Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48780.t1 | XP_024632961.1 | 84.5 | 536 | 59 | 2 | 1 | 512 | 1 | 536 | 7.20E-264 | 919.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48780.t1 | Q9SZL8 | 28.3 | 470 | 314 | 6 | 32 | 499 | 70 | 518 | 1.5e-55 | 218.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48780.t1 | D3YBB9 | 78.5 | 512 | 110 | 0 | 1 | 512 | 49 | 560 | 3.6e-241 | 843.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene48780.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48780.t1 | MTR_0558s0020 | 87.162 | 296 | 37 | 1 | 1 | 295 | 1 | 296 | 0.0 | 542 |
| MS.gene48780.t1 | MTR_1g083640 | 82.746 | 284 | 33 | 1 | 1 | 268 | 1 | 284 | 1.40e-173 | 491 |
| MS.gene48780.t1 | MTR_8g446020 | 73.898 | 295 | 38 | 1 | 1 | 295 | 1 | 256 | 7.14e-155 | 442 |
| MS.gene48780.t1 | MTR_2g014100 | 82.041 | 245 | 35 | 1 | 1 | 236 | 1 | 245 | 3.32e-144 | 415 |
| MS.gene48780.t1 | MTR_6g090505 | 82.700 | 237 | 41 | 0 | 65 | 301 | 1 | 237 | 1.17e-142 | 415 |
| MS.gene48780.t1 | MTR_6g090505 | 66.667 | 102 | 7 | 2 | 396 | 495 | 230 | 306 | 3.98e-33 | 130 |
| MS.gene48780.t1 | MTR_0337s0040 | 72.308 | 260 | 32 | 2 | 1 | 259 | 1 | 221 | 1.41e-126 | 369 |
| MS.gene48780.t1 | MTR_3g008240 | 84.729 | 203 | 30 | 1 | 1 | 202 | 1 | 203 | 3.74e-122 | 357 |
| MS.gene48780.t1 | MTR_4g040430 | 82.673 | 202 | 31 | 1 | 1 | 202 | 1 | 198 | 1.22e-117 | 345 |
| MS.gene48780.t1 | MTR_5g071590 | 73.333 | 180 | 35 | 2 | 1 | 167 | 1 | 180 | 3.30e-90 | 275 |
| MS.gene48780.t1 | MTR_1g055240 | 87.324 | 142 | 18 | 0 | 91 | 232 | 3 | 144 | 1.22e-87 | 266 |
| MS.gene48780.t1 | MTR_0019s0290 | 81.579 | 152 | 28 | 0 | 82 | 233 | 9 | 160 | 6.20e-87 | 265 |
| MS.gene48780.t1 | MTR_1281s0010 | 79.817 | 109 | 22 | 0 | 19 | 127 | 1 | 109 | 1.38e-56 | 184 |
| MS.gene48780.t1 | MTR_6g051425 | 32.188 | 320 | 182 | 7 | 40 | 341 | 22 | 324 | 6.56e-40 | 148 |
| MS.gene48780.t1 | MTR_0337s0060 | 89.394 | 66 | 7 | 0 | 447 | 512 | 21 | 86 | 4.64e-33 | 126 |
| MS.gene48780.t1 | MTR_4g008820 | 85.000 | 80 | 11 | 1 | 1 | 79 | 125 | 204 | 4.66e-33 | 134 |
| MS.gene48780.t1 | MTR_8g046060 | 78.409 | 88 | 10 | 2 | 1 | 79 | 91 | 178 | 1.84e-32 | 124 |
| MS.gene48780.t1 | MTR_1g070355 | 26.543 | 324 | 217 | 6 | 41 | 362 | 80 | 384 | 3.74e-19 | 91.3 |
| MS.gene48780.t1 | MTR_4g035820 | 23.103 | 290 | 190 | 7 | 17 | 299 | 61 | 324 | 1.69e-14 | 76.6 |
| MS.gene48780.t1 | MTR_0402s0040 | 24.865 | 185 | 120 | 4 | 49 | 233 | 40 | 205 | 5.10e-14 | 74.7 |
| MS.gene48780.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.35e-13 | 66.6 |
| MS.gene48780.t1 | MTR_1g013060 | 30.415 | 217 | 130 | 8 | 40 | 253 | 29 | 227 | 5.81e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48780.t1 | AT4G38180 | 28.298 | 470 | 314 | 6 | 32 | 499 | 70 | 518 | 1.89e-60 | 213 |
| MS.gene48780.t1 | AT3G06250 | 26.069 | 491 | 286 | 11 | 34 | 521 | 189 | 605 | 2.23e-41 | 159 |
| MS.gene48780.t1 | AT3G06250 | 26.069 | 491 | 286 | 11 | 34 | 521 | 189 | 605 | 2.23e-41 | 159 |
| MS.gene48780.t1 | AT3G06250 | 26.069 | 491 | 286 | 11 | 34 | 521 | 189 | 605 | 2.23e-41 | 159 |
| MS.gene48780.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 9.95e-41 | 156 |
| MS.gene48780.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 1.81e-40 | 156 |
| MS.gene48780.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 1.81e-40 | 156 |
| MS.gene48780.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 1.81e-40 | 156 |
| MS.gene48780.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 1.81e-40 | 156 |
| MS.gene48780.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 1.81e-40 | 156 |
| MS.gene48780.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 2.68e-40 | 155 |
| MS.gene48780.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 2.92e-40 | 155 |
| MS.gene48780.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 2.92e-40 | 155 |
| MS.gene48780.t1 | AT1G10240 | 26.013 | 469 | 300 | 12 | 49 | 497 | 62 | 503 | 4.34e-39 | 151 |
| MS.gene48780.t1 | AT1G10240 | 26.013 | 469 | 300 | 12 | 49 | 497 | 62 | 503 | 4.34e-39 | 151 |
| MS.gene48780.t1 | AT4G38170 | 28.623 | 276 | 186 | 4 | 235 | 507 | 24 | 291 | 1.12e-37 | 146 |
| MS.gene48780.t1 | AT5G28530 | 26.757 | 441 | 279 | 13 | 40 | 462 | 60 | 474 | 2.04e-37 | 147 |
| MS.gene48780.t1 | AT5G28530 | 26.757 | 441 | 279 | 13 | 40 | 462 | 60 | 474 | 2.04e-37 | 147 |
| MS.gene48780.t1 | AT5G28530 | 26.757 | 441 | 279 | 13 | 40 | 462 | 60 | 474 | 2.36e-37 | 146 |
| MS.gene48780.t1 | AT2G27110 | 25.150 | 501 | 310 | 12 | 4 | 499 | 23 | 463 | 3.12e-37 | 147 |
| MS.gene48780.t1 | AT2G27110 | 25.150 | 501 | 310 | 12 | 4 | 499 | 23 | 463 | 3.12e-37 | 147 |
| MS.gene48780.t1 | AT2G27110 | 29.310 | 290 | 195 | 4 | 213 | 499 | 36 | 318 | 1.17e-36 | 144 |
| MS.gene48780.t1 | AT5G18960 | 25.050 | 503 | 299 | 13 | 24 | 521 | 200 | 629 | 1.89e-36 | 144 |
| MS.gene48780.t1 | AT5G18960 | 25.050 | 503 | 299 | 13 | 24 | 521 | 200 | 629 | 1.89e-36 | 144 |
| MS.gene48780.t1 | AT3G22170 | 22.338 | 479 | 331 | 9 | 34 | 507 | 69 | 511 | 1.35e-33 | 136 |
| MS.gene48780.t1 | AT3G22170 | 22.338 | 479 | 331 | 9 | 34 | 507 | 69 | 511 | 1.35e-33 | 136 |
| MS.gene48780.t1 | AT1G80010 | 25.205 | 488 | 314 | 16 | 41 | 511 | 101 | 554 | 2.71e-33 | 135 |
| MS.gene48780.t1 | AT2G32250 | 24.254 | 503 | 301 | 13 | 1 | 496 | 8 | 437 | 2.48e-31 | 129 |
| MS.gene48780.t1 | AT2G32250 | 24.254 | 503 | 301 | 13 | 1 | 496 | 8 | 437 | 3.23e-31 | 129 |
| MS.gene48780.t1 | AT2G32250 | 24.254 | 503 | 301 | 13 | 1 | 496 | 8 | 437 | 3.23e-31 | 129 |
| MS.gene48780.t1 | AT2G32250 | 24.254 | 503 | 301 | 13 | 1 | 496 | 8 | 437 | 3.27e-31 | 129 |
| MS.gene48780.t1 | AT2G32250 | 24.254 | 503 | 301 | 13 | 1 | 496 | 8 | 437 | 3.27e-31 | 129 |
| MS.gene48780.t1 | AT2G32250 | 24.254 | 503 | 301 | 13 | 1 | 496 | 8 | 437 | 3.27e-31 | 129 |
| MS.gene48780.t1 | AT2G32250 | 24.670 | 454 | 266 | 11 | 50 | 496 | 12 | 396 | 7.76e-31 | 127 |
| MS.gene48780.t1 | AT2G32250 | 24.670 | 454 | 266 | 11 | 50 | 496 | 12 | 396 | 8.09e-31 | 127 |
| MS.gene48780.t1 | AT1G52520 | 23.849 | 478 | 321 | 13 | 41 | 512 | 91 | 531 | 2.14e-29 | 123 |
| MS.gene48780.t1 | AT4G19990 | 24.342 | 456 | 276 | 12 | 41 | 483 | 27 | 426 | 1.05e-27 | 118 |
| MS.gene48780.t1 | AT4G19990 | 24.342 | 456 | 276 | 12 | 41 | 483 | 27 | 426 | 1.31e-27 | 117 |
| MS.gene48780.t1 | AT4G19990 | 24.342 | 456 | 276 | 12 | 41 | 483 | 27 | 426 | 1.31e-27 | 117 |
| MS.gene48780.t1 | AT4G19990 | 24.342 | 456 | 276 | 12 | 41 | 483 | 41 | 440 | 1.38e-27 | 117 |
| MS.gene48780.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 219 | 483 | 106 | 369 | 1.74e-27 | 117 |
| MS.gene48780.t1 | AT4G19990 | 24.342 | 456 | 276 | 12 | 41 | 483 | 27 | 426 | 2.02e-27 | 117 |
| MS.gene48780.t1 | AT4G19990 | 24.342 | 456 | 276 | 12 | 41 | 483 | 27 | 426 | 2.02e-27 | 117 |
| MS.gene48780.t1 | AT5G28530 | 23.434 | 431 | 243 | 16 | 40 | 462 | 60 | 411 | 6.81e-18 | 87.4 |
| MS.gene48780.t1 | AT5G28530 | 23.434 | 431 | 243 | 16 | 40 | 462 | 60 | 411 | 7.90e-18 | 87.4 |
Find 73 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 4.4:-73306990 | MS.gene48780:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 4.4:-73307538 | MS.gene48780:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 4.4:-73308059 | MS.gene48780:CDS |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 4.4:-73307505 | MS.gene48780:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 4.4:+73307411 | None:intergenic |
| GAGGGATAATACTGCTGATT+TGG | 0.314487 | 4.4:-73306957 | MS.gene48780:CDS |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 4.4:-73307216 | MS.gene48780:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 4.4:+73307393 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 4.4:+73308009 | None:intergenic |
| TACTGCTGATTTGGACTTCA+AGG | 0.365842 | 4.4:-73306948 | MS.gene48780:CDS |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 4.4:-73307116 | MS.gene48780:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 4.4:-73308002 | MS.gene48780:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 4.4:-73308010 | MS.gene48780:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 4.4:-73307117 | MS.gene48780:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 4.4:+73308539 | None:intergenic |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 4.4:+73308778 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 4.4:-73308768 | MS.gene48780:CDS |
| GGACCGCATAAGCTGACTAT+TGG | 0.410008 | 4.4:+73306895 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 4.4:-73308697 | MS.gene48780:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 4.4:-73308362 | MS.gene48780:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 4.4:-73308480 | MS.gene48780:CDS |
| GACCGCATAAGCTGACTATT+GGG | 0.435741 | 4.4:+73306896 | None:intergenic |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 4.4:-73308448 | MS.gene48780:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 4.4:+73307400 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 4.4:-73308497 | MS.gene48780:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 4.4:-73308332 | MS.gene48780:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 4.4:-73308843 | MS.gene48780:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 4.4:-73307326 | MS.gene48780:CDS |
| CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 4.4:+73308392 | None:intergenic |
| GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 4.4:-73307162 | MS.gene48780:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 4.4:-73308648 | MS.gene48780:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 4.4:+73308503 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 4.4:-73308710 | MS.gene48780:CDS |
| TCTAATGACGACTCGTCAAA+AGG | 0.488508 | 4.4:-73308219 | MS.gene48780:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 4.4:-73308654 | MS.gene48780:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 4.4:+73307525 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 4.4:-73307215 | MS.gene48780:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 4.4:-73308206 | MS.gene48780:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 4.4:-73306976 | MS.gene48780:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 4.4:+73308114 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 4.4:-73307129 | MS.gene48780:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 4.4:+73308248 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 4.4:-73307111 | MS.gene48780:CDS |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 4.4:+73307008 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 4.4:-73308444 | MS.gene48780:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 4.4:-73308603 | MS.gene48780:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 4.4:+73307013 | None:intergenic |
| TGTTATGCTTGTAACAAAGA+AGG | 0.541604 | 4.4:-73308614 | MS.gene48780:CDS |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 4.4:-73308778 | MS.gene48780:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 4.4:-73308602 | MS.gene48780:CDS |
| GAGAACATCTTATGAAGTGA+TGG | 0.551307 | 4.4:-73308300 | MS.gene48780:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 4.4:+73308404 | None:intergenic |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 4.4:+73307380 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 4.4:-73308152 | MS.gene48780:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 4.4:-73308819 | MS.gene48780:CDS |
| GGGTGAAGGTGTTGGAGGCA+CGG | 0.565649 | 4.4:-73308279 | MS.gene48780:CDS |
| CAGCTGGTTTGAAAACGACT+CGG | 0.576497 | 4.4:-73307078 | MS.gene48780:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 4.4:-73307394 | MS.gene48780:CDS |
| GAAGTGATGGGTGAAGGTGT+TGG | 0.603704 | 4.4:-73308287 | MS.gene48780:CDS |
| GACGACTCGTCAAAAGGAGA+TGG | 0.604288 | 4.4:-73308213 | MS.gene48780:CDS |
| GACTCGTCAAAAGGAGATGG+TGG | 0.611157 | 4.4:-73308210 | MS.gene48780:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 4.4:-73308854 | MS.gene48780:CDS |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 4.4:+73307160 | None:intergenic |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 4.4:+73308554 | None:intergenic |
| GTGATGGGTGAAGGTGTTGG+AGG | 0.621481 | 4.4:-73308284 | MS.gene48780:CDS |
| ATCCCAATAGTCAGCTTATG+CGG | 0.628481 | 4.4:-73306898 | MS.gene48780:intron |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 4.4:-73307325 | MS.gene48780:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.643044 | 4.4:-73308299 | MS.gene48780:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 4.4:-73306975 | MS.gene48780:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 4.4:-73308445 | MS.gene48780:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 4.4:+73306425 | None:intergenic |
| TCTTATGAAGTGATGGGTGA+AGG | 0.656961 | 4.4:-73308293 | MS.gene48780:CDS |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 4.4:-73307398 | MS.gene48780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr4.4:73306638-73306657 | MS.gene48780:intron | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr4.4:73306844-73306863 | MS.gene48780:intron | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr4.4:73306582-73306601 | MS.gene48780:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+TGG | - | chr4.4:73307465-73307484 | MS.gene48780:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr4.4:73308105-73308124 | MS.gene48780:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr4.4:73307437-73307456 | MS.gene48780:CDS | 20.0% |
| !!! | TTTTGATGAGTTAACTAATT+TGG | - | chr4.4:73308035-73308054 | MS.gene48780:CDS | 20.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr4.4:73307943-73307962 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr4.4:73306644-73306663 | MS.gene48780:intron | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr4.4:73307282-73307301 | MS.gene48780:CDS | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr4.4:73306847-73306866 | MS.gene48780:intron | 25.0% |
| ! | CAAAATAGTATTTGAAGGAA+AGG | + | chr4.4:73308476-73308495 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr4.4:73308302-73308321 | MS.gene48780:CDS | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr4.4:73306473-73306492 | MS.gene48780:intron | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr4.4:73307355-73307374 | MS.gene48780:CDS | 25.0% |
| ! | TGAATAAATGAAAAGGAAGA+TGG | + | chr4.4:73308441-73308460 | None:intergenic | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr4.4:73306848-73306867 | MS.gene48780:intron | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr4.4:73307457-73307476 | MS.gene48780:CDS | 25.0% |
| !! | CAAAGTTTTTACAATTGAGA+AGG | - | chr4.4:73308536-73308555 | MS.gene48780:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr4.4:73307725-73307744 | MS.gene48780:intron | 25.0% |
| !! | TTCCTTCAAATACTATTTTG+AGG | - | chr4.4:73308476-73308495 | MS.gene48780:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr4.4:73307195-73307214 | MS.gene48780:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr4.4:73307196-73307215 | MS.gene48780:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr4.4:73308577-73308596 | MS.gene48780:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr4.4:73306634-73306653 | None:intergenic | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr4.4:73306960-73306979 | MS.gene48780:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr4.4:73308109-73308128 | MS.gene48780:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr4.4:73308578-73308597 | MS.gene48780:CDS | 25.0% |
| AAAAACACATGATCTTTCCA+TGG | + | chr4.4:73307528-73307547 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr4.4:73306690-73306709 | MS.gene48780:intron | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr4.4:73307290-73307309 | MS.gene48780:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr4.4:73308076-73308095 | MS.gene48780:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | chr4.4:73306993-73307012 | MS.gene48780:CDS | 30.0% | |
| AGTACACAATACTAACCTAA+TGG | + | chr4.4:73307308-73307327 | None:intergenic | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr4.4:73308077-73308096 | MS.gene48780:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr4.4:73307770-73307789 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | + | chr4.4:73308649-73308668 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr4.4:73307233-73307252 | MS.gene48780:CDS | 30.0% | |
| CACAAATTCTAAGTCAAGAT+AGG | + | chr4.4:73307495-73307514 | None:intergenic | 30.0% | |
| CCATGATTCTTTATCACTAA+AGG | + | chr4.4:73306517-73306536 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr4.4:73306514-73306533 | MS.gene48780:intron | 30.0% | |
| CTCCTCAAAATAGTATTTGA+AGG | + | chr4.4:73308481-73308500 | None:intergenic | 30.0% | |
| CTGACTGTGAATAAATGAAA+AGG | + | chr4.4:73308448-73308467 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | - | chr4.4:73307394-73307413 | MS.gene48780:CDS | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr4.4:73307991-73308010 | MS.gene48780:intron | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr4.4:73308650-73308669 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr4.4:73307286-73307305 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr4.4:73306779-73306798 | MS.gene48780:intron | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr4.4:73306524-73306543 | MS.gene48780:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr4.4:73308287-73308306 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr4.4:73306689-73306708 | MS.gene48780:intron | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr4.4:73307161-73307180 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr4.4:73308421-73308440 | None:intergenic | 30.0% | |
| TGTTATGCTTGTAACAAAGA+AGG | - | chr4.4:73306678-73306697 | MS.gene48780:intron | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr4.4:73307047-73307066 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr4.4:73307684-73307703 | MS.gene48780:intron | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr4.4:73306891-73306910 | None:intergenic | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr4.4:73306812-73306831 | MS.gene48780:intron | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr4.4:73307037-73307056 | MS.gene48780:CDS | 30.0% |
| ! | GGTTTCAAATGTTGATGTTT+TGG | - | chr4.4:73308599-73308618 | MS.gene48780:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr4.4:73307884-73307903 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr4.4:73307934-73307953 | MS.gene48780:intron | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr4.4:73308661-73308680 | MS.gene48780:CDS | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr4.4:73307369-73307388 | MS.gene48780:CDS | 30.0% |
| !! | CTTCAAATACTATTTTGAGG+AGG | - | chr4.4:73308479-73308498 | MS.gene48780:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr4.4:73308662-73308681 | MS.gene48780:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr4.4:73308758-73308777 | MS.gene48780:CDS | 30.0% |
| !!! | CACAATATGTTTTAAAGCGA+TGG | - | chr4.4:73308829-73308848 | MS.gene48780:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr4.4:73307946-73307965 | MS.gene48780:intron | 30.0% |
| !!! | TTCAAGATTTTGGAGTTCTT+AGG | - | chr4.4:73308768-73308787 | MS.gene48780:CDS | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr4.4:73308316-73308335 | MS.gene48780:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr4.4:73306595-73306614 | MS.gene48780:intron | 35.0% | |
| ATATCAACTTCATCTGAGAG+TGG | - | chr4.4:73306438-73306457 | MS.gene48780:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr4.4:73308317-73308336 | MS.gene48780:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr4.4:73306930-73306949 | MS.gene48780:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | + | chr4.4:73308651-73308670 | None:intergenic | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr4.4:73306778-73306797 | MS.gene48780:intron | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | - | chr4.4:73308163-73308182 | MS.gene48780:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr4.4:73306773-73306792 | MS.gene48780:intron | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr4.4:73306992-73307011 | MS.gene48780:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr4.4:73306715-73306734 | MS.gene48780:intron | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr4.4:73306756-73306775 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr4.4:73307787-73307806 | MS.gene48780:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr4.4:73308246-73308265 | MS.gene48780:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr4.4:73307959-73307978 | MS.gene48780:intron | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr4.4:73308176-73308195 | MS.gene48780:CDS | 35.0% |
| !!! | AAGATTTTGGAGTTCTTAGG+TGG | - | chr4.4:73308771-73308790 | MS.gene48780:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr4.4:73307830-73307849 | MS.gene48780:intron | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr4.4:73308282-73308301 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr4.4:73307624-73307643 | None:intergenic | 40.0% | |
| ATCCCAATAGTCAGCTTATG+CGG | - | chr4.4:73308394-73308413 | MS.gene48780:CDS | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr4.4:73306449-73306468 | MS.gene48780:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr4.4:73308725-73308744 | MS.gene48780:CDS | 40.0% | |
| CATGTCGACATAAAAAACCC+CGG | + | chr4.4:73308746-73308765 | None:intergenic | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr4.4:73308724-73308743 | MS.gene48780:CDS | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr4.4:73307754-73307773 | MS.gene48780:intron | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr4.4:73307894-73307913 | MS.gene48780:intron | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr4.4:73307620-73307639 | MS.gene48780:intron | 40.0% | |
| TCTAATGACGACTCGTCAAA+AGG | - | chr4.4:73307073-73307092 | MS.gene48780:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr4.4:73307895-73307914 | None:intergenic | 40.0% | |
| TTGAGGAGGACACAACAAAA+GGG | - | chr4.4:73308493-73308512 | MS.gene48780:CDS | 40.0% | |
| TTTGAGGAGGACACAACAAA+AGG | - | chr4.4:73308492-73308511 | MS.gene48780:CDS | 40.0% | |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | + | chr4.4:73308135-73308154 | None:intergenic | 40.0% |
| ! | GAGGGATAATACTGCTGATT+TGG | - | chr4.4:73308335-73308354 | MS.gene48780:CDS | 40.0% |
| ! | TGGTTTAGAATTGAAGGCTC+TGG | - | chr4.4:73307375-73307394 | MS.gene48780:CDS | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr4.4:73308175-73308194 | MS.gene48780:CDS | 40.0% |
| !! | GTTTTGGATGCAGAACTTGA+AGG | - | chr4.4:73308615-73308634 | MS.gene48780:CDS | 40.0% |
| !! | TACTGCTGATTTGGACTTCA+AGG | - | chr4.4:73308344-73308363 | MS.gene48780:CDS | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr4.4:73306729-73306748 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTGA+AGG | - | chr4.4:73306999-73307018 | MS.gene48780:CDS | 40.0% |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr4.4:73307203-73307222 | MS.gene48780:CDS | 40.0% |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr4.4:73307140-73307159 | MS.gene48780:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr4.4:73306741-73306760 | None:intergenic | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | - | chr4.4:73307508-73307527 | MS.gene48780:CDS | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr4.4:73306783-73306802 | MS.gene48780:intron | 45.0% | |
| GACCGCATAAGCTGACTATT+GGG | + | chr4.4:73308399-73308418 | None:intergenic | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr4.4:73308644-73308663 | None:intergenic | 45.0% | |
| GGCCTACTTCAGACTTTAAG+TGG | - | chr4.4:73308130-73308149 | MS.gene48780:CDS | 45.0% | |
| GGGTTGTCACAATCGACATT+AGG | - | chr4.4:73308682-73308701 | MS.gene48780:CDS | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr4.4:73308726-73308745 | MS.gene48780:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr4.4:73307181-73307200 | None:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr4.4:73306792-73306811 | None:intergenic | 45.0% | |
| TTGAAGGAAACCTTTCCCCA+AGG | - | chr4.4:73308631-73308650 | MS.gene48780:CDS | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr4.4:73308198-73308217 | MS.gene48780:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr4.4:73308181-73308200 | MS.gene48780:CDS | 45.0% |
| !! | CAGCTGGTTTGAAAACGACT+CGG | - | chr4.4:73308214-73308233 | MS.gene48780:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr4.4:73306795-73306814 | MS.gene48780:intron | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr4.4:73307902-73307921 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | chr4.4:73307898-73307917 | MS.gene48780:intron | 50.0% | |
| CTCAAGTAGCGCAAATGCTC+TGG | + | chr4.4:73306903-73306922 | None:intergenic | 50.0% | |
| GACGACTCGTCAAAAGGAGA+TGG | - | chr4.4:73307079-73307098 | MS.gene48780:CDS | 50.0% | |
| GACTCGTCAAAAGGAGATGG+TGG | - | chr4.4:73307082-73307101 | MS.gene48780:CDS | 50.0% | |
| GGACCGCATAAGCTGACTAT+TGG | + | chr4.4:73308400-73308419 | None:intergenic | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr4.4:73307967-73307986 | MS.gene48780:intron | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr4.4:73307966-73307985 | MS.gene48780:intron | 50.0% | |
| !! | GAAGTGATGGGTGAAGGTGT+TGG | - | chr4.4:73307005-73307024 | MS.gene48780:CDS | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr4.4:73307915-73307934 | None:intergenic | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr4.4:73307086-73307105 | MS.gene48780:CDS | 55.0% |
| !! | GTGATGGGTGAAGGTGTTGG+AGG | - | chr4.4:73307008-73307027 | MS.gene48780:CDS | 55.0% |
| !! | GGGTGAAGGTGTTGGAGGCA+CGG | - | chr4.4:73307013-73307032 | MS.gene48780:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 73306429 | 73308885 | 73306429 | ID=MS.gene48780 |
| chr4.4 | mRNA | 73306429 | 73308885 | 73306429 | ID=MS.gene48780.t1;Parent=MS.gene48780 |
| chr4.4 | exon | 73308003 | 73308885 | 73308003 | ID=MS.gene48780.t1.exon1;Parent=MS.gene48780.t1 |
| chr4.4 | CDS | 73308003 | 73308885 | 73308003 | ID=cds.MS.gene48780.t1;Parent=MS.gene48780.t1 |
| chr4.4 | exon | 73306899 | 73307550 | 73306899 | ID=MS.gene48780.t1.exon2;Parent=MS.gene48780.t1 |
| chr4.4 | CDS | 73306899 | 73307550 | 73306899 | ID=cds.MS.gene48780.t1;Parent=MS.gene48780.t1 |
| chr4.4 | exon | 73306429 | 73306468 | 73306429 | ID=MS.gene48780.t1.exon3;Parent=MS.gene48780.t1 |
| chr4.4 | CDS | 73306429 | 73306468 | 73306429 | ID=cds.MS.gene48780.t1;Parent=MS.gene48780.t1 |
| Gene Sequence |
| Protein sequence |
