | 5.14e-36 | 130 |
MS.gene48719.t1 | AT5G27960 | 41.071 | 168 | 88 | 3 | 5 | 162 | 3 | 169 | 1.44e-35 | 128 |
MS.gene48719.t1 | AT1G31630 | 36.310 | 168 | 97 | 3 | 3 | 162 | 2 | 167 | 1.05e-34 | 126 |
MS.gene48719.t1 | AT1G31640 | 39.073 | 151 | 90 | 2 | 3 | 153 | 2 | 150 | 1.09e-32 | 123 |
MS.gene48719.t1 | AT3G05860 | 38.608 | 158 | 96 | 1 | 1 | 158 | 1 | 157 | 1.14e-32 | 117 |
MS.gene48719.t1 | AT3G05860 | 38.608 | 158 | 96 | 1 | 1 | 158 | 1 | 157 | 3.39e-32 | 117 |
MS.gene48719.t1 | AT3G05860 | 38.608 | 158 | 96 | 1 | 1 | 158 | 1 | 157 | 3.76e-32 | 117 |
MS.gene48719.t1 | AT5G27810 | 56.989 | 93 | 40 | 0 | 29 | 121 | 1 | 93 | 7.46e-32 | 112 |
MS.gene48719.t1 | AT2G28700 | 34.857 | 175 | 113 | 1 | 1 | 175 | 1 | 174 | 1.03e-28 | 110 |
MS.gene48719.t1 | AT1G22590 | 32.099 | 162 | 106 | 1 | 1 | 162 | 1 | 158 | 1.04e-25 | 98.6 |
MS.gene48719.t1 | AT5G26580 | 36.364 | 154 | 83 | 2 | 1 | 154 | 1 | 139 | 4.01e-25 | 101 |
MS.gene48719.t1 | AT5G06500 | 35.032 | 157 | 100 | 2 | 1 | 157 | 1 | 155 | 8.44e-22 | 90.1 |
MS.gene48719.t1 | AT2G40210 | 37.984 | 129 | 79 | 1 | 1 | 129 | 1 | 128 | 1.27e-18 | 83.6 |
MS.gene48719.t1 | AT5G58890 | 37.795 | 127 | 68 | 5 | 6 | 123 | 6 | 130 | 7.03e-16 | 75.1 |
MS.gene48719.t1 | AT5G55690 | 44.872 | 78 | 36 | 2 | 1 | 71 | 1 | 78 | 2.74e-14 | 70.5 |
MS.gene48719.t1 | AT5G55690 | 44.872 | 78 | 36 | 2 | 1 | 71 | 1 | 78 | 2.74e-14 | 70.5 |
MS.gene48719.t1 | AT2G15660 | 30.000 | 140 | 79 | 3 | 11 | 150 | 18 | 138 | 6.22e-14 | 69.3 |
MS.gene48719.t1 | AT5G27944 | 32.727 | 110 | 62 | 3 | 24 | 131 | 41 | 140 | 6.66e-11 | 60.5 |
Find 60 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTTTGGTGAGATCAATTC+TGG | 0.238779 | 4.4:-72092147 | MS.gene48719:CDS |
GAGCGAAGAAATGGCAATTA+TGG | 0.251384 | 4.4:-72092268 | MS.gene48719:CDS |
TACCAATGTCCTTCAAATTA+TGG | 0.254451 | 4.4:+72092337 | None:intergenic |
TGAAACAAAGAAAAGATAAT+AGG | 0.275750 | 4.4:-72092464 | MS.gene48719:CDS |
ATCCTTCAAGGTAGTAAATC+AGG | 0.301540 | 4.4:+72092117 | None:intergenic |
ATAATGTCATCATTATTAAT+AGG | 0.321721 | 4.4:+72092225 | None:intergenic |
TATTAATAGGTATTCCAATA+TGG | 0.324054 | 4.4:+72092238 | None:intergenic |
AACGAAGGGTCTATTGAAAA+AGG | 0.335070 | 4.4:-72092697 | MS.gene48719:CDS |
ATGAGCCTCAACCTGAGATT+TGG | 0.345571 | 4.4:-72092617 | MS.gene48719:CDS |
ATCTCAGGTTGAGGCTCATA+AGG | 0.373927 | 4.4:+72092621 | None:intergenic |
GCCCTGATTTACTACCTTGA+AGG | 0.388674 | 4.4:-72092119 | None:intergenic |
TATGCAAAGTCAATTATTGA+TGG | 0.408286 | 4.4:-72092205 | MS.gene48719:CDS |
GAAGGACATTGGTAGACGTT+TGG | 0.410243 | 4.4:-72092328 | MS.gene48719:CDS |
GAAACAAAGAAAAGATAATA+GGG | 0.419680 | 4.4:-72092463 | MS.gene48719:CDS |
ATTATGGGTCATGGCCATAT+TGG | 0.424355 | 4.4:-72092252 | MS.gene48719:CDS |
AGCGAAGAAATGGCAATTAT+GGG | 0.425600 | 4.4:-72092267 | MS.gene48719:CDS |
AGCATCTAGGAGCGAAGAAA+TGG | 0.428793 | 4.4:-72092277 | MS.gene48719:CDS |
GTTGATTGACCATAATTTGA+AGG | 0.445081 | 4.4:-72092346 | MS.gene48719:CDS |
CTAGATGCTGCTGGAGGTGG+TGG | 0.445358 | 4.4:+72092291 | None:intergenic |
CACAACCATGGCTAGAAGTA+AGG | 0.457305 | 4.4:-72092775 | None:intergenic |
TCTGGTGAAGGCCAAATCTC+AGG | 0.467267 | 4.4:+72092606 | None:intergenic |
CTCATAAGGGCCATACACTA+TGG | 0.468858 | 4.4:+72092635 | None:intergenic |
CTTGACACAAAGGGTTCTGA+AGG | 0.478789 | 4.4:-72092502 | MS.gene48719:CDS |
CTCCTAGATGCTGCTGGAGG+TGG | 0.480058 | 4.4:+72092288 | None:intergenic |
TCAATTATTGATGGACTCAA+TGG | 0.482426 | 4.4:-72092196 | MS.gene48719:CDS |
TTGATTTGAGTTATCTTACT+TGG | 0.482489 | 4.4:-72092368 | MS.gene48719:CDS |
TCTTCGCTCCTAGATGCTGC+TGG | 0.487238 | 4.4:+72092282 | None:intergenic |
AGAGACTTTCTTGACACAAA+GGG | 0.517022 | 4.4:-72092511 | MS.gene48719:CDS |
GACCATAATTTGAAGGACAT+TGG | 0.517963 | 4.4:-72092339 | MS.gene48719:CDS |
CACCACCTCCAGCAGCATCT+AGG | 0.522994 | 4.4:-72092290 | MS.gene48719:CDS |
GGACATTGGTAGACGTTTGG+CGG | 0.524285 | 4.4:-72092325 | MS.gene48719:CDS |
TTTGTGTCAAGAAAGTCTCT+TGG | 0.525855 | 4.4:+72092514 | None:intergenic |
ACAGGCTTCAATGCCGCAGA+GGG | 0.526019 | 4.4:+72092659 | None:intergenic |
TTTAACCTTACTTCTAGCCA+TGG | 0.533701 | 4.4:+72092770 | None:intergenic |
TCTCAGGTTGAGGCTCATAA+GGG | 0.533923 | 4.4:+72092622 | None:intergenic |
ACTTGCCTTCATTGTCAATG+AGG | 0.536135 | 4.4:-72092748 | MS.gene48719:CDS |
ATGTCTCATTGTCTCAATGA+AGG | 0.542205 | 4.4:-72092420 | MS.gene48719:CDS |
GAAATGGCAATTATGGGTCA+TGG | 0.549964 | 4.4:-72092261 | MS.gene48719:CDS |
TCATTGTCAATGAGGCTACA+AGG | 0.551605 | 4.4:-72092740 | MS.gene48719:CDS |
TGTAGCCTCATTGACAATGA+AGG | 0.553670 | 4.4:+72092743 | None:intergenic |
CCAGAATTGATCTCACCAAA+GGG | 0.554343 | 4.4:+72092147 | None:intergenic |
GTGCAAGAGACAGTGCCCTT+TGG | 0.557727 | 4.4:-72092162 | MS.gene48719:CDS |
GAAGCCTGTGCCATAGTGTA+TGG | 0.559714 | 4.4:-72092645 | MS.gene48719:CDS |
GAGATTTGGCCTTCACCAGA+GGG | 0.565461 | 4.4:-72092603 | MS.gene48719:CDS |
GATTTGGCCTTCACCAGAGG+GGG | 0.573799 | 4.4:-72092601 | MS.gene48719:CDS |
TCCTTCAAGGTAGTAAATCA+GGG | 0.588454 | 4.4:+72092118 | None:intergenic |
TCCAGAATTGATCTCACCAA+AGG | 0.590517 | 4.4:+72092146 | None:intergenic |
GAAGGCCAAATCTCAGGTTG+AGG | 0.598100 | 4.4:+72092612 | None:intergenic |
TTGATGGACTCAATGGTGGC+TGG | 0.607204 | 4.4:-72092189 | MS.gene48719:CDS |
AAGAGACTTTCTTGACACAA+AGG | 0.607804 | 4.4:-72092512 | MS.gene48719:CDS |
CACAGGCTTCAATGCCGCAG+AGG | 0.608040 | 4.4:+72092658 | None:intergenic |
TGAGATTTGGCCTTCACCAG+AGG | 0.614269 | 4.4:-72092604 | MS.gene48719:CDS |
ATCATACAAGAAAAGAACGA+AGG | 0.618898 | 4.4:-72092712 | MS.gene48719:CDS |
TCATACAAGAAAAGAACGAA+GGG | 0.620354 | 4.4:-72092711 | MS.gene48719:CDS |
AGGGCCATACACTATGGCAC+AGG | 0.641363 | 4.4:+72092641 | None:intergenic |
TGTTGACGACAATATGTCAA+CGG | 0.648930 | 4.4:-72092391 | MS.gene48719:CDS |
AGATTTGGCCTTCACCAGAG+GGG | 0.650878 | 4.4:-72092602 | MS.gene48719:CDS |
ATTATTGATGGACTCAATGG+TGG | 0.666274 | 4.4:-72092193 | MS.gene48719:CDS |
TCGCTCCTAGATGCTGCTGG+AGG | 0.676090 | 4.4:+72092285 | None:intergenic |
GCTGAACTTAGCACCCTCTG+CGG | 0.760063 | 4.4:-72092672 | MS.gene48719:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATGTCATCATTATTAAT+AGG | + | chr4.4:72092668-72092687 | None:intergenic | 15.0% |
!! | GAAACAAAGAAAAGATAATA+GGG | - | chr4.4:72092427-72092446 | MS.gene48719:CDS | 20.0% |
!! | TATTAATAGGTATTCCAATA+TGG | + | chr4.4:72092655-72092674 | None:intergenic | 20.0% |
!! | TGAAACAAAGAAAAGATAAT+AGG | - | chr4.4:72092426-72092445 | MS.gene48719:CDS | 20.0% |
! | TATGCAAAGTCAATTATTGA+TGG | - | chr4.4:72092685-72092704 | MS.gene48719:CDS | 25.0% |
!! | TTGATTTGAGTTATCTTACT+TGG | - | chr4.4:72092522-72092541 | MS.gene48719:CDS | 25.0% |
ATCATACAAGAAAAGAACGA+AGG | - | chr4.4:72092178-72092197 | MS.gene48719:CDS | 30.0% | |
GTTGATTGACCATAATTTGA+AGG | - | chr4.4:72092544-72092563 | MS.gene48719:CDS | 30.0% | |
TACCAATGTCCTTCAAATTA+TGG | + | chr4.4:72092556-72092575 | None:intergenic | 30.0% | |
TCATACAAGAAAAGAACGAA+GGG | - | chr4.4:72092179-72092198 | MS.gene48719:CDS | 30.0% | |
!! | TCAATTATTGATGGACTCAA+TGG | - | chr4.4:72092694-72092713 | MS.gene48719:CDS | 30.0% |
AACGAAGGGTCTATTGAAAA+AGG | - | chr4.4:72092193-72092212 | MS.gene48719:CDS | 35.0% | |
AAGAGACTTTCTTGACACAA+AGG | - | chr4.4:72092378-72092397 | MS.gene48719:CDS | 35.0% | |
AGAGACTTTCTTGACACAAA+GGG | - | chr4.4:72092379-72092398 | MS.gene48719:CDS | 35.0% | |
AGCGAAGAAATGGCAATTAT+GGG | - | chr4.4:72092623-72092642 | MS.gene48719:CDS | 35.0% | |
ATGTCTCATTGTCTCAATGA+AGG | - | chr4.4:72092470-72092489 | MS.gene48719:CDS | 35.0% | |
GACCATAATTTGAAGGACAT+TGG | - | chr4.4:72092551-72092570 | MS.gene48719:CDS | 35.0% | |
TGTTGACGACAATATGTCAA+CGG | - | chr4.4:72092499-72092518 | MS.gene48719:CDS | 35.0% | |
TTTGTGTCAAGAAAGTCTCT+TGG | + | chr4.4:72092379-72092398 | None:intergenic | 35.0% | |
!! | ATTATTGATGGACTCAATGG+TGG | - | chr4.4:72092697-72092716 | MS.gene48719:CDS | 35.0% |
!! | TGAATTTTGAGAGCACAGAT+TGG | + | chr4.4:72092316-72092335 | None:intergenic | 35.0% |
ACTTGCCTTCATTGTCAATG+AGG | - | chr4.4:72092142-72092161 | MS.gene48719:CDS | 40.0% | |
ATTATGGGTCATGGCCATAT+TGG | - | chr4.4:72092638-72092657 | MS.gene48719:CDS | 40.0% | |
CCAGAATTGATCTCACCAAA+GGG | + | chr4.4:72092746-72092765 | None:intergenic | 40.0% | |
GAAATGGCAATTATGGGTCA+TGG | - | chr4.4:72092629-72092648 | MS.gene48719:CDS | 40.0% | |
GAGCGAAGAAATGGCAATTA+TGG | - | chr4.4:72092622-72092641 | MS.gene48719:CDS | 40.0% | |
TCATTGTCAATGAGGCTACA+AGG | - | chr4.4:72092150-72092169 | MS.gene48719:CDS | 40.0% | |
TCCAGAATTGATCTCACCAA+AGG | + | chr4.4:72092747-72092766 | None:intergenic | 40.0% | |
TGTAGCCTCATTGACAATGA+AGG | + | chr4.4:72092150-72092169 | None:intergenic | 40.0% | |
AGCATCTAGGAGCGAAGAAA+TGG | - | chr4.4:72092613-72092632 | MS.gene48719:CDS | 45.0% | |
ATGAGCCTCAACCTGAGATT+TGG | - | chr4.4:72092273-72092292 | MS.gene48719:CDS | 45.0% | |
CCCTTTGGTGAGATCAATTC+TGG | - | chr4.4:72092743-72092762 | MS.gene48719:CDS | 45.0% | |
CTCATAAGGGCCATACACTA+TGG | + | chr4.4:72092258-72092277 | None:intergenic | 45.0% | |
GAAGGACATTGGTAGACGTT+TGG | - | chr4.4:72092562-72092581 | MS.gene48719:CDS | 45.0% | |
! | CTTGACACAAAGGGTTCTGA+AGG | - | chr4.4:72092388-72092407 | MS.gene48719:CDS | 45.0% |
!! | ATCTCAGGTTGAGGCTCATA+AGG | + | chr4.4:72092272-72092291 | None:intergenic | 45.0% |
!! | TCTCAGGTTGAGGCTCATAA+GGG | + | chr4.4:72092271-72092290 | None:intergenic | 45.0% |
GAAGCCTGTGCCATAGTGTA+TGG | - | chr4.4:72092245-72092264 | MS.gene48719:CDS | 50.0% | |
GGACATTGGTAGACGTTTGG+CGG | - | chr4.4:72092565-72092584 | MS.gene48719:CDS | 50.0% | |
TCTGGTGAAGGCCAAATCTC+AGG | + | chr4.4:72092287-72092306 | None:intergenic | 50.0% | |
! | AGATTTGGCCTTCACCAGAG+GGG | - | chr4.4:72092288-72092307 | MS.gene48719:CDS | 50.0% |
! | GAAGGCCAAATCTCAGGTTG+AGG | + | chr4.4:72092281-72092300 | None:intergenic | 50.0% |
! | GAGATTTGGCCTTCACCAGA+GGG | - | chr4.4:72092287-72092306 | MS.gene48719:CDS | 50.0% |
! | TGAGATTTGGCCTTCACCAG+AGG | - | chr4.4:72092286-72092305 | MS.gene48719:CDS | 50.0% |
!! | TTGATGGACTCAATGGTGGC+TGG | - | chr4.4:72092701-72092720 | MS.gene48719:CDS | 50.0% |
ACAGGCTTCAATGCCGCAGA+GGG | + | chr4.4:72092234-72092253 | None:intergenic | 55.0% | |
AGGGCCATACACTATGGCAC+AGG | + | chr4.4:72092252-72092271 | None:intergenic | 55.0% | |
GCTGAACTTAGCACCCTCTG+CGG | - | chr4.4:72092218-72092237 | MS.gene48719:CDS | 55.0% | |
GTGCAAGAGACAGTGCCCTT+TGG | - | chr4.4:72092728-72092747 | MS.gene48719:CDS | 55.0% | |
TCTTCGCTCCTAGATGCTGC+TGG | + | chr4.4:72092611-72092630 | None:intergenic | 55.0% | |
! | GATTTGGCCTTCACCAGAGG+GGG | - | chr4.4:72092289-72092308 | MS.gene48719:CDS | 55.0% |
AGCACAGATTGGACCCCCTC+TGG | + | chr4.4:72092305-72092324 | None:intergenic | 60.0% | |
CACAGGCTTCAATGCCGCAG+AGG | + | chr4.4:72092235-72092254 | None:intergenic | 60.0% | |
CACCACCTCCAGCAGCATCT+AGG | - | chr4.4:72092600-72092619 | MS.gene48719:CDS | 60.0% | |
CTAGATGCTGCTGGAGGTGG+TGG | + | chr4.4:72092602-72092621 | None:intergenic | 60.0% | |
CTCCTAGATGCTGCTGGAGG+TGG | + | chr4.4:72092605-72092624 | None:intergenic | 60.0% | |
GATTGGACCCCCTCTGGTGA+AGG | + | chr4.4:72092299-72092318 | None:intergenic | 60.0% | |
TCGCTCCTAGATGCTGCTGG+AGG | + | chr4.4:72092608-72092627 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 72092122 | 72092790 | 72092122 | ID=MS.gene48719 |
chr4.4 | mRNA | 72092122 | 72092790 | 72092122 | ID=MS.gene48719.t1;Parent=MS.gene48719 |
chr4.4 | exon | 72092122 | 72092790 | 72092122 | ID=MS.gene48719.t1.exon1;Parent=MS.gene48719.t1 |
chr4.4 | CDS | 72092122 | 72092790 | 72092122 | ID=cds.MS.gene48719.t1;Parent=MS.gene48719.t1 |
Gene Sequence |
Protein sequence |