Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48751.t1 | XP_024632961.1 | 94.8 | 538 | 20 | 1 | 1 | 530 | 1 | 538 | 1.60E-285 | 991.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48751.t1 | Q9SZL8 | 28.0 | 468 | 314 | 8 | 50 | 515 | 72 | 518 | 9.2e-56 | 219.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48751.t1 | D3YBB9 | 84.4 | 487 | 76 | 0 | 44 | 530 | 76 | 562 | 3.8e-244 | 853.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene48751.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48751.t1 | MTR_0558s0020 | 88.746 | 311 | 20 | 1 | 1 | 311 | 1 | 296 | 0.0 | 575 |
| MS.gene48751.t1 | MTR_1g083640 | 93.357 | 286 | 19 | 0 | 1 | 286 | 1 | 286 | 0.0 | 563 |
| MS.gene48751.t1 | MTR_8g446020 | 76.849 | 311 | 17 | 2 | 1 | 311 | 1 | 256 | 2.30e-165 | 470 |
| MS.gene48751.t1 | MTR_2g014100 | 87.747 | 253 | 22 | 2 | 1 | 252 | 1 | 245 | 2.38e-158 | 452 |
| MS.gene48751.t1 | MTR_6g090505 | 88.186 | 237 | 28 | 0 | 81 | 317 | 1 | 237 | 4.04e-151 | 438 |
| MS.gene48751.t1 | MTR_6g090505 | 64.815 | 108 | 11 | 2 | 406 | 511 | 224 | 306 | 7.13e-34 | 132 |
| MS.gene48751.t1 | MTR_0337s0040 | 73.091 | 275 | 20 | 2 | 1 | 275 | 1 | 221 | 2.52e-133 | 387 |
| MS.gene48751.t1 | MTR_3g008240 | 83.486 | 218 | 21 | 1 | 1 | 218 | 1 | 203 | 1.79e-127 | 372 |
| MS.gene48751.t1 | MTR_4g040430 | 83.945 | 218 | 15 | 2 | 1 | 218 | 1 | 198 | 5.51e-127 | 370 |
| MS.gene48751.t1 | MTR_5g071590 | 86.413 | 184 | 22 | 1 | 1 | 184 | 1 | 181 | 8.18e-114 | 336 |
| MS.gene48751.t1 | MTR_1g055240 | 93.662 | 142 | 9 | 0 | 107 | 248 | 3 | 144 | 2.48e-93 | 282 |
| MS.gene48751.t1 | MTR_0019s0290 | 88.235 | 153 | 15 | 1 | 100 | 249 | 8 | 160 | 1.33e-92 | 281 |
| MS.gene48751.t1 | MTR_1281s0010 | 95.413 | 109 | 5 | 0 | 35 | 143 | 1 | 109 | 1.88e-69 | 219 |
| MS.gene48751.t1 | MTR_6g051425 | 30.539 | 334 | 196 | 7 | 56 | 368 | 22 | 340 | 4.16e-40 | 149 |
| MS.gene48751.t1 | MTR_8g046060 | 79.167 | 96 | 11 | 2 | 1 | 95 | 91 | 178 | 7.87e-38 | 139 |
| MS.gene48751.t1 | MTR_0337s0060 | 69.307 | 101 | 19 | 1 | 463 | 563 | 21 | 109 | 5.85e-37 | 137 |
| MS.gene48751.t1 | MTR_4g008820 | 76.842 | 95 | 7 | 1 | 1 | 95 | 125 | 204 | 1.58e-35 | 142 |
| MS.gene48751.t1 | MTR_1g070355 | 24.919 | 309 | 207 | 7 | 3 | 307 | 24 | 311 | 7.74e-21 | 96.7 |
| MS.gene48751.t1 | MTR_0337s0050 | 80.556 | 36 | 7 | 0 | 275 | 310 | 14 | 49 | 3.81e-14 | 68.2 |
| MS.gene48751.t1 | MTR_0402s0040 | 25.946 | 185 | 118 | 4 | 65 | 249 | 40 | 205 | 1.14e-13 | 73.9 |
| MS.gene48751.t1 | MTR_1g013060 | 29.680 | 219 | 135 | 8 | 56 | 272 | 29 | 230 | 3.64e-13 | 69.7 |
| MS.gene48751.t1 | MTR_4g035820 | 23.019 | 265 | 179 | 5 | 56 | 315 | 80 | 324 | 6.61e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48751.t1 | AT4G38180 | 27.966 | 472 | 309 | 8 | 50 | 515 | 72 | 518 | 1.27e-59 | 212 |
| MS.gene48751.t1 | AT3G06250 | 25.941 | 478 | 284 | 10 | 39 | 514 | 178 | 587 | 4.19e-43 | 164 |
| MS.gene48751.t1 | AT3G06250 | 25.941 | 478 | 284 | 10 | 39 | 514 | 178 | 587 | 4.19e-43 | 164 |
| MS.gene48751.t1 | AT3G06250 | 25.941 | 478 | 284 | 10 | 39 | 514 | 178 | 587 | 4.19e-43 | 164 |
| MS.gene48751.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 3.19e-41 | 159 |
| MS.gene48751.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 3.19e-41 | 159 |
| MS.gene48751.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 3.19e-41 | 159 |
| MS.gene48751.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 3.19e-41 | 159 |
| MS.gene48751.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 3.19e-41 | 159 |
| MS.gene48751.t1 | AT1G76320 | 26.078 | 464 | 301 | 11 | 55 | 512 | 1 | 428 | 2.15e-40 | 156 |
| MS.gene48751.t1 | AT1G76320 | 26.078 | 464 | 301 | 11 | 55 | 512 | 1 | 428 | 3.96e-40 | 155 |
| MS.gene48751.t1 | AT1G76320 | 26.078 | 464 | 301 | 11 | 55 | 512 | 1 | 428 | 4.75e-40 | 155 |
| MS.gene48751.t1 | AT1G76320 | 26.078 | 464 | 301 | 11 | 55 | 512 | 1 | 428 | 4.75e-40 | 155 |
| MS.gene48751.t1 | AT1G10240 | 26.667 | 450 | 282 | 14 | 65 | 498 | 62 | 479 | 1.44e-39 | 154 |
| MS.gene48751.t1 | AT1G10240 | 26.667 | 450 | 282 | 14 | 65 | 498 | 62 | 479 | 1.44e-39 | 154 |
| MS.gene48751.t1 | AT5G18960 | 25.466 | 483 | 287 | 13 | 37 | 514 | 197 | 611 | 1.22e-37 | 149 |
| MS.gene48751.t1 | AT5G18960 | 25.466 | 483 | 287 | 13 | 37 | 514 | 197 | 611 | 1.22e-37 | 149 |
| MS.gene48751.t1 | AT5G28530 | 26.757 | 441 | 279 | 12 | 56 | 478 | 60 | 474 | 1.80e-37 | 147 |
| MS.gene48751.t1 | AT5G28530 | 26.984 | 441 | 278 | 12 | 56 | 478 | 60 | 474 | 2.08e-37 | 147 |
| MS.gene48751.t1 | AT5G28530 | 26.984 | 441 | 278 | 12 | 56 | 478 | 60 | 474 | 2.08e-37 | 147 |
| MS.gene48751.t1 | AT3G22170 | 22.661 | 481 | 331 | 8 | 48 | 523 | 67 | 511 | 8.05e-37 | 146 |
| MS.gene48751.t1 | AT3G22170 | 22.661 | 481 | 331 | 8 | 48 | 523 | 67 | 511 | 8.05e-37 | 146 |
| MS.gene48751.t1 | AT1G80010 | 26.337 | 505 | 321 | 16 | 57 | 538 | 101 | 577 | 1.32e-36 | 145 |
| MS.gene48751.t1 | AT4G38170 | 26.460 | 291 | 203 | 4 | 251 | 538 | 24 | 306 | 9.76e-36 | 141 |
| MS.gene48751.t1 | AT2G27110 | 26.923 | 312 | 220 | 3 | 229 | 538 | 36 | 341 | 1.27e-35 | 142 |
| MS.gene48751.t1 | AT2G27110 | 26.923 | 312 | 220 | 3 | 229 | 538 | 181 | 486 | 1.58e-35 | 142 |
| MS.gene48751.t1 | AT2G27110 | 26.923 | 312 | 220 | 3 | 229 | 538 | 181 | 486 | 1.58e-35 | 142 |
| MS.gene48751.t1 | AT4G19990 | 24.888 | 446 | 286 | 11 | 57 | 499 | 27 | 426 | 2.38e-32 | 132 |
| MS.gene48751.t1 | AT4G19990 | 24.888 | 446 | 286 | 11 | 57 | 499 | 27 | 426 | 2.66e-32 | 132 |
| MS.gene48751.t1 | AT4G19990 | 24.888 | 446 | 286 | 11 | 57 | 499 | 27 | 426 | 2.66e-32 | 132 |
| MS.gene48751.t1 | AT4G19990 | 24.888 | 446 | 286 | 11 | 57 | 499 | 41 | 440 | 2.77e-32 | 132 |
| MS.gene48751.t1 | AT4G19990 | 24.888 | 446 | 286 | 11 | 57 | 499 | 27 | 426 | 3.54e-32 | 132 |
| MS.gene48751.t1 | AT4G19990 | 24.888 | 446 | 286 | 11 | 57 | 499 | 27 | 426 | 3.54e-32 | 132 |
| MS.gene48751.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 4.26e-32 | 132 |
| MS.gene48751.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 5.41e-32 | 132 |
| MS.gene48751.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 5.41e-32 | 132 |
| MS.gene48751.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 5.62e-32 | 132 |
| MS.gene48751.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 5.62e-32 | 132 |
| MS.gene48751.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 5.62e-32 | 132 |
| MS.gene48751.t1 | AT2G32250 | 24.837 | 459 | 273 | 11 | 57 | 511 | 3 | 393 | 1.19e-31 | 130 |
| MS.gene48751.t1 | AT2G32250 | 24.837 | 459 | 273 | 11 | 57 | 511 | 3 | 393 | 1.35e-31 | 130 |
| MS.gene48751.t1 | AT4G19990 | 29.104 | 268 | 183 | 4 | 235 | 499 | 106 | 369 | 2.20e-30 | 126 |
| MS.gene48751.t1 | AT1G52520 | 23.937 | 447 | 299 | 10 | 57 | 500 | 91 | 499 | 3.27e-30 | 126 |
| MS.gene48751.t1 | AT5G28530 | 23.898 | 431 | 241 | 15 | 56 | 478 | 60 | 411 | 1.81e-18 | 89.4 |
| MS.gene48751.t1 | AT5G28530 | 23.898 | 431 | 241 | 15 | 56 | 478 | 60 | 411 | 2.00e-18 | 89.4 |
Find 72 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 4.4:+72910543 | MS.gene48751:CDS |
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 4.4:+72909953 | MS.gene48751:intron |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 4.4:+72910501 | MS.gene48751:CDS |
| AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 4.4:-72910080 | None:intergenic |
| TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 4.4:-72908894 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 4.4:-72909085 | None:intergenic |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 4.4:+72909401 | MS.gene48751:CDS |
| TTGAAGATCTTGGAGTTCTT+AGG | 0.331625 | 4.4:+72910961 | MS.gene48751:CDS |
| GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 4.4:-72910357 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 4.4:-72909451 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.357876 | 4.4:-72909966 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 4.4:+72909458 | MS.gene48751:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 4.4:+72909450 | MS.gene48751:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 4.4:+72909160 | MS.gene48751:CDS |
| GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 4.4:+72910326 | MS.gene48751:CDS |
| GTCTTATGAAGTTATGGGTC+CGG | 0.426568 | 4.4:+72909166 | MS.gene48751:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 4.4:+72908846 | MS.gene48751:CDS |
| AAAACACCTGGAAAACTATT+CGG | 0.428349 | 4.4:-72910139 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 4.4:+72909098 | MS.gene48751:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 4.4:-72908683 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 4.4:-72908684 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 4.4:+72908963 | MS.gene48751:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 4.4:+72910375 | MS.gene48751:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 4.4:+72909015 | MS.gene48751:CDS |
| ACATCAACTTCATCTGATAG+TGG | 0.459514 | 4.4:+72908558 | MS.gene48751:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 4.4:+72909128 | MS.gene48751:CDS |
| GACCGCATCAGCTGACTGTT+GGG | 0.463150 | 4.4:-72910595 | None:intergenic |
| ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 4.4:-72908906 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 4.4:+72909161 | MS.gene48751:CDS |
| TTCTCTGTGCCTCCAACTCC+CGG | 0.470259 | 4.4:-72909185 | None:intergenic |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 4.4:+72908883 | MS.gene48751:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 4.4:-72911018 | None:intergenic |
| GAAGTTATGGGTCCGGGAGT+TGG | 0.475623 | 4.4:+72909173 | MS.gene48751:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 4.4:+72910374 | MS.gene48751:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 4.4:-72909212 | None:intergenic |
| CATTCTTTGAAGACAATACC+TGG | 0.489494 | 4.4:+72911000 | MS.gene48751:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 4.4:+72910515 | MS.gene48751:CDS |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 4.4:+72908682 | MS.gene48751:CDS |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 4.4:-72908957 | None:intergenic |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 4.4:+72908980 | MS.gene48751:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 4.4:+72910534 | MS.gene48751:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 4.4:+72908812 | MS.gene48751:CDS |
| CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 4.4:-72909068 | None:intergenic |
| GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 4.4:-72908643 | None:intergenic |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 4.4:+72908750 | MS.gene48751:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 4.4:+72908857 | MS.gene48751:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 4.4:+72909022 | MS.gene48751:CDS |
| GTTATGGGTCCGGGAGTTGG+AGG | 0.531536 | 4.4:+72909176 | MS.gene48751:CDS |
| TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 4.4:+72910165 | MS.gene48751:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 4.4:-72909056 | None:intergenic |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 4.4:-72908682 | None:intergenic |
| TCTTATGAAGTTATGGGTCC+GGG | 0.539443 | 4.4:+72909167 | MS.gene48751:CDS |
| TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 4.4:-72908644 | None:intergenic |
| AATCGAACAAGTGAGTGGTC+TGG | 0.543268 | 4.4:-72910478 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 4.4:+72908858 | MS.gene48751:CDS |
| AACACAATAACGCACTAGCC+TGG | 0.552106 | 4.4:-72910111 | None:intergenic |
| AAGATCTTGGAGTTCTTAGG+TGG | 0.553166 | 4.4:+72910964 | MS.gene48751:CDS |
| GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 4.4:+72910329 | MS.gene48751:CDS |
| GGACCGCATCAGCTGACTGT+TGG | 0.570066 | 4.4:-72910596 | None:intergenic |
| ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 4.4:+72910593 | MS.gene48751:CDS |
| CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 4.4:+72910362 | MS.gene48751:CDS |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 4.4:+72909016 | MS.gene48751:CDS |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 4.4:+72908603 | MS.gene48751:CDS |
| GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 4.4:+72908905 | MS.gene48751:CDS |
| TTCACAAACTCAATAACCTG+TGG | 0.626760 | 4.4:-72908921 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 4.4:+72910516 | MS.gene48751:CDS |
| TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 4.4:-72910091 | None:intergenic |
| GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 4.4:-72910335 | None:intergenic |
| TAAAGAATCGAACAAGTGAG+TGG | 0.654901 | 4.4:-72910483 | None:intergenic |
| TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 4.4:-72908642 | None:intergenic |
| AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 4.4:-72910331 | None:intergenic |
| ACAGACGATTTATACAGACC+AGG | 0.720235 | 4.4:+72910093 | MS.gene48751:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATGAGTTAAATAATT+TGG | + | chr4.4:72910234-72910253 | MS.gene48751:CDS | 15.0% |
| !! | ACATACTTATTAGAATACTT+AGG | + | chr4.4:72909749-72909768 | MS.gene48751:intron | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | + | chr4.4:72909015-72909034 | MS.gene48751:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | - | chr4.4:72909329-72909348 | None:intergenic | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | + | chr4.4:72909016-72909035 | MS.gene48751:CDS | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr4.4:72908729-72908748 | MS.gene48751:CDS | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | + | chr4.4:72910275-72910294 | MS.gene48751:CDS | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | + | chr4.4:72910276-72910295 | MS.gene48751:CDS | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | + | chr4.4:72910304-72910323 | MS.gene48751:CDS | 20.0% |
| !!! | TTAATTTCATTAAGTTGTTC+TGG | + | chr4.4:72909519-72909538 | MS.gene48751:intron | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | + | chr4.4:72909812-72909831 | MS.gene48751:intron | 20.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | + | chr4.4:72908812-72908831 | MS.gene48751:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr4.4:72909450-72909469 | MS.gene48751:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | - | chr4.4:72909476-72909495 | None:intergenic | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr4.4:72909969-72909988 | None:intergenic | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | + | chr4.4:72909673-72909692 | MS.gene48751:intron | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | + | chr4.4:72909401-72909420 | MS.gene48751:CDS | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr4.4:72910675-72910694 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr4.4:72910501-72910520 | MS.gene48751:CDS | 25.0% |
| ! | TCTTACTTATTTGAACTACA+CGG | + | chr4.4:72909595-72909614 | MS.gene48751:intron | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr4.4:72910675-72910694 | MS.gene48751:intron | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | - | chr4.4:72910722-72910741 | None:intergenic | 25.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | chr4.4:72908763-72908782 | MS.gene48751:CDS | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | + | chr4.4:72910735-72910754 | MS.gene48751:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | + | chr4.4:72909924-72909943 | MS.gene48751:intron | 25.0% |
| !! | TTAACCATGTTGTTTGTTTA+GGG | + | chr4.4:72909620-72909639 | MS.gene48751:intron | 25.0% |
| !! | TTTAACCATGTTGTTTGTTT+AGG | + | chr4.4:72909619-72909638 | MS.gene48751:intron | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr4.4:72909363-72909382 | MS.gene48751:CDS | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | + | chr4.4:72909697-72909716 | MS.gene48751:intron | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | + | chr4.4:72910308-72910327 | MS.gene48751:CDS | 25.0% |
| AAAACACCTGGAAAACTATT+CGG | - | chr4.4:72910142-72910161 | None:intergenic | 30.0% | |
| AAATCCCTAAACAAACAACA+TGG | - | chr4.4:72909627-72909646 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr4.4:72908858-72908877 | MS.gene48751:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr4.4:72909458-72909477 | MS.gene48751:CDS | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | - | chr4.4:72910638-72910657 | None:intergenic | 30.0% | |
| AGAACGTCTTATGAAGTTAT+GGG | + | chr4.4:72909161-72909180 | MS.gene48751:CDS | 30.0% | |
| ATCATGATCTTCAAAACTTG+GGG | - | chr4.4:72910842-72910861 | None:intergenic | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | + | chr4.4:72908846-72908865 | MS.gene48751:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr4.4:72910680-72910699 | None:intergenic | 30.0% | |
| CTTACTTATTTGAACTACAC+GGG | + | chr4.4:72909596-72909615 | MS.gene48751:intron | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr4.4:72910678-72910697 | MS.gene48751:intron | 30.0% | |
| GAATAAATGCAAAGCAAGAA+GGG | - | chr4.4:72910639-72910658 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | + | chr4.4:72910190-72910209 | MS.gene48751:CDS | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | - | chr4.4:72910843-72910862 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr4.4:72909454-72909473 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr4.4:72908750-72908769 | MS.gene48751:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | + | chr4.4:72908883-72908902 | MS.gene48751:CDS | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | + | chr4.4:72909953-72909972 | MS.gene48751:intron | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr4.4:72908857-72908876 | MS.gene48751:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | chr4.4:72909022-72909041 | MS.gene48751:CDS | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | - | chr4.4:72909661-72909680 | None:intergenic | 30.0% | |
| TCCATGATTCTTTATTGCTA+GGG | - | chr4.4:72908686-72908705 | None:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | - | chr4.4:72910640-72910659 | None:intergenic | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | chr4.4:72909088-72909107 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | - | chr4.4:72908687-72908706 | None:intergenic | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | - | chr4.4:72909215-72909234 | None:intergenic | 30.0% | |
| ! | TATGATGATGCTGATAATGA+CGG | + | chr4.4:72910769-72910788 | MS.gene48751:intron | 30.0% |
| !! | ATCATGATCGATTTGATGAA+AGG | + | chr4.4:72910854-72910873 | MS.gene48751:intron | 30.0% |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | chr4.4:72909128-72909147 | MS.gene48751:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | + | chr4.4:72911022-72911041 | MS.gene48751:CDS | 30.0% |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | + | chr4.4:72909482-72909501 | MS.gene48751:intron | 30.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | - | chr4.4:72910083-72910102 | None:intergenic | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | + | chr4.4:72909250-72909269 | MS.gene48751:CDS | 35.0% | |
| ACATCAACTTCATCTGATAG+TGG | + | chr4.4:72908558-72908577 | MS.gene48751:CDS | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr4.4:72910515-72910534 | MS.gene48751:CDS | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | - | chr4.4:72909319-72909338 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | + | chr4.4:72910918-72910937 | MS.gene48751:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr4.4:72910516-72910535 | MS.gene48751:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | - | chr4.4:72908685-72908704 | None:intergenic | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr4.4:72909098-72909117 | MS.gene48751:CDS | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | - | chr4.4:72910844-72910863 | None:intergenic | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | + | chr4.4:72910641-72910660 | MS.gene48751:intron | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr4.4:72908947-72908966 | MS.gene48751:CDS | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | chr4.4:72908941-72908960 | MS.gene48751:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | + | chr4.4:72909247-72909266 | MS.gene48751:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | + | chr4.4:72909160-72909179 | MS.gene48751:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | - | chr4.4:72909318-72909337 | None:intergenic | 35.0% | |
| TAAAGAATCGAACAAGTGAG+TGG | - | chr4.4:72910486-72910505 | None:intergenic | 35.0% | |
| TAAGACCTATAGTCAATCCT+AGG | - | chr4.4:72909580-72909599 | None:intergenic | 35.0% | |
| TCCAAAACATCAACATTCGA+AGG | - | chr4.4:72910796-72910815 | None:intergenic | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr4.4:72908946-72908965 | MS.gene48751:CDS | 35.0% | |
| TTCACAAACTCAATAACCTG+TGG | - | chr4.4:72908924-72908943 | None:intergenic | 35.0% | |
| TTGAAGATCTTGGAGTTCTT+AGG | + | chr4.4:72910961-72910980 | MS.gene48751:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | + | chr4.4:72908980-72908999 | MS.gene48751:CDS | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | + | chr4.4:72910145-72910164 | MS.gene48751:CDS | 35.0% |
| ! | ATGATGATGCTGATAATGAC+GGG | + | chr4.4:72910770-72910789 | MS.gene48751:intron | 35.0% |
| ! | ATTTAGTTTACGCATTGCTG+AGG | + | chr4.4:72909783-72909802 | MS.gene48751:intron | 35.0% |
| ! | CATTCTTTGAAGACAATACC+TGG | + | chr4.4:72911000-72911019 | MS.gene48751:CDS | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | - | chr4.4:72909059-72909078 | None:intergenic | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | + | chr4.4:72910146-72910165 | MS.gene48751:CDS | 35.0% |
| ! | TCAATTCCGAATAGTTTTCC+AGG | + | chr4.4:72910133-72910152 | MS.gene48751:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr4.4:72910445-72910464 | MS.gene48751:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | - | chr4.4:72911021-72911040 | None:intergenic | 35.0% |
| !!! | CATCGAAAGAGTGTTTTGTT+TGG | + | chr4.4:72909986-72910005 | MS.gene48751:CDS | 35.0% |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | + | chr4.4:72909371-72909390 | MS.gene48751:CDS | 35.0% |
| !!! | TCGACATGTTTTGAAGATCT+TGG | + | chr4.4:72910951-72910970 | MS.gene48751:CDS | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | + | chr4.4:72910158-72910177 | MS.gene48751:CDS | 35.0% |
| AACTGCCTAGGATTGACTAT+AGG | + | chr4.4:72909572-72909591 | MS.gene48751:intron | 40.0% | |
| AAGATCTTGGAGTTCTTAGG+TGG | + | chr4.4:72910964-72910983 | MS.gene48751:CDS | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | + | chr4.4:72910093-72910112 | MS.gene48751:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+AGG | + | chr4.4:72910917-72910936 | MS.gene48751:intron | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | + | chr4.4:72908682-72908701 | MS.gene48751:CDS | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | + | chr4.4:72910362-72910381 | MS.gene48751:CDS | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | - | chr4.4:72910360-72910379 | None:intergenic | 40.0% | |
| GTCAGCATGAATCATTGCTA+GGG | - | chr4.4:72908646-72908665 | None:intergenic | 40.0% | |
| GTCTTATGAAGTTATGGGTC+CGG | + | chr4.4:72909166-72909185 | MS.gene48751:CDS | 40.0% | |
| TCACACAAGACAAAATGCCT+AGG | - | chr4.4:72909717-72909736 | None:intergenic | 40.0% | |
| TCAGCATGAATCATTGCTAG+GGG | - | chr4.4:72908645-72908664 | None:intergenic | 40.0% | |
| TCTTATGAAGTTATGGGTCC+GGG | + | chr4.4:72909167-72909186 | MS.gene48751:CDS | 40.0% | |
| TGGTCTGTATAAATCGTCTG+TGG | - | chr4.4:72910094-72910113 | None:intergenic | 40.0% | |
| TGTCAGCATGAATCATTGCT+AGG | - | chr4.4:72908647-72908666 | None:intergenic | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | + | chr4.4:72910919-72910938 | MS.gene48751:intron | 40.0% | |
| ! | AGGGGTGTACTTGTTTACAA+CGG | - | chr4.4:72910620-72910639 | None:intergenic | 40.0% |
| ! | ATTTTCTCGCTTCTGCCATT+TGG | + | chr4.4:72909643-72909662 | MS.gene48751:intron | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | + | chr4.4:72909560-72909579 | MS.gene48751:intron | 40.0% |
| ! | GCACAGAGAATCTTCCTTTT+CGG | + | chr4.4:72909198-72909217 | MS.gene48751:CDS | 40.0% |
| ! | GCCTTCGAATGTTGATGTTT+TGG | + | chr4.4:72910792-72910811 | MS.gene48751:intron | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | + | chr4.4:72910397-72910416 | MS.gene48751:CDS | 40.0% |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr4.4:72910543-72910562 | MS.gene48751:CDS | 40.0% |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr4.4:72910375-72910394 | MS.gene48751:CDS | 40.0% |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | + | chr4.4:72910029-72910048 | MS.gene48751:CDS | 40.0% |
| AACACAATAACGCACTAGCC+TGG | - | chr4.4:72910114-72910133 | None:intergenic | 45.0% | |
| AATCGAACAAGTGAGTGGTC+TGG | - | chr4.4:72910481-72910500 | None:intergenic | 45.0% | |
| ATGAGGAGGACGCAACAAAA+GGG | + | chr4.4:72910692-72910711 | MS.gene48751:intron | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | - | chr4.4:72910154-72910173 | None:intergenic | 45.0% | |
| CTAAGGTAACACGAATGCTC+TGG | - | chr4.4:72909071-72909090 | None:intergenic | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr4.4:72908951-72908970 | MS.gene48751:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr4.4:72910534-72910553 | MS.gene48751:CDS | 45.0% | |
| TATGAGGAGGACGCAACAAA+AGG | + | chr4.4:72910691-72910710 | MS.gene48751:intron | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr4.4:72908960-72908979 | None:intergenic | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | + | chr4.4:72909254-72909273 | MS.gene48751:CDS | 45.0% |
| ! | TCTGTTGTTGGCCTGTTGTT+AGG | - | chr4.4:72908897-72908916 | None:intergenic | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr4.4:72908963-72908982 | MS.gene48751:CDS | 45.0% |
| !! | GTATGCATTGGTCTTCAGCT+TGG | + | chr4.4:72910374-72910393 | MS.gene48751:CDS | 45.0% |
| !! | TCACTGATTCATGCTGAGAG+TGG | + | chr4.4:72908603-72908622 | MS.gene48751:CDS | 45.0% |
| ATCCCAACAGTCAGCTGATG+CGG | + | chr4.4:72910593-72910612 | MS.gene48751:CDS | 50.0% | |
| GAAGGCCTACCTCAGACTTT+AGG | + | chr4.4:72910326-72910345 | MS.gene48751:CDS | 50.0% | |
| GACAAGCCACCTAAAGTCTG+AGG | - | chr4.4:72910338-72910357 | None:intergenic | 50.0% | |
| ! | ACCTGTGGACTGTCTGTTGT+TGG | - | chr4.4:72908909-72908928 | None:intergenic | 50.0% |
| ! | AGCCACCTAAAGTCTGAGGT+AGG | - | chr4.4:72910334-72910353 | None:intergenic | 50.0% |
| !! | TGGGCTTTGTTCATGGCACA+TGG | + | chr4.4:72910165-72910184 | MS.gene48751:CDS | 50.0% |
| GAAGTTATGGGTCCGGGAGT+TGG | + | chr4.4:72909173-72909192 | MS.gene48751:CDS | 55.0% | |
| GACCGCATCAGCTGACTGTT+GGG | - | chr4.4:72910598-72910617 | None:intergenic | 55.0% | |
| GCCAACAACAGACAGTCCAC+AGG | + | chr4.4:72908905-72908924 | MS.gene48751:CDS | 55.0% | |
| GGCCTACCTCAGACTTTAGG+TGG | + | chr4.4:72910329-72910348 | MS.gene48751:CDS | 55.0% | |
| TTCTCTGTGCCTCCAACTCC+CGG | - | chr4.4:72909188-72909207 | None:intergenic | 55.0% | |
| GGACCGCATCAGCTGACTGT+TGG | - | chr4.4:72910599-72910618 | None:intergenic | 60.0% | |
| GTTATGGGTCCGGGAGTTGG+AGG | + | chr4.4:72909176-72909195 | MS.gene48751:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 72908549 | 72911049 | 72908549 | ID=MS.gene48751 |
| chr4.4 | mRNA | 72908549 | 72911049 | 72908549 | ID=MS.gene48751.t1;Parent=MS.gene48751 |
| chr4.4 | exon | 72908549 | 72909479 | 72908549 | ID=MS.gene48751.t1.exon1;Parent=MS.gene48751.t1 |
| chr4.4 | CDS | 72908549 | 72909479 | 72908549 | ID=cds.MS.gene48751.t1;Parent=MS.gene48751.t1 |
| chr4.4 | exon | 72909963 | 72910621 | 72909963 | ID=MS.gene48751.t1.exon2;Parent=MS.gene48751.t1 |
| chr4.4 | CDS | 72909963 | 72910621 | 72909963 | ID=cds.MS.gene48751.t1;Parent=MS.gene48751.t1 |
| chr4.4 | exon | 72910939 | 72911049 | 72910939 | ID=MS.gene48751.t1.exon3;Parent=MS.gene48751.t1 |
| chr4.4 | CDS | 72910939 | 72911049 | 72910939 | ID=cds.MS.gene48751.t1;Parent=MS.gene48751.t1 |
| Gene Sequence |
| Protein sequence |
