Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48720.t1 | XP_003605474.1 | 72.1 | 229 | 57 | 2 | 1 | 222 | 1 | 229 | 3.80E-81 | 311.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48720.t1 | Q9FJK3 | 55.8 | 154 | 67 | 1 | 1 | 154 | 1 | 153 | 2.4e-39 | 163.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48720.t1 | G7JM29 | 72.1 | 229 | 57 | 2 | 1 | 222 | 1 | 229 | 2.7e-81 | 311.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene48720.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48720.t1 | MTR_4g031910 | 72.650 | 234 | 47 | 2 | 1 | 222 | 1 | 229 | 7.08e-114 | 325 |
MS.gene48720.t1 | MTR_4g032290 | 68.852 | 244 | 41 | 2 | 1 | 222 | 1 | 231 | 5.95e-109 | 312 |
MS.gene48720.t1 | MTR_4g032620 | 58.442 | 231 | 87 | 1 | 1 | 222 | 1 | 231 | 5.35e-95 | 277 |
MS.gene48720.t1 | MTR_8g036130 | 56.680 | 247 | 82 | 4 | 1 | 222 | 1 | 247 | 4.71e-88 | 260 |
MS.gene48720.t1 | MTR_4g032260 | 79.618 | 157 | 32 | 0 | 1 | 157 | 1 | 157 | 4.55e-80 | 236 |
MS.gene48720.t1 | MTR_3g065100 | 49.378 | 241 | 97 | 4 | 1 | 219 | 1 | 238 | 1.96e-65 | 202 |
MS.gene48720.t1 | MTR_3g466980 | 45.690 | 232 | 101 | 5 | 1 | 218 | 1 | 221 | 1.28e-63 | 197 |
MS.gene48720.t1 | MTR_2g035610 | 72.951 | 122 | 33 | 0 | 1 | 122 | 1 | 122 | 8.71e-52 | 164 |
MS.gene48720.t1 | MTR_4g032270 | 56.204 | 137 | 45 | 2 | 94 | 222 | 2 | 131 | 1.66e-46 | 150 |
MS.gene48720.t1 | MTR_5g075380 | 47.742 | 155 | 80 | 1 | 1 | 155 | 1 | 154 | 5.49e-46 | 150 |
MS.gene48720.t1 | MTR_4g063790 | 45.455 | 154 | 84 | 0 | 1 | 154 | 1 | 154 | 1.46e-45 | 149 |
MS.gene48720.t1 | MTR_3g466830 | 48.344 | 151 | 77 | 1 | 3 | 153 | 2 | 151 | 4.09e-44 | 145 |
MS.gene48720.t1 | MTR_3g467080 | 43.590 | 156 | 88 | 0 | 1 | 156 | 1 | 156 | 2.32e-43 | 143 |
MS.gene48720.t1 | MTR_3g031100 | 35.268 | 224 | 133 | 4 | 1 | 219 | 1 | 217 | 5.64e-43 | 145 |
MS.gene48720.t1 | MTR_5g047580 | 46.154 | 156 | 82 | 2 | 1 | 156 | 1 | 154 | 6.96e-41 | 137 |
MS.gene48720.t1 | MTR_2g016210 | 39.560 | 182 | 108 | 2 | 1 | 180 | 1 | 182 | 8.38e-41 | 139 |
MS.gene48720.t1 | MTR_3g466890 | 45.395 | 152 | 82 | 1 | 3 | 154 | 2 | 152 | 4.16e-39 | 132 |
MS.gene48720.t1 | MTR_1g077390 | 42.308 | 156 | 88 | 2 | 1 | 156 | 1 | 154 | 2.18e-37 | 128 |
MS.gene48720.t1 | MTR_1g090783 | 42.208 | 154 | 87 | 2 | 3 | 156 | 2 | 153 | 1.21e-35 | 124 |
MS.gene48720.t1 | MTR_3g465410 | 44.444 | 126 | 70 | 0 | 29 | 154 | 1 | 126 | 6.03e-35 | 121 |
MS.gene48720.t1 | MTR_1g077320 | 44.231 | 156 | 85 | 2 | 1 | 156 | 1 | 154 | 8.32e-35 | 121 |
MS.gene48720.t1 | MTR_7g011950 | 43.590 | 156 | 86 | 2 | 1 | 156 | 1 | 154 | 2.53e-34 | 120 |
MS.gene48720.t1 | MTR_4g028720 | 44.231 | 156 | 85 | 2 | 1 | 156 | 1 | 154 | 4.02e-34 | 120 |
MS.gene48720.t1 | MTR_1g084950 | 44.872 | 156 | 84 | 2 | 1 | 156 | 1 | 154 | 1.82e-33 | 118 |
MS.gene48720.t1 | MTR_1g077300 | 43.590 | 156 | 84 | 2 | 1 | 156 | 1 | 152 | 2.71e-32 | 115 |
MS.gene48720.t1 | MTR_1g090710 | 38.312 | 154 | 94 | 1 | 1 | 154 | 1 | 153 | 6.26e-32 | 114 |
MS.gene48720.t1 | MTR_1g090697 | 40.000 | 150 | 88 | 2 | 1 | 150 | 1 | 148 | 2.66e-31 | 112 |
MS.gene48720.t1 | MTR_4g028800 | 75.714 | 70 | 15 | 1 | 1 | 70 | 1 | 68 | 4.99e-30 | 106 |
MS.gene48720.t1 | MTR_3g031240 | 33.974 | 156 | 103 | 0 | 1 | 156 | 1 | 156 | 3.15e-29 | 108 |
MS.gene48720.t1 | MTR_7g055800 | 49.573 | 117 | 31 | 2 | 1 | 117 | 1 | 89 | 9.51e-28 | 101 |
MS.gene48720.t1 | MTR_3g466900 | 40.650 | 123 | 72 | 1 | 32 | 154 | 2 | 123 | 4.97e-27 | 100 |
MS.gene48720.t1 | MTR_2g035580 | 38.217 | 157 | 96 | 1 | 1 | 157 | 1 | 156 | 4.46e-26 | 99.4 |
MS.gene48720.t1 | MTR_7g055790 | 52.252 | 111 | 35 | 1 | 1 | 111 | 59 | 151 | 5.93e-26 | 98.6 |
MS.gene48720.t1 | MTR_3g466930 | 38.211 | 123 | 75 | 1 | 32 | 154 | 2 | 123 | 1.24e-24 | 94.7 |
MS.gene48720.t1 | MTR_7g106510 | 38.583 | 127 | 78 | 0 | 3 | 129 | 6 | 132 | 2.01e-23 | 97.8 |
MS.gene48720.t1 | MTR_4g019670 | 39.370 | 127 | 77 | 0 | 3 | 129 | 6 | 132 | 3.42e-23 | 97.4 |
MS.gene48720.t1 | MTR_5g047560 | 36.538 | 156 | 81 | 3 | 1 | 156 | 1 | 138 | 3.68e-23 | 91.3 |
MS.gene48720.t1 | MTR_7g055940 | 48.113 | 106 | 27 | 2 | 1 | 106 | 1 | 78 | 1.41e-22 | 87.8 |
MS.gene48720.t1 | MTR_3g093900 | 30.986 | 142 | 98 | 0 | 3 | 144 | 6 | 147 | 1.59e-20 | 89.7 |
MS.gene48720.t1 | MTR_2g035590 | 58.025 | 81 | 34 | 0 | 74 | 154 | 1 | 81 | 1.62e-19 | 80.5 |
MS.gene48720.t1 | MTR_1g114730 | 31.858 | 113 | 70 | 3 | 1 | 107 | 1 | 112 | 1.90e-13 | 68.6 |
MS.gene48720.t1 | MTR_6g018920 | 32.743 | 113 | 69 | 4 | 1 | 107 | 1 | 112 | 3.04e-13 | 68.2 |
MS.gene48720.t1 | MTR_6g005450 | 33.628 | 113 | 68 | 4 | 1 | 107 | 1 | 112 | 1.32e-12 | 66.2 |
MS.gene48720.t1 | MTR_4g084780 | 38.739 | 111 | 52 | 2 | 74 | 168 | 1 | 111 | 1.30e-11 | 60.8 |
MS.gene48720.t1 | MTR_6g005440 | 35.398 | 113 | 66 | 3 | 1 | 107 | 1 | 112 | 2.33e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48720.t1 | AT5G48670 | 55.844 | 154 | 67 | 1 | 1 | 154 | 1 | 153 | 7.38e-47 | 157 |
MS.gene48720.t1 | AT1G65330 | 42.246 | 187 | 94 | 3 | 3 | 176 | 2 | 187 | 4.56e-41 | 141 |
MS.gene48720.t1 | AT1G65300 | 41.436 | 181 | 97 | 2 | 3 | 175 | 2 | 181 | 8.55e-41 | 140 |
MS.gene48720.t1 | AT5G26630 | 44.503 | 191 | 95 | 2 | 1 | 181 | 1 | 190 | 7.84e-40 | 136 |
MS.gene48720.t1 | AT5G26650 | 36.667 | 210 | 114 | 4 | 5 | 204 | 3 | 203 | 7.82e-36 | 130 |
MS.gene48720.t1 | AT5G27960 | 40.476 | 168 | 89 | 3 | 5 | 162 | 3 | 169 | 3.09e-35 | 127 |
MS.gene48720.t1 | AT1G31630 | 36.905 | 168 | 95 | 3 | 3 | 161 | 2 | 167 | 1.47e-34 | 126 |
MS.gene48720.t1 | AT1G31640 | 39.735 | 151 | 89 | 2 | 3 | 153 | 2 | 150 | 7.00e-33 | 124 |
MS.gene48720.t1 | AT3G05860 | 37.975 | 158 | 97 | 1 | 1 | 158 | 1 | 157 | 3.21e-31 | 114 |
MS.gene48720.t1 | AT3G05860 | 37.975 | 158 | 97 | 1 | 1 | 158 | 1 | 157 | 5.05e-31 | 114 |
MS.gene48720.t1 | AT3G05860 | 37.975 | 158 | 97 | 1 | 1 | 158 | 1 | 157 | 5.13e-31 | 115 |
MS.gene48720.t1 | AT5G27810 | 55.914 | 93 | 41 | 0 | 29 | 121 | 1 | 93 | 8.82e-31 | 110 |
MS.gene48720.t1 | AT2G28700 | 37.423 | 163 | 97 | 2 | 1 | 161 | 1 | 160 | 1.60e-29 | 112 |
MS.gene48720.t1 | AT1G22590 | 32.099 | 162 | 106 | 1 | 1 | 162 | 1 | 158 | 2.04e-26 | 100 |
MS.gene48720.t1 | AT5G26580 | 34.416 | 154 | 86 | 2 | 1 | 154 | 1 | 139 | 1.17e-23 | 97.1 |
MS.gene48720.t1 | AT5G06500 | 35.032 | 157 | 100 | 2 | 1 | 157 | 1 | 155 | 1.27e-21 | 89.7 |
MS.gene48720.t1 | AT2G40210 | 37.209 | 129 | 80 | 1 | 1 | 129 | 1 | 128 | 1.74e-16 | 77.4 |
MS.gene48720.t1 | AT5G58890 | 37.795 | 127 | 68 | 5 | 6 | 123 | 6 | 130 | 2.30e-15 | 73.6 |
MS.gene48720.t1 | AT5G55690 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 1.43e-12 | 65.9 |
MS.gene48720.t1 | AT5G55690 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 1.43e-12 | 65.9 |
MS.gene48720.t1 | AT5G27090 | 34.444 | 90 | 58 | 1 | 7 | 95 | 23 | 112 | 7.11e-11 | 59.7 |
MS.gene48720.t1 | AT5G27944 | 39.726 | 73 | 43 | 1 | 24 | 95 | 41 | 113 | 9.60e-11 | 60.1 |
Find 60 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAACAAAGAAAAGAAAAT+AGG | 0.231520 | 4.4:-72108398 | MS.gene48720:CDS |
CCCTTTGGTGAGATCAATTA+TGG | 0.234667 | 4.4:-72108081 | MS.gene48720:CDS |
TACCAATGTCCTTCAGATTA+TGG | 0.267347 | 4.4:+72108271 | None:intergenic |
ATAATTTCATCATCATTAAT+AGG | 0.285530 | 4.4:+72108159 | None:intergenic |
GTGAGATCAATTATGGAGTT+TGG | 0.309548 | 4.4:-72108074 | MS.gene48720:CDS |
AACAAAGGGTCTATTGAAAA+AGG | 0.314581 | 4.4:-72108631 | MS.gene48720:CDS |
AGCATCTAGGAGTGAGGAAA+TGG | 0.344298 | 4.4:-72108211 | MS.gene48720:CDS |
ATGAGCCTCAACCTGAGATT+TGG | 0.345571 | 4.4:-72108551 | MS.gene48720:CDS |
ATCCTTCAAGGTAGTAAATC+AGG | 0.372648 | 4.4:+72108051 | None:intergenic |
TATGCAAAGTCAATTATTGA+TGG | 0.385590 | 4.4:-72108139 | MS.gene48720:CDS |
CTAGATGCTGTTGGAGGTGG+TGG | 0.417295 | 4.4:+72108225 | None:intergenic |
GAAACAAAGAAAAGAAAATA+GGG | 0.419680 | 4.4:-72108397 | MS.gene48720:CDS |
GGCCTGATTTACTACCTTGA+AGG | 0.422090 | 4.4:-72108053 | None:intergenic |
GAAGGACATTGGTAGACGTT+TGG | 0.439260 | 4.4:-72108262 | MS.gene48720:CDS |
AGTGAGGAAATGGGAATTGT+GGG | 0.443118 | 4.4:-72108201 | MS.gene48720:CDS |
TTGTGGGTCATGGCCATGTT+GGG | 0.452922 | 4.4:-72108185 | MS.gene48720:CDS |
CACAACCATGGCTAGAAGTA+AGG | 0.457305 | 4.4:-72108709 | None:intergenic |
CTCATAAGAGCCATACACTA+TGG | 0.467809 | 4.4:+72108569 | None:intergenic |
ATTGTGGGTCATGGCCATGT+TGG | 0.468248 | 4.4:-72108186 | MS.gene48720:CDS |
TCTGATGAAGGCCAAATCTC+AGG | 0.474702 | 4.4:+72108540 | None:intergenic |
CTCCTAGATGCTGTTGGAGG+TGG | 0.476689 | 4.4:+72108222 | None:intergenic |
TCAATTATTGATGGACTCAA+TGG | 0.482426 | 4.4:-72108130 | MS.gene48720:CDS |
TTGATTTGAGTTATCTTACT+TGG | 0.482489 | 4.4:-72108302 | MS.gene48720:CDS |
TCCTCACTCCTAGATGCTGT+TGG | 0.486555 | 4.4:+72108216 | None:intergenic |
CTTGACACAAAGGATTCTGA+AGG | 0.491635 | 4.4:-72108436 | MS.gene48720:CDS |
TGCAGCATCATTGACAATGA+AGG | 0.502295 | 4.4:+72108677 | None:intergenic |
AAGAAAAGAAAATAGGGAGC+AGG | 0.506419 | 4.4:-72108391 | MS.gene48720:CDS |
TTTGTGTCAAGAAAGTCTCT+TGG | 0.512375 | 4.4:+72108448 | None:intergenic |
GATGCTGTTGGAGGTGGTGG+TGG | 0.513228 | 4.4:+72108228 | None:intergenic |
GAGTGAGGAAATGGGAATTG+TGG | 0.516317 | 4.4:-72108202 | MS.gene48720:CDS |
GGACATTGGTAGACGTTTGG+CGG | 0.524285 | 4.4:-72108259 | MS.gene48720:CDS |
GAGATTTGGCCTTCATCAGA+GGG | 0.524738 | 4.4:-72108537 | MS.gene48720:CDS |
TCACTCCTAGATGCTGTTGG+AGG | 0.527908 | 4.4:+72108219 | None:intergenic |
CACCACCTCCAACAGCATCT+AGG | 0.540352 | 4.4:-72108224 | MS.gene48720:CDS |
ATGTCTCATTGCCTCAATGA+AGG | 0.543320 | 4.4:-72108354 | MS.gene48720:CDS |
GCATCTAGGAGTGAGGAAAT+GGG | 0.544227 | 4.4:-72108210 | MS.gene48720:CDS |
CCATAATTGATCTCACCAAA+GGG | 0.558369 | 4.4:+72108081 | None:intergenic |
GAAGCCTGTGCCATAGTGTA+TGG | 0.560968 | 4.4:-72108579 | MS.gene48720:CDS |
GAAGGCCAAATCTCAGGTTG+AGG | 0.568672 | 4.4:+72108546 | None:intergenic |
GTTGATTGACCATAATCTGA+AGG | 0.571124 | 4.4:-72108280 | MS.gene48720:CDS |
TTTAACCTTACTTCTAGCCA+TGG | 0.572129 | 4.4:+72108704 | None:intergenic |
TCCATAATTGATCTCACCAA+AGG | 0.580970 | 4.4:+72108080 | None:intergenic |
GTGCACGAGACAGTGCCCTT+TGG | 0.582311 | 4.4:-72108096 | MS.gene48720:CDS |
AAGAGACTTTCTTGACACAA+AGG | 0.587821 | 4.4:-72108446 | MS.gene48720:CDS |
CATTAATAGGTATCCCAACA+TGG | 0.589301 | 4.4:+72108172 | None:intergenic |
TGAGATTTGGCCTTCATCAG+AGG | 0.593649 | 4.4:-72108538 | MS.gene48720:CDS |
GACCATAATCTGAAGGACAT+TGG | 0.595565 | 4.4:-72108273 | MS.gene48720:CDS |
ACAGGCTTCAATGCCACAGA+GGG | 0.601811 | 4.4:+72108593 | None:intergenic |
TTGATGGACTCAATGGTGGC+TGG | 0.607204 | 4.4:-72108123 | MS.gene48720:CDS |
GATTTGGCCTTCATCAGAGG+GGG | 0.615187 | 4.4:-72108535 | MS.gene48720:CDS |
GAAATGGGAATTGTGGGTCA+TGG | 0.616732 | 4.4:-72108195 | MS.gene48720:CDS |
TCCAACAGCATCTAGGAGTG+AGG | 0.643310 | 4.4:-72108217 | MS.gene48720:CDS |
GCACAACTCTACCTTCATTG+AGG | 0.651806 | 4.4:+72108343 | None:intergenic |
TCATTGTCAATGATGCTGCA+AGG | 0.652548 | 4.4:-72108674 | MS.gene48720:CDS |
AGAGCCATACACTATGGCAC+AGG | 0.656790 | 4.4:+72108575 | None:intergenic |
ATTATTGATGGACTCAATGG+TGG | 0.666274 | 4.4:-72108127 | MS.gene48720:CDS |
AGATTTGGCCTTCATCAGAG+GGG | 0.672121 | 4.4:-72108536 | MS.gene48720:CDS |
GCTGAACTTAGCACCCTCTG+TGG | 0.677042 | 4.4:-72108606 | MS.gene48720:CDS |
TGTGCACGACAATATGTCAA+CGG | 0.688304 | 4.4:-72108325 | MS.gene48720:CDS |
CACAGGCTTCAATGCCACAG+AGG | 0.696692 | 4.4:+72108592 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATTTCATCATCATTAAT+AGG | + | chr4.4:72108602-72108621 | None:intergenic | 15.0% |
!! | AACATACAAAAAAAGAACAA+AGG | - | chr4.4:72108112-72108131 | MS.gene48720:CDS | 20.0% |
!! | ACATACAAAAAAAGAACAAA+GGG | - | chr4.4:72108113-72108132 | MS.gene48720:CDS | 20.0% |
!! | AGAAACAAAGAAAAGAAAAT+AGG | - | chr4.4:72108360-72108379 | MS.gene48720:CDS | 20.0% |
!! | GAAACAAAGAAAAGAAAATA+GGG | - | chr4.4:72108361-72108380 | MS.gene48720:CDS | 20.0% |
! | TATGCAAAGTCAATTATTGA+TGG | - | chr4.4:72108619-72108638 | MS.gene48720:CDS | 25.0% |
!! | TTGATTTGAGTTATCTTACT+TGG | - | chr4.4:72108456-72108475 | MS.gene48720:CDS | 25.0% |
AACAAAGGGTCTATTGAAAA+AGG | - | chr4.4:72108127-72108146 | MS.gene48720:CDS | 30.0% | |
!! | TCAATTATTGATGGACTCAA+TGG | - | chr4.4:72108628-72108647 | MS.gene48720:CDS | 30.0% |
AAGAAAAGAAAATAGGGAGC+AGG | - | chr4.4:72108367-72108386 | MS.gene48720:CDS | 35.0% | |
AAGAGACTTTCTTGACACAA+AGG | - | chr4.4:72108312-72108331 | MS.gene48720:CDS | 35.0% | |
CATTAATAGGTATCCCAACA+TGG | + | chr4.4:72108589-72108608 | None:intergenic | 35.0% | |
CCATAATTGATCTCACCAAA+GGG | + | chr4.4:72108680-72108699 | None:intergenic | 35.0% | |
GTGAGATCAATTATGGAGTT+TGG | - | chr4.4:72108684-72108703 | MS.gene48720:CDS | 35.0% | |
GTTGATTGACCATAATCTGA+AGG | - | chr4.4:72108478-72108497 | MS.gene48720:CDS | 35.0% | |
TACCAATGTCCTTCAGATTA+TGG | + | chr4.4:72108490-72108509 | None:intergenic | 35.0% | |
TCCATAATTGATCTCACCAA+AGG | + | chr4.4:72108681-72108700 | None:intergenic | 35.0% | |
TTTGTGTCAAGAAAGTCTCT+TGG | + | chr4.4:72108313-72108332 | None:intergenic | 35.0% | |
!! | ATTATTGATGGACTCAATGG+TGG | - | chr4.4:72108631-72108650 | MS.gene48720:CDS | 35.0% |
!! | TGAATTTTGAGAGCACAGAT+TGG | + | chr4.4:72108250-72108269 | None:intergenic | 35.0% |
AGTGAGGAAATGGGAATTGT+GGG | - | chr4.4:72108557-72108576 | MS.gene48720:CDS | 40.0% | |
ATGTCTCATTGCCTCAATGA+AGG | - | chr4.4:72108404-72108423 | MS.gene48720:CDS | 40.0% | |
CCCTTTGGTGAGATCAATTA+TGG | - | chr4.4:72108677-72108696 | MS.gene48720:CDS | 40.0% | |
CTCATAAGAGCCATACACTA+TGG | + | chr4.4:72108192-72108211 | None:intergenic | 40.0% | |
CTTGACACAAAGGATTCTGA+AGG | - | chr4.4:72108322-72108341 | MS.gene48720:CDS | 40.0% | |
GACCATAATCTGAAGGACAT+TGG | - | chr4.4:72108485-72108504 | MS.gene48720:CDS | 40.0% | |
TCATTGTCAATGATGCTGCA+AGG | - | chr4.4:72108084-72108103 | MS.gene48720:CDS | 40.0% | |
TGCAGCATCATTGACAATGA+AGG | + | chr4.4:72108084-72108103 | None:intergenic | 40.0% | |
TGTGCACGACAATATGTCAA+CGG | - | chr4.4:72108433-72108452 | MS.gene48720:CDS | 40.0% | |
AGCATCTAGGAGTGAGGAAA+TGG | - | chr4.4:72108547-72108566 | MS.gene48720:CDS | 45.0% | |
ATGAGCCTCAACCTGAGATT+TGG | - | chr4.4:72108207-72108226 | MS.gene48720:CDS | 45.0% | |
GAAATGGGAATTGTGGGTCA+TGG | - | chr4.4:72108563-72108582 | MS.gene48720:CDS | 45.0% | |
GAAGGACATTGGTAGACGTT+TGG | - | chr4.4:72108496-72108515 | MS.gene48720:CDS | 45.0% | |
GAGTGAGGAAATGGGAATTG+TGG | - | chr4.4:72108556-72108575 | MS.gene48720:CDS | 45.0% | |
GCACAACTCTACCTTCATTG+AGG | + | chr4.4:72108418-72108437 | None:intergenic | 45.0% | |
GCATCTAGGAGTGAGGAAAT+GGG | - | chr4.4:72108548-72108567 | MS.gene48720:CDS | 45.0% | |
TCTGATGAAGGCCAAATCTC+AGG | + | chr4.4:72108221-72108240 | None:intergenic | 45.0% | |
! | AGATTTGGCCTTCATCAGAG+GGG | - | chr4.4:72108222-72108241 | MS.gene48720:CDS | 45.0% |
! | GAGATTTGGCCTTCATCAGA+GGG | - | chr4.4:72108221-72108240 | MS.gene48720:CDS | 45.0% |
! | TGAGATTTGGCCTTCATCAG+AGG | - | chr4.4:72108220-72108239 | MS.gene48720:CDS | 45.0% |
ACAGGCTTCAATGCCACAGA+GGG | + | chr4.4:72108168-72108187 | None:intergenic | 50.0% | |
AGAGCCATACACTATGGCAC+AGG | + | chr4.4:72108186-72108205 | None:intergenic | 50.0% | |
ATTGTGGGTCATGGCCATGT+TGG | - | chr4.4:72108572-72108591 | MS.gene48720:CDS | 50.0% | |
GAAGCCTGTGCCATAGTGTA+TGG | - | chr4.4:72108179-72108198 | MS.gene48720:CDS | 50.0% | |
GGACATTGGTAGACGTTTGG+CGG | - | chr4.4:72108499-72108518 | MS.gene48720:CDS | 50.0% | |
TCACTCCTAGATGCTGTTGG+AGG | + | chr4.4:72108542-72108561 | None:intergenic | 50.0% | |
TCCAACAGCATCTAGGAGTG+AGG | - | chr4.4:72108541-72108560 | MS.gene48720:CDS | 50.0% | |
TCCTCACTCCTAGATGCTGT+TGG | + | chr4.4:72108545-72108564 | None:intergenic | 50.0% | |
TTGTGGGTCATGGCCATGTT+GGG | - | chr4.4:72108573-72108592 | MS.gene48720:CDS | 50.0% | |
! | GAAGGCCAAATCTCAGGTTG+AGG | + | chr4.4:72108215-72108234 | None:intergenic | 50.0% |
! | GATTTGGCCTTCATCAGAGG+GGG | - | chr4.4:72108223-72108242 | MS.gene48720:CDS | 50.0% |
!! | TTGATGGACTCAATGGTGGC+TGG | - | chr4.4:72108635-72108654 | MS.gene48720:CDS | 50.0% |
CACAGGCTTCAATGCCACAG+AGG | + | chr4.4:72108169-72108188 | None:intergenic | 55.0% | |
CACCACCTCCAACAGCATCT+AGG | - | chr4.4:72108534-72108553 | MS.gene48720:CDS | 55.0% | |
CTAGATGCTGTTGGAGGTGG+TGG | + | chr4.4:72108536-72108555 | None:intergenic | 55.0% | |
CTCCTAGATGCTGTTGGAGG+TGG | + | chr4.4:72108539-72108558 | None:intergenic | 55.0% | |
GATTGGACCCCCTCTGATGA+AGG | + | chr4.4:72108233-72108252 | None:intergenic | 55.0% | |
GCTGAACTTAGCACCCTCTG+TGG | - | chr4.4:72108152-72108171 | MS.gene48720:CDS | 55.0% | |
GTGCACGAGACAGTGCCCTT+TGG | - | chr4.4:72108662-72108681 | MS.gene48720:CDS | 60.0% | |
! | GATGCTGTTGGAGGTGGTGG+TGG | + | chr4.4:72108533-72108552 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 72108056 | 72108724 | 72108056 | ID=MS.gene48720 |
chr4.4 | mRNA | 72108056 | 72108724 | 72108056 | ID=MS.gene48720.t1;Parent=MS.gene48720 |
chr4.4 | exon | 72108056 | 72108724 | 72108056 | ID=MS.gene48720.t1.exon1;Parent=MS.gene48720.t1 |
chr4.4 | CDS | 72108056 | 72108724 | 72108056 | ID=cds.MS.gene48720.t1;Parent=MS.gene48720.t1 |
Gene Sequence |
Protein sequence |